Query 032560
Match_columns 138
No_of_seqs 35 out of 37
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 04:13:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_N PSAN, PSI-N, photosyste 99.1 1.3E-13 4.5E-18 108.5 -9.7 63 49-111 56-125 (170)
2 3lw5_N Photosystem I-N subunit 98.0 1.8E-08 6.1E-13 72.4 -8.8 36 76-111 2-40 (85)
3 1e8e_A Cytochrome C''; oxidore 59.9 4.3 0.00015 30.3 1.9 35 92-137 84-119 (124)
4 3ux2_A MIP18 family protein FA 49.2 6.3 0.00022 29.3 1.4 14 85-98 101-114 (130)
5 1dw0_A Cytochrome C; asparagin 48.0 17 0.00057 26.4 3.4 36 90-136 75-111 (112)
6 2luv_A Integrin alpha-X; myris 53.5 3.9 0.00013 24.6 0.0 19 98-117 3-21 (35)
7 2lke_A Integrin alpha-M; myris 43.5 8.1 0.00028 21.7 0.9 16 98-114 3-18 (26)
8 4e81_A Chaperone protein DNAK; 42.4 26 0.00088 26.9 3.9 21 74-94 121-141 (219)
9 1k99_A Upstream binding factor 32.1 31 0.0011 23.1 2.6 28 78-107 58-85 (99)
10 2k8o_A Integrin alpha-L; beta 29.7 11 0.00038 25.0 -0.0 20 98-117 4-23 (60)
11 1a0p_A Site-specific recombina 28.7 1.1E+02 0.0037 21.4 5.1 56 74-135 3-58 (290)
12 3nrw_A Phage integrase/site-sp 28.3 1E+02 0.0034 19.6 4.5 54 73-134 9-63 (117)
13 1p4w_A RCSB; solution structur 26.8 40 0.0014 22.7 2.4 17 120-136 32-48 (99)
14 2hv8_D RAB11 family-interactin 25.7 1.2E+02 0.0039 20.3 4.5 25 71-101 23-47 (64)
15 3drq_C GP41 peptide epitope; H 25.6 46 0.0016 19.4 2.2 23 75-97 4-26 (35)
16 1c75_A Cytochrome C-553; heme, 24.6 70 0.0024 18.8 3.0 18 121-138 53-71 (71)
17 2qgu_A Probable signal peptide 23.6 48 0.0017 25.1 2.6 54 76-129 38-95 (211)
18 2z2t_D Fusion inhibitor peptid 23.1 75 0.0026 18.3 2.8 22 74-95 13-34 (36)
19 2wfg_A Cytosolic leucyl-tRNA s 20.7 86 0.0029 24.6 3.6 23 112-137 221-243 (261)
20 2k3d_A LIN0334 protein; alpha 20.6 44 0.0015 23.2 1.6 17 91-107 5-21 (87)
No 1
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=99.11 E-value=1.3e-13 Score=108.54 Aligned_cols=63 Identities=32% Similarity=0.539 Sum_probs=35.3
Q ss_pred ccchhhHHH--HhhhhhccCC--CCCchhHHHHHHHHHhhHHhHhhhhHHHHh---HHHhhhhhhhhhhh
Q 032560 49 HDIGRRGLL--LSSVVAAPQV--NNDDSKTQLLQKYLKKSEENKAKNDKERMD---SYYKRNYKDYFDFI 111 (138)
Q Consensus 49 ~~~gRR~~l--Laa~~a~~~a--~n~~s~s~lIq~ylkKSeeNKekNDKERLd---~yYkRnY~dyF~~~ 111 (138)
+..|||.+| |+++++++++ ++++++.++|++||+||++|||.|||+||. ++|.|.|+++|+.-
T Consensus 56 ~~~~rRaAl~~LaA~l~~~aa~~~~~sA~Agv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~GtC 125 (170)
T 2wsc_N 56 SDQGRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSC 125 (170)
T ss_dssp ------------------------------CCCCSCSCSSCSCSSSCCCSSCCSSSSSSCSCTTCCCSCS
T ss_pred ccchhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHhhhhhhhhhhHhhhhcccchhheeeeecccc
Confidence 356899776 7888887665 667899999999999999999999999998 89999999999864
No 2
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=97.98 E-value=1.8e-08 Score=72.40 Aligned_cols=36 Identities=36% Similarity=0.614 Sum_probs=32.9
Q ss_pred HHHHHHHhhHHhHhhhhHHHHh---HHHhhhhhhhhhhh
Q 032560 76 LLQKYLKKSEENKAKNDKERMD---SYYKRNYKDYFDFI 111 (138)
Q Consensus 76 lIq~ylkKSeeNKekNDKERLd---~yYkRnY~dyF~~~ 111 (138)
+|++||+||++|||.|||+||. ++|.|.|+++|+.-
T Consensus 2 v~~dllaks~aNKeLnDkKRlaTS~ANfaRs~TV~~G~C 40 (85)
T 3lw5_N 2 VIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSC 40 (85)
T ss_dssp CCCSCSCSSCCCSTTCCCSSCCSSSSSSTTTSSCCCSCS
T ss_pred cHHHHHHHhhhhhhhhhHHHhhhcccchhheeEeecccc
Confidence 4678999999999999999998 89999999999864
No 3
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*
Probab=59.91 E-value=4.3 Score=30.31 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=27.2
Q ss_pred hHHHHhHHHhhhhhhhhhhhccccCCCCccccchhHHH-HHHHHhhc
Q 032560 92 DKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKG-ILEWLKTN 137 (138)
Q Consensus 92 DKERLd~yYkRnY~dyF~~~eG~~~~k~~~~lsesek~-Il~wL~kn 137 (138)
|-......|+|||.|.|+- ++|+.||+ ++.||...
T Consensus 84 d~akVekwf~rnCn~vlgr-----------~cTa~EK~D~~ayL~s~ 119 (124)
T 1e8e_A 84 DIDKVEDEFTKHCNDILGA-----------DCSPSEKANFIAYLLTE 119 (124)
T ss_dssp CSTTHHHHHHHHHHHHTSS-----------CCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhHHHHcc-----------CCCHHHHHHHHHHHHHc
Confidence 3334567899999999863 59999997 78999764
No 4
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=49.16 E-value=6.3 Score=29.30 Aligned_cols=14 Identities=50% Similarity=0.646 Sum_probs=11.9
Q ss_pred HHhHhhhhHHHHhH
Q 032560 85 EENKAKNDKERMDS 98 (138)
Q Consensus 85 eeNKekNDKERLd~ 98 (138)
.=||..|||||..+
T Consensus 101 ~vnKQl~DKERvaA 114 (130)
T 3ux2_A 101 DINKQINDKERVAA 114 (130)
T ss_dssp CHHHHHHCHHHHHH
T ss_pred HHHHhhhhHHHHHH
Confidence 46999999999874
No 5
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=48.05 E-value=17 Score=26.43 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=28.6
Q ss_pred hhhHHHHhHHHhhhhhhhhhhhccccCCCCccccchhHHH-HHHHHhh
Q 032560 90 KNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKG-ILEWLKT 136 (138)
Q Consensus 90 kNDKERLd~yYkRnY~dyF~~~eG~~~~k~~~~lsesek~-Il~wL~k 136 (138)
--|-...+..|+||..|.|+- +.|..||+ ++.||..
T Consensus 75 ftD~akvekwf~rnc~~v~gr-----------~cta~EK~d~l~~l~~ 111 (112)
T 1dw0_A 75 FTDSARVEKWLGRNCNSVIGR-----------DCTPGEKADLLAWLAA 111 (112)
T ss_dssp TCCHHHHHHHHHHHHHHHHSS-----------CCCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhhhhHHHcc-----------cCCHHHHHHHHHHHHh
Confidence 356677888999999998852 58999997 7888863
No 6
>2luv_A Integrin alpha-X; myristoylated, DPC micelles, cell adhesion; NMR {Homo sapiens}
Probab=53.48 E-value=3.9 Score=24.58 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=14.4
Q ss_pred HHHhhhhhhhhhhhccccCC
Q 032560 98 SYYKRNYKDYFDFIEGSLKG 117 (138)
Q Consensus 98 ~yYkRnY~dyF~~~eG~~~~ 117 (138)
.||||+|++-|+ ..+....
T Consensus 3 GFFKR~~kEmme-~~~~~~~ 21 (35)
T 2luv_A 3 GFFKRQYKEMME-EANGQIA 21 (35)
Confidence 489999999998 5554444
No 7
>2lke_A Integrin alpha-M; myristoylated, DPC micelles, cell adhesion; NMR {Homo sapiens} PDB: 2lkj_A*
Probab=43.52 E-value=8.1 Score=21.69 Aligned_cols=16 Identities=38% Similarity=0.839 Sum_probs=12.3
Q ss_pred HHHhhhhhhhhhhhccc
Q 032560 98 SYYKRNYKDYFDFIEGS 114 (138)
Q Consensus 98 ~yYkRnY~dyF~~~eG~ 114 (138)
.||||+|++-+. ..+.
T Consensus 3 GFFKR~~ke~m~-~~~~ 18 (26)
T 2lke_A 3 GFFKRQYKDMMS-EGGP 18 (26)
T ss_dssp GGHHHHHHHHHH-HTSC
T ss_pred CchhhchHHHhh-ccCC
Confidence 489999999988 4433
No 8
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=42.36 E-value=26 Score=26.85 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhHHhHhhhhHH
Q 032560 74 TQLLQKYLKKSEENKAKNDKE 94 (138)
Q Consensus 74 s~lIq~ylkKSeeNKekNDKE 94 (138)
.+=|+++++..++.++.-.+.
T Consensus 121 ~eeI~~m~~~a~~~~~eD~~~ 141 (219)
T 4e81_A 121 EDEIQKMVRDAEANAEADRKF 141 (219)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccHHH
Confidence 356788888887776644433
No 9
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=32.12 E-value=31 Score=23.10 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=20.1
Q ss_pred HHHHHhhHHhHhhhhHHHHhHHHhhhhhhh
Q 032560 78 QKYLKKSEENKAKNDKERMDSYYKRNYKDY 107 (138)
Q Consensus 78 q~ylkKSeeNKekNDKERLd~yYkRnY~dy 107 (138)
+.|.++.++.|+.+.+|--. |+..|+||
T Consensus 58 ~~Y~~~A~~~k~~Y~~e~~~--y~~~~P~~ 85 (99)
T 1k99_A 58 MKYIQDFQREKQEFERNLAR--FREDHPDL 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHGG--GGGCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHCCCc
Confidence 56777778888888777444 66778876
No 10
>2k8o_A Integrin alpha-L; beta 2, beta 3, alternative splicing, calcium, cell adhesion, glycoprotein, magnesium, membrane, polymorphism, receptor; NMR {Homo sapiens}
Probab=29.72 E-value=11 Score=25.02 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=14.0
Q ss_pred HHHhhhhhhhhhhhccccCC
Q 032560 98 SYYKRNYKDYFDFIEGSLKG 117 (138)
Q Consensus 98 ~yYkRnY~dyF~~~eG~~~~ 117 (138)
-||||+|++-|+=..+....
T Consensus 4 GFFKR~~kE~me~~~~~~~~ 23 (60)
T 2k8o_A 4 GFFKRNLKEKIEAGRGVPNG 23 (60)
T ss_dssp STTHHHHHHTTTTSCCSSCS
T ss_pred chhhhcCHHHhhcccCCccc
Confidence 38999999998844444333
No 11
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=28.74 E-value=1.1e+02 Score=21.40 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhHHhHhhhhHHHHhHHHhhhhhhhhhhhccccCCCCccccchhHHHHHHHHh
Q 032560 74 TQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKGILEWLK 135 (138)
Q Consensus 74 s~lIq~ylkKSeeNKekNDKERLd~yYkRnY~dyF~~~eG~~~~k~~~~lsesek~Il~wL~ 135 (138)
.+++++|++--+..+. -.+.=-.-|.+....++.|+... +..-.++++.+ |.+|++
T Consensus 3 ~~~~~~~~~~~~~~~~--~s~~T~~~y~~~l~~~~~~~~~~--~~~~~~i~~~~--i~~~~~ 58 (290)
T 1a0p_A 3 LARIEQFLDALWLEKN--LAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDD--LQALLA 58 (290)
T ss_dssp HHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHHHHT--SCCTTTCCHHH--HHHHHH
T ss_pred hHHHHHHHHHHhhccC--CCHHHHHHHHHHHHHHHHHHHhc--CCChhhCCHHH--HHHHHH
Confidence 4678888765432221 11222233566666666666543 33445566554 666664
No 12
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=28.30 E-value=1e+02 Score=19.65 Aligned_cols=54 Identities=13% Similarity=0.285 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhHHhHhhhhHHHHhHHHhhhhhhhhhhhccccCCC-CccccchhHHHHHHHH
Q 032560 73 KTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGK-SEQELSESEKGILEWL 134 (138)
Q Consensus 73 ~s~lIq~ylkKSeeNKekNDKERLd~yYkRnY~dyF~~~eG~~~~k-~~~~lsesek~Il~wL 134 (138)
-.++|+.|++--+ ++-.+.=-.-|.+....|+.|.+. .+. +..++++.+ |.+|+
T Consensus 9 ~~~~~~~fl~~l~----~~~s~~Ti~~Y~~~l~~f~~~l~~--~~~~~l~~it~~~--i~~y~ 63 (117)
T 3nrw_A 9 PREARDRYLAHRQ----TDAADASIKSFRYRLKHFVEWAEE--RDITAMRELTGWK--LDEYE 63 (117)
T ss_dssp HHHHHHHHHHHHT----TTSCHHHHHHHHHHHHHHHHHHHH--TTCCSGGGCCHHH--HHHHH
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHH--cCCCChHHCCHHH--HHHHH
Confidence 3467788876433 333333345688888888888854 222 445566654 44554
No 13
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=26.79 E-value=40 Score=22.67 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.0
Q ss_pred ccccchhHHHHHHHHhh
Q 032560 120 EQELSESEKGILEWLKT 136 (138)
Q Consensus 120 ~~~lsesek~Il~wL~k 136 (138)
...||+.|+.|+.|+..
T Consensus 32 ~~~Lt~re~~Vl~l~~~ 48 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE 48 (99)
T ss_dssp SSSCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc
Confidence 56799999999988753
No 14
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=25.75 E-value=1.2e+02 Score=20.27 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=17.9
Q ss_pred chhHHHHHHHHHhhHHhHhhhhHHHHhHHHh
Q 032560 71 DSKTQLLQKYLKKSEENKAKNDKERMDSYYK 101 (138)
Q Consensus 71 ~s~s~lIq~ylkKSeeNKekNDKERLd~yYk 101 (138)
-++.++++.+.++-+.| .||.+|-.
T Consensus 23 ~s~deL~~~l~eqee~n------~~Le~YID 47 (64)
T 2hv8_D 23 VSRDELMEAIQKQEEIN------FRLQDYID 47 (64)
T ss_dssp SCHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 46889999998776666 46766654
No 15
>3drq_C GP41 peptide epitope; HIV-1, 2F5, NMAB, immune system; 2.00A {Homo sapiens} PDB: 3d0l_C 3drt_C 3egs_C
Probab=25.59 E-value=46 Score=19.41 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.2
Q ss_pred HHHHHHHHhhHHhHhhhhHHHHh
Q 032560 75 QLLQKYLKKSEENKAKNDKERMD 97 (138)
Q Consensus 75 ~lIq~ylkKSeeNKekNDKERLd 97 (138)
+.|-.+|++|..-.|+|.++=|.
T Consensus 4 ~~Iy~lLe~sq~qqekNek~Ll~ 26 (35)
T 3drq_C 4 ALFLGFLGAAGSKKXKNEQELLE 26 (35)
T ss_pred hHHHHHHHHHHhhHHhhHHHHHH
Confidence 46888999999999999987543
No 16
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=24.63 E-value=70 Score=18.77 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=13.5
Q ss_pred cccchhH-HHHHHHHhhcC
Q 032560 121 QELSESE-KGILEWLKTNK 138 (138)
Q Consensus 121 ~~lsese-k~Il~wL~knk 138 (138)
..||+.| +.|++||...+
T Consensus 53 ~~ls~~ei~~l~~yl~~~~ 71 (71)
T 1c75_A 53 GIAKGAEAEAVAAWLAEKK 71 (71)
T ss_dssp CSSCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 5688887 57899997643
No 17
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=23.63 E-value=48 Score=25.10 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=31.8
Q ss_pred HHHHHHHhhHHhHh--hhhHHHHhHHHhhhhhhhhhhhccccC--CCCccccchhHHH
Q 032560 76 LLQKYLKKSEENKA--KNDKERMDSYYKRNYKDYFDFIEGSLK--GKSEQELSESEKG 129 (138)
Q Consensus 76 lIq~ylkKSeeNKe--kNDKERLd~yYkRnY~dyF~~~eG~~~--~k~~~~lsesek~ 129 (138)
.+++++..=+.++. +.|.+++..-.....-.||+|..=+.. |+.-..+|+.|+.
T Consensus 38 ~~~~vl~~lk~~~~~~~~~~~~~~~~v~~~l~p~~D~~~~a~~vLG~~wr~at~~Qr~ 95 (211)
T 2qgu_A 38 AVDDVLATIKGDPDLRGGNLQKVFQLVDQKIVPRADFKRTTQIAMGRFWSQATPEQQQ 95 (211)
T ss_dssp HHHHHHHHHHTCHHHHTTCHHHHHHHHHHHTGGGBCHHHHHHHHHGGGTTTSCHHHHH
T ss_pred HHHHHHHHHhCCccccccCHHHHHHHHHHHhhhhcCHHHHHHHHHhHhHhhCCHHHHH
Confidence 33444444444443 366777777777777777776542222 4444458888875
No 18
>2z2t_D Fusion inhibitor peptide SC34EK; coiled-coil, viral protein/inhibitor complex; 2.10A {Synthetic}
Probab=23.13 E-value=75 Score=18.26 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhHHhHhhhhHHH
Q 032560 74 TQLLQKYLKKSEENKAKNDKER 95 (138)
Q Consensus 74 s~lIq~ylkKSeeNKekNDKER 95 (138)
.+.|-.+|++|..--++|.++=
T Consensus 13 t~~Iy~lle~sq~qqekNe~~L 34 (36)
T 2z2t_D 13 TKKIEELIKKSQEQQEKNEKEL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHh
Confidence 4688999999999999997763
No 19
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=20.72 E-value=86 Score=24.64 Aligned_cols=23 Identities=17% Similarity=0.292 Sum_probs=18.4
Q ss_pred ccccCCCCccccchhHHHHHHHHhhc
Q 032560 112 EGSLKGKSEQELSESEKGILEWLKTN 137 (138)
Q Consensus 112 eG~~~~k~~~~lsesek~Il~wL~kn 137 (138)
.|...|+. ..|..+.|.+||+++
T Consensus 221 ~g~f~Gl~---v~eA~~~Ii~~L~~~ 243 (261)
T 2wfg_A 221 IGKYKGDK---VEDAKPKVKQDLIDE 243 (261)
T ss_dssp SSTTTTSB---HHHHHHHHHHHHHHT
T ss_pred ccccCCeE---HHHHHHHHHHHHHHC
Confidence 46677776 568999999999876
No 20
>2k3d_A LIN0334 protein; alpha beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Listeria innocua CLIP11262}
Probab=20.60 E-value=44 Score=23.17 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=14.8
Q ss_pred hhHHHHhHHHhhhhhhh
Q 032560 91 NDKERMDSYYKRNYKDY 107 (138)
Q Consensus 91 NDKERLd~yYkRnY~dy 107 (138)
-+|+|++-|++.|++++
T Consensus 5 ~qk~rIe~ylK~n~~~I 21 (87)
T 2k3d_A 5 EQKEKVTLYLKHNIPDF 21 (87)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhhhCCC
Confidence 47899999999999983
Done!