BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032560
         (138 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
          Length = 377

 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 17/20 (85%)

Query: 105 KDYFDFIEGSLKGKSEQELS 124
           K ++ FIEG L+GKSE+EL+
Sbjct: 168 KVFYRFIEGKLEGKSERELA 187


>pdb|3EMR|A Chain A, Crystal Structure Analysis Of The Ectoine Hydroxylase Ectd
           From Salibacillus Salexigens
          Length = 310

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 13/56 (23%)

Query: 80  YLKKSEENKAKNDKERMDSYYKRNY---KDYFDFIEGSLKGKSEQELSESEKGILE 132
           Y  +S++N+A   KE++DSY K  +   K++F          SE E+ + +K I E
Sbjct: 24  YTDRSKDNQAPITKEQLDSYEKNGFLQIKNFF----------SEDEVIDXQKAIFE 69


>pdb|4F0R|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
           Chromobacterium Violaceum (Target Nysgrc-019589) Bound
           Zn And 5'- Methylthioadenosine (Unproductive Complex)
 pdb|4F0S|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
           Chromobacterium Violaceum (Target Nysgrc-019589) With
           Bound Inosine
          Length = 447

 Score = 25.4 bits (54), Expect = 9.4,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 53  RRGLLLSSVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDK 93
           R GLL   +VAA  V+ +D++ +L  ++   +  N A N K
Sbjct: 244 RLGLLSPRLVAAHXVHLNDAEVELAARHGLSTAHNPASNXK 284


>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
           Phosphosulfate Synthetase 1
 pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
           Phosphosulfate Synthetase 1
 pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
 pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
 pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
 pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
          Length = 630

 Score = 25.4 bits (54), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 93  KERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKGIL 131
           K+RMD YY   + + F+FI G+   K  +E  +  +G +
Sbjct: 569 KKRMD-YYDSEHHEDFEFISGTRMRKLAREGQKPPEGFM 606


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.127    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,176,630
Number of Sequences: 62578
Number of extensions: 106267
Number of successful extensions: 302
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 18
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)