Query 032562
Match_columns 138
No_of_seqs 110 out of 236
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 04:16:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032562.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032562hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mzba_ a.4.5.42 (A:) Ferric u 20.4 19 0.0014 23.0 1.5 34 79-112 32-66 (134)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 14.8 75 0.0054 15.6 3.2 22 3-24 2-23 (30)
3 d1mmsa2 d.47.1.1 (A:8-70) Ribo 12.1 29 0.0021 20.4 0.5 13 37-49 25-37 (63)
4 d1otsa_ f.20.1.1 (A:) Clc chlo 10.3 1.3E+02 0.0096 22.6 4.2 43 67-110 399-443 (444)
5 d2clyc1 f.45.1.1 (C:5-70) ATPa 9.4 65 0.0047 19.0 1.5 23 85-107 12-39 (66)
6 d1ppjd2 f.23.11.1 (D:196-241) 9.4 1.5E+02 0.011 15.9 5.0 26 111-136 9-37 (46)
7 d1k8ba_ d.241.1.1 (A:) Transla 8.1 99 0.0072 16.9 1.9 25 35-61 9-33 (52)
8 d3cjsb1 d.47.1.1 (B:1-70) Ribo 7.9 51 0.0037 19.6 0.5 14 36-49 30-43 (70)
9 d1of9a_ a.64.1.4 (A:) Ameobapo 7.8 80 0.0058 17.9 1.5 21 27-48 55-75 (77)
10 d1wiba_ d.47.1.1 (A:) 60S ribo 7.7 52 0.0038 20.5 0.6 13 37-49 42-54 (92)
No 1
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.43 E-value=19 Score=23.04 Aligned_cols=34 Identities=18% Similarity=-0.008 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcCC-ccchhhHhhhHHHHHHHHH
Q 032562 79 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRL 112 (138)
Q Consensus 79 P~l~y~~~~y~~~~~-l~D~TeIf~~L~~~~k~~~ 112 (138)
|+.+..++...+.++ -+|.++|+|.|+.....+.
T Consensus 32 h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gl 66 (134)
T d1mzba_ 32 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 66 (134)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccE
Confidence 677778887777664 5899999999998877654
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.79 E-value=75 Score=15.59 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032562 3 DLLGWFLVFIFLISLLGILSYQ 24 (138)
Q Consensus 3 ~~~~wi~a~~~~~~ll~~~vy~ 24 (138)
+.+.+++.+....++.++.+++
T Consensus 2 e~i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 2 ETITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeehHHHHHHHHHHHHHHHHh
Confidence 4566777777667777777665
No 3
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.13 E-value=29 Score=20.40 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=11.1
Q ss_pred cCCHHHHHhhcCc
Q 032562 37 YINPYDSAAQINM 49 (138)
Q Consensus 37 ~iNp~d~~~~lN~ 49 (138)
=+|.+|.|+..|.
T Consensus 25 GiNi~~F~k~fN~ 37 (63)
T d1mmsa2 25 GVNIMEFCKRFNA 37 (63)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 4799999999984
No 4
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=10.28 E-value=1.3e+02 Score=22.62 Aligned_cols=43 Identities=9% Similarity=0.041 Sum_probs=29.8
Q ss_pred hhhH--HHHHHHHHHHHHHHHHHHhhcCCccchhhHhhhHHHHHHH
Q 032562 67 ITEH--WFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHL 110 (138)
Q Consensus 67 l~g~--w~~~lln~P~l~y~~~~y~~~~~l~D~TeIf~~L~~~~k~ 110 (138)
++|. -+.-++-.-+..+-+.+..+++.+|| +-+-|+++++++|
T Consensus 399 ltg~~~~~~p~~ia~~~a~~v~~~~~~~siY~-~~l~~~~~~~~~~ 443 (444)
T d1otsa_ 399 MTDNYQLILPMIITGLGATLLAQFTGGKPLYS-AILARTLAKQEAE 443 (444)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHH-HHHHHHHHHHHHC
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHhhhcc
Confidence 4553 23344455667788888888888888 6677788887765
No 5
>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.44 E-value=65 Score=18.99 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=13.9
Q ss_pred HHHHhhc----CCccchh-hHhhhHHHH
Q 032562 85 VRLYTRR----QHLVDVT-EIYSQLTWE 107 (138)
Q Consensus 85 ~~~y~~~----~~l~D~T-eIf~~L~~~ 107 (138)
++.|..+ -+++||+ |+.+.++.+
T Consensus 12 iREY~~Ks~~~Gg~vD~~Pe~~kel~~e 39 (66)
T d2clyc1 12 IREYRTKRQTSGGPVDAGPEYQQDLDRE 39 (66)
T ss_dssp HHHHHHHHTCCSSSSSCCTHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCCCCHHHHHHHHHH
Confidence 4555444 2789999 555555543
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.40 E-value=1.5e+02 Score=15.87 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHhhcC
Q 032562 111 RLYKLCYLIILLV---LCIFWLLWTVGRD 136 (138)
Q Consensus 111 ~~iKlafyll~Ff---~~ly~mi~~lv~~ 136 (138)
--+|....+.++. +|.-|-+||.+.+
T Consensus 9 mG~Kv~~~l~~l~~l~yy~KR~~Ws~lKs 37 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVYAMKRHKWSVLKS 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3344444444333 3344888887754
No 7
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.12 E-value=99 Score=16.90 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=19.1
Q ss_pred cccCCHHHHHhhcCcchHHHHHHHHHH
Q 032562 35 GDYINPYDSAAQINMLVFPEFFTQGTL 61 (138)
Q Consensus 35 ~D~iNp~d~~~~lN~lv~pE~~~h~~l 61 (138)
+-+.|=.|.|+++|+ -||...+-+.
T Consensus 9 Tvi~Nf~eI~~~L~R--~p~hv~kfl~ 33 (52)
T d1k8ba_ 9 TIIRNFRELAKAVNR--DEEFFAKYLL 33 (52)
T ss_dssp EEECCHHHHHHHHHT--CHHHHHHHHH
T ss_pred EeeecHHHHHHHhCC--CHHHHHHHHH
Confidence 446788999999998 5777766554
No 8
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.92 E-value=51 Score=19.61 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=11.5
Q ss_pred ccCCHHHHHhhcCc
Q 032562 36 DYINPYDSAAQINM 49 (138)
Q Consensus 36 D~iNp~d~~~~lN~ 49 (138)
.=+|.+|.|+..|.
T Consensus 30 ~GiNi~~Fck~fN~ 43 (70)
T d3cjsb1 30 HGANIMEFVKAFNA 43 (70)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHH
Confidence 34799999999984
No 9
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}
Probab=7.82 E-value=80 Score=17.86 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=14.6
Q ss_pred hhhhhhcccccCCHHHHHhhcC
Q 032562 27 LMYLTDLEGDYINPYDSAAQIN 48 (138)
Q Consensus 27 ~i~l~DLe~D~iNp~d~~~~lN 48 (138)
-..++.++.+ .||.+.|+.++
T Consensus 55 ~~ii~~l~~~-~~p~~iC~~l~ 75 (77)
T d1of9a_ 55 DKLIQLIEDK-VDANAICAKIH 75 (77)
T ss_dssp HHHHHHHHHT-CCHHHHHHHHS
T ss_pred HHHHHHHHHc-CCHHHHHHhcC
Confidence 4455556664 59999998875
No 10
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.72 E-value=52 Score=20.53 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=11.3
Q ss_pred cCCHHHHHhhcCc
Q 032562 37 YINPYDSAAQINM 49 (138)
Q Consensus 37 ~iNp~d~~~~lN~ 49 (138)
=+|+.+.|+++|.
T Consensus 42 Gini~~f~k~fN~ 54 (92)
T d1wiba_ 42 GLSPKKVGDDIAK 54 (92)
T ss_dssp CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3799999999996
Done!