Query 032559
Match_columns 138
No_of_seqs 21 out of 23
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 03:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02763 hydrolase, hydrolyzin 100.0 1.5E-75 3.3E-80 541.2 12.5 137 1-137 769-978 (978)
2 cd01901 Ntn_hydrolase The Ntn 43.0 82 0.0018 21.1 4.9 34 52-87 3-43 (164)
3 PTZ00414 10 kDa heat shock pro 39.2 9.7 0.00021 28.2 -0.1 21 20-42 71-91 (100)
4 COG0802 Predicted ATPase or ki 36.9 36 0.00077 26.8 2.7 32 31-62 6-37 (149)
5 PHA02969 hypothetical protein; 34.5 14 0.00029 28.5 0.1 13 27-39 86-98 (111)
6 PF03610 EIIA-man: PTS system 33.0 15 0.00033 25.6 0.1 43 35-77 42-84 (116)
7 PF14849 YidC_periplas: YidC p 31.3 1.3E+02 0.0029 23.2 5.1 50 37-89 72-123 (270)
8 PF12757 DUF3812: Protein of u 31.0 18 0.00039 27.0 0.2 33 34-66 36-70 (126)
9 PRK14533 groES co-chaperonin G 30.9 16 0.00035 26.3 -0.0 21 20-42 62-82 (91)
10 COG3324 Predicted enzyme relat 28.0 46 0.00099 25.4 2.0 60 58-118 55-127 (127)
11 COG2605 Predicted kinase relat 27.5 27 0.00059 31.2 0.8 15 86-100 282-296 (333)
12 cd01778 RASSF1_RA Ubiquitin-li 27.4 42 0.00092 25.0 1.7 22 69-90 11-32 (96)
13 PF03703 bPH_2: Bacterial PH d 27.1 22 0.00048 22.1 0.1 32 62-93 18-49 (80)
14 COG0718 Uncharacterized protei 26.8 60 0.0013 24.3 2.4 33 53-87 31-63 (105)
15 PRK13692 (3R)-hydroxyacyl-ACP 26.8 1.5E+02 0.0033 22.3 4.6 40 60-99 117-156 (159)
16 PF09394 Inhibitor_I42: Chagas 25.7 2E+02 0.0043 18.8 8.3 81 48-134 6-90 (92)
17 PF02367 UPF0079: Uncharacteri 25.5 62 0.0013 24.1 2.3 18 45-62 10-27 (123)
18 cd00320 cpn10 Chaperonin 10 Kd 23.3 26 0.00056 24.8 -0.1 21 20-42 66-86 (93)
19 TIGR00478 tly hemolysin TlyA f 23.1 18 0.00039 29.3 -1.1 12 89-100 81-92 (228)
20 PF10882 bPH_5: Bacterial PH d 22.6 1.2E+02 0.0026 20.3 3.1 54 62-115 9-68 (100)
21 PRK00364 groES co-chaperonin G 22.5 28 0.00061 24.8 -0.1 21 20-42 67-87 (95)
22 TIGR01451 B_ant_repeat conserv 22.1 52 0.0011 20.9 1.1 18 3-20 36-53 (53)
23 PF06658 DUF1168: Protein of u 21.5 35 0.00077 26.7 0.3 14 84-97 25-38 (142)
24 PF12503 CMV_1a_C: Cucumber mo 21.3 45 0.00096 24.8 0.8 15 2-21 33-47 (85)
25 PF13330 Mucin2_WxxW: Mucin-2 20.7 49 0.0011 22.8 0.9 14 123-136 73-86 (90)
26 PRK14629 hypothetical protein; 20.5 89 0.0019 23.0 2.2 33 51-86 27-60 (99)
No 1
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=100.00 E-value=1.5e-75 Score=541.21 Aligned_cols=137 Identities=72% Similarity=1.216 Sum_probs=135.0
Q ss_pred CccCCCCccceeeeeecCceeeeccceeecCCccchhhhhhhhhhhCCCcceEEEeeecccceEEEEEeeccCCCCceEE
Q 032559 1 MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGGGLILQRKLTIPKDNPKIFK 80 (138)
Q Consensus 1 M~H~PSg~qWl~sr~e~~GYEEysgtE~rsaGctEEY~Vi~R~l~~~~~ee~l~lEgDiGGGLvl~R~I~i~k~~pki~~ 80 (138)
|+|||||+||||||+|+|||||||||||||||||||||||+|+|+|+++||+|+|||||||||||+|+|+|||||||+|+
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (978)
T PLN02763 769 MIHKPSGYQWLHSRIEIGGYEEYSGTEYRSAGCTEEYKVVERDLEQAGGEESLGLEGDIGGGLVLAREISIPKDSPKVVK 848 (978)
T ss_pred EEecCCcchhhhhhcccCceeeccccccccCCCchhHHHHHHHHHHcCCceeEEeeecccCcEEEEEEeecccCCCceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeceeEEeeeccCCCCccee--------------------EEee------------------------------------
Q 032559 81 IDSKILARKVGAGSGGFSRK--------------------FSSV------------------------------------ 104 (138)
Q Consensus 81 I~SsI~ArsVGAgSGGfSrl--------------------ftai------------------------------------ 104 (138)
|||+|+|||||||||||||| ||||
T Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (978)
T PLN02763 849 ISSSIVARSVGAGSGGFSRLVCLRVHPTFKLLHPTESFVSFTAIDGSKHELWPEFGEQFYEGNDRPNGEWMLVDKETGLA 928 (978)
T ss_pred EeeeeEEeecccCCCCcceeEEEEeccceeecCccceeEEEEeccCcccccCCcccceeeecCCCCCceEEEEeccccee
Confidence 99999999999999999999 7777
Q ss_pred -----------------eCCeeeeeeccccccCCCCCCeeEeeeeeEEec
Q 032559 105 -----------------SSGTVNLELWSEERPVSKQSPLAVSHEYEVIKI 137 (138)
Q Consensus 105 -----------------g~g~vnleLWSeeRpVSk~tPL~IsH~Yev~~~ 137 (138)
|||+||||||||||||||||||+|||+||||++
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (978)
T PLN02763 929 VVNRFDVKEVEKCHVHWGPGTVNLELWSEERPVSKETPLSISHEYEVIDT 978 (978)
T ss_pred EEeecChhheEEEEEEecCCceeeeeecccCCcccCCCceEeeeeEEecC
Confidence 999999999999999999999999999999985
No 2
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=43.02 E-value=82 Score=21.06 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=25.0
Q ss_pred eEEEeeecccceEEEEEeec-------cCCCCceEEeeceeEE
Q 032559 52 SLMLEGDIGGGLILQRKLTI-------PKDNPKIFKIDSKILA 87 (138)
Q Consensus 52 ~l~lEgDiGGGLvl~R~I~i-------~k~~pki~~I~SsI~A 87 (138)
++.+.++ +|+||+++-.+ ..+..|+++|+..+..
T Consensus 3 ~i~i~~~--~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~ 43 (164)
T cd01901 3 SVAIKGK--GGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAW 43 (164)
T ss_pred EEEEEeC--CEEEEEEecccCccCeecCCCcceEEEecCCeEE
Confidence 4677777 99999998665 4456788888865544
No 3
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=39.17 E-value=9.7 Score=28.16 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.0
Q ss_pred eeeeccceeecCCccchhhhhhh
Q 032559 20 YEEYCGTEYRSAGCTEEYSVVER 42 (138)
Q Consensus 20 YEEysgtE~rsaGctEEY~Vi~R 42 (138)
|.+|+|+|..-.| |||-|++-
T Consensus 71 ~~~y~Gtevk~dg--~ey~i~~e 91 (100)
T PTZ00414 71 LPEFGGSSVKVEG--EEFFLYNE 91 (100)
T ss_pred EcCCCCcEEEECC--EEEEEEEh
Confidence 8899999998877 89988863
No 4
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=36.91 E-value=36 Score=26.79 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCccchhhhhhhhhhhCCCcceEEEeeecccc
Q 032559 31 AGCTEEYSVVERSLQHGGEEESLMLEGDIGGG 62 (138)
Q Consensus 31 aGctEEY~Vi~R~l~~~~~ee~l~lEgDiGGG 62 (138)
+.+.+-.++-++--++.....+|+|+||+|-|
T Consensus 6 ~~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAG 37 (149)
T COG0802 6 PDEEATLALGERLAEALKAGDVVLLSGDLGAG 37 (149)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCC
Confidence 34444555556666667799999999999987
No 5
>PHA02969 hypothetical protein; Provisional
Probab=34.46 E-value=14 Score=28.53 Aligned_cols=13 Identities=46% Similarity=1.009 Sum_probs=11.1
Q ss_pred eeecCCccchhhh
Q 032559 27 EYRSAGCTEEYSV 39 (138)
Q Consensus 27 E~rsaGctEEY~V 39 (138)
-|+|.||-|||+-
T Consensus 86 sfkskgcyeey~~ 98 (111)
T PHA02969 86 SFKSKGCYEEYKK 98 (111)
T ss_pred hhcccccHHHhcC
Confidence 4789999999973
No 6
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=33.03 E-value=15 Score=25.56 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=34.1
Q ss_pred chhhhhhhhhhhCCCcceEEEeeecccceEEEEEeeccCCCCc
Q 032559 35 EEYSVVERSLQHGGEEESLMLEGDIGGGLILQRKLTIPKDNPK 77 (138)
Q Consensus 35 EEY~Vi~R~l~~~~~ee~l~lEgDiGGGLvl~R~I~i~k~~pk 77 (138)
+-++-++..+++...++-+.+-.|++||-..+.-+....+.++
T Consensus 42 ~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~ 84 (116)
T PF03610_consen 42 DFEEKLEEAIEELDEGDGVLILTDLGGGSPFNEAARLLLDKPN 84 (116)
T ss_dssp HHHHHHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTT
T ss_pred HHHHHHHHHHHhccCCCcEEEEeeCCCCccchHHHHHhccCCC
Confidence 3456788888898888889999999999887766666666665
No 7
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=31.25 E-value=1.3e+02 Score=23.17 Aligned_cols=50 Identities=26% Similarity=0.612 Sum_probs=30.0
Q ss_pred hhhhhh--hhhhCCCcceEEEeeecccceEEEEEeeccCCCCceEEeeceeEEee
Q 032559 37 YSVVER--SLQHGGEEESLMLEGDIGGGLILQRKLTIPKDNPKIFKIDSKILARK 89 (138)
Q Consensus 37 Y~Vi~R--~l~~~~~ee~l~lEgDiGGGLvl~R~I~i~k~~pki~~I~SsI~Ars 89 (138)
|++... .|...+...++.+..+.|.|+.+.|...+.+++ ..||=+|...+
T Consensus 72 f~~~~~~~~l~~~~~~~~vtf~~~~~~g~~i~k~ytf~~~~---Y~~~~~i~~~n 123 (270)
T PF14849_consen 72 FSVSQKSYTLKEGGDSQSVTFTAQLGNGLTITKTYTFKPDS---YLVDLEISVTN 123 (270)
T ss_dssp -B-S-SEEE--TT-SEEEEEEEEE-TTS-EEEEEEEEETT-----EEEEEEEEE-
T ss_pred EEEcCCceeeccCCCceEEEEEEECCCCEEEEEEEEEcCCc---EEEEEEEEEEC
Confidence 555543 234456889999999999999999999999884 44454555444
No 8
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=30.99 E-value=18 Score=27.01 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=17.3
Q ss_pred cchhhhhhhhhhhCCCcceEE--EeeecccceEEE
Q 032559 34 TEEYSVVERSLQHGGEEESLM--LEGDIGGGLILQ 66 (138)
Q Consensus 34 tEEY~Vi~R~l~~~~~ee~l~--lEgDiGGGLvl~ 66 (138)
.+||+-.-...+|......-- =.=||||||.|.
T Consensus 36 ~~e~~~~A~~~Aq~~~~~~~~~~gkV~lGGGl~m~ 70 (126)
T PF12757_consen 36 NEEWNRKALERAQANEEKRDENAGKVNLGGGLFMD 70 (126)
T ss_pred HHHHHHHHHHHHHHhHhhcccCCCeeeCCCCcccC
Confidence 455555555555554111111 124899999875
No 9
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=30.90 E-value=16 Score=26.26 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=17.7
Q ss_pred eeeeccceeecCCccchhhhhhh
Q 032559 20 YEEYCGTEYRSAGCTEEYSVVER 42 (138)
Q Consensus 20 YEEysgtE~rsaGctEEY~Vi~R 42 (138)
|.+|+|+|..-.| |+|.+++-
T Consensus 62 ~~~y~g~ev~~~~--~~y~iv~e 82 (91)
T PRK14533 62 FSKYAGTEIKIDD--EDYIIIDV 82 (91)
T ss_pred EccCCCeEEEECC--EEEEEEEh
Confidence 7889999998776 89988874
No 10
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=28.01 E-value=46 Score=25.42 Aligned_cols=60 Identities=32% Similarity=0.417 Sum_probs=43.3
Q ss_pred ecccceEEEEEeeccCCCCceEEee-cee---EEeeeccC---------CCCcceeEEeeeCCeeeeeeccccc
Q 032559 58 DIGGGLILQRKLTIPKDNPKIFKID-SKI---LARKVGAG---------SGGFSRKFSSVSSGTVNLELWSEER 118 (138)
Q Consensus 58 DiGGGLvl~R~I~i~k~~pki~~I~-SsI---~ArsVGAg---------SGGfSrlftaig~g~vnleLWSeeR 118 (138)
.+||+| ..++-..|-+++-++-++ ..| ++|.+.+| .+|.+|++-.+++-.-.+-|||.+|
T Consensus 55 ~~gG~l-~~~~~~~p~~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~~ 127 (127)
T COG3324 55 GAGGGL-MARPGSPPGGGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPAR 127 (127)
T ss_pred ccccee-ccCCcCCCCCCCEEEEEecCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecCC
Confidence 555554 566666666888888887 444 34555555 3568899999999999999999765
No 11
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=27.51 E-value=27 Score=31.17 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=11.5
Q ss_pred EEeeeccCCCCccee
Q 032559 86 LARKVGAGSGGFSRK 100 (138)
Q Consensus 86 ~ArsVGAgSGGfSrl 100 (138)
-+|-.|||+|||==.
T Consensus 282 ~gKl~GaG~gGFllf 296 (333)
T COG2605 282 GGKLSGAGGGGFLLF 296 (333)
T ss_pred hceeeccCCccEEEE
Confidence 367889999999533
No 12
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=27.42 E-value=42 Score=24.95 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=18.8
Q ss_pred eeccCCCCceEEeeceeEEeee
Q 032559 69 LTIPKDNPKIFKIDSKILARKV 90 (138)
Q Consensus 69 I~i~k~~pki~~I~SsI~ArsV 90 (138)
..+||++.|.++|+|+--++.|
T Consensus 11 f~lp~~s~k~v~IsS~tTt~eV 32 (96)
T cd01778 11 LPLPKDTAKHLHISSKTTVREV 32 (96)
T ss_pred EeccCCceeEEEEecCCcHHHH
Confidence 4567999999999999888765
No 13
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=27.14 E-value=22 Score=22.14 Aligned_cols=32 Identities=34% Similarity=0.492 Sum_probs=28.3
Q ss_pred ceEEEEEeeccCCCCceEEeeceeEEeeeccC
Q 032559 62 GLILQRKLTIPKDNPKIFKIDSKILARKVGAG 93 (138)
Q Consensus 62 GLvl~R~I~i~k~~pki~~I~SsI~ArsVGAg 93 (138)
|+.-.+...||.+.-.-+++..++..|-.|.|
T Consensus 18 G~~~~~~~~i~~~~Iq~v~~~q~~~~r~~g~~ 49 (80)
T PF03703_consen 18 GLFSKRTTIIPLDRIQSVSIKQNPLQRLFGLG 49 (80)
T ss_pred CeEEEEEEEEEhhHeEEEEEEcCHHHHhCccE
Confidence 88889999999999999999999998888764
No 14
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.85 E-value=60 Score=24.34 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=25.6
Q ss_pred EEEeeecccceEEEEEeeccCCCCceEEeeceeEE
Q 032559 53 LMLEGDIGGGLILQRKLTIPKDNPKIFKIDSKILA 87 (138)
Q Consensus 53 l~lEgDiGGGLvl~R~I~i~k~~pki~~I~SsI~A 87 (138)
.-.+|.-|||||-- +.-.+.+.+-|+||.+++-
T Consensus 31 ~ev~g~aggGlVtV--~~~G~~ev~~v~Idp~l~d 63 (105)
T COG0718 31 KEVTGKAGGGLVTV--TINGKGEVKSVEIDPSLLD 63 (105)
T ss_pred cEEeeecCCcEEEE--EEeCCCcEEEEEeCHHHcC
Confidence 45789999999953 4457778888899887753
No 15
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=26.79 E-value=1.5e+02 Score=22.30 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=32.0
Q ss_pred ccceEEEEEeeccCCCCceEEeeceeEEeeeccCCCCcce
Q 032559 60 GGGLILQRKLTIPKDNPKIFKIDSKILARKVGAGSGGFSR 99 (138)
Q Consensus 60 GGGLvl~R~I~i~k~~pki~~I~SsI~ArsVGAgSGGfSr 99 (138)
+.|+|--+-.....+.-.++.-.+.+++|+.-+|.-|||.
T Consensus 117 ~~giv~~~~~v~Nq~Ge~V~~~~~~~~~r~~~~~~~~~~~ 156 (159)
T PRK13692 117 GTQIIVTKNIVTNEEGDVVQETYTTLAGRAGEDGEEGFSD 156 (159)
T ss_pred CceEEEEEEEEEcCCCCEEEEEEEEEEEecCCcCCccccc
Confidence 4467766666666666678899999999999999999984
No 16
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=25.70 E-value=2e+02 Score=18.81 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=44.8
Q ss_pred CCcceEEEeeecccceEEEEEeeccCCCCceEEeeceeEEeeec---cCCCCccee-EEeeeCCeeeeeeccccccCCCC
Q 032559 48 GEEESLMLEGDIGGGLILQRKLTIPKDNPKIFKIDSKILARKVG---AGSGGFSRK-FSSVSSGTVNLELWSEERPVSKQ 123 (138)
Q Consensus 48 ~~ee~l~lEgDiGGGLvl~R~I~i~k~~pki~~I~SsI~ArsVG---AgSGGfSrl-ftaig~g~vnleLWSeeRpVSk~ 123 (138)
|+.=.+.|...-+-|..-.-.. ++..+..+++.....+.. .|+||.-.. |++..+|+.++.+ ..-||-.+.
T Consensus 6 g~~~~I~L~~npstGY~W~~~~----~~~~l~l~~~~~~~~~~~~~~vG~~g~~~f~f~a~~~G~~~i~~-~y~r~we~~ 80 (92)
T PF09394_consen 6 GDTFEIELPENPSTGYSWSLSS----DSDGLQLVSEEYIPDNSPSGLVGAPGTRTFTFKALKPGTTTIKF-EYRRPWEKG 80 (92)
T ss_dssp TSEEEEEEEEBCCGTBEEEECT----STTTEEEEEEEEEESSTSSTSSTSSEEEEEEEEESSSEEEEEEE-EEEBTTTBS
T ss_pred CCEEEEEECCCCCCCeEEEEec----CCCeEEEcCCcEEeCCCCcCCCCCCcEEEEEEEEecCeeEEEEE-EEECcCCCC
Confidence 4444566777666666544332 333333346666665444 455565554 8888666666654 334666666
Q ss_pred CCeeEeeeeeE
Q 032559 124 SPLAVSHEYEV 134 (138)
Q Consensus 124 tPL~IsH~Yev 134 (138)
++ .-...|.|
T Consensus 81 ~~-~~~~~~~V 90 (92)
T PF09394_consen 81 SP-IKTFTITV 90 (92)
T ss_dssp TT-SEEEEEEE
T ss_pred Cc-cEEEEEEE
Confidence 66 33444444
No 17
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=25.49 E-value=62 Score=24.13 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=14.1
Q ss_pred hhCCCcceEEEeeecccc
Q 032559 45 QHGGEEESLMLEGDIGGG 62 (138)
Q Consensus 45 ~~~~~ee~l~lEgDiGGG 62 (138)
+......+++|.||+|-|
T Consensus 10 ~~l~~g~vi~L~GdLGaG 27 (123)
T PF02367_consen 10 QILKPGDVILLSGDLGAG 27 (123)
T ss_dssp HHHSS-EEEEEEESTTSS
T ss_pred HhCCCCCEEEEECCCCCC
Confidence 344677899999999998
No 18
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=23.34 E-value=26 Score=24.79 Aligned_cols=21 Identities=38% Similarity=0.812 Sum_probs=16.9
Q ss_pred eeeeccceeecCCccchhhhhhh
Q 032559 20 YEEYCGTEYRSAGCTEEYSVVER 42 (138)
Q Consensus 20 YEEysgtE~rsaGctEEY~Vi~R 42 (138)
|.+|+|+|+.--| ++|.+++.
T Consensus 66 ~~~~~g~~v~~~~--~~y~i~~~ 86 (93)
T cd00320 66 FPKYAGTEVKLDG--EEYLILRE 86 (93)
T ss_pred ECCCCceEEEECC--EEEEEEEH
Confidence 7889999998765 78888764
No 19
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=23.09 E-value=18 Score=29.28 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=10.3
Q ss_pred eeccCCCCccee
Q 032559 89 KVGAGSGGFSRK 100 (138)
Q Consensus 89 sVGAgSGGfSrl 100 (138)
-+|||+|+|+..
T Consensus 81 DiG~gtG~~t~~ 92 (228)
T TIGR00478 81 DVGSSTGGFTDC 92 (228)
T ss_pred EcccCCCHHHHH
Confidence 589999999765
No 20
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=22.63 E-value=1.2e+02 Score=20.32 Aligned_cols=54 Identities=30% Similarity=0.441 Sum_probs=38.6
Q ss_pred ceEEEE---EeeccCCCCceEEeecee--EEeeec-cCCCCcceeEEeeeCCeeeeeecc
Q 032559 62 GLILQR---KLTIPKDNPKIFKIDSKI--LARKVG-AGSGGFSRKFSSVSSGTVNLELWS 115 (138)
Q Consensus 62 GLvl~R---~I~i~k~~pki~~I~SsI--~ArsVG-AgSGGfSrlftaig~g~vnleLWS 115 (138)
+|++++ ++.||.++-.-+...... .-|..| +|-||+...|..=+.|.+.|=..+
T Consensus 9 ~l~I~~~~~~~~Ip~~~I~~v~~~~~~~~~~R~~G~~~~~~~~G~F~~~~~G~~~~y~t~ 68 (100)
T PF10882_consen 9 GLIIRWPFGKITIPLAEIESVELVDDLPPGIRTFGSGGFGYYSGRFRNKGYGKVRLYATR 68 (100)
T ss_pred EEEEEEccccEEEEHHHcEEEEeccccCcceEEEEEcCCCccEEEEEeCCCcEEEEEEEC
Confidence 444444 456888777776666664 467777 447778888998888999887776
No 21
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=22.49 E-value=28 Score=24.76 Aligned_cols=21 Identities=38% Similarity=0.812 Sum_probs=17.1
Q ss_pred eeeeccceeecCCccchhhhhhh
Q 032559 20 YEEYCGTEYRSAGCTEEYSVVER 42 (138)
Q Consensus 20 YEEysgtE~rsaGctEEY~Vi~R 42 (138)
|.+|+|+|..--| ++|.+++.
T Consensus 67 f~~~~g~ev~~~~--~~y~iv~~ 87 (95)
T PRK00364 67 FGKYAGTEVKIDG--EEYLILRE 87 (95)
T ss_pred EcCCCCeEEEECC--EEEEEEEH
Confidence 7889999988754 88988875
No 22
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=22.07 E-value=52 Score=20.88 Aligned_cols=18 Identities=44% Similarity=0.754 Sum_probs=16.1
Q ss_pred cCCCCccceeeeeecCce
Q 032559 3 HFPSGTQWLHSRVDVNGY 20 (138)
Q Consensus 3 H~PSg~qWl~sr~e~~GY 20 (138)
.+|+|.++..+-+.+|||
T Consensus 36 ~lP~g~~~v~~S~~~~g~ 53 (53)
T TIGR01451 36 ILPSGTTFVSNSVTVNGV 53 (53)
T ss_pred cCCCCCEEEeCcEEECCC
Confidence 479999999999999987
No 23
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=21.53 E-value=35 Score=26.67 Aligned_cols=14 Identities=43% Similarity=0.795 Sum_probs=10.2
Q ss_pred eeEEeeeccCCCCc
Q 032559 84 KILARKVGAGSGGF 97 (138)
Q Consensus 84 sI~ArsVGAgSGGf 97 (138)
-+.--|-|||||=|
T Consensus 25 NV~GSSAGAGSGeF 38 (142)
T PF06658_consen 25 NVQGSSAGAGSGEF 38 (142)
T ss_pred cccccccccCccHH
Confidence 34455779999977
No 24
>PF12503 CMV_1a_C: Cucumber mosaic virus 1a protein C terminal ; InterPro: IPR022184 This domain family is found in viruses, and is approximately 90 amino acids in length. The family is found in association with PF01443 from PFAM, PF01660 from PFAM. There is a conserved GLG sequence motif. 1a protein is the major virulence factor of the (Cucumber mosaic virus. The Ns strain of CMV causes necrotic lesions to Nicotiana spp. while other strains cause systemic mosaic. The determinant of the pathogenesis of these different strains is the specific amino acid residue at the 461 residue of the 1a protein. ; GO: 0008168 methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=21.34 E-value=45 Score=24.78 Aligned_cols=15 Identities=53% Similarity=1.367 Sum_probs=11.3
Q ss_pred ccCCCCccceeeeeecCcee
Q 032559 2 AHFPSGTQWLHSRVDVNGYE 21 (138)
Q Consensus 2 ~H~PSg~qWl~sr~e~~GYE 21 (138)
+|+|+| +||+ -+|||
T Consensus 33 vHf~~G-rWm~----P~~~~ 47 (85)
T PF12503_consen 33 VHFPNG-RWMY----PEGYE 47 (85)
T ss_pred EEecCC-ceec----CCCeE
Confidence 599988 7998 55664
No 25
>PF13330 Mucin2_WxxW: Mucin-2 protein WxxW repeating region
Probab=20.69 E-value=49 Score=22.84 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=9.7
Q ss_pred CCCeeEeeeeeEEe
Q 032559 123 QSPLAVSHEYEVIK 136 (138)
Q Consensus 123 ~tPL~IsH~Yev~~ 136 (138)
|+|-.+||.|||+-
T Consensus 73 Q~~~~~C~DYeVR~ 86 (90)
T PF13330_consen 73 QPGGQICYDYEVRF 86 (90)
T ss_pred CCCCCcCCCeeEEE
Confidence 33444499999984
No 26
>PRK14629 hypothetical protein; Provisional
Probab=20.53 E-value=89 Score=22.96 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=24.3
Q ss_pred ceEEEeeecccceEEEEEeec-cCCCCceEEeeceeE
Q 032559 51 ESLMLEGDIGGGLILQRKLTI-PKDNPKIFKIDSKIL 86 (138)
Q Consensus 51 e~l~lEgDiGGGLvl~R~I~i-~k~~pki~~I~SsI~ 86 (138)
+....||-.|||+|- |.+ .+...+-++||..++
T Consensus 27 ~~~~veg~aggGlVk---V~~nG~~~v~~i~Idp~ll 60 (99)
T PRK14629 27 SQIVVCGRAGSDVVV---VEMNGEFNVKKVSIKEEFF 60 (99)
T ss_pred hccEEEEEecCCEEE---EEEEcCccEEEEEECHHHc
Confidence 456789999999984 444 666777778887765
Done!