Query 032560
Match_columns 138
No_of_seqs 35 out of 37
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 04:14:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032560.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032560hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o3fa1 a.4.1.20 (A:1-83) Puta 69.7 1.2 8.8E-05 28.3 2.2 16 122-137 15-30 (83)
2 d1b43a1 a.60.7.1 (A:220-339) F 49.3 1.3 9.5E-05 29.8 -0.6 26 77-102 95-120 (120)
3 d1c75a_ a.3.1.1 (A:) Cytochrom 34.8 17 0.0012 21.3 3.1 24 115-138 47-71 (71)
4 d1hroa_ a.3.1.1 (A:) Cytochrom 25.8 44 0.0032 21.0 4.2 45 89-138 60-105 (105)
5 d1gu2a_ a.3.1.1 (A:) Cytochrom 24.6 35 0.0026 23.9 3.7 36 90-136 82-118 (124)
6 d1x6va3 c.37.1.4 (A:34-228) Ad 21.7 19 0.0014 22.6 1.6 34 105-138 157-191 (195)
7 d1a0pa1 a.60.9.1 (A:3-100) Rec 21.7 79 0.0058 18.8 4.8 55 75-135 4-58 (98)
8 d1ynra1 a.3.1.1 (A:1-80) Cytoc 20.2 32 0.0023 19.9 2.4 19 120-138 61-80 (80)
9 d351ca_ a.3.1.1 (A:) Cytochrom 19.0 31 0.0023 19.9 2.1 21 118-138 61-82 (82)
10 d1i4da_ a.238.1.2 (A:) Arfapti 18.9 78 0.0057 19.9 4.3 54 75-130 94-147 (200)
No 1
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=69.65 E-value=1.2 Score=28.30 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=14.7
Q ss_pred ccchhHHHHHHHHhhc
Q 032560 122 ELSESEKGILEWLKTN 137 (138)
Q Consensus 122 ~lsesek~Il~wL~kn 137 (138)
.||++|+.|++|+-.|
T Consensus 15 ~Ls~~e~~ia~yil~~ 30 (83)
T d2o3fa1 15 KLPPSERKLADYILAH 30 (83)
T ss_dssp GSCHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHcC
Confidence 5999999999999876
No 2
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=49.26 E-value=1.3 Score=29.84 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=17.6
Q ss_pred HHHHHHhhHHhHhhhhHHHHhHHHhh
Q 032560 77 LQKYLKKSEENKAKNDKERMDSYYKR 102 (138)
Q Consensus 77 Iq~ylkKSeeNKekNDKERLd~yYkR 102 (138)
|+..++|-+...++..+-||++||||
T Consensus 95 v~~~l~kl~k~~~~~~Q~~L~~fFk~ 120 (120)
T d1b43a1 95 VKNGLERLKKAIKSGKQSTLESWFKR 120 (120)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCSSCCC
T ss_pred HHHHHHHHHHHHccCCCCCHHHHhCC
Confidence 45555555555566677888888876
No 3
>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]}
Probab=34.78 E-value=17 Score=21.31 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=17.4
Q ss_pred cCCCCccccchhH-HHHHHHHhhcC
Q 032560 115 LKGKSEQELSESE-KGILEWLKTNK 138 (138)
Q Consensus 115 ~~~k~~~~lsese-k~Il~wL~knk 138 (138)
...+.+..||+.| +.|++||.+-|
T Consensus 47 ~~~MP~~~Ls~~ei~~i~~Yl~~~K 71 (71)
T d1c75a_ 47 QGGMPGGIAKGAEAEAVAAWLAEKK 71 (71)
T ss_dssp BTTBCSCSSCHHHHHHHHHHHHTCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 3455566799888 57999998754
No 4
>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]}
Probab=25.81 E-value=44 Score=21.00 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=26.6
Q ss_pred hhhhHHHHhHHHhhhhhhhhhhhccccCCCCccccchhHH-HHHHHHhhcC
Q 032560 89 AKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEK-GILEWLKTNK 138 (138)
Q Consensus 89 ekNDKERLd~yYkRnY~dyF~~~eG~~~~k~~~~lsesek-~Il~wL~knk 138 (138)
...+.|.|+.|-+.. . .|+.|+.=. -.+.++|.|+ .|++||+..|
T Consensus 60 ~~~~~~~L~~~l~~P-~---~~~pgt~M~-~~gl~~~~~~~dliaYL~sLK 105 (105)
T d1hroa_ 60 IVWTPDVLFKYIEHP-Q---KIVPGTKMG-YPGQPDPQKRADIIAYLETLK 105 (105)
T ss_dssp CBCCHHHHHHHHHCH-H---HHSTTCCCC-CCCCCCHHHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHHCc-c---ccCCCCCCC-CCCCCCHHHHHHHHHHHHHcC
Confidence 446777888765432 2 345664321 1233567776 5999998764
No 5
>d1gu2a_ a.3.1.1 (A:) Cytochrome c'' {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
Probab=24.56 E-value=35 Score=23.92 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=28.3
Q ss_pred hhhHHHHhHHHhhhhhhhhhhhccccCCCCccccchhHHH-HHHHHhh
Q 032560 90 KNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKG-ILEWLKT 136 (138)
Q Consensus 90 kNDKERLd~yYkRnY~dyF~~~eG~~~~k~~~~lsesek~-Il~wL~k 136 (138)
--|-...+-+|+||..|.|+ + +-|..||+ ++.||..
T Consensus 82 ftD~akvEKWf~RNC~dv~g--------R---eCTa~EKgD~l~~L~s 118 (124)
T d1gu2a_ 82 FTDIDKVEDEFTKHCNDILG--------A---DCSPSEKANFIAYLLT 118 (124)
T ss_dssp TTCHHHHHHHHHHHHHHHHS--------S---CCCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHhhcHhhhc--------c---cCCHHHhhhHHHHHHh
Confidence 35777788899999999886 2 47888887 7888864
No 6
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.69 E-value=19 Score=22.59 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=18.8
Q ss_pred hhhhhhhccccCCCCcc-ccchhHHHHHHHHhhcC
Q 032560 105 KDYFDFIEGSLKGKSEQ-ELSESEKGILEWLKTNK 138 (138)
Q Consensus 105 ~dyF~~~eG~~~~k~~~-~lsesek~Il~wL~knk 138 (138)
.+|..+.+.++.-.+.. ...|.-+.|++||++++
T Consensus 157 ~~~e~~~~~dl~IdT~~~s~ee~~~~Il~~l~~~~ 191 (195)
T d1x6va3 157 SEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERD 191 (195)
T ss_dssp -CCCCCSSCSEEECTTTSCHHHHHHHHHHHHHHTT
T ss_pred cccCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCc
Confidence 34444445555433322 23344589999999874
No 7
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=21.67 E-value=79 Score=18.82 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=31.2
Q ss_pred HHHHHHHHhhHHhHhhhhHHHHhHHHhhhhhhhhhhhccccCCCCccccchhHHHHHHHHh
Q 032560 75 QLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKGILEWLK 135 (138)
Q Consensus 75 ~lIq~ylkKSeeNKekNDKERLd~yYkRnY~dyF~~~eG~~~~k~~~~lsesek~Il~wL~ 135 (138)
+.|++++.-=... ++--+.=-.-|++....|+.|.+.. +.+..+++..+ |.+||.
T Consensus 4 ~~ie~fl~~l~~e--rg~S~~Ti~aY~~dl~~f~~~l~~~--~~~~~~i~~~~--i~~yl~ 58 (98)
T d1a0pa1 4 ARIEQFLDALWLE--KNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDD--LQALLA 58 (98)
T ss_dssp HHHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHHHHHHT--SCCTTTCCHHH--HHHHHH
T ss_pred HHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHhc--ccccccccHHH--HHHHHH
Confidence 3466666543221 1212222346899999999998654 34555565544 667764
No 8
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}
Probab=20.19 E-value=32 Score=19.94 Aligned_cols=19 Identities=26% Similarity=0.634 Sum_probs=14.3
Q ss_pred ccccchhH-HHHHHHHhhcC
Q 032560 120 EQELSESE-KGILEWLKTNK 138 (138)
Q Consensus 120 ~~~lsese-k~Il~wL~knk 138 (138)
...|||.| +.|++||.+-|
T Consensus 61 ~~~lsd~ei~~l~~yi~sLk 80 (80)
T d1ynra1 61 PQNVTDAEAKQLAQWILSIK 80 (80)
T ss_dssp CCSCCHHHHHHHHHHHHTCC
T ss_pred cccCCHHHHHHHHHHHHHcC
Confidence 34689888 57899998754
No 9
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.03 E-value=31 Score=19.93 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=15.4
Q ss_pred CCccccchhH-HHHHHHHhhcC
Q 032560 118 KSEQELSESE-KGILEWLKTNK 138 (138)
Q Consensus 118 k~~~~lsese-k~Il~wL~knk 138 (138)
+..-.|||.| +.|++||.+-|
T Consensus 61 MP~~~lsd~ei~~la~Yi~SlK 82 (82)
T d351ca_ 61 MPPNAVSDDEAQTLAKWVLSQK 82 (82)
T ss_dssp BCCCSCCHHHHHHHHHHHHTTC
T ss_pred ccccCCCHHHHHHHHHHHHhcC
Confidence 4444599988 57999998754
No 10
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.87 E-value=78 Score=19.92 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHHHHHhhHHhHhhhhHHHHhHHHhhhhhhhhhhhccccCCCCccccchhHHHH
Q 032560 75 QLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKGI 130 (138)
Q Consensus 75 ~lIq~ylkKSeeNKekNDKERLd~yYkRnY~dyF~~~eG~~~~k~~~~lsesek~I 130 (138)
.++.+.++--++-+.+.++.|+| |.+....+=..-+.....+++.+|.+.|...
T Consensus 94 ~~~~~~~~~~~~~~kk~~~~~~d--yd~~~~k~~~~~~~~~~~~~~~kl~~ae~~~ 147 (200)
T d1i4da_ 94 TLVTKTMEDTLMTVKQYEAARLE--YDAYRTDLEELSLGPRDAGTRGRLESAQATF 147 (200)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHC------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHhhcccccchhhhHHHHHHHH
Confidence 36667777777788888888888 5555555544444444445555676666543
Done!