Query 032559
Match_columns 138
No_of_seqs 21 out of 23
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 04:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cio_B Inhibitor of cysteine p 59.7 42 0.0014 23.5 9.0 79 46-125 18-108 (121)
2 1yph_E Chymotrypsin A, chain C 32.6 77 0.0026 20.1 4.5 40 56-104 44-83 (97)
3 1m9u_A Earthworm fibrinolytic 27.4 36 0.0012 24.2 2.4 43 56-104 188-230 (241)
4 3gon_A Phosphomevalonate kinas 24.4 26 0.0009 25.9 1.2 15 84-98 285-299 (335)
5 3bs6_A Inner membrane protein 23.9 1.2E+02 0.004 23.2 4.8 32 44-75 85-116 (280)
6 3bx1_D BASI, alpha-amylase/sub 23.9 65 0.0022 24.2 3.3 9 59-67 29-37 (181)
7 3hp7_A Hemolysin, putative; st 23.4 9.1 0.00031 30.6 -1.6 13 88-100 90-102 (291)
8 1r8o_A STI, kunitz trypsin inh 23.2 64 0.0022 22.2 2.9 8 60-67 27-34 (96)
9 2k75_A Uncharacterized protein 22.7 68 0.0023 21.6 2.9 26 105-132 47-72 (106)
10 3rm2_H Thrombin heavy chain; s 22.5 1.1E+02 0.0037 21.5 4.1 42 56-104 202-243 (259)
11 4i8h_A Cationic trypsin, beta- 22.3 61 0.0021 22.6 2.7 36 56-104 174-209 (223)
12 3tvj_B Mannan-binding lectin s 22.2 1.7E+02 0.0059 20.2 5.0 42 56-104 186-228 (242)
13 3s69_A Thrombin-like enzyme de 22.0 63 0.0022 22.6 2.7 36 56-104 177-213 (234)
14 3mhw_U Urokinase-type plasmino 21.9 1.4E+02 0.0048 20.8 4.6 40 56-104 195-234 (247)
15 1pcq_O Groes protein; chaperon 21.6 19 0.00064 25.3 -0.1 21 20-42 67-88 (97)
16 1si5_H Scatter factor, hepatoc 21.0 73 0.0025 22.7 3.0 40 56-104 176-215 (240)
17 3gov_B MAsp-1; complement, ser 20.9 1.8E+02 0.006 20.3 4.9 42 56-104 195-236 (251)
18 2plw_A Ribosomal RNA methyltra 20.9 17 0.00057 24.7 -0.5 12 89-100 28-39 (201)
19 4e7n_A Snake-venom thrombin-li 20.7 72 0.0025 22.3 2.8 36 56-104 181-217 (238)
20 3opn_A Putative hemolysin; str 20.6 11 0.00037 28.1 -1.6 12 89-100 43-54 (232)
21 1rtf_B (TC)-T-PA, two chain ti 20.1 1.6E+02 0.0056 20.8 4.7 40 56-104 200-239 (252)
No 1
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=59.68 E-value=42 Score=23.52 Aligned_cols=79 Identities=24% Similarity=0.226 Sum_probs=52.0
Q ss_pred hCCCcceEEEeeecccceEEEEEeeccCC-CCceEEeeceeEEeeec----------cCCCCccee-EEeeeCCeeeeee
Q 032559 46 HGGEEESLMLEGDIGGGLILQRKLTIPKD-NPKIFKIDSKILARKVG----------AGSGGFSRK-FSSVSSGTVNLEL 113 (138)
Q Consensus 46 ~~~~ee~l~lEgDiGGGLvl~R~I~i~k~-~pki~~I~SsI~ArsVG----------AgSGGfSrl-ftaig~g~vnleL 113 (138)
+.|+.=.|.|+..-+=|..-+....-.+. ++.++.|++..+....+ -|+||.... |.|..+|+..+.|
T Consensus 18 ~~Ge~~~I~L~~NPtTGY~W~~~~~~~~~l~~~~~~v~~~y~~~~~~~~~~~~~~~~vG~gG~~~~~fka~~~G~~~i~~ 97 (121)
T 2cio_B 18 VIGETFTIELESNPTTGYTWLRSGLAGTELSDCTFAIQSKFNNRAPHDNHKNHRRLLVGAGGTMVLEVKALKAGKHTLSL 97 (121)
T ss_pred cCCCEEEEEeCCCCCCCeEEEEecCccccCCCccEEEeeeEEcCCCCcccccccccEeCCCceEEEEEEEecCceEEEEE
Confidence 34566678888888888877766543333 66667777666655433 466787666 9999888777776
Q ss_pred ccccccCCCCCC
Q 032559 114 WSEERPVSKQSP 125 (138)
Q Consensus 114 WSeeRpVSk~tP 125 (138)
- --||-.++++
T Consensus 98 ~-Y~RpWe~~~~ 108 (121)
T 2cio_B 98 A-YGRPWVGFNA 108 (121)
T ss_pred E-EECccCCCCC
Confidence 2 2466665543
No 2
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Probab=32.63 E-value=77 Score=20.12 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=21.8
Q ss_pred eeecccceEEEEEeeccCCCCceEEeeceeEEeeeccCCCCcceeEEee
Q 032559 56 EGDIGGGLILQRKLTIPKDNPKIFKIDSKILARKVGAGSGGFSRKFSSV 104 (138)
Q Consensus 56 EgDiGGGLvl~R~I~i~k~~pki~~I~SsI~ArsVGAgSGGfSrlftai 104 (138)
.||-||.|+... .+...++ .|+....+.+..++-..||.+
T Consensus 44 ~GDSGGPL~~~~-----~~~~~l~----GIvS~g~~c~~~~~p~vyt~V 83 (97)
T 1yph_E 44 MGDSGGPLVCKK-----NGAWTLV----GIVSWGSSTCSTSTPGVYARV 83 (97)
T ss_dssp TTCTTCEEEEEE-----TTEEEEE----EEEEECCTTCCTTSEEEEEEH
T ss_pred cCCCCCcEEEEe-----CCeEEEE----EEEEeCCCCCCCCCCeEEEEH
Confidence 489999998754 1112222 344333344444555667654
No 3
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Probab=27.39 E-value=36 Score=24.18 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=23.1
Q ss_pred eeecccceEEEEEeeccCCCCceEEeeceeEEeeeccCCCCcceeEEee
Q 032559 56 EGDIGGGLILQRKLTIPKDNPKIFKIDSKILARKVGAGSGGFSRKFSSV 104 (138)
Q Consensus 56 EgDiGGGLvl~R~I~i~k~~pki~~I~SsI~ArsVGAgSGGfSrlftai 104 (138)
.||-||.|+... +...++=|-|-++....|++..++-..||.+
T Consensus 188 ~GDSGgPL~~~~------~~~~l~Gi~S~~~~~g~~C~~~~~p~vyt~V 230 (241)
T 1m9u_A 188 NGDSGGPLNCPD------GGTRVVGVTSWVVSSGLGACLPDYPSVYTRV 230 (241)
T ss_dssp TTCTTCEEEEES------SSEEEEEEEEECCBCTTSCBCTTSCEEEEEG
T ss_pred cCcCCccEEEeC------CCEEEEEEEEEeccCCCCccCCCCCEEEEEh
Confidence 489999998751 3344555554432211233333455567654
No 4
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=24.37 E-value=26 Score=25.88 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=11.5
Q ss_pred eeEEeeeccCCCCcc
Q 032559 84 KILARKVGAGSGGFS 98 (138)
Q Consensus 84 sI~ArsVGAgSGGfS 98 (138)
...||.-|||.||+-
T Consensus 285 g~~akltGAG~Ggc~ 299 (335)
T 3gon_A 285 QAVAKSSGAGGGDCG 299 (335)
T ss_dssp SEEEEECTTCSSSEE
T ss_pred CcEEEEccccchheE
Confidence 346899999998853
No 5
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli}
Probab=23.93 E-value=1.2e+02 Score=23.18 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=25.6
Q ss_pred hhhCCCcceEEEeeecccceEEEEEeeccCCC
Q 032559 44 LQHGGEEESLMLEGDIGGGLILQRKLTIPKDN 75 (138)
Q Consensus 44 l~~~~~ee~l~lEgDiGGGLvl~R~I~i~k~~ 75 (138)
|.....+-.|.|..+.++|+.+.|.+++.+++
T Consensus 85 l~~~~~~~~Vtlt~~~~~G~~~~ktytf~~~~ 116 (280)
T 3bs6_A 85 LAEGQNELQVPMTYTDAAGNTFTKTFVLKRGD 116 (280)
T ss_dssp CCTTCSEEEEEEEEECTTCCEEEEEEEEETTC
T ss_pred ccCCCceeEEEEEEECCCCeEEEEEEEEcCCc
Confidence 33333457899999999999999999998754
No 6
>3bx1_D BASI, alpha-amylase/subtilisin inhibitor; complex (proteinase/inhibitor) enzyme inhibition, savinase, barley alpha-amylase/subtilisin inhibitor; 1.85A {Hordeum vulgare} SCOP: b.42.4.1 PDB: 1ava_C 2iwt_B*
Probab=23.93 E-value=65 Score=24.23 Aligned_cols=9 Identities=44% Similarity=0.841 Sum_probs=5.0
Q ss_pred cccceEEEE
Q 032559 59 IGGGLILQR 67 (138)
Q Consensus 59 iGGGLvl~R 67 (138)
-||||.|.+
T Consensus 29 ~GGGl~l~~ 37 (181)
T 3bx1_D 29 HGGGLTMAP 37 (181)
T ss_dssp GCCCEEEEE
T ss_pred CCCeEEEeC
Confidence 356666554
No 7
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=23.37 E-value=9.1 Score=30.56 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=11.0
Q ss_pred eeeccCCCCccee
Q 032559 88 RKVGAGSGGFSRK 100 (138)
Q Consensus 88 rsVGAgSGGfSrl 100 (138)
=-+|||+|+|+..
T Consensus 90 LDiGcGTG~~t~~ 102 (291)
T 3hp7_A 90 IDIGASTGGFTDV 102 (291)
T ss_dssp EEETCTTSHHHHH
T ss_pred EecCCCccHHHHH
Confidence 3589999999975
No 8
>1r8o_A STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor, beta-trefoil fold, hydrolase inhibitor; 1.83A {Copaifera langsdorffii} SCOP: b.42.4.1
Probab=23.18 E-value=64 Score=22.19 Aligned_cols=8 Identities=63% Similarity=1.389 Sum_probs=5.2
Q ss_pred ccceEEEE
Q 032559 60 GGGLILQR 67 (138)
Q Consensus 60 GGGLvl~R 67 (138)
||||.|.+
T Consensus 27 GGGl~l~~ 34 (96)
T 1r8o_A 27 GGGLVLAK 34 (96)
T ss_dssp CCSEEEEC
T ss_pred CCeEEEeC
Confidence 66777654
No 9
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=22.66 E-value=68 Score=21.62 Aligned_cols=26 Identities=0% Similarity=0.247 Sum_probs=22.3
Q ss_pred eCCeeeeeeccccccCCCCCCeeEeeee
Q 032559 105 SSGTVNLELWSEERPVSKQSPLAVSHEY 132 (138)
Q Consensus 105 g~g~vnleLWSeeRpVSk~tPL~IsH~Y 132 (138)
.||++.+-||.+. +....-++|..-|
T Consensus 47 eTG~I~~tlW~~~--l~~Gdvv~i~ng~ 72 (106)
T 2k75_A 47 DTARIRISSFGKQ--LQDSDVVRIDNAR 72 (106)
T ss_dssp SSCEEEEEEESSC--CCTTEEEEEEEEE
T ss_pred CCCeEEEEEEcCc--cCCCCEEEEEeeE
Confidence 8999999999998 8888888887544
No 10
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Probab=22.49 E-value=1.1e+02 Score=21.54 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=24.0
Q ss_pred eeecccceEEEEEeeccCCCCceEEeeceeEEeeeccCCCCcceeEEee
Q 032559 56 EGDIGGGLILQRKLTIPKDNPKIFKIDSKILARKVGAGSGGFSRKFSSV 104 (138)
Q Consensus 56 EgDiGGGLvl~R~I~i~k~~pki~~I~SsI~ArsVGAgSGGfSrlftai 104 (138)
.||.||.|+..... .+...++ .|+....+++..++-..||.+
T Consensus 202 ~GDsGgPL~~~~~~---~~~~~l~----GI~S~g~~C~~~~~p~vyt~V 243 (259)
T 3rm2_H 202 EGDSGGPFVMKSPF---NNRWYQM----GIVSWGEGCDRDGKYGFYTHV 243 (259)
T ss_dssp TTCTTCEEEEECTT---TCCEEEE----EEEEECSSSSCTTCCEEEEET
T ss_pred CCCCCCeeEEEECC---CCCEEEE----EEEEECCCCCCCCCCeEEEEH
Confidence 57999999875420 1122333 344444556655666677765
No 11
>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...
Probab=22.25 E-value=61 Score=22.60 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=22.5
Q ss_pred eeecccceEEEEEeeccCCCCceEEeeceeEEeeeccCCCCcceeEEee
Q 032559 56 EGDIGGGLILQRKLTIPKDNPKIFKIDSKILARKVGAGSGGFSRKFSSV 104 (138)
Q Consensus 56 EgDiGGGLvl~R~I~i~k~~pki~~I~SsI~ArsVGAgSGGfSrlftai 104 (138)
.||.||.|+... +++ .|+....+++..++-..||.+
T Consensus 174 ~GDsGgPl~~~~---------~l~----Gi~S~g~~c~~~~~p~vyt~v 209 (223)
T 4i8h_A 174 QGDSGGPVVCSG---------KLQ----GIVSWGSGCAQKNKPGVYTKV 209 (223)
T ss_dssp TTCTTCEEEETT---------EEE----EEEEECSSSSCTTCCEEEEEG
T ss_pred CCCCCCcEEECC---------EEE----EEEEcCCCCCCCCCCeEEEEH
Confidence 489999998632 233 344444556655666667765
No 12
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*
Probab=22.16 E-value=1.7e+02 Score=20.22 Aligned_cols=42 Identities=24% Similarity=0.459 Sum_probs=23.7
Q ss_pred eeecccceEEEEEeeccCCCCceEEeeceeEEee-eccCCCCcceeEEee
Q 032559 56 EGDIGGGLILQRKLTIPKDNPKIFKIDSKILARK-VGAGSGGFSRKFSSV 104 (138)
Q Consensus 56 EgDiGGGLvl~R~I~i~k~~pki~~I~SsI~Ars-VGAgSGGfSrlftai 104 (138)
.||-||.|+.... ++.+-+.+ .|+... .+++..++-..||.+
T Consensus 186 ~GDsGgPL~~~~~-----~~~~~~l~--Gi~S~g~~~C~~~~~p~vyt~V 228 (242)
T 3tvj_B 186 RGDSGGALVFLDS-----ETERWFVG--GIVSWGSMNCGEAGQYGVYTKV 228 (242)
T ss_dssp TTCTTCEEEEEET-----TTTEEEEE--EEEEEEESSTTCTTCCEEEEEG
T ss_pred cCCCCCeEEEEeC-----CCCcEEEE--EEEEeCCCCCCCCCCCeEEEEH
Confidence 4899999987532 22222211 333333 566666666677765
No 13
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*
Probab=22.00 E-value=63 Score=22.56 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=22.4
Q ss_pred eeecccceEEEEEeeccCCCCceEEeeceeEEeeec-cCCCCcceeEEee
Q 032559 56 EGDIGGGLILQRKLTIPKDNPKIFKIDSKILARKVG-AGSGGFSRKFSSV 104 (138)
Q Consensus 56 EgDiGGGLvl~R~I~i~k~~pki~~I~SsI~ArsVG-AgSGGfSrlftai 104 (138)
.||-||.|+... +++ .|+....+ ++.+++-..||.+
T Consensus 177 ~GDSGgPL~~~~---------~l~----Gi~S~g~~~C~~~~~p~vyt~V 213 (234)
T 3s69_A 177 GGDSGGPLICNG---------QFQ----GIVSFGAHPCGQGLKPGVYTKV 213 (234)
T ss_dssp TTCTTCEEEETT---------EEE----EEEEECCSSTTCTTCCEEEEEG
T ss_pred CCCCccceEEcC---------EEE----EEEEEcccccCCCCCCcEEeeH
Confidence 389999998632 233 34444433 5666666778776
No 14
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...
Probab=21.95 E-value=1.4e+02 Score=20.83 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=23.1
Q ss_pred eeecccceEEEEEeeccCCCCceEEeeceeEEeeeccCCCCcceeEEee
Q 032559 56 EGDIGGGLILQRKLTIPKDNPKIFKIDSKILARKVGAGSGGFSRKFSSV 104 (138)
Q Consensus 56 EgDiGGGLvl~R~I~i~k~~pki~~I~SsI~ArsVGAgSGGfSrlftai 104 (138)
.||.||.|+...+ +...++ .|+....+++..++-..||.+
T Consensus 195 ~GDSGgPl~~~~~-----~~~~l~----Gi~S~g~~c~~~~~p~vyt~V 234 (247)
T 3mhw_U 195 QGDSGGPLVCSLQ-----GRMTLT----GIVSWGRGCALKDKPGVYTRV 234 (247)
T ss_dssp TTCTTCEEEEEET-----TEEEEE----EEEEECSSSSBTTBCEEEEEG
T ss_pred CCCCCCeEEEEEC-----CCEEEE----EEEEECCCCCCCCCCeEEEEH
Confidence 5899999987541 212233 344444455555566667765
No 15
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=21.56 E-value=19 Score=25.34 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=16.9
Q ss_pred eee-eccceeecCCccchhhhhhh
Q 032559 20 YEE-YCGTEYRSAGCTEEYSVVER 42 (138)
Q Consensus 20 YEE-ysgtE~rsaGctEEY~Vi~R 42 (138)
|.+ |+|+|..-.| |||-+++.
T Consensus 67 f~k~y~Gtevk~dg--eey~i~re 88 (97)
T 1pcq_O 67 FNDGYGVKSEKIDN--EEVLIMSE 88 (97)
T ss_dssp ECCCSSCEEEEETT--EEEEEEEG
T ss_pred ECCccCCeEEEECC--EEEEEEEh
Confidence 778 9999988766 78887763
No 16
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Probab=20.97 E-value=73 Score=22.71 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=23.6
Q ss_pred eeecccceEEEEEeeccCCCCceEEeeceeEEeeeccCCCCcceeEEee
Q 032559 56 EGDIGGGLILQRKLTIPKDNPKIFKIDSKILARKVGAGSGGFSRKFSSV 104 (138)
Q Consensus 56 EgDiGGGLvl~R~I~i~k~~pki~~I~SsI~ArsVGAgSGGfSrlftai 104 (138)
.||.||.|+... .+...++=|-| ...|++..++-..||.+
T Consensus 176 ~GDSGgPL~~~~-----~~~~~l~Gi~S----~g~~C~~~~~p~vyt~V 215 (240)
T 1si5_H 176 EGDYGGPLVCEQ-----HKMRMVLGVIV----PGRGCAIPNRPGIFVRV 215 (240)
T ss_dssp TTCTTCEEEEEC-----SSSEEEEEEEC----SCSCSSCTTCCEEEEEG
T ss_pred cCCCCCcEEEEE-----CCcEEEEEEEE----ECCCCCCCCCCcEEEEH
Confidence 389999998754 22233444433 33455555666677766
No 17
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B
Probab=20.95 E-value=1.8e+02 Score=20.30 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=23.9
Q ss_pred eeecccceEEEEEeeccCCCCceEEeeceeEEeeeccCCCCcceeEEee
Q 032559 56 EGDIGGGLILQRKLTIPKDNPKIFKIDSKILARKVGAGSGGFSRKFSSV 104 (138)
Q Consensus 56 EgDiGGGLvl~R~I~i~k~~pki~~I~SsI~ArsVGAgSGGfSrlftai 104 (138)
.||-||.|+.... ++-+-+.+ .|+....+++..++-..||.+
T Consensus 195 ~GDsGgPl~~~~~-----~~~~~~l~--Gi~S~g~~C~~~~~p~vyt~V 236 (251)
T 3gov_B 195 AGDSGGPMVTLNR-----ERGQWYLV--GTVSWGDDCGKKDRYGVYSYI 236 (251)
T ss_dssp TTCTTCEEEEECT-----TTCCEEEE--EEEEECSSSSCSSCCEEEEET
T ss_pred CCCCCCeEEeeeC-----CCCcEEEE--EEEEECCCCCCCCCCEEEEEH
Confidence 5899999987521 12221111 344444566666666677765
No 18
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=20.87 E-value=17 Score=24.67 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=10.1
Q ss_pred eeccCCCCccee
Q 032559 89 KVGAGSGGFSRK 100 (138)
Q Consensus 89 sVGAgSGGfSrl 100 (138)
-+|+|+|+++..
T Consensus 28 DlGcG~G~~~~~ 39 (201)
T 2plw_A 28 DIGCYPGSWCQV 39 (201)
T ss_dssp EESCTTCHHHHH
T ss_pred EeCCCCCHHHHH
Confidence 579999998865
No 19
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}
Probab=20.66 E-value=72 Score=22.32 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=21.0
Q ss_pred eeecccceEEEEEeeccCCCCceEEeeceeEEeeec-cCCCCcceeEEee
Q 032559 56 EGDIGGGLILQRKLTIPKDNPKIFKIDSKILARKVG-AGSGGFSRKFSSV 104 (138)
Q Consensus 56 EgDiGGGLvl~R~I~i~k~~pki~~I~SsI~ArsVG-AgSGGfSrlftai 104 (138)
.||-||.|+...+ ++ .|+....+ ++..++-..||.+
T Consensus 181 ~GDSGgPL~~~~~---------l~----Gi~S~g~~~C~~~~~p~vyt~V 217 (238)
T 4e7n_A 181 KGDSGGPLICNGQ---------FQ----GIASWGDDPCAQPHKPAAYTKV 217 (238)
T ss_dssp TTCTTCEEEETTE---------EE----EEEEECCSSTTCTTCCEEEEES
T ss_pred CCCCCcceEECCE---------EE----EEEEEeCCCCCCCCCCeEEEEh
Confidence 3899999986432 33 34433333 4444555667765
No 20
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=20.63 E-value=11 Score=28.09 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=10.2
Q ss_pred eeccCCCCccee
Q 032559 89 KVGAGSGGFSRK 100 (138)
Q Consensus 89 sVGAgSGGfSrl 100 (138)
-+|||+|+|+..
T Consensus 43 DiGcGtG~~t~~ 54 (232)
T 3opn_A 43 DIGSSTGGFTDV 54 (232)
T ss_dssp EETCTTSHHHHH
T ss_pred EEccCCCHHHHH
Confidence 579999999965
No 21
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Probab=20.10 E-value=1.6e+02 Score=20.79 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=22.9
Q ss_pred eeecccceEEEEEeeccCCCCceEEeeceeEEeeeccCCCCcceeEEee
Q 032559 56 EGDIGGGLILQRKLTIPKDNPKIFKIDSKILARKVGAGSGGFSRKFSSV 104 (138)
Q Consensus 56 EgDiGGGLvl~R~I~i~k~~pki~~I~SsI~ArsVGAgSGGfSrlftai 104 (138)
.||-||.|+... .+...++ .|+....+++..++-..||.+
T Consensus 200 ~GDsGgPL~~~~-----~~~~~l~----Gi~S~g~~C~~~~~p~vyt~V 239 (252)
T 1rtf_B 200 QGDSGGPLVCLN-----DGRMTLV----GIISWGLGCGQKDVPGVYTKV 239 (252)
T ss_dssp TTCTTCEEEEEE-----TTEEEEE----EEEEECSSSSCTTCCEEEEEG
T ss_pred cCCCcCceEEEe-----CCcEEEE----EEEEEcCCCCCCCCCeEEEEH
Confidence 489999998753 1222233 344444456555666677765
Done!