Query 032562
Match_columns 138
No_of_seqs 110 out of 236
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 04:16:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 27.8 75 0.0026 17.5 3.2 22 3-24 2-23 (32)
2 4b4a_A TATC, SEC-independent p 25.2 64 0.0022 25.1 3.7 24 68-91 67-90 (249)
3 3cjs_B 50S ribosomal protein L 18.7 32 0.0011 22.1 0.5 13 37-49 31-43 (72)
4 2a65_A Leutaa, Na(+):neurotran 18.0 3.8E+02 0.013 22.9 7.3 36 71-106 49-86 (519)
5 3eyy_A Putative iron uptake re 17.7 57 0.0019 22.7 1.8 35 79-113 33-68 (145)
6 1n0x_P B2.1 peptide, immunoglo 16.4 19 0.00066 18.6 -0.7 11 29-39 6-16 (26)
7 1k8b_A EIF-2-beta, probable tr 16.1 81 0.0028 18.8 1.9 25 35-61 9-33 (52)
8 1mzb_A Ferric uptake regulatio 16.0 60 0.002 22.2 1.5 35 79-113 34-69 (136)
9 3mwm_A ZUR, putative metal upt 13.9 32 0.0011 23.9 -0.4 35 79-113 29-64 (139)
10 1wib_A 60S ribosomal protein L 13.1 54 0.0019 22.1 0.6 13 37-49 42-54 (92)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=27.77 E-value=75 Score=17.47 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032562 3 DLLGWFLVFIFLISLLGILSYQ 24 (138)
Q Consensus 3 ~~~~wi~a~~~~~~ll~~~vy~ 24 (138)
|.+.+.+.++.+.+.+|+.+.+
T Consensus 2 Ea~vYt~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 2 ETITYVFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhhhh
Confidence 6777888888888888877765
No 2
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=25.25 E-value=64 Score=25.10 Aligned_cols=24 Identities=8% Similarity=0.247 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Q 032562 68 TEHWFMFLLSLPYLYFNVRLYTRR 91 (138)
Q Consensus 68 ~g~w~~~lln~P~l~y~~~~y~~~ 91 (138)
.+-+...++..|...|.+|++.+.
T Consensus 67 vs~~~g~~~a~P~ilyQiw~Fi~P 90 (249)
T 4b4a_A 67 ISLAVGFIIASPVILYQFWRFIEP 90 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344577899999999999998865
No 3
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=18.71 E-value=32 Score=22.13 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=11.4
Q ss_pred cCCHHHHHhhcCc
Q 032562 37 YINPYDSAAQINM 49 (138)
Q Consensus 37 ~iNp~d~~~~lN~ 49 (138)
=+|+.|.|+.+|.
T Consensus 31 Gvni~~f~k~fN~ 43 (72)
T 3cjs_B 31 GANIMEFVKAFNA 43 (72)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3799999999996
No 4
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=17.98 E-value=3.8e+02 Score=22.91 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHH--HHhhcCCccchhhHhhhHHH
Q 032562 71 WFMFLLSLPYLYFNVR--LYTRRQHLVDVTEIYSQLTW 106 (138)
Q Consensus 71 w~~~lln~P~l~y~~~--~y~~~~~l~D~TeIf~~L~~ 106 (138)
-.+++..+|++.-... ||.++.+.-.|.+.|+++.+
T Consensus 49 i~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~ 86 (519)
T 2a65_A 49 IAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWR 86 (519)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcC
Confidence 3677889999988877 76665666689999988864
No 5
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=17.72 E-value=57 Score=22.74 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCC-ccchhhHhhhHHHHHHHHHH
Q 032562 79 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (138)
Q Consensus 79 P~l~y~~~~y~~~~~-l~D~TeIf~~L~~~~k~~~i 113 (138)
|+.+..++.-.++++ -+++++|+|+|+.....+.+
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 667788887776664 58999999999988877643
No 6
>1n0x_P B2.1 peptide, immunoglobulin heavy chain; antibody-peptide complex, peptide dimer, immune system; HET: CXS; 1.80A {Homo sapiens}
Probab=16.45 E-value=19 Score=18.61 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=8.4
Q ss_pred hhhhcccccCC
Q 032562 29 YLTDLEGDYIN 39 (138)
Q Consensus 29 ~l~DLe~D~iN 39 (138)
++||||..++.
T Consensus 6 mfsdlenrcia 16 (26)
T 1n0x_P 6 MFSDLENRCIA 16 (26)
T ss_dssp EEETTTTEEEE
T ss_pred hhhHHHHHHHH
Confidence 57899988764
No 7
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=16.08 E-value=81 Score=18.85 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=19.7
Q ss_pred cccCCHHHHHhhcCcchHHHHHHHHHH
Q 032562 35 GDYINPYDSAAQINMLVFPEFFTQGTL 61 (138)
Q Consensus 35 ~D~iNp~d~~~~lN~lv~pE~~~h~~l 61 (138)
+-+.|=.|.|+++|+ .||+..+-+.
T Consensus 9 Tvi~Nf~~Ia~~L~R--~p~hv~ky~~ 33 (52)
T 1k8b_A 9 TIIRNFRELAKAVNR--DEEFFAKYLL 33 (52)
T ss_dssp EEECCHHHHHHHHHT--CHHHHHHHHH
T ss_pred EEEECHHHHHHHHCC--CHHHHHHHHH
Confidence 456789999999999 5887776654
No 8
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=15.97 E-value=60 Score=22.23 Aligned_cols=35 Identities=17% Similarity=-0.018 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCC-ccchhhHhhhHHHHHHHHHH
Q 032562 79 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (138)
Q Consensus 79 P~l~y~~~~y~~~~~-l~D~TeIf~~L~~~~k~~~i 113 (138)
|+.+..++.-.++++ -++.++|+|.|+.....+.+
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 567788886666554 58999999999988877653
No 9
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=13.94 E-value=32 Score=23.88 Aligned_cols=35 Identities=11% Similarity=-0.019 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhcCC-ccchhhHhhhHHHHHHHHHH
Q 032562 79 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (138)
Q Consensus 79 P~l~y~~~~y~~~~~-l~D~TeIf~~L~~~~k~~~i 113 (138)
|+.+..++.-.++++ -++.++|+|+|+.....+.+
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 556777776666554 48999999999888776543
No 10
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=13.09 E-value=54 Score=22.09 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=11.4
Q ss_pred cCCHHHHHhhcCc
Q 032562 37 YINPYDSAAQINM 49 (138)
Q Consensus 37 ~iNp~d~~~~lN~ 49 (138)
=+||.|.|+.+|.
T Consensus 42 Glni~~f~k~fn~ 54 (92)
T 1wib_A 42 GLSPKKVGDDIAK 54 (92)
T ss_dssp CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3799999999996
Done!