Query 032564
Match_columns 138
No_of_seqs 108 out of 123
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 04:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nm9_A HMG-D, high mobility gr 98.5 2.5E-07 8.5E-12 60.4 6.1 46 61-106 2-47 (73)
2 1hme_A High mobility group pro 98.5 3.7E-07 1.2E-11 59.7 5.9 49 58-106 2-50 (77)
3 1wz6_A HMG-box transcription f 98.4 5.2E-07 1.8E-11 59.8 5.8 49 58-106 3-51 (82)
4 1wxl_A Single-strand recogniti 98.4 8.6E-07 2.9E-11 57.8 6.0 45 60-104 1-45 (73)
5 2crj_A SWI/SNF-related matrix- 98.3 1.2E-06 4.2E-11 59.6 6.8 49 58-106 3-51 (92)
6 2cs1_A PMS1 protein homolog 1; 98.3 1E-06 3.4E-11 60.0 6.2 48 59-106 4-51 (92)
7 1wgf_A Upstream binding factor 98.3 1.6E-06 5.4E-11 59.0 7.0 50 57-106 15-64 (90)
8 1hry_A Human SRY; DNA, DNA-bin 98.3 8.3E-07 2.8E-11 57.8 5.2 46 60-105 2-47 (76)
9 1j46_A SRY, sex-determining re 98.3 1.3E-06 4.6E-11 58.5 5.9 47 60-106 2-48 (85)
10 2co9_A Thymus high mobility gr 98.3 1.5E-06 5.1E-11 60.5 6.2 50 57-106 12-61 (102)
11 2e6o_A HMG box-containing prot 98.3 1.2E-06 4.2E-11 59.1 5.6 50 57-106 12-61 (87)
12 1ckt_A High mobility group 1 p 98.3 1.6E-06 5.5E-11 55.6 5.6 44 62-105 1-46 (71)
13 2eqz_A High mobility group pro 98.2 2.8E-06 9.7E-11 57.0 6.5 48 58-105 11-60 (86)
14 3f27_D Transcription factor SO 98.2 1.9E-06 6.5E-11 56.9 5.5 46 60-105 4-49 (83)
15 1i11_A Transcription factor SO 98.2 2.5E-06 8.7E-11 56.4 6.1 46 61-106 3-48 (81)
16 1k99_A Upstream binding factor 98.2 1.8E-06 6.1E-11 60.1 5.6 49 58-106 6-54 (99)
17 4a3n_A Transcription factor SO 98.2 2.1E-06 7.2E-11 54.8 5.2 44 62-105 2-45 (71)
18 1gt0_D Transcription factor SO 98.2 3.1E-06 1.1E-10 55.7 6.0 46 61-106 1-46 (80)
19 4euw_A Transcription factor SO 98.2 3.4E-06 1.2E-10 59.2 6.3 50 57-106 24-73 (106)
20 2gzk_A Sex-determining region 98.1 5.5E-06 1.9E-10 60.4 6.4 49 57-105 83-131 (159)
21 3u2b_C Transcription factor SO 98.1 6.2E-06 2.1E-10 53.8 5.5 44 62-105 2-45 (79)
22 1aab_A High mobility group pro 98.1 2.5E-06 8.7E-11 56.6 3.6 49 58-106 3-53 (83)
23 2lef_A LEF-1 HMG, protein (lym 98.1 7E-06 2.4E-10 54.9 5.7 45 62-106 2-46 (86)
24 2yrq_A High mobility group pro 98.1 7.5E-06 2.6E-10 60.7 6.2 49 58-106 97-145 (173)
25 2d7l_A WD repeat and HMG-box D 98.0 1.1E-05 3.8E-10 54.9 6.4 47 60-106 3-50 (81)
26 2lhj_A High mobility group pro 98.0 2.3E-06 8E-11 58.7 2.7 51 56-106 16-68 (97)
27 1cg7_A Protein (NON histone pr 98.0 1.8E-06 6.1E-11 59.0 1.4 49 57-105 15-63 (93)
28 2yrq_A High mobility group pro 97.9 2.4E-05 8.3E-10 57.9 6.3 49 58-106 11-61 (173)
29 3tq6_A Transcription factor A, 97.7 2.7E-05 9.2E-10 60.6 4.7 47 60-106 7-53 (214)
30 3tmm_A Transcription factor A, 97.7 3.6E-05 1.2E-09 60.7 4.6 50 57-106 36-85 (238)
31 1l8y_A Upstream binding factor 97.6 9.4E-05 3.2E-09 52.5 5.7 44 61-105 3-46 (91)
32 3fgh_A Transcription factor A, 97.5 7.4E-05 2.5E-09 47.7 3.6 40 62-105 2-41 (67)
33 2gzk_A Sex-determining region 97.5 0.00018 6E-09 52.3 5.9 47 60-106 2-48 (159)
34 1v63_A Nucleolar transcription 97.3 0.00035 1.2E-08 48.7 5.0 46 59-106 5-50 (101)
35 1v64_A Nucleolar transcription 97.0 0.00074 2.5E-08 47.7 4.4 45 58-106 12-57 (108)
36 2yuk_A Myeloid/lymphoid or mix 96.9 0.00015 5.2E-09 51.1 0.2 44 60-105 20-63 (90)
37 3tmm_A Transcription factor A, 96.6 0.00045 1.5E-08 54.4 0.9 44 59-106 143-186 (238)
38 3tq6_A Transcription factor A, 96.6 0.00049 1.7E-08 53.4 0.9 44 59-106 111-154 (214)
39 2cto_A Novel protein; high mob 95.7 0.0054 1.8E-07 43.0 2.4 44 60-105 8-54 (93)
40 3fgx_A Rbstp2171; structural g 31.2 21 0.00073 26.4 1.7 11 66-76 46-56 (114)
41 1t3u_A Conserved hypothetical 22.8 1.1E+02 0.0039 20.4 4.1 32 72-103 33-64 (104)
42 2vqc_A Hypothetical 13.2 kDa p 21.1 35 0.0012 25.2 1.3 21 66-88 43-63 (118)
No 1
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=98.50 E-value=2.5e-07 Score=60.39 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=42.9
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 61 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 61 eK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
.+++|.+|||..|+++.-..|+++||+++..|+-+.++..|+..+.
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 47 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD 47 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc
Confidence 4688999999999999999999999999999999999999998653
No 2
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=98.45 E-value=3.7e-07 Score=59.65 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=45.0
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 58 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 58 kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
+-|.+++|.+|||..|+++.-..|+++||++++.|..+.++..|+..+.
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 50 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 50 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 3577889999999999999999999999999999999999999997543
No 3
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=98.40 E-value=5.2e-07 Score=59.85 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=45.5
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 58 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 58 kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
.++.+++|.+|||..|+++.-..|+++||++++.|.-+.++..|+..+.
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 51 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDP 51 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCH
Confidence 4678899999999999999999999999999999999999999998653
No 4
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=98.36 E-value=8.6e-07 Score=57.82 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=42.6
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 032564 60 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 104 (138)
Q Consensus 60 peK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~ 104 (138)
|.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 567899999999999999999999999999999999999999975
No 5
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=98.35 E-value=1.2e-06 Score=59.61 Aligned_cols=49 Identities=16% Similarity=0.398 Sum_probs=45.4
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 58 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 58 kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
+-|.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..+.
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 51 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQP 51 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCH
Confidence 4578899999999999999999999999999999999999999998654
No 6
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=1e-06 Score=60.05 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=44.6
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 59 PPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 59 ppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
.|.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..+.
T Consensus 4 ~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 51 (92)
T 2cs1_A 4 GSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSE 51 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCH
Confidence 567889999999999999999999999999999999999999998654
No 7
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.33 E-value=1.6e-06 Score=58.97 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 57 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 57 ~kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
.+.|.+++|.+|||..|+++.-..|+++||++++.|.-+.++..|+..+.
T Consensus 15 ~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~ 64 (90)
T 1wgf_A 15 KGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSE 64 (90)
T ss_dssp SSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 35677889999999999999999999999999999999999999998653
No 8
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=98.32 E-value=8.3e-07 Score=57.82 Aligned_cols=46 Identities=13% Similarity=0.355 Sum_probs=42.7
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032564 60 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105 (138)
Q Consensus 60 peK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P 105 (138)
|.+++|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCC
Confidence 5678999999999999999999999999999999999999999864
No 9
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=98.30 E-value=1.3e-06 Score=58.51 Aligned_cols=47 Identities=13% Similarity=0.350 Sum_probs=43.6
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 60 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 60 peK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
|.+++|.+|||..|+++.-..|+++||++++.|.-+.++..|+..+.
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~ 48 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTE 48 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCH
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
Confidence 56788999999999999999999999999999999999999998643
No 10
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.29 E-value=1.5e-06 Score=60.47 Aligned_cols=50 Identities=26% Similarity=0.469 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 57 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 57 ~kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
.+.|.+++|.+|||..|+++.-..|+++||+++..|+-+.++..|+..+.
T Consensus 12 ~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~ 61 (102)
T 2co9_A 12 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGE 61 (102)
T ss_dssp CCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCH
Confidence 35677889999999999999999999999999999999999999998654
No 11
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=98.28 E-value=1.2e-06 Score=59.05 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 57 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 57 ~kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
.+.|.+++|.++||..|+++.-..|++++|++++.|.-+.++..|+..+.
T Consensus 12 ~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~ 61 (87)
T 2e6o_A 12 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKN 61 (87)
T ss_dssp CCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCH
Confidence 34567889999999999999999999999999999999999999997543
No 12
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=98.27 E-value=1.6e-06 Score=55.64 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=40.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 032564 62 KRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFP 105 (138)
Q Consensus 62 K~~R~PSAYN~FmKeEIqRiKa~nP~isH--KEaFs~AAkNWa~~P 105 (138)
|++|.+|||..|+++.-..|+++||+++. .|.-+.++..|+..+
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 46 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 46 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCC
Confidence 57899999999999999999999999976 999999999998754
No 13
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.8e-06 Score=57.01 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=43.5
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCC
Q 032564 58 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDIS--HREAFSTAAKNWAHFP 105 (138)
Q Consensus 58 kppeK~~R~PSAYN~FmKeEIqRiKa~nP~is--HKEaFs~AAkNWa~~P 105 (138)
+-|.+++|.+|||..|+++.-..|+++||+++ ..|.-+.++..|+..+
T Consensus 11 kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (86)
T 2eqz_A 11 GDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 60 (86)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 45677899999999999999999999999997 4999999999999854
No 14
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=98.24 E-value=1.9e-06 Score=56.93 Aligned_cols=46 Identities=24% Similarity=0.459 Sum_probs=41.1
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032564 60 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105 (138)
Q Consensus 60 peK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P 105 (138)
+.+.+|.+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 4 ~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (83)
T 3f27_D 4 TSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 49 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 5678899999999999999999999999999999999999998754
No 15
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.23 E-value=2.5e-06 Score=56.38 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=42.8
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 61 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 61 eK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
.+.+|.+|||..|+++.-..|++++|++++.|.-+.++..|+..+.
T Consensus 3 ~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 48 (81)
T 1i11_A 3 PHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTN 48 (81)
T ss_dssp CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCH
Confidence 4678999999999999999999999999999999999999998653
No 16
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=98.23 E-value=1.8e-06 Score=60.06 Aligned_cols=49 Identities=16% Similarity=0.374 Sum_probs=45.4
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 58 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 58 kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
+.|.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..+.
T Consensus 6 kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~ 54 (99)
T 1k99_A 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPE 54 (99)
T ss_dssp SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 4677889999999999999999999999999999999999999998654
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=98.21 E-value=2.1e-06 Score=54.75 Aligned_cols=44 Identities=25% Similarity=0.458 Sum_probs=39.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032564 62 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105 (138)
Q Consensus 62 K~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P 105 (138)
|.+|.+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 2 k~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (71)
T 4a3n_A 2 SIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 45 (71)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 56889999999999999999999999999999999999998754
No 18
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=98.20 E-value=3.1e-06 Score=55.70 Aligned_cols=46 Identities=13% Similarity=0.361 Sum_probs=42.5
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 61 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 61 eK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
++++|.+|||..|+++.-..|++++|+++..|.-+.++..|+..+.
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 46 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSE 46 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 3678999999999999999999999999999999999999997653
No 19
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=98.18 E-value=3.4e-06 Score=59.23 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 57 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 57 ~kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
.+.+.+++|.++||..|+++.-..|++++|++++.|.-+.++..|+..+.
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~ 73 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNE 73 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCH
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCH
Confidence 45678899999999999999999999999999999999999999988653
No 20
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=98.12 E-value=5.5e-06 Score=60.39 Aligned_cols=49 Identities=24% Similarity=0.420 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032564 57 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105 (138)
Q Consensus 57 ~kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P 105 (138)
.+.|.+++|.+|||..||++.-..|+++||+++..|..+.++..|+..+
T Consensus 83 ~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 131 (159)
T 2gzk_A 83 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 131 (159)
T ss_dssp SCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 3456778999999999999999999999999999999999999999754
No 21
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=98.08 E-value=6.2e-06 Score=53.82 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=41.1
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032564 62 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105 (138)
Q Consensus 62 K~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P 105 (138)
+.+|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 2 ~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (79)
T 3u2b_C 2 HIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLK 45 (79)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999754
No 22
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=98.08 E-value=2.5e-06 Score=56.62 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=43.9
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCCC
Q 032564 58 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFPH 106 (138)
Q Consensus 58 kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isH--KEaFs~AAkNWa~~P~ 106 (138)
+-|.+++|.+|||..|+++.-..|+++||+++. .|.-+.++..|+..+.
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~ 53 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSA 53 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCH
Confidence 357788999999999999999999999999975 9999999999997543
No 23
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.07 E-value=7e-06 Score=54.94 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=41.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 62 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 62 K~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
+.+|.+|||..|+++.-..|+++||++++.|.-+.++..|+..+.
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~ 46 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSR 46 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCH
Confidence 568899999999999999999999999999999999999997653
No 24
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=7.5e-06 Score=60.71 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=44.8
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 58 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 58 kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
+-|.+++|.+|||..|+++....|+++||+++..|..+.++..|+..+.
T Consensus 97 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~ 145 (173)
T 2yrq_A 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 145 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCG
T ss_pred cCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 3567788999999999999999999999999999999999999998653
No 25
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=1.1e-05 Score=54.92 Aligned_cols=47 Identities=15% Similarity=0.328 Sum_probs=43.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCC-HHHHHHHHHHhhccCCC
Q 032564 60 PEKRQRVPSAYNQFIKEEIQRIKANNPDIS-HREAFSTAAKNWAHFPH 106 (138)
Q Consensus 60 peK~~R~PSAYN~FmKeEIqRiKa~nP~is-HKEaFs~AAkNWa~~P~ 106 (138)
+.+++|.+|||..|+++.-..|+.+||+++ ..|.-+.++..|+..+.
T Consensus 3 ~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~ 50 (81)
T 2d7l_A 3 SGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLST 50 (81)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCH
Confidence 456789999999999999999999999998 99999999999998654
No 26
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=98.02 E-value=2.3e-06 Score=58.70 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=46.1
Q ss_pred cCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCCC
Q 032564 56 VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDIS--HREAFSTAAKNWAHFPH 106 (138)
Q Consensus 56 ~~kppeK~~R~PSAYN~FmKeEIqRiKa~nP~is--HKEaFs~AAkNWa~~P~ 106 (138)
..+.|.+++|.+|||..|+++.-..|+++||+++ ..|.-+.++..|+..+.
T Consensus 16 ~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 68 (97)
T 2lhj_A 16 AKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSD 68 (97)
T ss_dssp TTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCH
Confidence 3456788899999999999999999999999999 99999999999998543
No 27
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.97 E-value=1.8e-06 Score=59.04 Aligned_cols=49 Identities=24% Similarity=0.482 Sum_probs=45.0
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032564 57 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105 (138)
Q Consensus 57 ~kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P 105 (138)
.+.|.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 15 ~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 63 (93)
T 1cg7_A 15 KKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALT 63 (93)
T ss_dssp CCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 3567788999999999999999999999999999999999999999754
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=2.4e-05 Score=57.95 Aligned_cols=49 Identities=20% Similarity=0.391 Sum_probs=44.6
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCC--CCHHHHHHHHHHhhccCCC
Q 032564 58 RPPEKRQRVPSAYNQFIKEEIQRIKANNPD--ISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 58 kppeK~~R~PSAYN~FmKeEIqRiKa~nP~--isHKEaFs~AAkNWa~~P~ 106 (138)
+.|.+++|.+|||..||++....|++.||+ ++..|+.+.++..|+..+.
T Consensus 11 ~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 61 (173)
T 2yrq_A 11 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA 61 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 457788999999999999999999999999 6899999999999987654
No 29
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=97.74 E-value=2.7e-05 Score=60.55 Aligned_cols=47 Identities=30% Similarity=0.522 Sum_probs=43.7
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 60 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 60 peK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
|.+++|.+|||..||++....|+++||+++..|+.+.++..|+..+.
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~ 53 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPD 53 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCH
Confidence 56788999999999999999999999999999999999999998654
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=97.68 E-value=3.6e-05 Score=60.69 Aligned_cols=50 Identities=28% Similarity=0.468 Sum_probs=45.0
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 57 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 57 ~kppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
.+-|.+++|.+|||..||++....|+++||+++..|+.+.++..|+..+.
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~ 85 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPD 85 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCH
Confidence 33467889999999999999999999999999999999999999998643
No 31
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=97.63 E-value=9.4e-05 Score=52.53 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=41.1
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032564 61 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105 (138)
Q Consensus 61 eK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P 105 (138)
.|++|.+|||+.||.+....+++.+|+ +..|+-+.++..|+...
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls 46 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNME 46 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC
Confidence 478899999999999999999999999 99999999999999854
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=97.52 E-value=7.4e-05 Score=47.68 Aligned_cols=40 Identities=35% Similarity=0.679 Sum_probs=36.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032564 62 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105 (138)
Q Consensus 62 K~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P 105 (138)
+++|.+|||..||++.-..|+..+| .|..+.++..|+..+
T Consensus 2 ~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 2 KPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 5789999999999999999999887 599999999999854
No 33
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.51 E-value=0.00018 Score=52.35 Aligned_cols=47 Identities=13% Similarity=0.350 Sum_probs=43.8
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 60 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 60 peK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
|.+.+|-++||-.|++++-.+|+..||+++..|+.+.++..|+..+.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~ 48 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTE 48 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhH
Confidence 57888999999999999999999999999999999999999997654
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.28 E-value=0.00035 Score=48.74 Aligned_cols=46 Identities=11% Similarity=0.320 Sum_probs=37.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 59 PPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 59 ppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
-+.+++|.+|||..||++.+. ...+++++..|+.+.++..|+..+.
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~ 50 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQ 50 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 356678889999999999954 3345568889999999999998654
No 35
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.01 E-value=0.00074 Score=47.70 Aligned_cols=45 Identities=16% Similarity=0.422 Sum_probs=39.3
Q ss_pred CCCCCC-CCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 58 RPPEKR-QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 58 kppeK~-~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
+-+.++ +|.+|||..||++.-..|+ +++..|..+.++..|+..+.
T Consensus 12 kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~ 57 (108)
T 1v64_A 12 KFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQ 57 (108)
T ss_dssp CTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCH
Confidence 445566 8899999999999999888 89999999999999998654
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=96.92 E-value=0.00015 Score=51.11 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=36.1
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032564 60 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 105 (138)
Q Consensus 60 peK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P 105 (138)
|..++|.||||-.||.++-..||++||+++ +.|..+++.|+..+
T Consensus 20 pnaPKRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~ls 63 (90)
T 2yuk_A 20 EALGEMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKAS 63 (90)
T ss_dssp HHHGGGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHSC
T ss_pred CCCCCCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcCC
Confidence 345688999999999999999999999995 34555669998754
No 37
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=96.62 E-value=0.00045 Score=54.42 Aligned_cols=44 Identities=32% Similarity=0.575 Sum_probs=38.6
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 59 PPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 59 ppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
.|.+++|.+|||..||++....|+.++|+ |+.+.++..|+..+.
T Consensus 143 dp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~ 186 (238)
T 3tmm_A 143 LLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSD 186 (238)
T ss_dssp HTTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCT
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCH
Confidence 35678999999999999999999988876 999999999998643
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=96.58 E-value=0.00049 Score=53.45 Aligned_cols=44 Identities=32% Similarity=0.575 Sum_probs=38.7
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032564 59 PPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 106 (138)
Q Consensus 59 ppeK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~~P~ 106 (138)
.|.+++|.+|||..||++....|+.++|+ |+.+.++..|+..+.
T Consensus 111 dp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~ 154 (214)
T 3tq6_A 111 LLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSD 154 (214)
T ss_dssp HTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCCH
T ss_pred cccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCCH
Confidence 46678899999999999999999988876 999999999998653
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.66 E-value=0.0054 Score=43.04 Aligned_cols=44 Identities=18% Similarity=0.402 Sum_probs=38.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHH---HHhhccCC
Q 032564 60 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTA---AKNWAHFP 105 (138)
Q Consensus 60 peK~~R~PSAYN~FmKeEIqRiKa~nP~isHKEaFs~A---AkNWa~~P 105 (138)
+.+++|.+|||..||++.-.+||.+ +++..|.=+.+ +..|+...
T Consensus 8 ~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls 54 (93)
T 2cto_A 8 MPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLR 54 (93)
T ss_dssp CCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCC
Confidence 3457889999999999999999998 78889988888 99998753
No 40
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=31.22 E-value=21 Score=26.36 Aligned_cols=11 Identities=36% Similarity=0.404 Sum_probs=9.4
Q ss_pred CCchHHHHHHH
Q 032564 66 VPSAYNQFIKE 76 (138)
Q Consensus 66 ~PSAYN~FmKe 76 (138)
.|..||+|+++
T Consensus 46 t~~~YnRyi~t 56 (114)
T 3fgx_A 46 KVSDISRFTKE 56 (114)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 68899999974
No 41
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=22.75 E-value=1.1e+02 Score=20.44 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhhcc
Q 032564 72 QFIKEEIQRIKANNPDISHREAFSTAAKNWAH 103 (138)
Q Consensus 72 ~FmKeEIqRiKa~nP~isHKEaFs~AAkNWa~ 103 (138)
.|+-+.|+.|+..+|.++-......||-|-++
T Consensus 33 ~~vd~~~~~i~~~~~~~~~~r~~vmaALnlad 64 (104)
T 1t3u_A 33 RYLDGKMREIRSSGKVIGADRVAVMAALNITH 64 (104)
T ss_dssp HHHHHHHHHHHTTTCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 58889999999999999999999999999776
No 42
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=21.07 E-value=35 Score=25.23 Aligned_cols=21 Identities=48% Similarity=0.779 Sum_probs=18.0
Q ss_pred CCchHHHHHHHHHHHHHhhCCCC
Q 032564 66 VPSAYNQFIKEEIQRIKANNPDI 88 (138)
Q Consensus 66 ~PSAYN~FmKeEIqRiKa~nP~i 88 (138)
+||||| +..-++-|-+.+||-
T Consensus 43 ~~sayn--iqr~l~~ice~hpde 63 (118)
T 2vqc_A 43 VPSAYN--IQRALKAICERHPDE 63 (118)
T ss_dssp HHHHHH--HHHHHHHHHHHCTTT
T ss_pred cchHhH--HHHHHHHHHhcCCch
Confidence 789999 578888999999973
Done!