BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032560
         (138 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A0JP86|LAMC1_XENTR Laminin subunit gamma-1 OS=Xenopus tropicalis GN=lamc1 PE=2 SV=1
          Length = 1592

 Score = 32.7 bits (73), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 26/133 (19%)

Query: 9    LMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFH----DIGRRGL-LLSSVVA 63
            L+  T+      +L+++ ++R+ A+         K A+  H    + G R L + +++ +
Sbjct: 1197 LLQKTLASENQTALDIEELNRKYAQAKDIARELEKQASKVHAEAEEAGNRALQIYANLTS 1256

Query: 64   APQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSL-------- 115
             P ++     T  LQ     +E +K + + E +DS   R  +DY D  E           
Sbjct: 1257 VPSID-----TTALQ-----NEADKIQKEAEELDSLIDRKLRDYEDLREDMRGREMEVKN 1306

Query: 116  ---KGKSEQELSE 125
               KGK+EQ+ ++
Sbjct: 1307 LLDKGKTEQQTAD 1319


>sp|Q9SL03|CALS2_ARATH Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=3
          Length = 1950

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 73  KTQLLQKYLKKSEENKA---KNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSES 126
           KT LLQ+  +++E   A   K+D   M S+Y+  YK Y   ++ +       +L+++
Sbjct: 87  KTALLQRLERENETTLAGRQKSDAREMQSFYQHYYKKYIQALQNAADKADRAQLTKA 143


>sp|Q9LYS6|CALS6_ARATH Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3
           SV=2
          Length = 1921

 Score = 29.6 bits (65), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 73  KTQLLQKYLKKSEENK---AKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQ 121
           KT LL +  K+ EE K   AKND   + +YY+  Y+ Y    EG    K E+
Sbjct: 95  KTYLLHRLEKEEEETKPQLAKNDPREIQAYYQNFYEKYIK--EGETSRKPEE 144


>sp|Q8RKJ2|TARL_BACPZ Putative polyribitolphosphotransferase OS=Bacillus subtilis subsp.
           spizizenii (strain ATCC 23059 / NRRL B-14472 / W23)
           GN=tarL PE=3 SV=1
          Length = 619

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 96  MDSYYKRN--YKDYFDFIEGSLKGKSEQELS 124
           +D Y ++   Y DYFDFI G L   S+Q +S
Sbjct: 538 VDDYIRKRDFYYDYFDFIPGPLAKTSDQMIS 568


>sp|Q9AUE0|CALS1_ARATH Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2
          Length = 1950

 Score = 29.3 bits (64), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 73  KTQLLQKYLKKSEENKA---KNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSES 126
           KT LLQ+  +++E   A   K+D   M S+Y+  YK Y   +  +       +L+++
Sbjct: 87  KTALLQRLERENETTLAGRQKSDAREMQSFYQHYYKKYIQALLNAADKADRAQLTKA 143


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.124    0.329 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,273,518
Number of Sequences: 539616
Number of extensions: 1646565
Number of successful extensions: 6568
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 6507
Number of HSP's gapped (non-prelim): 116
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)