Query 032561
Match_columns 138
No_of_seqs 133 out of 1138
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 99.6 1.4E-15 3.1E-20 122.3 7.8 63 64-135 87-150 (205)
2 KOG0544 FKBP-type peptidyl-pro 99.4 4.2E-13 9.1E-18 97.6 6.7 48 79-135 2-51 (108)
3 PRK11570 peptidyl-prolyl cis-t 99.4 2.1E-12 4.6E-17 103.4 8.6 59 68-135 92-151 (206)
4 PRK10902 FKBP-type peptidyl-pr 99.2 5.5E-11 1.2E-15 98.8 7.8 59 68-135 136-195 (269)
5 KOG0552 FKBP-type peptidyl-pro 99.1 7.6E-11 1.6E-15 96.3 6.1 45 74-118 116-162 (226)
6 TIGR03516 ppisom_GldI peptidyl 99.1 6.1E-10 1.3E-14 87.4 8.3 57 69-135 60-119 (177)
7 KOG0549 FKBP-type peptidyl-pro 98.9 3.4E-09 7.3E-14 84.5 5.5 49 76-135 70-119 (188)
8 PF00254 FKBP_C: FKBP-type pep 98.2 3.8E-06 8.3E-11 57.7 4.8 35 92-135 4-39 (94)
9 KOG0543 FKBP-type peptidyl-pro 97.8 1.4E-05 3E-10 70.1 3.8 32 86-117 1-34 (397)
10 PRK15095 FKBP-type peptidyl-pr 97.1 0.00077 1.7E-08 51.9 4.1 27 92-118 4-31 (156)
11 KOG0543 FKBP-type peptidyl-pro 96.0 0.019 4.2E-07 50.7 6.5 41 77-118 83-126 (397)
12 COG1047 SlpA FKBP-type peptidy 94.8 0.039 8.5E-07 43.9 3.8 25 93-117 3-28 (174)
13 KOG0545 Aryl-hydrocarbon recep 94.7 0.027 5.9E-07 48.0 3.0 50 77-135 9-63 (329)
14 PRK10737 FKBP-type peptidyl-pr 93.6 0.099 2.2E-06 42.1 4.0 26 93-118 3-29 (196)
15 TIGR00115 tig trigger factor. 89.4 0.69 1.5E-05 39.8 4.9 25 92-116 146-170 (408)
16 PRK01490 tig trigger factor; P 88.4 0.88 1.9E-05 39.5 5.0 25 92-116 157-181 (435)
17 PF01346 FKBP_N: Domain amino 62.5 5.7 0.00012 28.4 1.9 16 69-84 109-124 (124)
18 COG0544 Tig FKBP-type peptidyl 57.8 17 0.00036 32.6 4.4 23 93-115 158-180 (441)
19 PLN00067 PsbP domain-containin 48.0 56 0.0012 27.7 5.7 28 34-61 42-70 (263)
20 PLN00044 multi-copper oxidase- 45.0 18 0.00038 33.7 2.5 32 76-107 40-78 (596)
21 PHA02122 hypothetical protein 42.9 44 0.00096 22.4 3.5 20 94-113 39-58 (65)
22 PF07076 DUF1344: Protein of u 38.6 60 0.0013 21.8 3.7 43 69-112 14-56 (61)
23 PF10518 TAT_signal: TAT (twin 35.4 28 0.00062 19.1 1.5 17 33-49 1-17 (26)
24 PF08255 Leader_Trp: Trp-opero 34.1 13 0.00029 18.2 -0.0 11 1-11 1-11 (14)
25 PF15257 DUF4590: Domain of un 33.8 51 0.0011 24.8 3.0 28 101-137 27-57 (116)
26 TIGR03096 nitroso_cyanin nitro 31.5 65 0.0014 24.6 3.4 30 75-104 40-76 (135)
27 PF09083 DUF1923: Domain of un 27.7 46 0.001 22.2 1.7 13 125-137 51-63 (64)
28 PRK10877 protein disulfide iso 26.6 1.2E+02 0.0025 24.5 4.2 40 67-115 34-76 (232)
29 PLN00042 photosystem II oxygen 25.8 71 0.0015 27.1 2.9 16 32-47 48-64 (260)
30 PF11245 DUF2544: Protein of u 24.6 39 0.00086 28.1 1.2 28 104-136 153-181 (230)
31 TIGR02811 formate_TAT formate 23.7 59 0.0013 21.7 1.7 14 31-44 6-19 (66)
32 TIGR01480 copper_res_A copper- 21.8 1.1E+02 0.0024 28.4 3.6 15 93-107 80-94 (587)
33 cd01089 PA2G4-like Related to 21.6 1.7E+02 0.0037 22.9 4.3 27 91-117 81-107 (228)
34 cd01090 Creatinase Creatine am 21.5 1.5E+02 0.0033 23.4 4.0 27 91-117 75-101 (228)
35 PLN00054 photosystem I reactio 20.2 84 0.0018 24.2 2.1 19 31-49 25-43 (139)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.4e-15 Score=122.28 Aligned_cols=63 Identities=25% Similarity=0.287 Sum_probs=57.2
Q ss_pred ccCCCCCCCceeCCCCcEEEEeecCCCCCCCCCCEEEEEEEEEe-CCeEeeeccccccccCCccccccEEEEE
Q 032561 64 NKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEVYLGFV 135 (138)
Q Consensus 64 ~~~~~p~~~~~t~psGL~y~dlk~G~G~~p~~Gd~V~VhY~G~l-dG~~FDSS~~r~~~~G~r~i~eP~~F~v 135 (138)
..+.....+++++++||+|.+++.|+|+.|++|++|.|||+|+| ||++||||++|+ +|++|.+
T Consensus 87 ~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg---------~p~~f~l 150 (205)
T COG0545 87 LEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRG---------QPAEFPL 150 (205)
T ss_pred HhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccC---------CCceeec
Confidence 33445567889999999999999999999999999999999999 999999999996 8999976
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.2e-13 Score=97.62 Aligned_cols=48 Identities=29% Similarity=0.393 Sum_probs=45.3
Q ss_pred CcEEEEeecCCCCC-CCCCCEEEEEEEEEe-CCeEeeeccccccccCCccccccEEEEE
Q 032561 79 GLKYYDIVEGKGPV-AQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEVYLGFV 135 (138)
Q Consensus 79 GL~y~dlk~G~G~~-p~~Gd~V~VhY~G~l-dG~~FDSS~~r~~~~G~r~i~eP~~F~v 135 (138)
|+...+|.+|+|.. |++||+|+|||+|.| ||++||||++|+ .||.|.|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~---------kPfkf~I 51 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRG---------KPFKFKI 51 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccC---------CCeeEEe
Confidence 78999999999965 999999999999999 999999999996 7999987
No 3
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.37 E-value=2.1e-12 Score=103.38 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=54.5
Q ss_pred CCCCCceeCCCCcEEEEeecCCCCCCCCCCEEEEEEEEEe-CCeEeeeccccccccCCccccccEEEEE
Q 032561 68 IPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEVYLGFV 135 (138)
Q Consensus 68 ~p~~~~~t~psGL~y~dlk~G~G~~p~~Gd~V~VhY~G~l-dG~~FDSS~~r~~~~G~r~i~eP~~F~v 135 (138)
...++++++++||+|+++++|+|..|+.||.|.|||+|++ ||++||||+++. +|++|.+
T Consensus 92 ~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g---------~P~~f~l 151 (206)
T PRK11570 92 AKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARG---------EPAEFPV 151 (206)
T ss_pred hhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCC---------CCeEEEe
Confidence 3467899999999999999999999999999999999999 999999999874 7999986
No 4
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.19 E-value=5.5e-11 Score=98.84 Aligned_cols=59 Identities=25% Similarity=0.207 Sum_probs=53.6
Q ss_pred CCCCCceeCCCCcEEEEeecCCCCCCCCCCEEEEEEEEEe-CCeEeeeccccccccCCccccccEEEEE
Q 032561 68 IPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEVYLGFV 135 (138)
Q Consensus 68 ~p~~~~~t~psGL~y~dlk~G~G~~p~~Gd~V~VhY~G~l-dG~~FDSS~~r~~~~G~r~i~eP~~F~v 135 (138)
...++++++++||+|.++++|+|..|+.||.|.|||.|++ ||++||||+++. +|++|.+
T Consensus 136 ~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g---------~p~~f~l 195 (269)
T PRK10902 136 AKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRG---------EPLSFRL 195 (269)
T ss_pred ccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCC---------CceEEec
Confidence 4557899999999999999999999999999999999999 999999999874 6888865
No 5
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.6e-11 Score=96.30 Aligned_cols=45 Identities=33% Similarity=0.473 Sum_probs=43.0
Q ss_pred eeCCCCcEEEEeecCCCCCCCCCCEEEEEEEEEe--CCeEeeecccc
Q 032561 74 HTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF--RGITAVSSRES 118 (138)
Q Consensus 74 ~t~psGL~y~dlk~G~G~~p~~Gd~V~VhY~G~l--dG~~FDSS~~r 118 (138)
.++++||+|+|++.|+|+.|++|++|.|||+|+| +|++||++...
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~ 162 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGG 162 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCC
Confidence 5789999999999999999999999999999999 99999999876
No 6
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.07 E-value=6.1e-10 Score=87.37 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=50.6
Q ss_pred CCCCceeCCCCcEEEEeec--CCCCCCCCCCEEEEEEEEEe-CCeEeeeccccccccCCccccccEEEEE
Q 032561 69 PLEDYHTTSDGLKYYDIVE--GKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEVYLGFV 135 (138)
Q Consensus 69 p~~~~~t~psGL~y~dlk~--G~G~~p~~Gd~V~VhY~G~l-dG~~FDSS~~r~~~~G~r~i~eP~~F~v 135 (138)
+...+.++++|++|.++++ |+|..|++||.|.+||+|++ ||++|||+++. +|+.|.+
T Consensus 60 ~~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~----------~P~~f~v 119 (177)
T TIGR03516 60 SIVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEEL----------GPQTYKV 119 (177)
T ss_pred CCCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCC----------CCEEEEe
Confidence 4577889999999998876 77788999999999999999 99999999875 5888876
No 7
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.4e-09 Score=84.50 Aligned_cols=49 Identities=22% Similarity=0.155 Sum_probs=41.4
Q ss_pred CCCCcEEEEeecCCCCCCCCCCEEEEEEEEEe-CCeEeeeccccccccCCccccccEEEEE
Q 032561 76 TSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEVYLGFV 135 (138)
Q Consensus 76 ~psGL~y~dlk~G~G~~p~~Gd~V~VhY~G~l-dG~~FDSS~~r~~~~G~r~i~eP~~F~v 135 (138)
++-|+.++ .+.+..+.++||.+.+||+|.+ ||++||||+.|+ +||+|++
T Consensus 70 l~I~v~~~--p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg---------~P~~f~L 119 (188)
T KOG0549|consen 70 LQIGVLKK--PEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRG---------APFTFTL 119 (188)
T ss_pred eeEEEEEC--CccccccccCCCEEEEEEEEEecCCCEEeeeccCC---------CCEEEEe
Confidence 44455555 3348888999999999999999 999999999996 7999987
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=98.15 E-value=3.8e-06 Score=57.66 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEEEEEe-CCeEeeeccccccccCCccccccEEEEE
Q 032561 92 VAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEVYLGFV 135 (138)
Q Consensus 92 ~p~~Gd~V~VhY~G~l-dG~~FDSS~~r~~~~G~r~i~eP~~F~v 135 (138)
.|+.||+|.+||.+++ ||++||++++.. +|++|.+
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~---------~~~~~~~ 39 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEG---------EPFEFRL 39 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTT---------SEEEEET
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecC---------cceeeee
Confidence 4999999999999999 999999997754 6999874
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.4e-05 Score=70.14 Aligned_cols=32 Identities=34% Similarity=0.536 Sum_probs=29.9
Q ss_pred ecCCCCC-CCCCCEEEEEEEEEe-CCeEeeeccc
Q 032561 86 VEGKGPV-AQKGSTVQVHFDCIF-RGITAVSSRE 117 (138)
Q Consensus 86 k~G~G~~-p~~Gd~V~VhY~G~l-dG~~FDSS~~ 117 (138)
++|+|.+ |..||+|.|||+|+| ||+.||||++
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d 34 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD 34 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC
Confidence 4788965 999999999999999 9999999998
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=97.05 E-value=0.00077 Score=51.88 Aligned_cols=27 Identities=41% Similarity=0.487 Sum_probs=24.7
Q ss_pred CCCCCCEEEEEEEEEe-CCeEeeecccc
Q 032561 92 VAQKGSTVQVHFDCIF-RGITAVSSRES 118 (138)
Q Consensus 92 ~p~~Gd~V~VhY~G~l-dG~~FDSS~~r 118 (138)
.+++|+.|.+||++++ ||++||||+++
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~ 31 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNN 31 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCC
Confidence 4789999999999999 99999999863
No 11
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.019 Score=50.71 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=36.0
Q ss_pred CCCcEEEEeecCCC--CCCCCCCEEEEEEEEEe-CCeEeeecccc
Q 032561 77 SDGLKYYDIVEGKG--PVAQKGSTVQVHFDCIF-RGITAVSSRES 118 (138)
Q Consensus 77 psGL~y~dlk~G~G--~~p~~Gd~V~VhY~G~l-dG~~FDSS~~r 118 (138)
+.||...+|++|.| ..|.+|..|.|||.|++ |+ +||++.-+
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~ 126 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELR 126 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccc
Confidence 78999999999999 56999999999999999 55 99977543
No 12
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.039 Score=43.85 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=23.5
Q ss_pred CCCCCEEEEEEEEEe-CCeEeeeccc
Q 032561 93 AQKGSTVQVHFDCIF-RGITAVSSRE 117 (138)
Q Consensus 93 p~~Gd~V~VhY~G~l-dG~~FDSS~~ 117 (138)
..+|+.|.+||++++ ||++||||.+
T Consensus 3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e 28 (174)
T COG1047 3 IEKGDVVSLHYTLKVEDGEVVDTTDE 28 (174)
T ss_pred ccCCCEEEEEEEEEecCCcEEEcccc
Confidence 678999999999999 9999999977
No 13
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.027 Score=48.02 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=43.0
Q ss_pred CCCcEEEEeecCCCCC--CCCCCEEEEEEEEEe---CCeEeeeccccccccCCccccccEEEEE
Q 032561 77 SDGLKYYDIVEGKGPV--AQKGSTVQVHFDCIF---RGITAVSSRESKLLAGNRSIAEVYLGFV 135 (138)
Q Consensus 77 psGL~y~dlk~G~G~~--p~~Gd~V~VhY~G~l---dG~~FDSS~~r~~~~G~r~i~eP~~F~v 135 (138)
-.||+..+|..|+|+- -.+|..|..||.-.. .++++|.||+.. .|+++.+
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~g---------kPmeiii 63 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVG---------KPMEIII 63 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcC---------CCeEEee
Confidence 3599999999999975 689999999999987 567999999874 7998765
No 14
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=93.57 E-value=0.099 Score=42.05 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=23.5
Q ss_pred CCCCCEEEEEEEEEe-CCeEeeecccc
Q 032561 93 AQKGSTVQVHFDCIF-RGITAVSSRES 118 (138)
Q Consensus 93 p~~Gd~V~VhY~G~l-dG~~FDSS~~r 118 (138)
+++++.|++||+.++ ||.+||+|+..
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~~ 29 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPVS 29 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCCC
Confidence 578999999999999 99999999753
No 15
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=89.36 E-value=0.69 Score=39.78 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.2
Q ss_pred CCCCCCEEEEEEEEEeCCeEeeecc
Q 032561 92 VAQKGSTVQVHFDCIFRGITAVSSR 116 (138)
Q Consensus 92 ~p~~Gd~V~VhY~G~ldG~~FDSS~ 116 (138)
.++.||.|.++|+|+.||..|+++.
T Consensus 146 ~~~~gD~V~v~~~~~~dg~~~~~~~ 170 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFIDGEAFEGGK 170 (408)
T ss_pred ccCCCCEEEEEEEEEECCEECcCCC
Confidence 4789999999999988999999764
No 16
>PRK01490 tig trigger factor; Provisional
Probab=88.38 E-value=0.88 Score=39.50 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCCCCCEEEEEEEEEeCCeEeeecc
Q 032561 92 VAQKGSTVQVHFDCIFRGITAVSSR 116 (138)
Q Consensus 92 ~p~~Gd~V~VhY~G~ldG~~FDSS~ 116 (138)
.++.||.|.++|+|..||..|+++.
T Consensus 157 ~~~~gD~V~vd~~~~~~g~~~~~~~ 181 (435)
T PRK01490 157 PAENGDRVTIDFVGSIDGEEFEGGK 181 (435)
T ss_pred cCCCCCEEEEEEEEEECCEECcCCC
Confidence 4799999999999999999998653
No 17
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=62.50 E-value=5.7 Score=28.41 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=11.9
Q ss_pred CCCCceeCCCCcEEEE
Q 032561 69 PLEDYHTTSDGLKYYD 84 (138)
Q Consensus 69 p~~~~~t~psGL~y~d 84 (138)
..+++++++|||+|++
T Consensus 109 k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 109 KKEGVKTTESGLQYKV 124 (124)
T ss_dssp TSTTEEE-TTS-EEEE
T ss_pred CCCCCEECCCCCeeeC
Confidence 4579999999999985
No 18
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=57.77 E-value=17 Score=32.58 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.7
Q ss_pred CCCCCEEEEEEEEEeCCeEeeec
Q 032561 93 AQKGSTVQVHFDCIFRGITAVSS 115 (138)
Q Consensus 93 p~~Gd~V~VhY~G~ldG~~FDSS 115 (138)
++.||+|++.|.|+.||..|..-
T Consensus 158 a~~gD~v~IDf~g~iDg~~fegg 180 (441)
T COG0544 158 AENGDRVTIDFEGSVDGEEFEGG 180 (441)
T ss_pred cccCCEEEEEEEEEEcCeeccCc
Confidence 88999999999997799988854
No 19
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=47.96 E-value=56 Score=27.75 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=14.9
Q ss_pred chhHHHHHHhhhhh-hhhccCCCChHHHH
Q 032561 34 ISRRAAAILISSLP-FSVISLPKCSEARE 61 (138)
Q Consensus 34 vsRR~~a~~~~al~-~s~~~~~~~a~Ar~ 61 (138)
++.||..+...+|. +.+..-+++++|||
T Consensus 42 ~~~rr~~~~~~~~~~~~~~~~~~~~~~~~ 70 (263)
T PLN00067 42 VIHRRELLLGLALAPLILIAPEPPAEARE 70 (263)
T ss_pred hhHHHHHHhhhhhhhhhhccCCchhhhhe
Confidence 44454555555554 22333455777776
No 20
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=44.98 E-value=18 Score=33.72 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=20.5
Q ss_pred CCCC--cE-EEEeecCC--CCC--CCCCCEEEEEEEEEe
Q 032561 76 TSDG--LK-YYDIVEGK--GPV--AQKGSTVQVHFDCIF 107 (138)
Q Consensus 76 ~psG--L~-y~dlk~G~--G~~--p~~Gd~V~VhY~G~l 107 (138)
.++| .. .....-|. |+. ++.||+|.|+.+=.+
T Consensus 40 ~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L 78 (596)
T PLN00044 40 APLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNAL 78 (596)
T ss_pred ccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCC
Confidence 5777 32 34444453 554 699999998766555
No 21
>PHA02122 hypothetical protein
Probab=42.88 E-value=44 Score=22.40 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.5
Q ss_pred CCCCEEEEEEEEEeCCeEee
Q 032561 94 QKGSTVQVHFDCIFRGITAV 113 (138)
Q Consensus 94 ~~Gd~V~VhY~G~ldG~~FD 113 (138)
..||.|.|+|.-..+|+.|-
T Consensus 39 ~~gd~v~vn~e~~~ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVVNGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEECCEEEE
Confidence 37999999999988998875
No 22
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=38.58 E-value=60 Score=21.75 Aligned_cols=43 Identities=26% Similarity=0.155 Sum_probs=27.4
Q ss_pred CCCCceeCCCCcEEEEeecCCCCCCCCCCEEEEEEEEEeCCeEe
Q 032561 69 PLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITA 112 (138)
Q Consensus 69 p~~~~~t~psGL~y~dlk~G~G~~p~~Gd~V~VhY~G~ldG~~F 112 (138)
+.....++.+|=-|.--.+=+=...++|..|.|+|+-. +|+.+
T Consensus 14 ~~~~titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~-~gk~v 56 (61)
T PF07076_consen 14 PETMTITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEV-DGKRV 56 (61)
T ss_pred CCceEEEecCCCEEECCCcccccccCCCCEEEEEEEcc-CCcEE
Confidence 33445667788776543333334589999999999742 45444
No 23
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=35.41 E-value=28 Score=19.13 Aligned_cols=17 Identities=18% Similarity=-0.019 Sum_probs=10.2
Q ss_pred CchhHHHHHHhhhhhhh
Q 032561 33 PISRRAAAILISSLPFS 49 (138)
Q Consensus 33 ~vsRR~~a~~~~al~~s 49 (138)
.+|||.+.-..++++++
T Consensus 1 ~~sRR~fLk~~~a~~a~ 17 (26)
T PF10518_consen 1 NLSRRQFLKGGAAAAAA 17 (26)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 36899766555544433
No 24
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=34.09 E-value=13 Score=18.16 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=9.0
Q ss_pred Ccccccccccc
Q 032561 1 MASIRSFGKWT 11 (138)
Q Consensus 1 ~~~~~~~~~~~ 11 (138)
|.++-||++|=
T Consensus 1 m~a~~~L~~WW 11 (14)
T PF08255_consen 1 MKATFSLHGWW 11 (14)
T ss_pred CceEEEEeeEE
Confidence 77888999984
No 25
>PF15257 DUF4590: Domain of unknown function (DUF4590)
Probab=33.78 E-value=51 Score=24.79 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=20.7
Q ss_pred EEEEEEe-CCeEee--eccccccccCCccccccEEEEEEe
Q 032561 101 VHFDCIF-RGITAV--SSRESKLLAGNRSIAEVYLGFVYI 137 (138)
Q Consensus 101 VhY~G~l-dG~~FD--SS~~r~~~~G~r~i~eP~~F~v~~ 137 (138)
+=|.|.| .|..|. |-|.+. -||.+++|+
T Consensus 27 cV~kg~L~~~e~F~fiSrRh~g---------fPFsltf~~ 57 (116)
T PF15257_consen 27 CVFKGKLLEGETFQFISRRHRG---------FPFSLTFFL 57 (116)
T ss_pred EEEecccCCCCeEEEEeecccC---------CCeEEEEEE
Confidence 4488998 777665 555553 799999986
No 26
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=31.49 E-value=65 Score=24.60 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=24.7
Q ss_pred eC-CCCcEEEEeecCCCC------CCCCCCEEEEEEE
Q 032561 75 TT-SDGLKYYDIVEGKGP------VAQKGSTVQVHFD 104 (138)
Q Consensus 75 t~-psGL~y~dlk~G~G~------~p~~Gd~V~VhY~ 104 (138)
++ -.|+.+..++.|++- +++.||+|.++++
T Consensus 40 ~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 40 ELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVE 76 (135)
T ss_pred EEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEE
Confidence 44 579999999999873 2699999999886
No 27
>PF09083 DUF1923: Domain of unknown function (DUF1923); InterPro: IPR015167 This domain is found in maltosyltransferases, adopting a secondary structure that consists of eight antiparallel beta-strands forming an open-sided 'jelly roll' Greek key beta-barrel. Their exact function is, as yet, unknown []. ; PDB: 1GJW_A 1GJU_A.
Probab=27.67 E-value=46 Score=22.20 Aligned_cols=13 Identities=15% Similarity=0.117 Sum_probs=8.6
Q ss_pred ccccccEEEEEEe
Q 032561 125 RSIAEVYLGFVYI 137 (138)
Q Consensus 125 r~i~eP~~F~v~~ 137 (138)
|+|-.||+|.+.+
T Consensus 51 ~vilkp~efalv~ 63 (64)
T PF09083_consen 51 RVILKPFEFALVV 63 (64)
T ss_dssp EEEE-TT-EEEEE
T ss_pred eEEecceeEEEEe
Confidence 5777899999864
No 28
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=26.56 E-value=1.2e+02 Score=24.50 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=24.7
Q ss_pred CCCCCCceeCC-CCcEEEEeecCCCCCCCCCCEEEEEEEEEe--CCeEeeec
Q 032561 67 AIPLEDYHTTS-DGLKYYDIVEGKGPVAQKGSTVQVHFDCIF--RGITAVSS 115 (138)
Q Consensus 67 ~~p~~~~~t~p-sGL~y~dlk~G~G~~p~~Gd~V~VhY~G~l--dG~~FDSS 115 (138)
.++..++..+| .||+ .+.. .|..+.+..+|++ .|..+|..
T Consensus 34 ~~~v~~v~~sp~~Gl~-ev~~--------~~~i~Y~~~dg~y~i~G~l~d~~ 76 (232)
T PRK10877 34 GIQSADIQPSPVAGMK-TVLT--------ESGVLYITDDGKHIIQGPMYDVS 76 (232)
T ss_pred CCceeEEccCCCCCeE-EEEE--------CCeEEEEcCCCCEEEeeeeEecC
Confidence 34555555566 6874 3332 2336778888876 89999843
No 29
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=25.80 E-value=71 Score=27.06 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=8.7
Q ss_pred cCchhHHH-HHHhhhhh
Q 032561 32 IPISRRAA-AILISSLP 47 (138)
Q Consensus 32 ~~vsRR~~-a~~~~al~ 47 (138)
..+|||.. ++++++++
T Consensus 48 ~~~srr~~l~~~~ga~a 64 (260)
T PLN00042 48 SAVSRRAALALLAGAAA 64 (260)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 34899964 33334444
No 30
>PF11245 DUF2544: Protein of unknown function (DUF2544); InterPro: IPR021407 This is a bacterial family of proteins with unknown function.
Probab=24.64 E-value=39 Score=28.13 Aligned_cols=28 Identities=18% Similarity=-0.028 Sum_probs=20.1
Q ss_pred EEEe-CCeEeeeccccccccCCccccccEEEEEE
Q 032561 104 DCIF-RGITAVSSRESKLLAGNRSIAEVYLGFVY 136 (138)
Q Consensus 104 ~G~l-dG~~FDSS~~r~~~~G~r~i~eP~~F~v~ 136 (138)
.|+| ||.+|| +|+ +-+|.+++-..|..+
T Consensus 153 ~GkLCDgS~~D---~RG--aYCRfVsq~iTfs~~ 181 (230)
T PF11245_consen 153 DGKLCDGSKFD---ERG--AYCRFVSQMITFSSS 181 (230)
T ss_pred CCcccCCCccc---cCC--ceeEEEeeeeEEEee
Confidence 5667 777776 332 568899999999865
No 31
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=23.73 E-value=59 Score=21.75 Aligned_cols=14 Identities=21% Similarity=0.041 Sum_probs=9.1
Q ss_pred ccCchhHHHHHHhh
Q 032561 31 SIPISRRAAAILIS 44 (138)
Q Consensus 31 ~~~vsRR~~a~~~~ 44 (138)
+..+|||.+.-+++
T Consensus 6 ~~~~sRR~Flk~lg 19 (66)
T TIGR02811 6 KADPSRRDLLKGLG 19 (66)
T ss_pred cCCccHHHHHHHHH
Confidence 44689998655443
No 32
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=21.76 E-value=1.1e+02 Score=28.44 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=11.8
Q ss_pred CCCCCEEEEEEEEEe
Q 032561 93 AQKGSTVQVHFDCIF 107 (138)
Q Consensus 93 p~~Gd~V~VhY~G~l 107 (138)
++.||+|.|+++=.+
T Consensus 80 ~~~Gd~v~v~v~N~l 94 (587)
T TIGR01480 80 WREGDTVRLRVTNTL 94 (587)
T ss_pred EECCCEEEEEEEcCC
Confidence 689999998776554
No 33
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=21.63 E-value=1.7e+02 Score=22.93 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=22.7
Q ss_pred CCCCCCCEEEEEEEEEeCCeEeeeccc
Q 032561 91 PVAQKGSTVQVHFDCIFRGITAVSSRE 117 (138)
Q Consensus 91 ~~p~~Gd~V~VhY~G~ldG~~FDSS~~ 117 (138)
...++||.|.+.+-+.+||-.-|.+|.
T Consensus 81 ~~l~~Gd~v~iD~g~~~~GY~sD~tRT 107 (228)
T cd01089 81 YTLKDGDVVKIDLGCHIDGYIAVVAHT 107 (228)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEE
Confidence 457999999999988889988887764
No 34
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=21.49 E-value=1.5e+02 Score=23.40 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.6
Q ss_pred CCCCCCCEEEEEEEEEeCCeEeeeccc
Q 032561 91 PVAQKGSTVQVHFDCIFRGITAVSSRE 117 (138)
Q Consensus 91 ~~p~~Gd~V~VhY~G~ldG~~FDSS~~ 117 (138)
..+++||.|.+.+-+.++|..-|.+|.
T Consensus 75 r~l~~GD~v~~d~g~~~~GY~ad~~RT 101 (228)
T cd01090 75 RKVQRGDILSLNCFPMIAGYYTALERT 101 (228)
T ss_pred cccCCCCEEEEEEeEEECCEeeeeEEE
Confidence 457999999999998889988887753
No 35
>PLN00054 photosystem I reaction center subunit N; Provisional
Probab=20.24 E-value=84 Score=24.22 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=10.7
Q ss_pred ccCchhHHHHHHhhhhhhh
Q 032561 31 SIPISRRAAAILISSLPFS 49 (138)
Q Consensus 31 ~~~vsRR~~a~~~~al~~s 49 (138)
..+-.||+..+.+++..++
T Consensus 25 ~~~~grraa~~~Laa~l~~ 43 (139)
T PLN00054 25 DASDGRRAALVGLAATLFS 43 (139)
T ss_pred ccccchHHHHHHHHHHHHH
Confidence 3445688666665554344
Done!