BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032561
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
TT GLKY D+ EG G A+ G TV VH+
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHY 129
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
TT GLKY D+ EG G A+ G TV VH+
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHY 129
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
TT GLKY D+ EG G A+ G TV VH+
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHY 129
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
TT GLKY D+ EG G A+ G TV VH+
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHY 129
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
TT GLKY D+ EG G A+ G TV VH+
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHY 129
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
TT GLKY D+ EG G A+ G TV VH+
Sbjct: 5 TTESGLKYEDLTEGSGAEARAGQTVSVHY 33
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
TT GLKY D+ EG G A+ G TV VH+
Sbjct: 25 TTESGLKYEDLTEGSGAEARAGQTVSVHY 53
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
TT GLKY D+ EG G A+ G TV VH+
Sbjct: 5 TTESGLKYEDLTEGSGAEARAGQTVSVHY 33
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
TT GLKY D+ EG G A+ G TV VH+
Sbjct: 9 TTESGLKYEDLTEGSGAEARAGQTVSVHY 37
>pdb|1OSG|A Chain A, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|B Chain B, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|C Chain C, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|D Chain D, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|E Chain E, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|F Chain F, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|3V56|A Chain A, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|B Chain B, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|C Chain C, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|D Chain D, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|E Chain E, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|F Chain F, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide
Length = 208
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 59 ARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRES 118
++ RNK+A+ + T D L+ I + + P QKGS V + F+ +A+ +E+
Sbjct: 49 SQNSRNKRAVQGPEETVTQDCLQL--IADSETPTIQKGSYTFVPWLLSFKRGSALEEKEN 106
Query: 119 KLLAGNRSIAEVYLGFVYIY 138
K+L + E G+ +IY
Sbjct: 107 KIL-----VKET--GYFFIY 119
>pdb|4ART|A Chain A, Structure Of The Orf273 Protein From The Acidianus
Two-Tailed Virus
pdb|4ART|B Chain B, Structure Of The Orf273 Protein From The Acidianus
Two-Tailed Virus
Length = 279
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 55 KCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEG------KGPVAQKGSTVQVHFDCIFR 108
K +E RE ++ IP E+ T+D K DIVE + +K T++ + I R
Sbjct: 4 KITEEREFQSISEIPEEEIDATNDEEKLADIVENEIEKEIRKSKTRKCKTIENFYYYILR 63
Query: 109 G--ITAVSSRESKLLAGNRSIAEVY 131
I S + ++ G RS ++Y
Sbjct: 64 DGKIYPASDYDIEVEKGKRSANDIY 88
>pdb|4ATS|A Chain A, Structure Of The Orf273 Protein From The Acidianus Two-
Tailed Virus
Length = 293
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 55 KCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEG------KGPVAQKGSTVQVHFDCIFR 108
K +E RE ++ IP E+ T+D K DIVE + +K T++ + I R
Sbjct: 24 KITEEREFQSISEIPEEEIDATNDEEKLADIVENEIEKEIRKSKTRKCKTIENFYYYILR 83
Query: 109 G--ITAVSSRESKLLAGNRSIAEVY 131
I S + ++ G RS ++Y
Sbjct: 84 DGKIYPASDYDIEVEKGKRSANDIY 108
>pdb|1YB0|A Chain A, Structure Of Plyl
pdb|1YB0|B Chain B, Structure Of Plyl
pdb|1YB0|C Chain C, Structure Of Plyl
Length = 159
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 15/64 (23%)
Query: 20 HTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDG 79
H + KQA+ IP R A A C + N+++I +E ++ S G
Sbjct: 54 HVAVDDKQAIQGIPWERNAWA---------------CGDGNGPGNRESISVEICYSKSGG 98
Query: 80 LKYY 83
+YY
Sbjct: 99 DRYY 102
>pdb|3OI8|A Chain A, The Crystal Structure Of Functionally Unknown Conserved
Protein Domain From Neisseria Meningitidis Mc58
pdb|3OI8|B Chain B, The Crystal Structure Of Functionally Unknown Conserved
Protein Domain From Neisseria Meningitidis Mc58
Length = 156
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 56 CSEARERRNKKAIPLEDYHTTSDGLKYYDIVE 87
E RE+RN AI +++Y TS + + DI+E
Sbjct: 125 LKEFREQRNHXAIVIDEYGGTSGLVTFEDIIE 156
>pdb|2DU7|A Chain A, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|B Chain B, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|C Chain C, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|D Chain D, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
Length = 549
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 18 PQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTS 77
P+ TT+ + + S ++ I LP + S+ +C +R ++ L YH+ S
Sbjct: 188 PESTTLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSH--LMSYHSAS 245
Query: 78 DGLKYYDIVEGKGPVAQKGSTVQVHF 103
+ D+ G V +G Q F
Sbjct: 246 CVVVGEDVSVDDGKVVAEGLLAQFGF 271
>pdb|2L47|A Chain A, Solution Structure Of The Plyg Catalytic Domain
Length = 165
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 20 HTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDG 79
H + K+A+ IP+ R A A C + N+++I +E ++ S G
Sbjct: 54 HIAVDDKKAIQGIPLERNAWA---------------CGDGNGSGNRQSISVEICYSKSGG 98
Query: 80 LKYY 83
+YY
Sbjct: 99 DRYY 102
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 72 DYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
++ + GL + D V G GP A KG ++ H+
Sbjct: 6 EFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHY 37
>pdb|2FCO|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Prfa-Holliday Junction Resolvase
pdb|2FCO|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Prfa-Holliday Junction Resolvase
Length = 200
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 58 EARERRNKKAIPLEDYH 74
EA+E +NK A PL+++H
Sbjct: 99 EAKETKNKTAFPLKNFH 115
>pdb|1Y1O|A Chain A, X-ray Crystal Structure Of Penicillin-binding Protein-
Related Factor A From Bacillus Stearothermophilus
pdb|1Y1O|B Chain B, X-ray Crystal Structure Of Penicillin-binding Protein-
Related Factor A From Bacillus Stearothermophilus
pdb|1Y1O|C Chain C, X-ray Crystal Structure Of Penicillin-binding Protein-
Related Factor A From Bacillus Stearothermophilus
pdb|1Y1O|D Chain D, X-ray Crystal Structure Of Penicillin-binding Protein-
Related Factor A From Bacillus Stearothermophilus
Length = 203
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 58 EARERRNKKAIPLEDYH 74
EA+E +NK A PL+++H
Sbjct: 102 EAKETKNKTAFPLKNFH 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,670,812
Number of Sequences: 62578
Number of extensions: 125236
Number of successful extensions: 288
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 20
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)