Query 032560
Match_columns 138
No_of_seqs 35 out of 37
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 03:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00078 photosystem I reactio 100.0 2.8E-42 6E-47 261.0 8.7 95 42-138 25-122 (122)
2 PF05479 PsaN: Photosystem I r 99.9 1.5E-25 3.2E-30 173.3 -5.1 103 14-125 1-107 (138)
3 PLN00054 photosystem I reactio 99.6 1E-15 2.2E-20 118.9 3.2 65 48-112 25-94 (139)
4 PF12650 DUF3784: Domain of un 62.6 5.4 0.00012 27.7 1.7 28 74-101 20-47 (97)
5 PF01418 HTH_6: Helix-turn-hel 61.0 7 0.00015 26.2 2.0 16 122-137 13-28 (77)
6 PF00357 Integrin_alpha: Integ 56.4 5.3 0.00011 21.2 0.6 10 99-108 4-13 (15)
7 COG3171 Uncharacterized protei 48.3 11 0.00024 29.4 1.5 32 103-138 69-101 (119)
8 PF13308 YARHG: YARHG domain 47.8 24 0.00052 24.3 3.0 18 119-136 61-78 (81)
9 PF13412 HTH_24: Winged helix- 42.1 23 0.00051 21.2 2.0 16 123-138 1-16 (48)
10 PF11022 DUF2611: Protein of u 40.4 27 0.00058 24.7 2.3 20 71-90 51-70 (71)
11 PTZ00111 DNA replication licen 38.0 37 0.00079 33.7 3.6 74 32-133 44-118 (915)
12 PF03304 Mlp: Mlp lipoprotein 37.6 26 0.00056 27.9 2.1 44 91-136 49-92 (152)
13 PF07252 DUF1433: Protein of u 37.4 24 0.00051 25.7 1.7 17 91-107 4-20 (88)
14 PF11546 CompInhib_SCIN: Staph 35.9 23 0.00049 27.5 1.5 28 77-106 50-77 (114)
15 PRK15117 ABC transporter perip 34.3 50 0.0011 26.4 3.3 55 75-129 33-91 (211)
16 PF00034 Cytochrom_C: Cytochro 31.9 46 0.001 20.2 2.2 17 122-138 74-91 (91)
17 KOG3381 Uncharacterized conser 30.4 28 0.00061 28.4 1.2 14 85-98 129-142 (161)
18 PRK14101 bifunctional glucokin 29.8 72 0.0016 29.0 3.8 17 122-138 353-369 (638)
19 PF07583 PSCyt2: Protein of un 29.6 1.3E+02 0.0027 24.5 4.9 79 45-135 21-107 (208)
20 PF10750 DUF2536: Protein of u 28.1 35 0.00075 24.4 1.2 31 108-138 5-35 (68)
21 TIGR03481 HpnM hopanoid biosyn 21.5 82 0.0018 24.9 2.4 53 76-129 33-87 (198)
22 PF04652 DUF605: Vta1 like; I 20.9 1.2E+02 0.0027 25.2 3.4 55 77-138 3-57 (380)
23 PF11332 DUF3134: Protein of u 20.8 53 0.0011 23.4 1.0 12 126-137 20-31 (73)
24 PF07295 DUF1451: Protein of u 20.4 2.3E+02 0.005 22.1 4.6 60 75-135 14-79 (146)
No 1
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=100.00 E-value=2.8e-42 Score=261.01 Aligned_cols=95 Identities=63% Similarity=0.941 Sum_probs=89.8
Q ss_pred hhhhhhhccchhhHHH--Hhhhhhcc-CCCCCchhHHHHHHHHHhhHHhHhhhhHHHHhHHHhhhhhhhhhhhccccCCC
Q 032560 42 AKAAAAFHDIGRRGLL--LSSVVAAP-QVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGK 118 (138)
Q Consensus 42 ~~~~~~~~~~gRR~~l--Laa~~a~~-~a~n~~s~s~lIq~ylkKSeeNKekNDKERLd~yYkRnY~dyF~~~eG~~~~k 118 (138)
+-..++++++.|||+| |++++++| +++ +++.+|||+||+||+|||++|||||||+||||||+|||+||||++++|
T Consensus 25 ~~~~a~rng~srr~llt~l~staaip~~~~--~Sr~~liq~llkkSeeNKakndkERLDdYYKRNykDYF~fveG~~r~k 102 (122)
T PLN00078 25 AAMLAQRNGISRRCLLTFLTSTAAIPEAGS--ESRKALLQEYLKKSEENKEKNDKERLDDYYKRNYKDYFGLIEGPAREK 102 (122)
T ss_pred HHHHHHhcchhHHHHHHHHHhhccCCCCcC--chHHHHHHHHHHHhHHhHHHhHHHHHHHHHHHhHHHHHHHhccccccC
Confidence 4457889999999999 89999997 455 889999999999999999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHHhhcC
Q 032560 119 SEQELSESEKGILEWLKTNK 138 (138)
Q Consensus 119 ~~~~lsesek~Il~wL~knk 138 (138)
++++|||+||+|++||++||
T Consensus 103 ke~eLsEsEK~IleWL~KNK 122 (122)
T PLN00078 103 KEDELTESEKGILEWLDKNK 122 (122)
T ss_pred ChhhcCHHHHHHHHHHHccC
Confidence 99999999999999999997
No 2
>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.
Probab=99.89 E-value=1.5e-25 Score=173.30 Aligned_cols=103 Identities=34% Similarity=0.387 Sum_probs=36.6
Q ss_pred HhhhcccccchhhhhhccccCCCcchhhhhhhhhhccchhhHHH-HhhhhhccCCCCCchhHHHHHHHHHhhHHhHhhhh
Q 032560 14 VTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLL-LSSVVAAPQVNNDDSKTQLLQKYLKKSEENKAKND 92 (138)
Q Consensus 14 vtvnk~as~nv~av~~~~~k~~~~~~~~~~~~~~~~~~gRR~~l-Laa~~a~~~a~n~~s~s~lIq~ylkKSeeNKekND 92 (138)
|+++||+++|+|+||...++++.. ++ ++..||.+| |+++++++++++++++.++|++||+||++|||+||
T Consensus 1 ~~~~k~asa~~qai~~~ka~~~~~-------~~--~~~~Raall~Laa~l~~tAa~a~~A~A~l~~dyL~KSkaNKelND 71 (138)
T PF05479_consen 1 VVGLKPASAKVQAIRAAKAKRVVV-------RA--SDGRRAALLGLAAVLAATAASASSARAGLLEDYLEKSKANKELND 71 (138)
T ss_dssp ----------------------------------------------------------------SSSSS-SSHSSSSSTT
T ss_pred CCccchhhcccchhhhccCCCccc-------cc--CccchHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHhHhhhhhhh
Confidence 689999999999999998887665 22 334455555 79999988888789999999999999999999999
Q ss_pred HHHHh---HHHhhhhhhhhhhhccccCCCCccccch
Q 032560 93 KERMD---SYYKRNYKDYFDFIEGSLKGKSEQELSE 125 (138)
Q Consensus 93 KERLd---~yYkRnY~dyF~~~eG~~~~k~~~~lse 125 (138)
||||+ ++|.|+|++||++.+.+..-.--++|.+
T Consensus 72 KkRlaTs~aNfaR~~tv~fg~c~fP~n~~gc~~la~ 107 (138)
T PF05479_consen 72 KKRLATSYANFARAYTVQFGTCKFPENFTGCQDLAK 107 (138)
T ss_dssp TSS-TSSSSSSTSGTT--TSTSSSSS-SSSSSSS-S
T ss_pred HHHhhhhhhhhhhheeeecccccCCccchhhHHHHH
Confidence 99999 6667999999999998876544445543
No 3
>PLN00054 photosystem I reaction center subunit N; Provisional
Probab=99.57 E-value=1e-15 Score=118.89 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=58.5
Q ss_pred hccchhhHHH--HhhhhhccCCCCCchhHHHHHHHHHhhHHhHhhhhHHHHh---HHHhhhhhhhhhhhc
Q 032560 48 FHDIGRRGLL--LSSVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMD---SYYKRNYKDYFDFIE 112 (138)
Q Consensus 48 ~~~~gRR~~l--Laa~~a~~~a~n~~s~s~lIq~ylkKSeeNKekNDKERLd---~yYkRnY~dyF~~~e 112 (138)
.++.|||.+| |+++++++++...+++.++|++||+||++|||.|||+||. ++|.|.|++||++.+
T Consensus 25 ~~~~grraa~~~Laa~l~~~aa~~~~AnAgv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~G~C~ 94 (139)
T PLN00054 25 DASDGRRAALVGLAATLFSTAAAAASANAGVISDLLAKSKANKELNDKKRLATSGANFARSRTVQDGTCK 94 (139)
T ss_pred ccccchHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhhhhhhHHhhhhcchhhhhheeeeccccc
Confidence 4568899888 7899888887778999999999999999999999999999 779999999999754
No 4
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=62.61 E-value=5.4 Score=27.67 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhHHhHhhhhHHHHhHHHh
Q 032560 74 TQLLQKYLKKSEENKAKNDKERMDSYYK 101 (138)
Q Consensus 74 s~lIq~ylkKSeeNKekNDKERLd~yYk 101 (138)
.-||.+|--.|+|.||+.|+++|-.+..
T Consensus 20 ~~LIaGyntms~eEk~~~D~~~l~r~~g 47 (97)
T PF12650_consen 20 YFLIAGYNTMSKEEKEKYDKKKLCRFMG 47 (97)
T ss_pred ccchhhcccCCHHHHHHhhHHHHHHHHH
Confidence 3588999999999999999999874433
No 5
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=61.05 E-value=7 Score=26.18 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=12.9
Q ss_pred ccchhHHHHHHHHhhc
Q 032560 122 ELSESEKGILEWLKTN 137 (138)
Q Consensus 122 ~lsesek~Il~wL~kn 137 (138)
.||++|+.|++|+-+|
T Consensus 13 ~ls~~e~~Ia~yil~~ 28 (77)
T PF01418_consen 13 SLSPTEKKIADYILEN 28 (77)
T ss_dssp GS-HHHHHHHHHHHH-
T ss_pred hCCHHHHHHHHHHHhC
Confidence 5999999999999876
No 6
>PF00357 Integrin_alpha: Integrin alpha cytoplasmic region; InterPro: IPR018184 Some alpha subunits are cleaved post- translationally to produce a heavy and a light chain linked by a disulphide bond [, ]. Integrin alpha chains share a conserved sequence which is found at the beginning of the cytoplasmic domain, just after the end of the transmembrane region. Within the N-terminal domain of alpha subunits, seven sequence repeats, each of approximately 60 amino acids, have been found []. It has been predicted that these repeats assume the beta-propeller fold. The domains contain seven four-stranded beta-sheets arranged in a torus around a pseudosymmetry axis []. Integrin ligands and a putative Mg2+ ion are predicted to bind to the upper face of the propeller, in a manner analogous to the way in which the trimeric G-protein beta subunit (G beta) (which also has a beta-propeller fold) binds the G protein alpha subunit []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences []. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first ten residues of the alpha-subunit cytoplasmic domain appear to form an alpha helix that is terminated by a proline residue. The remainder of the domain is highly acidic in nature and this loops back to contact the membrane-proximal lysine anchor residue. This entry represents the conserved site of the C-terminal integrin alpha chain. ; PDB: 2LKJ_A 2LKE_A 2K8O_A 1DPK_A 2K9J_A 1DPQ_A 1S4W_A 1M8O_A 2K1A_A 2KNC_A ....
Probab=56.37 E-value=5.3 Score=21.20 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=8.2
Q ss_pred HHhhhhhhhh
Q 032560 99 YYKRNYKDYF 108 (138)
Q Consensus 99 yYkRnY~dyF 108 (138)
||||+|++..
T Consensus 4 FFKR~~~~~~ 13 (15)
T PF00357_consen 4 FFKRQRPPQM 13 (15)
T ss_dssp HHHHHHHHCC
T ss_pred cccccCcccc
Confidence 8999998753
No 7
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.30 E-value=11 Score=29.39 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=23.1
Q ss_pred hhhhhhhhhccccCCCCccccchhHHHHHH-HHhhcC
Q 032560 103 NYKDYFDFIEGSLKGKSEQELSESEKGILE-WLKTNK 138 (138)
Q Consensus 103 nY~dyF~~~eG~~~~k~~~~lsesek~Il~-wL~knk 138 (138)
.|.|+|+++-=.-.++ +.|+++++.. ||+.++
T Consensus 69 ~~~~~~glvcl~~~g~----~~e~~r~~v~~WLe~r~ 101 (119)
T COG3171 69 GYLDWEGLVCLQRIGK----CDEEHRASVRKWLEARP 101 (119)
T ss_pred cceeeeeeehHhhcCC----ccHHHHHHHHHHHHhCC
Confidence 4667776665444454 9999998877 999764
No 8
>PF13308 YARHG: YARHG domain
Probab=47.77 E-value=24 Score=24.34 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=15.6
Q ss_pred CccccchhHHHHHHHHhh
Q 032560 119 SEQELSESEKGILEWLKT 136 (138)
Q Consensus 119 ~~~~lsesek~Il~wL~k 136 (138)
.+..||+.|+.-++.|++
T Consensus 61 ~~~~l~~~E~~ni~~i~~ 78 (81)
T PF13308_consen 61 SDSVLNEIEKANIDLIKK 78 (81)
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 567799999999999875
No 9
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=42.12 E-value=23 Score=21.16 Aligned_cols=16 Identities=38% Similarity=0.744 Sum_probs=12.2
Q ss_pred cchhHHHHHHHHhhcC
Q 032560 123 LSESEKGILEWLKTNK 138 (138)
Q Consensus 123 lsesek~Il~wL~knk 138 (138)
|++.++.|+..|.+|.
T Consensus 1 l~~~~~~Il~~l~~~~ 16 (48)
T PF13412_consen 1 LDETQRKILNYLRENP 16 (48)
T ss_dssp --HHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHcC
Confidence 6789999999998864
No 10
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=40.39 E-value=27 Score=24.71 Aligned_cols=20 Identities=20% Similarity=0.569 Sum_probs=14.8
Q ss_pred chhHHHHHHHHHhhHHhHhh
Q 032560 71 DSKTQLLQKYLKKSEENKAK 90 (138)
Q Consensus 71 ~s~s~lIq~ylkKSeeNKek 90 (138)
+.+..||++||++-++..+|
T Consensus 51 ~DeE~fIk~fl~~~~~e~~k 70 (71)
T PF11022_consen 51 SDEEKFIKEFLKEHEKEEKK 70 (71)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 34557999999988776443
No 11
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=37.98 E-value=37 Score=33.73 Aligned_cols=74 Identities=22% Similarity=0.404 Sum_probs=41.8
Q ss_pred ccCCCcchhhhhhhhhhccchhhHHHHhhhhhccCCCCCchhH-HHHHHHHHhhHHhHhhhhHHHHhHHHhhhhhhhhhh
Q 032560 32 AKTPKTTGAKAKAAAAFHDIGRRGLLLSSVVAAPQVNNDDSKT-QLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDF 110 (138)
Q Consensus 32 ~k~~~~~~~~~~~~~~~~~~gRR~~lLaa~~a~~~a~n~~s~s-~lIq~ylkKSeeNKekNDKERLd~yYkRnY~dyF~~ 110 (138)
|+||-+.-----|++-++++||-..|=-.- ..+- .|++.-| ++=+||+.+|| ++|+||-+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~ 105 (915)
T PTZ00111 44 GKTPNLVRRIRNARNDIGDLGRETFMDQRD---------VARLPFLLDNRL--------EELSERFTNFL-KNFTEFSDV 105 (915)
T ss_pred CCChHHHHHHHHhhhhhhhhhHHHhcChhh---------hhhcchhhhhHH--------HHHHHHHHHHH-HHhhhhccc
Confidence 445555444445677778888876552111 1111 1222222 25567887776 577888776
Q ss_pred hccccCCCCccccchhHHHHHHH
Q 032560 111 IEGSLKGKSEQELSESEKGILEW 133 (138)
Q Consensus 111 ~eG~~~~k~~~~lsesek~Il~w 133 (138)
++ ++++|+.|.+|
T Consensus 106 ~~----------~~~~~~~~~~~ 118 (915)
T PTZ00111 106 LE----------FKDEQQSKPEY 118 (915)
T ss_pred cc----------cchhhhhhhhh
Confidence 64 66677766664
No 12
>PF03304 Mlp: Mlp lipoprotein family; InterPro: IPR004983 The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species []. This family were previously known as 2.9 lipoprotein genes []. These surface expressed genes may represent new candidate vaccinogens for Lyme disease []. Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.
Probab=37.57 E-value=26 Score=27.93 Aligned_cols=44 Identities=18% Similarity=0.457 Sum_probs=31.6
Q ss_pred hhHHHHhHHHhhhhhhhhhhhccccCCCCccccchhHHHHHHHHhh
Q 032560 91 NDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKGILEWLKT 136 (138)
Q Consensus 91 NDKERLd~yYkRnY~dyF~~~eG~~~~k~~~~lsesek~Il~wL~k 136 (138)
++-++..++.+..|+++|.|+..+..-.+ +|-.+...|-.||++
T Consensus 49 ~~~~~~~~~~K~k~~~ffdWLs~d~~kqK--El~~af~~vy~FLe~ 92 (152)
T PF03304_consen 49 EEIQGCNDDNKSKYKNFFDWLSKDIQKQK--ELLNAFTEVYNFLEK 92 (152)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhcCcHHHH--HHHHhHHHHHHHHHH
Confidence 34455667778899999999996655332 577777777777765
No 13
>PF07252 DUF1433: Protein of unknown function (DUF1433); InterPro: IPR009881 This family contains a number of hypothetical bacterial proteins of unknown function approximately 100 residues in length.; PDB: 2K3D_A.
Probab=37.43 E-value=24 Score=25.70 Aligned_cols=17 Identities=47% Similarity=0.921 Sum_probs=13.7
Q ss_pred hhHHHHhHHHhhhhhhh
Q 032560 91 NDKERMDSYYKRNYKDY 107 (138)
Q Consensus 91 NDKERLd~yYkRnY~dy 107 (138)
-+++|++-|++-||++|
T Consensus 4 ~qk~RIely~kyN~k~~ 20 (88)
T PF07252_consen 4 EQKERIELYFKYNYKNI 20 (88)
T ss_dssp HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHhhhccc
Confidence 47899999999999986
No 14
>PF11546 CompInhib_SCIN: Staphylococcal complement inhibitor SCIN ; InterPro: IPR021612 SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface []. An 18 residue stretch 31-48 is crucial for SCIN activity []. ; PDB: 3L3O_P 3OHX_P 3NMS_M 3L5N_M 3T49_C 3T4A_H 2WIN_P 2QFF_A 3T48_B 3T47_B ....
Probab=35.91 E-value=23 Score=27.49 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=19.0
Q ss_pred HHHHHHhhHHhHhhhhHHHHhHHHhhhhhh
Q 032560 77 LQKYLKKSEENKAKNDKERMDSYYKRNYKD 106 (138)
Q Consensus 77 Iq~ylkKSeeNKekNDKERLd~yYkRnY~d 106 (138)
+..||..|.=| +-...-||.||||+---
T Consensus 50 Lk~Ll~~s~vn--~LA~~sl~~yyKr~i~~ 77 (114)
T PF11546_consen 50 LKSLLDNSNVN--ALAAGSLNAYYKRTIMM 77 (114)
T ss_dssp HHHHHHTHHHH--HHHGGCS-HHHHHHHHH
T ss_pred HHHHHHHhhHH--HHHhccccHHHHHHHHH
Confidence 55667777666 45667789999997543
No 15
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=34.27 E-value=50 Score=26.38 Aligned_cols=55 Identities=9% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHHHHhhHHhHhh--hhHHHHhHHHhhhhhhhhhhhccccC--CCCccccchhHHH
Q 032560 75 QLLQKYLKKSEENKAK--NDKERMDSYYKRNYKDYFDFIEGSLK--GKSEQELSESEKG 129 (138)
Q Consensus 75 ~lIq~ylkKSeeNKek--NDKERLd~yYkRnY~dyF~~~eG~~~--~k~~~~lsesek~ 129 (138)
...++.++.=++++++ .|.+++...-....-.||+|..=+.. |+--..+|+.||.
T Consensus 33 ~~~~~vl~~l~~~~~~~~~~~~~~~~~v~~~l~p~~Df~~~s~~vLG~~wr~as~eQr~ 91 (211)
T PRK15117 33 EAAQKTFDRLKNEQPKIRANPDYLRTIVDQELLPYVQVKYAGALVLGRYYKDATPAQRE 91 (211)
T ss_pred HHHHHHHHHHHhCHHhhccCHHHHHHHHHHHccccCCHHHHHHHHhhhhhhhCCHHHHH
Confidence 3455666666666653 57777776666666666666543322 5555567888774
No 16
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=31.94 E-value=46 Score=20.24 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=13.4
Q ss_pred ccchhH-HHHHHHHhhcC
Q 032560 122 ELSESE-KGILEWLKTNK 138 (138)
Q Consensus 122 ~lsese-k~Il~wL~knk 138 (138)
.|||.| ..|++||+.-|
T Consensus 74 ~ls~~e~~~l~ayl~slk 91 (91)
T PF00034_consen 74 ILSDEEIADLAAYLRSLK 91 (91)
T ss_dssp TSSHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 588887 47999998765
No 17
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.41 E-value=28 Score=28.38 Aligned_cols=14 Identities=50% Similarity=0.601 Sum_probs=11.7
Q ss_pred HHhHhhhhHHHHhH
Q 032560 85 EENKAKNDKERMDS 98 (138)
Q Consensus 85 eeNKekNDKERLd~ 98 (138)
.=||..|||||..+
T Consensus 129 ~vNKQLnDKERVaA 142 (161)
T KOG3381|consen 129 AVNKQLNDKERVAA 142 (161)
T ss_pred HHHhhhccHHHHHH
Confidence 34999999999874
No 18
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=29.83 E-value=72 Score=28.97 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=15.1
Q ss_pred ccchhHHHHHHHHhhcC
Q 032560 122 ELSESEKGILEWLKTNK 138 (138)
Q Consensus 122 ~lsesek~Il~wL~knk 138 (138)
.||++||.|++|+-+|.
T Consensus 353 ~Lt~~E~~IA~yIl~n~ 369 (638)
T PRK14101 353 ALTPAERRVADLALNHP 369 (638)
T ss_pred hcCHHHHHHHHHHHhCH
Confidence 49999999999998873
No 19
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=29.63 E-value=1.3e+02 Score=24.54 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=48.0
Q ss_pred hhhhccchhhHHH-HhhhhhccC-------CCCCchhHHHHHHHHHhhHHhHhhhhHHHHhHHHhhhhhhhhhhhccccC
Q 032560 45 AAAFHDIGRRGLL-LSSVVAAPQ-------VNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLK 116 (138)
Q Consensus 45 ~~~~~~~gRR~~l-Laa~~a~~~-------a~n~~s~s~lIq~ylkKSeeNKekNDKERLd~yYkRnY~dyF~~~eG~~~ 116 (138)
.+....+=||.-| |+..+-+++ -..++.+..+|++||+.. +...++.+-+.|.+.+-+...-
T Consensus 21 ~add~~~lRRv~LDL~G~~PT~eEv~~Fl~d~~~~kr~~lVd~LL~sp----------~y~e~wa~~W~D~lr~~~~~~~ 90 (208)
T PF07583_consen 21 PADDATFLRRVYLDLTGLPPTPEEVRAFLADPSPDKREKLVDRLLASP----------EYAERWARHWLDLLRYADSGGY 90 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCChhHHHHHHHHHHCCc----------HHHHHHHHHHHHHHccCCCCCC
Confidence 4455667889888 665554432 223456778888888543 3567788888888877666544
Q ss_pred CCCccccchhHHHHHHHHh
Q 032560 117 GKSEQELSESEKGILEWLK 135 (138)
Q Consensus 117 ~k~~~~lsesek~Il~wL~ 135 (138)
+.+. .-..=...-+||.
T Consensus 91 ~~d~--~~~~~~~~r~wl~ 107 (208)
T PF07583_consen 91 ESDN--RRPNAWPYRDWLI 107 (208)
T ss_pred cccc--cccchhhHHHHHH
Confidence 3321 1223445667764
No 20
>PF10750 DUF2536: Protein of unknown function (DUF2536); InterPro: IPR019686 This entry represents proteins with unknown function appears to be restricted to Bacillus spp.
Probab=28.05 E-value=35 Score=24.42 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=21.7
Q ss_pred hhhhccccCCCCccccchhHHHHHHHHhhcC
Q 032560 108 FDFIEGSLKGKSEQELSESEKGILEWLKTNK 138 (138)
Q Consensus 108 F~~~eG~~~~k~~~~lsesek~Il~wL~knk 138 (138)
|+.|+--+.-=+...|.+=||.|-+|.+.||
T Consensus 5 ld~i~dKVEfFEA~~l~~LEkkIneqIe~Nk 35 (68)
T PF10750_consen 5 LDLIEDKVEFFEANDLQTLEKKINEQIEHNK 35 (68)
T ss_pred HHhhheeeeEEecchHHHHHHHHHHHHhcCc
Confidence 3444444443344568999999999999886
No 21
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=21.48 E-value=82 Score=24.94 Aligned_cols=53 Identities=21% Similarity=0.151 Sum_probs=23.3
Q ss_pred HHHHHHHhhHHhHhhhhHHHHhHHHhhhhhhhhhhhcc--ccCCCCccccchhHHH
Q 032560 76 LLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEG--SLKGKSEQELSESEKG 129 (138)
Q Consensus 76 lIq~ylkKSeeNKekNDKERLd~yYkRnY~dyF~~~eG--~~~~k~~~~lsesek~ 129 (138)
.+++.+..=++++.....+| ....+.-..+||+|..= -+=|+.-..+|+.||.
T Consensus 33 ~~~~vl~~l~~~~~~~~~~~-~~~l~~iv~~~~Df~~mar~vLG~~W~~~s~~Qr~ 87 (198)
T TIGR03481 33 LHGALLDVMKEAKKLGYQGR-YTKLAPAVREAFDLPAMARLTLGSSWTSLSPEQRR 87 (198)
T ss_pred HHHHHHHHHHhccccchhhH-HHHHHHHHHHhCCHHHHHHHHhhhhhhhCCHHHHH
Confidence 44445554444443222223 22223333345544332 2224445568888875
No 22
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=20.91 E-value=1.2e+02 Score=25.18 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=35.7
Q ss_pred HHHHHHhhHHhHhhhhHHHHhHHHhhhhhhhhhhhccccCCCCccccchhHHHHHHHHhhcC
Q 032560 77 LQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKGILEWLKTNK 138 (138)
Q Consensus 77 Iq~ylkKSeeNKekNDKERLd~yYkRnY~dyF~~~eG~~~~k~~~~lsesek~Il~wL~knk 138 (138)
|..||+++.|=...+ =+-+||-|-|-..-++-.+. +.+ +..+==-.+++|||+.|
T Consensus 3 i~~~l~~a~e~~~~~---p~v~Y~c~~ya~~~~l~~~~-~~~---e~~~~~~~Ll~~lE~~K 57 (380)
T PF04652_consen 3 ISPFLKRAQELEKRD---PVVAYYCRLYAVEQILKLKL-RSK---ECRQFLTSLLDKLEKMK 57 (380)
T ss_dssp HHHHHHHHHHHHHCT---HHHHHHHHHHHHHHHTT-TT---H---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcC---CEEhHHHHHHHHHHHcCCCC-CCh---hHHHHHHHHHHHHHHhh
Confidence 678888888766554 36799999998887765544 222 23344456788887653
No 23
>PF11332 DUF3134: Protein of unknown function (DUF3134); InterPro: IPR021481 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.79 E-value=53 Score=23.38 Aligned_cols=12 Identities=33% Similarity=0.977 Sum_probs=9.2
Q ss_pred hHHHHHHHHhhc
Q 032560 126 SEKGILEWLKTN 137 (138)
Q Consensus 126 sek~Il~wL~kn 137 (138)
.|--||+||+++
T Consensus 20 ~e~SlLdWLe~t 31 (73)
T PF11332_consen 20 QESSLLDWLEST 31 (73)
T ss_pred CccHHHHHHHHc
Confidence 345799999976
No 24
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=20.40 E-value=2.3e+02 Score=22.05 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=35.0
Q ss_pred HHHHHHHHhhHHhHh------hhhHHHHhHHHhhhhhhhhhhhccccCCCCccccchhHHHHHHHHh
Q 032560 75 QLLQKYLKKSEENKA------KNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKGILEWLK 135 (138)
Q Consensus 75 ~lIq~ylkKSeeNKe------kNDKERLd~yYkRnY~dyF~~~eG~~~~k~~~~lsesek~Il~wL~ 135 (138)
.-|+..++++++.-. +..-+++-+|-||+-.++-.+++. ......-.+.-=+..|.+||.
T Consensus 14 ~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~-~~~~~~~~~~lie~slw~~L~ 79 (146)
T PF07295_consen 14 EELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE-LREWLSPDLQLIEESLWDELS 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccccHHHHHHHHHHHHH
Confidence 456666666655321 122344569999999999988888 333322234444555666664
Done!