BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032564
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 96/121 (79%), Gaps = 8/121 (6%)
Query: 1 MAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPP 60
MAAA QSLS + QA +YA PE GSSS+ + KI + R T TE+R+VNRPP
Sbjct: 51 MAAALQSLSRPNF---QATNYAVPE----YGSSSRSHTKIPS-RISTRTITEQRIVNRPP 102
Query: 61 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPK 120
EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+N Q K
Sbjct: 103 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAK 162
Query: 121 L 121
+
Sbjct: 163 I 163
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/62 (87%), Positives = 57/62 (91%)
Query: 51 TEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFG 110
T V+NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFG
Sbjct: 207 TNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFG 266
Query: 111 LM 112
LM
Sbjct: 267 LM 268
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/68 (82%), Positives = 60/68 (88%)
Query: 58 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANN 117
RPPEKRQRVPSAYN+FIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGL L+ N
Sbjct: 107 RPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNK 166
Query: 118 QPKLDDAS 125
+ K D S
Sbjct: 167 KGKQLDQS 174
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 63/86 (73%), Gaps = 9/86 (10%)
Query: 36 CNNKISAMRTPTNKATEER---------VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNP 86
C + AM+ P K ++ NRPPEKRQRVPSAYN+FIK+EIQRIKA NP
Sbjct: 128 CASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNP 187
Query: 87 DISHREAFSTAAKNWAHFPHIHFGLM 112
DISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 188 DISHREAFSAAAKNWAHFPHIHFGLM 213
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 63/86 (73%), Gaps = 9/86 (10%)
Query: 36 CNNKISAMRTPTNKATEER---------VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNP 86
C + AM+ P K ++ NRPPEKRQRVPSAYN+FIK+EIQRIKA NP
Sbjct: 128 CASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNP 187
Query: 87 DISHREAFSTAAKNWAHFPHIHFGLM 112
DISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 188 DISHREAFSAAAKNWAHFPHIHFGLM 213
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/64 (87%), Positives = 59/64 (92%), Gaps = 2/64 (3%)
Query: 56 VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEA 115
VNRPPEKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL+
Sbjct: 134 VNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLV--P 191
Query: 116 NNQP 119
+NQP
Sbjct: 192 DNQP 195
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/98 (64%), Positives = 77/98 (78%), Gaps = 4/98 (4%)
Query: 29 DLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDI 88
+ GSSS+ ++ M + + TE + RPPEKRQRVPSAYN+FIKEEI+RIKANNPDI
Sbjct: 82 EYGSSSR-YGRVPMMFSKND--TEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDI 138
Query: 89 SHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASG 126
SHREAFSTAAKNWAHFP+IHFGL +++ KLD+A G
Sbjct: 139 SHREAFSTAAKNWAHFPNIHFGLGSHESSK-KLDEAIG 175
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 62/77 (80%)
Query: 48 NKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHI 107
N+ E+ + RPPEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAH+P+I
Sbjct: 114 NQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNI 173
Query: 108 HFGLMLEANNQPKLDDA 124
HFGL KL D
Sbjct: 174 HFGLSPGHEGGKKLVDV 190
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/116 (56%), Positives = 75/116 (64%), Gaps = 15/116 (12%)
Query: 12 DVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNKATEER--------VV 56
+V QAP+ ASP S+S C N A M + NKAT+
Sbjct: 104 EVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSA 163
Query: 57 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 112
NR EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNWAHFPHIHFGLM
Sbjct: 164 NRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLM 219
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/116 (56%), Positives = 75/116 (64%), Gaps = 15/116 (12%)
Query: 12 DVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNKATEER--------VV 56
+V QAP+ ASP S+S C N A M + NKAT+
Sbjct: 104 EVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSA 163
Query: 57 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 112
NR EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNWAHFPHIHFGLM
Sbjct: 164 NRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLM 219
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/52 (94%), Positives = 50/52 (96%)
Query: 61 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 112
EKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 151 EKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 202
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 57/75 (76%)
Query: 37 NNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFST 96
N + S P + ++ RPPEKRQRVPSAYN+FIKEEIQRIK +NP+ISHREAFS
Sbjct: 83 NQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSA 142
Query: 97 AAKNWAHFPHIHFGL 111
AAKNWAH P +HFGL
Sbjct: 143 AAKNWAHLPRLHFGL 157
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 48/55 (87%)
Query: 54 RVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 108
+VVN+PPEKRQR PSAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP H
Sbjct: 126 QVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 44/49 (89%)
Query: 56 VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 104
V +PPEK+QR+PSAYN+F+++EIQRIK+ NP+I HREAFS AAKNWA +
Sbjct: 108 VVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Query: 31 GSSSKCN-NKISAMRTPTNKATEERV--VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPD 87
G + C N+ + +PT+ R V +PPEK+ R+PSAYN+F++EEIQRIKA PD
Sbjct: 70 GPCTDCRRNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPD 129
Query: 88 ISHREAFSTAAKNWA 102
I HREAFS AAKNWA
Sbjct: 130 IPHREAFSMAAKNWA 144
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 40/47 (85%)
Query: 62 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 108
++QR PSAYN F+KEEI+RIK+ P+I+H++AFSTAAKNWAH P I
Sbjct: 115 RKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 68 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105
++Y +F KE++ KA NPD + E AK W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELP 92
>sp|Q2TBV6|CC124_BOVIN Coiled-coil domain-containing protein 124 OS=Bos taurus GN=CCDC124
PE=2 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 53 ERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105
E V+R PE+R R +AY F + ++ R+K NP++ + K W P
Sbjct: 158 EEAVDRHPERRMR--AAYTAFEEAQLPRLKQENPNMRLSQLKQMLKKEWLRSP 208
>sp|Q28GD5|SOX7_XENTR Transcription factor Sox-7 OS=Xenopus tropicalis GN=sox7 PE=2 SV=1
Length = 362
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 37 NNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFST 96
++ +S R+P K +E R+ +R +A+ + K+E +R+ NPD+ + E
Sbjct: 24 SDGLSPHRSPREKGSETRI--------RRPMNAFMVWAKDERKRLAVQNPDLHNAELSKM 75
Query: 97 AAKNW 101
K+W
Sbjct: 76 LGKSW 80
>sp|O42342|SOX7_XENLA Transcription factor Sox-7 OS=Xenopus laevis GN=sox7 PE=2 SV=1
Length = 362
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 37 NNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFST 96
++ +S R+P K +E R+ +R +A+ + K+E +R+ NPD+ + E
Sbjct: 24 SDGLSPHRSPREKGSETRI--------RRPMNAFMVWAKDERKRLAVQNPDLHNAELSKM 75
Query: 97 AAKNW 101
K+W
Sbjct: 76 LGKSW 80
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 68 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105
S+Y +F KE++ KA NPD E AK W P
Sbjct: 55 SSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELP 92
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 68 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105
S+Y +F KE++ KA NPD E A+ W P
Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 92
>sp|P23090|GAG_MLVDU Gag polyprotein OS=Duplan murine leukemia virus GN=gag PE=3 SV=3
Length = 529
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 41 SAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 100
+A R+PTN A +R+ P E PSA+ + +KE +R +P+ +E + +
Sbjct: 334 NAGRSPTNLAKVKRITQGPNES----PSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFI 389
Query: 101 WAHFPHI 107
W P I
Sbjct: 390 WQSAPDI 396
>sp|Q49460|Y468_MYCGE Uncharacterized ABC transporter permease MG468 OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG468 PE=3 SV=3
Length = 1783
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 49 KATEERVVNRPPEKRQRVPSAYNQFIKEEI----QRIKANNPDISHREAFS--TAAKNWA 102
K T+++ N P+K V S Y K+++ KA+N DIS F+ A NW
Sbjct: 234 KITQKQQTNNDPQKDSTVNSLYKTNNKDKVWFKSDETKADNTDISANYLFTGGNEAANW- 292
Query: 103 HFPHIHFGLMLEANNQP 119
FP+++ + ++ P
Sbjct: 293 -FPNLYANIPIDLEIDP 308
>sp|Q9BT81|SOX7_HUMAN Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1
Length = 388
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 25 ECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKAN 84
EC S + + R P +K +E R+ +R +A+ + K+E +R+
Sbjct: 15 ECPALDAELSDGQSPPAVPRPPGDKGSESRI--------RRPMNAFMVWAKDERKRLAVQ 66
Query: 85 NPDISHREAFSTAAKNW 101
NPD+ + E K+W
Sbjct: 67 NPDLHNAELSKMLGKSW 83
>sp|Q4IB96|AEF1_GIBZE Chromatin modification-related protein EAF1 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=EAF1 PE=3 SV=1
Length = 1629
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 14/71 (19%)
Query: 16 HQAPSYASP--ECRIDLGSSSKCNNKI------SAMRTPTNKATEERVVNRPPEKRQRVP 67
H+ P Y P + +I+ G+ + +K +R P+ K E+RV+ PP+
Sbjct: 387 HEGPQYVEPAEQKKIEDGTHERDTDKYHQSHQDGDIRAPSTKDLEDRVLEAPPD------ 440
Query: 68 SAYNQFIKEEI 78
SA Q ++E I
Sbjct: 441 SAEAQLLQESI 451
>sp|Q5D144|TFAM_PIG Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2
SV=1
Length = 246
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 68 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105
++Y +F KE++ KA NPD + E A+ W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELP 92
>sp|Q5R8X8|CC124_PONAB Coiled-coil domain-containing protein 124 OS=Pongo abelii
GN=CCDC124 PE=2 SV=1
Length = 223
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 53 ERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105
E +R PE+RQR +A+ F + ++ R+K NP++ + K W P
Sbjct: 158 EEAADRHPERRQR--AAFTAFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSP 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.125 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,246,650
Number of Sequences: 539616
Number of extensions: 1898560
Number of successful extensions: 5138
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 5088
Number of HSP's gapped (non-prelim): 76
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)