BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032561
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LM71|FKB18_ARATH Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic
OS=Arabidopsis thaliana GN=FKBP18 PE=1 SV=2
Length = 232
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 102/143 (71%), Gaps = 12/143 (8%)
Query: 1 MASIRSFGKWTVD-HQICPQHTTI-QAKQA-------VVSIPISRRAAAI-LISSLPFS- 49
MASI S +W + H P+ T+I +A Q+ S+PISRR A+I L+SS+P +
Sbjct: 1 MASISSLHRWASNQHSRLPRITSISEADQSRPINQVVAFSVPISRRDASIILLSSIPLTS 60
Query: 50 -VISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFR 108
+ P SEARERR++K IPLE+Y T +GLK+YDI EGKGPVA +GST QVHFDC +R
Sbjct: 61 FFVLTPSSSEARERRSRKVIPLEEYSTGPEGLKFYDIEEGKGPVATEGSTAQVHFDCRYR 120
Query: 109 GITAVSSRESKLLAGNRSIAEVY 131
ITA+S+RESKLLAGNRSIA+ Y
Sbjct: 121 SITAISTRESKLLAGNRSIAQPY 143
>sp|Q9SR70|FK164_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic
OS=Arabidopsis thaliana GN=FKBP16-4 PE=1 SV=1
Length = 230
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 57 SEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSR 116
S +R +P D+ T +GLKYYDI G G A KGS V VH+ ++GIT ++SR
Sbjct: 84 STSRRALRASKLPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAVHYVAKWKGITFMTSR 143
Query: 117 ESKLLAGN 124
+ + G
Sbjct: 144 QGLGVGGG 151
>sp|Q9LYR5|FKB19_ARATH Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic
OS=Arabidopsis thaliana GN=FKBP19 PE=1 SV=1
Length = 256
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 65 KKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFD 104
K + DY T GL+Y D+ G GP+A+KG V V +D
Sbjct: 104 KTKMKYPDYTETQSGLQYKDLRVGTGPIAKKGDKVVVDWD 143
>sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1
Length = 1105
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 73 YHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF 107
+H +S+GLK+ D + +A+K + + + DC F
Sbjct: 350 FHGSSNGLKWADSGQNTAEMAKKSTIIHIDLDCFF 384
>sp|P28725|FKBP_STRAQ FK506-binding protein OS=Streptomyces anulatus GN=fkbP PE=1 SV=1
Length = 124
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 80 LKYYDIVEGKGPVAQKGSTVQVHF 103
L DI EG GPVAQ G TV VH+
Sbjct: 19 LAIKDIWEGDGPVAQAGQTVSVHY 42
>sp|Q9Y275|TN13B_HUMAN Tumor necrosis factor ligand superfamily member 13B OS=Homo sapiens
GN=TNFSF13B PE=1 SV=1
Length = 285
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 59 ARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRES 118
++ RNK+A+ + T D L+ I + + P QKGS V + F+ +A+ +E+
Sbjct: 126 SQNSRNKRAVQGPEETVTQDCLQL--IADSETPTIQKGSYTFVPWLLSFKRGSALEEKEN 183
Query: 119 KLLAGNRSIAEVYLGFVYIY 138
K+L + E G+ +IY
Sbjct: 184 KIL-----VKET--GYFFIY 196
>sp|Q96L08|SUSD3_HUMAN Sushi domain-containing protein 3 OS=Homo sapiens GN=SUSD3 PE=2
SV=1
Length = 255
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 6 SFGKWTVDHQIC---PQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARER 62
S +W+ +C P H T K AV++ +S A IL+ S+ F L KC + +R
Sbjct: 80 SIAEWSSGSPVCKLVPPHETFGFKVAVIASIVS--CAIILLMSMAFLTCCLLKCVKKSKR 137
Query: 63 R--NKKA-----IPLEDYHTTSD---GLKYYD 84
R N+ A + ED T GLK+++
Sbjct: 138 RRSNRSAQLWSQLKDEDLETVQAAYLGLKHFN 169
>sp|Q728G0|HTPG_DESVH Chaperone protein HtpG OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=htpG PE=3
SV=1
Length = 637
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 61 ERRNKKAIPLEDYHT-TSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
E ++ I E HT TSDGL + + E G + Q+G+ ++ H
Sbjct: 143 EVTSRSYIEGEAAHTWTSDGLGEFTVEEATGDIPQRGTVIKAHL 186
>sp|Q9D176|SUSD3_MOUSE Sushi domain-containing protein 3 OS=Mus musculus GN=Susd3 PE=2
SV=1
Length = 269
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 10 WTVDHQIC---PQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERR 63
W+ +C P H T K AV++ +S A IL+ S+ F L KC + ERR
Sbjct: 84 WSSGSPVCKAVPPHETFGFKVAVIASIVS--CAIILLMSMAFLTCCLLKCVQKNERR 138
>sp|Q5QX65|PYRD_IDILO Dihydroorotate dehydrogenase (quinone) OS=Idiomarina loihiensis
(strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=pyrD PE=3
SV=1
Length = 334
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 109 GITAVSSRESKLLAGNRSIAEVYLGFVY 136
GI +V S E+KL AG S+ +VY GF+Y
Sbjct: 295 GIDSVESAEAKLKAG-ASLVQVYTGFIY 321
>sp|Q944B0|FK161_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic
OS=Arabidopsis thaliana GN=FKBP16-1 PE=2 SV=1
Length = 207
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 79 GLKYYDIVEGKGPVAQKGSTVQVHFDC 105
G++Y +I+EG+G A +G V++++ C
Sbjct: 87 GVRYQEIIEGEGREAHEGDLVELNYVC 113
>sp|Q9YDY0|RS8E_AERPE 30S ribosomal protein S8e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps8e
PE=3 SV=1
Length = 136
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 18 PQHTTIQAKQAVVSIPISRRAAAILISS--LPFSVISLPKCSEARERR 63
P +TT+ A + P+ R + I + + F+V+S PK EAR+ R
Sbjct: 33 PTYTTLSAAEEEERKPVRARGGSYKIKAKKVAFAVVSNPKTGEARKAR 80
>sp|O22870|FK163_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic
OS=Arabidopsis thaliana GN=FKBP16-3 PE=1 SV=2
Length = 223
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 54 PKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHF 103
P+ EA + + +P+ TT GL+Y DI G+GP G V ++
Sbjct: 85 PRLCEAECEKELENVPM---VTTESGLQYKDIKVGRGPSPPVGFQVAANY 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,402,015
Number of Sequences: 539616
Number of extensions: 1635547
Number of successful extensions: 3476
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3468
Number of HSP's gapped (non-prelim): 15
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)