Query 032565
Match_columns 138
No_of_seqs 137 out of 1598
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 1.3E-23 2.8E-28 129.8 16.0 121 15-136 1-141 (142)
2 PRK11478 putative lyase; Provi 99.9 3E-23 6.5E-28 126.1 16.0 122 13-135 2-128 (129)
3 PLN02367 lactoylglutathione ly 99.9 8.8E-23 1.9E-27 133.2 16.4 122 16-137 74-223 (233)
4 PLN03042 Lactoylglutathione ly 99.9 1.7E-22 3.8E-27 129.1 16.4 122 16-137 26-175 (185)
5 cd08352 Glo_EDI_BRP_like_1 Thi 99.9 2E-22 4.3E-27 121.4 14.7 119 16-135 2-125 (125)
6 cd07241 Glo_EDI_BRP_like_3 Thi 99.9 1.7E-22 3.7E-27 121.9 14.0 117 17-134 1-125 (125)
7 cd08342 HPPD_N_like N-terminal 99.9 1.4E-22 3E-27 124.5 13.7 118 18-137 1-124 (136)
8 TIGR03645 glyox_marine lactoyl 99.9 4E-22 8.6E-27 125.7 15.4 122 16-137 3-152 (162)
9 PRK04101 fosfomycin resistance 99.9 3.4E-22 7.4E-27 123.1 14.5 113 14-136 1-119 (139)
10 cd08364 FosX FosX, a fosfomyci 99.9 3.3E-22 7.2E-27 122.0 14.2 115 14-136 1-122 (131)
11 TIGR00068 glyox_I lactoylgluta 99.9 5.3E-22 1.1E-26 123.7 14.2 123 11-137 11-142 (150)
12 TIGR03081 metmalonyl_epim meth 99.9 2.9E-22 6.3E-27 121.4 12.3 119 17-135 1-128 (128)
13 cd08347 PcpA_C_like C-terminal 99.9 6.4E-22 1.4E-26 124.1 14.1 113 17-137 1-121 (157)
14 cd07243 2_3_CTD_C C-terminal d 99.9 9E-22 1.9E-26 121.8 14.2 114 13-135 2-124 (143)
15 cd07233 Glyoxalase_I Glyoxalas 99.9 1.5E-21 3.2E-26 117.2 14.4 114 18-134 1-121 (121)
16 cd07253 Glo_EDI_BRP_like_2 Thi 99.9 2.4E-21 5.2E-26 116.7 15.1 117 15-136 1-125 (125)
17 cd07245 Glo_EDI_BRP_like_9 Thi 99.9 1E-21 2.2E-26 116.3 13.2 110 18-133 1-114 (114)
18 cd08363 FosB FosB, a fosfomyci 99.9 1.6E-21 3.6E-26 119.0 12.9 110 18-137 1-116 (131)
19 cd07255 Glo_EDI_BRP_like_12 Th 99.9 6.3E-21 1.4E-25 115.2 15.3 113 16-137 1-120 (125)
20 PLN02300 lactoylglutathione ly 99.9 3.1E-21 6.6E-26 131.7 15.0 121 13-137 20-149 (286)
21 cd09011 Glo_EDI_BRP_like_23 Th 99.9 4.5E-21 9.7E-26 115.3 13.8 113 17-136 2-119 (120)
22 cd09014 BphC-JF8_C_like C-term 99.9 5.3E-21 1.2E-25 121.0 14.5 118 13-136 2-127 (166)
23 PRK10291 glyoxalase I; Provisi 99.9 2.9E-21 6.3E-26 117.5 12.8 112 22-137 1-121 (129)
24 cd08355 Glo_EDI_BRP_like_14 Th 99.9 2E-20 4.3E-25 112.7 15.7 116 21-136 3-122 (122)
25 cd09013 BphC-JF8_N_like N-term 99.9 5.4E-21 1.2E-25 115.1 13.2 111 13-137 2-119 (121)
26 cd08361 PpCmtC_N N-terminal do 99.9 1.3E-20 2.9E-25 113.9 14.9 109 13-137 2-120 (124)
27 cd07267 THT_Oxygenase_N N-term 99.9 1E-20 2.2E-25 112.6 13.9 106 15-135 1-109 (113)
28 cd07252 BphC1-RGP6_N_like N-te 99.9 1.3E-20 2.7E-25 113.4 14.0 106 17-136 2-117 (120)
29 cd07247 SgaA_N_like N-terminal 99.9 2E-20 4.3E-25 111.4 14.7 109 18-135 1-114 (114)
30 cd07257 THT_oxygenase_C The C- 99.9 3.4E-21 7.4E-26 120.5 11.8 114 17-136 1-125 (153)
31 cd07265 2_3_CTD_N N-terminal d 99.9 1.4E-20 2.9E-25 113.4 13.9 108 15-136 2-119 (122)
32 cd07263 Glo_EDI_BRP_like_16 Th 99.9 1.8E-20 4E-25 111.9 14.4 113 20-135 1-119 (119)
33 cd08351 ChaP_like ChaP, an enz 99.9 2.3E-20 4.9E-25 112.7 14.4 107 15-137 2-122 (123)
34 cd07242 Glo_EDI_BRP_like_6 Thi 99.9 2.9E-20 6.3E-25 112.8 14.9 114 17-136 1-128 (128)
35 cd07244 FosA FosA, a Fosfomyci 99.9 1.4E-20 3E-25 113.3 12.9 107 17-136 1-110 (121)
36 cd07240 ED_TypeI_classII_N N-t 99.9 2E-20 4.2E-25 111.7 13.4 106 16-136 1-114 (117)
37 cd08346 PcpA_N_like N-terminal 99.9 1.3E-20 2.8E-25 113.7 12.6 116 17-134 1-126 (126)
38 cd08348 BphC2-C3-RGP6_C_like T 99.9 6.4E-20 1.4E-24 112.2 15.5 113 17-137 1-121 (134)
39 cd08345 Fosfomycin_RP Fosfomyc 99.9 1.8E-20 4E-25 111.3 12.7 106 20-137 1-112 (113)
40 cd08362 BphC5-RrK37_N_like N-t 99.9 2.1E-20 4.6E-25 112.1 13.1 108 15-136 1-117 (120)
41 cd07249 MMCE Methylmalonyl-CoA 99.9 1.9E-20 4E-25 113.4 12.9 118 18-135 1-128 (128)
42 cd07264 Glo_EDI_BRP_like_15 Th 99.9 5.7E-20 1.2E-24 110.9 14.7 115 18-136 1-125 (125)
43 cd08359 Glo_EDI_BRP_like_22 Th 99.9 5.2E-20 1.1E-24 110.3 14.3 110 20-135 4-119 (119)
44 cd07246 Glo_EDI_BRP_like_8 Thi 99.9 1.1E-19 2.4E-24 109.1 15.7 113 21-135 5-121 (122)
45 cd08360 MhqB_like_C C-terminal 99.9 5.6E-20 1.2E-24 112.6 14.1 107 16-136 2-120 (134)
46 cd07237 BphC1-RGP6_C_like C-te 99.9 3E-20 6.5E-25 116.3 12.9 112 15-136 7-131 (154)
47 PF00903 Glyoxalase: Glyoxalas 99.9 2.3E-21 4.9E-26 117.1 7.1 117 17-133 1-128 (128)
48 PRK06724 hypothetical protein; 99.9 5.7E-20 1.2E-24 111.6 12.9 108 14-137 4-124 (128)
49 cd07256 HPCD_C_class_II C-term 99.8 1.1E-19 2.3E-24 114.6 14.1 112 16-136 2-123 (161)
50 cd07239 BphC5-RK37_C_like C-te 99.8 1.3E-19 2.9E-24 112.2 13.6 105 16-136 3-117 (144)
51 cd07266 HPCD_N_class_II N-term 99.8 1.1E-19 2.4E-24 109.2 12.9 107 15-136 2-118 (121)
52 cd08354 Glo_EDI_BRP_like_13 Th 99.8 3E-19 6.5E-24 107.3 14.1 114 18-136 1-122 (122)
53 cd08350 BLMT_like BLMT, a bleo 99.8 2.8E-19 6E-24 107.5 13.5 103 21-136 6-119 (120)
54 cd08343 ED_TypeI_classII_C C-t 99.8 3.7E-19 8E-24 108.5 13.9 108 19-137 1-118 (131)
55 cd08349 BLMA_like Bleomycin bi 99.8 5.7E-19 1.2E-23 104.5 13.7 105 22-135 3-112 (112)
56 cd08357 Glo_EDI_BRP_like_18 Th 99.8 4.9E-19 1.1E-23 106.8 13.4 111 20-136 2-125 (125)
57 cd08358 Glo_EDI_BRP_like_21 Th 99.8 1.2E-18 2.6E-23 105.1 14.9 110 17-135 2-126 (127)
58 cd07261 Glo_EDI_BRP_like_11 Th 99.8 9.5E-19 2.1E-23 104.1 14.4 106 21-135 2-114 (114)
59 cd07254 Glo_EDI_BRP_like_20 Th 99.8 1.2E-18 2.6E-23 104.6 14.9 107 19-137 3-118 (120)
60 cd07235 MRD Mitomycin C resist 99.8 7.3E-19 1.6E-23 105.8 13.7 112 18-134 1-121 (122)
61 cd09012 Glo_EDI_BRP_like_24 Th 99.8 5.4E-19 1.2E-23 106.7 13.0 113 18-135 1-123 (124)
62 PF12681 Glyoxalase_2: Glyoxal 99.8 6.5E-19 1.4E-23 103.8 12.7 100 23-134 1-108 (108)
63 cd08356 Glo_EDI_BRP_like_17 Th 99.8 6E-19 1.3E-23 105.0 12.4 100 21-135 5-113 (113)
64 cd07238 Glo_EDI_BRP_like_5 Thi 99.8 1.9E-18 4.1E-23 102.6 14.3 101 21-136 4-111 (112)
65 TIGR03211 catechol_2_3 catecho 99.8 7.8E-19 1.7E-23 120.8 13.9 117 11-135 139-264 (303)
66 cd07258 PpCmtC_C C-terminal do 99.8 1E-18 2.3E-23 107.7 12.9 104 19-135 1-113 (141)
67 cd06587 Glo_EDI_BRP_like This 99.8 1.9E-18 4.1E-23 101.4 12.8 108 20-133 1-112 (112)
68 cd08344 MhqB_like_N N-terminal 99.8 3E-18 6.6E-23 101.8 13.3 101 17-136 2-109 (112)
69 cd07262 Glo_EDI_BRP_like_19 Th 99.8 2.9E-18 6.3E-23 103.3 13.1 108 18-135 1-123 (123)
70 cd07251 Glo_EDI_BRP_like_10 Th 99.8 4.7E-18 1E-22 101.9 13.0 110 21-135 2-120 (121)
71 TIGR03213 23dbph12diox 2,3-dih 99.8 4.1E-18 8.9E-23 116.4 13.8 108 15-136 1-118 (286)
72 TIGR02295 HpaD 3,4-dihydroxyph 99.8 6.4E-18 1.4E-22 115.8 14.1 115 11-136 130-256 (294)
73 TIGR03213 23dbph12diox 2,3-dih 99.8 7.4E-18 1.6E-22 115.1 13.9 113 15-135 140-262 (286)
74 TIGR02295 HpaD 3,4-dihydroxyph 99.8 9.5E-18 2.1E-22 114.9 13.7 107 15-136 2-115 (294)
75 TIGR03211 catechol_2_3 catecho 99.8 3.2E-17 7E-22 112.8 13.8 105 15-136 2-118 (303)
76 PF13669 Glyoxalase_4: Glyoxal 99.7 2.1E-17 4.6E-22 97.8 8.3 94 19-114 1-96 (109)
77 COG2514 Predicted ring-cleavag 99.7 2E-16 4.3E-21 104.1 13.4 114 16-138 9-128 (265)
78 KOG2944 Glyoxalase [Carbohydra 99.7 3.8E-16 8.1E-21 94.8 12.4 122 14-136 19-168 (170)
79 PLN02300 lactoylglutathione ly 99.7 3.8E-16 8.1E-21 106.8 14.1 119 15-137 152-279 (286)
80 COG3324 Predicted enzyme relat 99.7 3.8E-15 8.2E-20 88.9 13.2 115 15-137 7-126 (127)
81 COG3607 Predicted lactoylgluta 99.6 8E-15 1.7E-19 85.7 10.5 118 17-138 3-129 (133)
82 COG3565 Predicted dioxygenase 99.6 7.9E-14 1.7E-18 80.4 11.4 113 17-135 4-128 (138)
83 cd07250 HPPD_C_like C-terminal 99.5 9.9E-14 2.2E-18 89.6 9.7 98 16-113 2-110 (191)
84 cd06588 PhnB_like Escherichia 99.5 1.6E-12 3.4E-17 79.0 13.4 107 22-134 4-128 (128)
85 COG2764 PhnB Uncharacterized p 99.5 1.6E-11 3.4E-16 74.5 14.3 113 22-137 5-132 (136)
86 TIGR01263 4HPPD 4-hydroxypheny 99.4 3.9E-12 8.4E-17 89.4 10.8 105 10-114 151-266 (353)
87 TIGR01263 4HPPD 4-hydroxypheny 99.4 1.9E-11 4.2E-16 85.9 13.4 98 16-114 1-100 (353)
88 COG0346 GloA Lactoylglutathion 99.4 4.3E-12 9.4E-17 76.4 7.1 120 16-135 1-138 (138)
89 PRK01037 trmD tRNA (guanine-N( 99.3 1.1E-10 2.3E-15 80.3 10.3 103 17-136 247-354 (357)
90 PLN02875 4-hydroxyphenylpyruva 99.2 7.9E-11 1.7E-15 83.2 9.0 102 12-113 175-293 (398)
91 KOG2943 Predicted glyoxalase [ 99.2 2.9E-10 6.3E-15 74.0 8.5 118 16-137 16-144 (299)
92 PF13468 Glyoxalase_3: Glyoxal 99.1 2.9E-10 6.2E-15 72.6 5.4 93 18-110 1-101 (175)
93 KOG2943 Predicted glyoxalase [ 99.1 2E-09 4.4E-14 70.1 9.0 109 17-135 149-269 (299)
94 PRK10148 hypothetical protein; 99.0 8E-08 1.7E-12 59.6 14.9 109 22-137 6-142 (147)
95 COG2514 Predicted ring-cleavag 99.0 6.4E-09 1.4E-13 69.1 9.6 97 16-134 167-264 (265)
96 KOG0638 4-hydroxyphenylpyruvat 98.8 3.3E-08 7.3E-13 67.0 7.3 105 10-114 10-119 (381)
97 PF14696 Glyoxalase_5: Hydroxy 98.7 9.3E-08 2E-12 58.4 7.8 121 11-136 3-126 (139)
98 PF14506 CppA_N: CppA N-termin 98.7 1.5E-06 3.2E-11 51.1 12.0 108 20-136 3-114 (125)
99 PLN02875 4-hydroxyphenylpyruva 98.6 1.7E-06 3.8E-11 61.6 12.6 118 18-135 1-150 (398)
100 COG3185 4-hydroxyphenylpyruvat 98.5 2.7E-07 5.9E-12 63.5 6.1 101 13-113 163-272 (363)
101 COG3185 4-hydroxyphenylpyruvat 98.0 0.00016 3.5E-09 50.2 10.4 114 10-128 15-142 (363)
102 PF15067 FAM124: FAM124 family 97.9 0.00025 5.5E-09 46.6 8.8 111 6-132 108-234 (236)
103 PF06983 3-dmu-9_3-mt: 3-demet 97.9 0.0015 3.3E-08 38.9 12.8 96 26-134 11-116 (116)
104 KOG0638 4-hydroxyphenylpyruvat 97.8 1.9E-05 4.2E-10 54.0 3.1 103 11-114 172-290 (381)
105 PF13669 Glyoxalase_4: Glyoxal 97.3 0.0015 3.3E-08 38.3 6.0 50 88-137 1-56 (109)
106 PF14507 CppA_C: CppA C-termin 96.9 0.0039 8.5E-08 36.0 5.0 90 18-131 6-98 (101)
107 KOG2944 Glyoxalase [Carbohydra 96.3 0.038 8.1E-07 34.5 6.6 52 16-69 114-166 (170)
108 cd08353 Glo_EDI_BRP_like_7 Thi 95.9 0.066 1.4E-06 32.6 6.6 54 16-70 86-140 (142)
109 cd08342 HPPD_N_like N-terminal 95.3 0.25 5.3E-06 30.0 7.6 58 16-74 68-126 (136)
110 PLN02367 lactoylglutathione ly 95.2 0.21 4.5E-06 33.5 7.4 56 16-73 168-224 (233)
111 PF13468 Glyoxalase_3: Glyoxal 94.7 0.054 1.2E-06 34.5 3.7 50 87-137 1-55 (175)
112 cd07249 MMCE Methylmalonyl-CoA 94.7 0.3 6.4E-06 28.7 6.8 31 16-47 71-101 (128)
113 cd08347 PcpA_C_like C-terminal 94.4 0.38 8.3E-06 30.1 7.0 51 86-136 1-53 (157)
114 cd08352 Glo_EDI_BRP_like_1 Thi 94.4 0.54 1.2E-05 27.4 7.5 50 86-135 3-57 (125)
115 PRK11478 putative lyase; Provi 94.4 0.51 1.1E-05 27.9 7.3 29 16-45 74-102 (129)
116 PF13670 PepSY_2: Peptidase pr 94.0 0.33 7.1E-06 27.0 5.4 40 96-135 30-72 (83)
117 TIGR03645 glyox_marine lactoyl 93.8 0.61 1.3E-05 29.3 7.0 53 85-137 3-78 (162)
118 cd07242 Glo_EDI_BRP_like_6 Thi 93.6 0.67 1.4E-05 27.4 6.7 50 86-136 1-54 (128)
119 cd08346 PcpA_N_like N-terminal 93.6 0.82 1.8E-05 26.7 7.1 51 86-136 1-60 (126)
120 cd07245 Glo_EDI_BRP_like_9 Thi 93.3 0.68 1.5E-05 26.3 6.3 50 87-136 1-52 (114)
121 PLN03042 Lactoylglutathione ly 93.2 0.78 1.7E-05 29.7 6.9 56 16-73 120-176 (185)
122 cd07235 MRD Mitomycin C resist 93.2 0.66 1.4E-05 27.2 6.2 46 87-132 1-46 (122)
123 COG3865 Uncharacterized protei 93.0 1.3 2.9E-05 27.4 12.2 101 23-134 11-122 (151)
124 cd06587 Glo_EDI_BRP_like This 92.6 0.86 1.9E-05 25.5 6.0 47 89-136 1-50 (112)
125 PF06185 YecM: YecM protein; 92.5 1.9 4.1E-05 27.9 8.0 77 16-95 33-114 (185)
126 cd08348 BphC2-C3-RGP6_C_like T 92.3 1.5 3.2E-05 26.1 7.3 50 87-136 2-54 (134)
127 cd07241 Glo_EDI_BRP_like_3 Thi 92.2 1.4 3E-05 25.7 7.0 49 87-135 2-55 (125)
128 PRK10291 glyoxalase I; Provisi 91.5 1.9 4.1E-05 25.6 7.9 56 17-73 65-122 (129)
129 cd07255 Glo_EDI_BRP_like_12 Th 91.0 2 4.4E-05 25.1 6.6 47 87-135 3-51 (125)
130 TIGR03081 metmalonyl_epim meth 90.7 1.9 4.2E-05 25.2 6.3 30 16-46 71-100 (128)
131 cd07252 BphC1-RGP6_N_like N-te 90.4 2.4 5.1E-05 24.9 6.8 48 86-134 2-51 (120)
132 cd07263 Glo_EDI_BRP_like_16 Th 89.6 2.6 5.6E-05 24.1 6.2 31 16-47 66-96 (119)
133 cd07250 HPPD_C_like C-terminal 89.6 1.8 3.9E-05 28.1 5.8 51 86-136 3-63 (191)
134 TIGR00068 glyox_I lactoylgluta 89.0 3.7 7.9E-05 25.2 6.7 56 16-72 85-142 (150)
135 cd08344 MhqB_like_N N-terminal 88.9 2.9 6.3E-05 24.1 5.9 28 86-113 2-29 (112)
136 PRK11700 hypothetical protein; 88.6 4.9 0.00011 26.1 9.2 76 15-95 37-119 (187)
137 PF12681 Glyoxalase_2: Glyoxal 88.5 2.7 5.8E-05 23.8 5.5 32 14-46 53-84 (108)
138 cd07268 Glo_EDI_BRP_like_4 Thi 88.3 4.5 9.7E-05 25.2 11.1 73 18-95 2-81 (149)
139 cd07262 Glo_EDI_BRP_like_19 Th 88.1 3.6 7.9E-05 24.0 6.4 48 87-135 1-53 (123)
140 PF00903 Glyoxalase: Glyoxalas 88.0 2.7 5.9E-05 24.3 5.5 28 87-114 2-30 (128)
141 cd07233 Glyoxalase_I Glyoxalas 88.0 3.6 7.8E-05 23.8 6.7 30 17-47 70-99 (121)
142 cd07253 Glo_EDI_BRP_like_2 Thi 87.9 3.7 7.9E-05 23.7 6.3 29 86-114 3-32 (125)
143 cd08359 Glo_EDI_BRP_like_22 Th 86.7 4.4 9.6E-05 23.4 6.6 26 20-46 69-94 (119)
144 cd07240 ED_TypeI_classII_N N-t 86.6 4.3 9.4E-05 23.2 6.2 38 87-126 3-41 (117)
145 cd08360 MhqB_like_C C-terminal 85.9 5.6 0.00012 23.8 6.8 50 85-135 2-55 (134)
146 cd04883 ACT_AcuB C-terminal AC 84.9 3.3 7.1E-05 21.8 4.3 27 88-114 43-71 (72)
147 cd08363 FosB FosB, a fosfomyci 83.0 7.8 0.00017 23.2 6.5 27 87-113 1-28 (131)
148 cd09012 Glo_EDI_BRP_like_24 Th 82.7 7.5 0.00016 22.7 6.5 26 88-113 2-27 (124)
149 cd07257 THT_oxygenase_C The C- 82.4 9.3 0.0002 23.6 7.0 55 16-70 66-124 (153)
150 cd04882 ACT_Bt0572_2 C-termina 82.1 4.4 9.5E-05 20.7 4.0 25 87-111 40-64 (65)
151 cd07238 Glo_EDI_BRP_like_5 Thi 80.9 8.2 0.00018 22.0 7.4 28 18-46 58-85 (112)
152 cd07265 2_3_CTD_N N-terminal d 80.2 9.3 0.0002 22.2 6.3 29 86-114 4-33 (122)
153 cd08361 PpCmtC_N N-terminal do 80.1 9.8 0.00021 22.4 6.3 47 86-134 6-54 (124)
154 PF07063 DUF1338: Domain of un 80.1 2.5 5.3E-05 29.7 3.1 30 83-112 181-216 (302)
155 PRK04101 fosfomycin resistance 79.9 11 0.00023 22.8 6.6 29 16-45 62-92 (139)
156 cd07239 BphC5-RK37_C_like C-te 79.2 12 0.00026 22.9 6.4 27 86-112 4-31 (144)
157 PF02208 Sorb: Sorbin homologo 79.0 0.78 1.7E-05 22.3 0.3 27 14-40 8-34 (47)
158 cd07247 SgaA_N_like N-terminal 78.2 10 0.00022 21.6 7.3 30 17-47 61-90 (114)
159 cd07237 BphC1-RGP6_C_like C-te 77.2 14 0.00031 22.8 8.0 29 85-113 8-37 (154)
160 cd07267 THT_Oxygenase_N N-term 77.2 11 0.00025 21.6 7.1 29 16-45 56-84 (113)
161 PF14091 DUF4269: Domain of un 77.1 3.9 8.5E-05 25.6 3.1 88 21-114 37-134 (152)
162 cd04895 ACT_ACR_1 ACT domain-c 77.0 7.1 0.00015 21.2 3.7 35 97-131 15-55 (72)
163 cd07266 HPCD_N_class_II N-term 76.3 12 0.00027 21.5 6.1 29 86-114 4-33 (121)
164 cd08351 ChaP_like ChaP, an enz 74.6 15 0.00031 21.5 6.5 48 86-135 4-52 (123)
165 cd08345 Fosfomycin_RP Fosfomyc 73.9 14 0.0003 21.0 5.5 29 16-45 54-84 (113)
166 cd04906 ACT_ThrD-I_1 First of 73.7 9.8 0.00021 21.1 4.0 27 88-114 42-72 (85)
167 cd07243 2_3_CTD_C C-terminal d 73.4 18 0.00039 22.0 6.6 55 16-70 66-124 (143)
168 cd08362 BphC5-RrK37_N_like N-t 72.3 16 0.00035 21.0 5.7 28 86-113 3-31 (120)
169 cd07264 Glo_EDI_BRP_like_15 Th 72.1 17 0.00036 21.0 6.9 27 19-46 73-99 (125)
170 cd07244 FosA FosA, a Fosfomyci 71.4 18 0.00038 21.1 5.3 28 86-113 1-29 (121)
171 cd08343 ED_TypeI_classII_C C-t 71.3 19 0.00041 21.3 6.0 26 88-113 1-27 (131)
172 cd08349 BLMA_like Bleomycin bi 69.9 17 0.00038 20.4 6.6 26 16-42 57-82 (112)
173 COG1437 CyaB Adenylate cyclase 69.4 28 0.00061 22.6 9.2 78 18-111 78-162 (178)
174 COG4747 ACT domain-containing 69.1 6.5 0.00014 23.6 2.5 89 18-114 42-136 (142)
175 cd08364 FosX FosX, a fosfomyci 67.7 23 0.00051 21.0 6.6 28 17-45 66-95 (131)
176 KOG4657 Uncharacterized conser 67.6 5.2 0.00011 26.8 2.1 23 26-48 145-167 (246)
177 cd09013 BphC-JF8_N_like N-term 67.1 22 0.00048 20.6 6.0 28 16-43 61-90 (121)
178 cd07246 Glo_EDI_BRP_like_8 Thi 66.9 22 0.00047 20.3 7.1 30 17-47 68-97 (122)
179 cd08358 Glo_EDI_BRP_like_21 Th 66.7 26 0.00056 21.2 7.3 27 87-113 3-30 (127)
180 cd07258 PpCmtC_C C-terminal do 64.5 30 0.00065 21.1 7.0 56 15-70 54-113 (141)
181 cd07256 HPCD_C_class_II C-term 64.1 15 0.00034 22.8 3.8 27 86-112 3-30 (161)
182 PF07494 Reg_prop: Two compone 62.4 11 0.00024 15.4 2.1 12 120-131 8-19 (24)
183 cd04885 ACT_ThrD-I Tandem C-te 61.3 16 0.00035 19.1 3.1 26 87-112 39-67 (68)
184 COG3349 Uncharacterized conser 59.9 20 0.00044 27.1 4.2 33 101-133 16-52 (485)
185 cd07261 Glo_EDI_BRP_like_11 Th 59.6 31 0.00066 19.6 6.3 30 16-46 58-90 (114)
186 PF09142 TruB_C: tRNA Pseudour 59.0 23 0.00051 18.0 3.6 41 96-137 5-45 (56)
187 cd08354 Glo_EDI_BRP_like_13 Th 58.6 33 0.00071 19.6 7.5 47 88-135 2-49 (122)
188 TIGR00318 cyaB adenylyl cyclas 58.5 23 0.00051 22.6 3.9 36 91-127 7-42 (174)
189 PF12687 DUF3801: Protein of u 58.1 33 0.00072 22.7 4.6 44 84-127 31-79 (204)
190 PRK06724 hypothetical protein; 58.0 38 0.00083 20.2 6.9 29 16-45 62-93 (128)
191 PF13176 TPR_7: Tetratricopept 57.7 12 0.00025 16.8 1.8 19 23-41 10-28 (36)
192 PF03975 CheD: CheD chemotacti 57.1 29 0.00062 20.5 3.9 37 95-131 64-103 (114)
193 cd04908 ACT_Bt0572_1 N-termina 56.4 27 0.00059 18.0 3.9 24 89-112 42-65 (66)
194 PRK13498 chemoreceptor glutami 56.3 35 0.00075 21.9 4.3 38 94-131 114-154 (167)
195 PRK13490 chemoreceptor glutami 56.2 35 0.00075 21.7 4.3 37 95-131 112-151 (162)
196 PRK13495 chemoreceptor glutami 56.1 35 0.00077 21.6 4.3 37 95-131 105-144 (159)
197 PRK06704 RNA polymerase factor 54.5 9.5 0.00021 25.6 1.7 42 91-134 183-226 (228)
198 PF10706 Aminoglyc_resit: Amin 53.9 48 0.001 21.3 4.6 40 90-132 47-86 (174)
199 PRK13494 chemoreceptor glutami 53.8 41 0.00088 21.5 4.3 37 95-131 114-153 (163)
200 PTZ00330 acetyltransferase; Pr 52.2 23 0.00051 21.2 3.1 26 17-45 115-140 (147)
201 cd09011 Glo_EDI_BRP_like_23 Th 51.9 45 0.00098 19.2 6.6 28 17-45 64-92 (120)
202 PF08445 FR47: FR47-like prote 50.6 34 0.00074 18.9 3.4 22 23-45 60-81 (86)
203 PRK13488 chemoreceptor glutami 50.5 49 0.0011 20.9 4.3 37 94-130 106-145 (157)
204 PRK03094 hypothetical protein; 50.3 33 0.00071 19.1 3.1 38 93-130 5-48 (80)
205 PF00585 Thr_dehydrat_C: C-ter 50.1 23 0.00049 20.1 2.6 30 85-114 49-81 (91)
206 PRK13491 chemoreceptor glutami 49.3 52 0.0011 21.8 4.4 37 95-131 115-154 (199)
207 PF00379 Chitin_bind_4: Insect 48.2 31 0.00066 17.1 2.6 15 120-134 30-44 (52)
208 PRK13497 chemoreceptor glutami 47.7 59 0.0013 21.2 4.4 38 94-131 111-151 (184)
209 PRK13493 chemoreceptor glutami 46.8 56 0.0012 21.9 4.3 37 95-131 139-178 (213)
210 COG5397 Uncharacterized conser 46.7 42 0.00092 23.5 3.8 48 89-136 160-211 (349)
211 PRK13487 chemoreceptor glutami 45.7 62 0.0013 21.4 4.4 38 94-131 126-166 (201)
212 COG3254 Uncharacterized conser 45.6 62 0.0014 19.0 4.6 33 98-137 27-59 (105)
213 PF00583 Acetyltransf_1: Acety 44.8 25 0.00053 18.6 2.2 26 16-42 57-83 (83)
214 COG3102 Uncharacterized protei 44.1 87 0.0019 20.2 8.4 83 13-100 35-125 (185)
215 COG0077 PheA Prephenate dehydr 43.8 1.1E+02 0.0024 21.4 7.5 46 87-132 194-249 (279)
216 smart00459 Sorb Sorbin homolog 43.3 16 0.00034 18.2 1.1 15 26-40 23-37 (50)
217 cd08355 Glo_EDI_BRP_like_14 Th 43.0 65 0.0014 18.5 7.0 29 17-46 68-96 (122)
218 cd04909 ACT_PDH-BS C-terminal 42.1 31 0.00068 17.8 2.3 21 90-110 45-68 (69)
219 PF02952 Fucose_iso_C: L-fucos 41.9 49 0.0011 20.2 3.4 27 18-44 113-139 (142)
220 COG0456 RimI Acetyltransferase 41.5 38 0.00082 21.0 2.9 29 19-48 127-156 (177)
221 PF14696 Glyoxalase_5: Hydroxy 41.5 86 0.0019 19.4 6.6 55 16-72 72-127 (139)
222 COG1791 Uncharacterized conser 41.2 88 0.0019 20.3 4.3 42 96-137 79-124 (181)
223 PRK10146 aminoalkylphosphonic 41.1 33 0.00071 20.4 2.5 29 16-45 108-137 (144)
224 KOG2741 Dimeric dihydrodiol de 40.5 13 0.00028 26.7 0.7 25 90-114 105-129 (351)
225 PRK13489 chemoreceptor glutami 40.5 82 0.0018 21.5 4.4 37 94-130 124-163 (233)
226 PF14133 DUF4300: Domain of un 40.2 1.1E+02 0.0023 21.1 5.0 37 97-133 150-186 (250)
227 PRK10140 putative acetyltransf 39.8 51 0.0011 20.0 3.3 31 17-48 112-143 (162)
228 KOG2267 Eukaryotic-type DNA pr 39.6 28 0.0006 25.6 2.2 24 88-111 384-407 (475)
229 PF13508 Acetyltransf_7: Acety 39.6 25 0.00054 18.6 1.7 20 21-43 60-79 (79)
230 cd07890 CYTH-like_AC_IV-like A 39.4 55 0.0012 20.6 3.4 35 91-126 5-39 (169)
231 COG3603 Uncharacterized conser 38.9 43 0.00093 20.2 2.6 25 88-112 103-127 (128)
232 COG1225 Bcp Peroxiredoxin [Pos 38.8 1E+02 0.0022 19.6 6.1 49 86-134 64-136 (157)
233 PF03432 Relaxase: Relaxase/Mo 38.8 82 0.0018 20.9 4.4 36 93-128 183-218 (242)
234 cd04907 ACT_ThrD-I_2 Second of 38.6 70 0.0015 17.6 3.5 28 87-114 42-71 (81)
235 cd04886 ACT_ThrD-II-like C-ter 38.6 56 0.0012 16.5 4.1 25 88-112 45-72 (73)
236 COG1871 CheD Chemotaxis protei 38.4 1.1E+02 0.0023 19.6 4.7 37 94-130 113-152 (164)
237 PF00578 AhpC-TSA: AhpC/TSA fa 36.9 69 0.0015 18.4 3.4 46 86-131 59-122 (124)
238 PRK14707 hypothetical protein; 36.8 64 0.0014 29.5 4.1 39 96-134 2357-2404(2710)
239 PF07063 DUF1338: Domain of un 36.7 51 0.0011 23.4 3.1 27 17-44 184-216 (302)
240 PF04761 Phage_Treg: Lactococc 36.3 36 0.00077 16.9 1.7 13 28-40 15-27 (57)
241 PRK10975 TDP-fucosamine acetyl 36.2 56 0.0012 20.9 3.1 29 16-45 158-187 (194)
242 PF13420 Acetyltransf_4: Acety 36.0 56 0.0012 19.7 3.0 31 17-48 110-141 (155)
243 smart00671 SEL1 Sel1-like repe 35.9 39 0.00085 14.5 1.8 14 25-38 18-31 (36)
244 TIGR02382 wecD_rffC TDP-D-fuco 35.8 48 0.001 21.2 2.8 29 16-45 155-184 (191)
245 cd04897 ACT_ACR_3 ACT domain-c 35.8 78 0.0017 17.3 4.9 35 97-131 15-55 (75)
246 PRK09437 bcp thioredoxin-depen 35.3 1.1E+02 0.0023 18.7 5.9 50 86-135 64-137 (154)
247 PF12142 PPO1_DWL: Polyphenol 35.1 59 0.0013 16.6 2.4 16 119-134 10-25 (54)
248 PF10023 DUF2265: Predicted am 34.2 1.2E+02 0.0027 21.9 4.7 93 27-126 54-152 (337)
249 PF03698 UPF0180: Uncharacteri 34.2 88 0.0019 17.4 5.0 38 93-130 5-48 (80)
250 PRK10314 putative acyltransfer 34.1 57 0.0012 20.2 2.8 17 29-46 118-134 (153)
251 PF14044 NETI: NETI protein 33.9 69 0.0015 16.5 2.5 22 92-113 2-26 (57)
252 PF13721 SecD-TM1: SecD export 33.7 52 0.0011 19.1 2.4 34 94-127 45-80 (101)
253 PRK10629 EnvZ/OmpR regulon mod 33.6 55 0.0012 19.9 2.6 33 95-127 50-84 (127)
254 PF05271 Tobravirus_2B: Tobrav 33.2 26 0.00055 20.4 1.0 26 12-40 60-85 (116)
255 cd01205 WASP WASP-type EVH1 do 33.1 79 0.0017 18.6 3.1 21 19-39 82-102 (105)
256 KOG1494 NAD-dependent malate d 33.0 1.2E+02 0.0027 21.6 4.4 75 21-114 171-245 (345)
257 PF08285 DPM3: Dolichol-phosph 31.7 32 0.0007 19.6 1.3 15 96-110 76-90 (91)
258 PF00515 TPR_1: Tetratricopept 31.5 52 0.0011 13.9 1.8 19 24-42 13-31 (34)
259 PF12512 DUF3717: Protein of u 30.5 21 0.00045 19.4 0.3 15 23-37 4-18 (71)
260 PF11633 SUD-M: Single-strande 30.0 1.4E+02 0.0031 18.5 4.5 36 89-124 37-74 (142)
261 PF11823 DUF3343: Protein of u 29.6 96 0.0021 16.5 4.5 23 90-112 43-67 (73)
262 PF05593 RHS_repeat: RHS Repea 29.4 67 0.0015 14.6 3.3 22 115-136 13-34 (38)
263 PHA02503 putative transcriptio 29.3 55 0.0012 16.2 1.7 12 28-39 15-26 (57)
264 PF07411 DUF1508: Domain of un 29.0 77 0.0017 15.6 2.3 17 116-132 3-19 (49)
265 KOG1515 Arylacetamide deacetyl 28.7 1.1E+02 0.0023 22.1 3.7 30 98-127 286-317 (336)
266 PF01316 Arg_repressor: Argini 28.5 57 0.0012 17.6 1.8 20 94-113 19-38 (70)
267 PF07719 TPR_2: Tetratricopept 28.4 58 0.0013 13.6 1.8 19 23-41 12-30 (34)
268 PF13673 Acetyltransf_10: Acet 28.4 68 0.0015 18.1 2.4 21 20-41 97-117 (117)
269 PRK09491 rimI ribosomal-protei 27.9 1E+02 0.0022 18.4 3.2 29 17-46 96-125 (146)
270 PF00594 Gla: Vitamin K-depend 27.9 72 0.0015 15.2 1.9 14 27-40 29-42 (42)
271 TIGR03448 mycothiol_MshD mycot 27.8 88 0.0019 21.4 3.2 29 17-46 259-288 (292)
272 PRK10514 putative acetyltransf 27.7 89 0.0019 18.6 2.9 21 27-48 108-128 (145)
273 PF04800 ETC_C1_NDUFA4: ETC co 27.7 1.3E+02 0.0029 17.5 4.3 32 82-113 42-74 (101)
274 COG0189 RimK Glutathione synth 27.6 1.8E+02 0.0039 20.8 4.7 31 22-52 137-167 (318)
275 PF04659 Arch_fla_DE: Archaeal 27.5 58 0.0013 18.9 1.9 18 24-42 33-50 (99)
276 PHA00212 putative transcriptio 27.1 62 0.0013 16.4 1.7 12 28-39 17-28 (63)
277 PHA02097 hypothetical protein 26.8 72 0.0016 16.0 1.8 15 121-135 44-58 (59)
278 PF06923 GutM: Glucitol operon 26.7 1.4E+02 0.0031 17.5 5.4 41 95-136 24-70 (109)
279 TIGR01575 rimI ribosomal-prote 26.5 84 0.0018 18.0 2.6 31 17-48 87-118 (131)
280 PF13181 TPR_8: Tetratricopept 26.3 66 0.0014 13.5 1.9 17 25-41 14-30 (34)
281 cd00034 ChSh Chromo Shadow Dom 26.1 50 0.0011 16.7 1.3 17 25-41 37-53 (54)
282 COG1834 N-Dimethylarginine dim 26.0 1.4E+02 0.0031 20.8 3.8 32 96-127 39-73 (267)
283 PHA02754 hypothetical protein; 25.9 1.1E+02 0.0024 15.9 4.2 40 97-136 20-62 (67)
284 PRK10562 putative acetyltransf 25.9 1.6E+02 0.0034 17.6 5.0 26 21-47 100-126 (145)
285 TIGR01643 YD_repeat_2x YD repe 25.6 82 0.0018 14.3 3.4 21 115-135 13-33 (42)
286 smart00300 ChSh Chromo Shadow 25.3 56 0.0012 16.9 1.4 18 25-42 43-60 (61)
287 PRK11657 dsbG disulfide isomer 25.2 1.9E+02 0.0041 19.8 4.3 37 95-131 21-70 (251)
288 KOG2003 TPR repeat-containing 25.1 77 0.0017 24.2 2.5 26 18-43 496-521 (840)
289 PF08238 Sel1: Sel1 repeat; I 25.0 47 0.001 14.6 1.0 13 26-38 22-34 (39)
290 PHA02978 hypothetical protein; 25.0 89 0.0019 18.4 2.3 18 120-137 76-93 (135)
291 TIGR03585 PseH pseudaminic aci 25.0 1.3E+02 0.0028 18.1 3.3 31 17-48 109-140 (156)
292 COG2081 Predicted flavoprotein 24.4 2.5E+02 0.0055 21.0 4.9 35 97-131 114-154 (408)
293 PF07566 DUF1543: Domain of Un 24.1 56 0.0012 16.4 1.2 22 88-109 6-28 (52)
294 KOG1249 Predicted GTPases [Gen 24.0 80 0.0017 24.4 2.5 28 17-44 432-459 (572)
295 PF01483 P_proprotein: Proprot 24.0 1.4E+02 0.003 16.4 3.0 22 115-136 14-35 (87)
296 COG1389 DNA topoisomerase VI, 24.0 74 0.0016 24.2 2.2 17 118-134 205-221 (538)
297 PF14527 LAGLIDADG_WhiA: WhiA 23.8 1.5E+02 0.0033 16.8 4.0 40 88-127 22-65 (93)
298 PF09383 NIL: NIL domain; Int 23.8 92 0.002 16.5 2.2 26 87-112 45-74 (76)
299 TIGR03103 trio_acet_GNAT GNAT- 23.4 1.1E+02 0.0023 23.7 3.1 29 16-45 187-216 (547)
300 COG0504 PyrG CTP synthase (UTP 23.4 2.2E+02 0.0048 22.0 4.6 28 21-48 376-403 (533)
301 PF11746 DUF3303: Protein of u 23.1 1.6E+02 0.0034 16.7 4.8 39 99-137 19-58 (91)
302 TIGR03828 pfkB 1-phosphofructo 22.9 2.6E+02 0.0056 19.2 5.0 37 98-134 64-103 (304)
303 PRK09831 putative acyltransfer 22.8 97 0.0021 18.7 2.4 19 29-48 110-128 (147)
304 PF02630 SCO1-SenC: SCO1/SenC; 22.8 82 0.0018 20.0 2.1 17 119-135 156-172 (174)
305 PF07045 DUF1330: Protein of u 22.7 1E+02 0.0022 16.0 2.1 17 21-37 42-58 (65)
306 PRK15130 spermidine N1-acetylt 22.6 1.5E+02 0.0033 18.6 3.4 31 17-48 116-147 (186)
307 PF15590 Imm15: Immunity prote 22.5 42 0.00091 18.0 0.6 18 118-135 24-42 (69)
308 PLN00139 hypothetical protein; 22.5 1.4E+02 0.0031 21.3 3.4 28 91-118 194-221 (320)
309 PF11080 DUF2622: Protein of u 22.4 1.7E+02 0.0037 16.9 3.5 17 96-112 22-38 (96)
310 TIGR02406 ectoine_EctA L-2,4-d 22.3 1.1E+02 0.0024 18.8 2.7 27 18-45 100-127 (157)
311 PF13756 Stimulus_sens_1: Stim 22.3 82 0.0018 18.6 1.9 14 118-131 18-31 (112)
312 COG3042 Hlx Putative hemolysin 22.3 1.6E+02 0.0035 16.6 3.5 33 100-132 39-73 (85)
313 PF12221 HflK_N: Bacterial mem 22.2 80 0.0017 15.1 1.5 13 94-106 20-32 (42)
314 PF14907 NTP_transf_5: Unchara 22.2 2.5E+02 0.0054 18.7 5.7 45 90-135 97-143 (249)
315 PRK04280 arginine repressor; P 22.2 1E+02 0.0023 19.2 2.4 20 94-113 18-37 (148)
316 TIGR03168 1-PFK hexose kinase, 21.6 2.8E+02 0.0061 19.1 5.0 38 98-135 64-104 (303)
317 cd07963 Anticodon_Ia_Cys Antic 21.5 1.5E+02 0.0032 18.4 3.1 21 97-117 131-151 (156)
318 COG1654 BirA Biotin operon rep 21.5 1.4E+02 0.0029 16.6 2.5 22 95-116 34-55 (79)
319 KOG3235 Subunit of the major N 21.2 1.7E+02 0.0036 18.9 3.1 31 18-48 106-137 (193)
320 PF07901 DUF1672: Protein of u 20.8 2.5E+02 0.0053 19.8 4.1 35 29-63 40-74 (277)
321 TIGR02540 gpx7 putative glutat 20.8 1.3E+02 0.0028 18.4 2.7 16 120-135 122-137 (153)
322 COG5470 Uncharacterized conser 20.6 1.2E+02 0.0026 17.6 2.2 20 18-37 53-72 (96)
323 PF13174 TPR_6: Tetratricopept 20.5 77 0.0017 13.0 1.3 14 26-39 14-27 (33)
324 COG4017 Uncharacterized protei 20.5 70 0.0015 21.3 1.4 45 88-132 171-219 (254)
325 cd03012 TlpA_like_DipZ_like Tl 20.2 2E+02 0.0043 16.8 6.2 40 96-135 72-123 (126)
326 KOG4841 Dolichol-phosphate man 20.1 71 0.0015 18.0 1.2 15 96-110 80-94 (95)
327 PRK03624 putative acetyltransf 20.1 1.3E+02 0.0027 17.4 2.5 28 17-45 101-129 (140)
328 smart00028 TPR Tetratricopepti 20.1 76 0.0017 12.0 1.5 17 25-41 14-30 (34)
No 1
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.92 E-value=1.3e-23 Score=129.79 Aligned_cols=121 Identities=21% Similarity=0.351 Sum_probs=90.2
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCC-----------CCCeeEEEEEe--CCeEEEEeecCCCCCCCC--
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHD-----------KLPYRGAWLWV--GAEMIHLMELPNPDPLSG-- 79 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~-- 79 (138)
+.+++||+|.|+|++++++||++ |||+........ ......+++.. ++..++|+....+.....
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 46899999999999999999998 999876543211 11223344543 456888887544322211
Q ss_pred -CCCCCCCCceEEEEECCHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEee
Q 032565 80 -RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 80 -~~~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
....+.+..|+||.|+|+++++++|+++|+++..+ .++.+.+|++||||+.|||+|.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 12334567899999999999999999999998754 3467889999999999999984
No 2
>PRK11478 putative lyase; Provisional
Probab=99.92 E-value=3e-23 Score=126.07 Aligned_cols=122 Identities=23% Similarity=0.358 Sum_probs=87.4
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEe-CCeEEEEeecCCCCCCCCCCCCCCCCceEE
Q 032565 13 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 91 (138)
Q Consensus 13 ~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 91 (138)
+.+.+++||+|.|+|++++++||+++|||++...........-...+.. ++..++++..+.+...+.. ....+..|++
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~-~~~~g~~hi~ 80 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSR-PEACGLRHLA 80 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCC-CCCCceeEEE
Confidence 4567899999999999999999999999998643221111101112323 4456777764433221111 1234578999
Q ss_pred EEECCHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEe
Q 032565 92 IAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 92 ~~v~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~ 135 (138)
|.|+|++++.++|+++|+++... .++.+.+||+||||+.||++|
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 99999999999999999998643 346788999999999999987
No 3
>PLN02367 lactoylglutathione lyase
Probab=99.91 E-value=8.8e-23 Score=133.20 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=92.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC-------------------CeEEEEeecCCCCC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-------------------AEMIHLMELPNPDP 76 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~~ 76 (138)
-.++|++|.|+|++++++||+++|||++..+.......+..+|+..+ +..++|....+...
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 46999999999999999999999999998877666555666776431 24678875444331
Q ss_pred --CCC-CC-C--CCCCCceEEEEECCHHHHHHHHHHCCCeEEecC---CCccEEEEECCCCCeEEEEeec
Q 032565 77 --LSG-RP-E--HGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 77 --~~~-~~-~--~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~---~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
... .. . ...+..|++|.|+|+++++++|++.|+++...+ ...+.++++||||++|||+|..
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 111 11 1 125789999999999999999999999987542 2245789999999999999865
No 4
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.91 E-value=1.7e-22 Score=129.08 Aligned_cols=122 Identities=17% Similarity=0.224 Sum_probs=90.0
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEe-------------------CCeEEEEeecCCCCC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-------------------GAEMIHLMELPNPDP 76 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~ 76 (138)
.++.|++|.|+|+++|++||+++|||++..+..........+++.. ++..++|+.......
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 4799999999999999999999999998877544443344555432 234788876443222
Q ss_pred CC--C-C---CCCCCCCceEEEEECCHHHHHHHHHHCCCeEEecC---CCccEEEEECCCCCeEEEEeec
Q 032565 77 LS--G-R---PEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 77 ~~--~-~---~~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~---~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
.+ . . ...+.++.|++|.|+|+++++++|+++|+++...+ .+.+.+|++||||+.|||++..
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 11 0 1 11235789999999999999999999999987542 1345678899999999999864
No 5
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.91 E-value=2e-22 Score=121.43 Aligned_cols=119 Identities=26% Similarity=0.413 Sum_probs=86.3
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEe-CCeEEEEeecCCCCCCCCCCCCCCCCceEEEEE
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 94 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 94 (138)
.+++||+|.|+|++++.+||+++|||+............-...+.. ++..++++........... ....+..|++|.|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~~~g~~h~~~~v 80 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSY-PEACGLRHLAFSV 80 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCC-CcCCCceEEEEEe
Confidence 5799999999999999999999999998764322221111122333 4557777655433221111 1335678999999
Q ss_pred CCHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEe
Q 032565 95 RDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+|++++.++|+++|+++... ..+.+.+|++||+|++|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 81 EDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 99999999999999987643 345678999999999999975
No 6
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.90 E-value=1.7e-22 Score=121.87 Aligned_cols=117 Identities=23% Similarity=0.317 Sum_probs=84.4
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC-CeEEEEeecCCCCCCCCCCCCCCCCceEEEEEC
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 95 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~ 95 (138)
+++|++|.|+|++++++||+++|||+..........+....|+..+ +..++++..+...... ......+..|++|.|+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~hi~f~v~ 79 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NEGERTGWAHLAFSVG 79 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-ccCCCCceEEEEEECC
Confidence 4789999999999999999999999976543222223345566663 4578887643322111 1223356789999996
Q ss_pred ---CHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEE
Q 032565 96 ---DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 96 ---d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~ 134 (138)
++++++++|+++|+++... ..+.+.++++|||||.|||.
T Consensus 80 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 80 SKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 5899999999999988753 33455678999999999983
No 7
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.90 E-value=1.4e-22 Score=124.47 Aligned_cols=118 Identities=12% Similarity=0.043 Sum_probs=88.0
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCC--CCCCCCCCceEEEEEC
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAIR 95 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~~~v~ 95 (138)
++|+.|.|+|++++++||+++|||+......... ....++..++..+.+........... ....+.+..|++|.|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~ 78 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVD 78 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeC
Confidence 5899999999999999999999999877544221 23344555666666654332221100 0123456789999999
Q ss_pred CHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEeec
Q 032565 96 DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 96 d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
|+++++++|+++|+++..+ +++.+.++++||||++|||++.+
T Consensus 79 Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~ 124 (136)
T cd08342 79 DAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRK 124 (136)
T ss_pred CHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecC
Confidence 9999999999999998643 45668999999999999999864
No 8
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.90 E-value=4e-22 Score=125.73 Aligned_cols=122 Identities=22% Similarity=0.270 Sum_probs=88.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccC----CC--------------CCCCeeEEEEEeC-CeEEEEeecCCCCC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEAR----PH--------------DKLPYRGAWLWVG-AEMIHLMELPNPDP 76 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~----~~--------------~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 76 (138)
++++||+|.|+|+++|++||+++|||++.... .. .......+++..+ +..++++....+..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 57999999999999999999999999875321 10 0111345566654 45788988765433
Q ss_pred CCCCC-CCCCCCceEEEEECCHHHHHHHHHHCCCeEEec--------CCCccEEEEECCCCCeEEEEeec
Q 032565 77 LSGRP-EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS--------KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 77 ~~~~~-~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~--------~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
+...+ ..+.+..|++|.|+|++++.++|+++|++.... ..+.+.+|++|||||.|||++..
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 22111 234678999999999999999999999865322 11347899999999999999864
No 9
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.90 E-value=3.4e-22 Score=123.12 Aligned_cols=113 Identities=23% Similarity=0.356 Sum_probs=87.4
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEE
Q 032565 14 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 93 (138)
Q Consensus 14 ~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 93 (138)
++.+++|+.|.|+|++++++||+++||+++..... ..+++..++..+.+...+... ......+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g~~l~l~~~~~~~----~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNGLWIALNEEKDIP----RNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCCeEEEeeccCCCC----CccCCCCeeEEEEE
Confidence 46789999999999999999999999999876422 346677777766664322111 11123456799999
Q ss_pred EC--CHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEee
Q 032565 94 IR--DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 94 v~--d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
++ |++++.++|+++|+++... ..+++.+|++|||||+||+.+.
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 98 9999999999999987543 3477999999999999999864
No 10
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.90 E-value=3.3e-22 Score=122.03 Aligned_cols=115 Identities=17% Similarity=0.273 Sum_probs=84.7
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCC-eeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEE
Q 032565 14 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLP-YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 92 (138)
Q Consensus 14 ~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 92 (138)
++.+++|++|.|+|++++++||+++||++........... ....++..++..+.+.....+ ...+..|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--------~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDSL--------QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCCC--------CCCCceEEEE
Confidence 3678999999999999999999999999876543321111 112234445666666532211 1135789999
Q ss_pred EEC--CHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEee
Q 032565 93 AIR--DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 93 ~v~--d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
.|+ +++++.++|+++|+++..+ .+.++++||+|||||.|||.+.
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 998 7999999999999988654 2247899999999999999864
No 11
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.90 E-value=5.3e-22 Score=123.74 Aligned_cols=123 Identities=24% Similarity=0.329 Sum_probs=86.1
Q ss_pred CCceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCe----EEEEeecCCCCCCCCCCCCCCC
Q 032565 11 LDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGR 86 (138)
Q Consensus 11 ~~~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~ 86 (138)
+..+.++++|+.|.|+|+++|++||+++|||++.............+++..++. .+.+.. ..... ....+.+
T Consensus 11 ~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~--~~~~~~g 86 (150)
T TIGR00068 11 PKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTH--NWGTE--KYDLGNG 86 (150)
T ss_pred cccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEee--cCCCC--cccCCCc
Confidence 445678899999999999999999999999998765432222223444544321 222221 11111 1122346
Q ss_pred CceEEEEECCHHHHHHHHHHCCCeEEec----C-CCccEEEEECCCCCeEEEEeec
Q 032565 87 DRHTCIAIRDVSKLKMILDKAGISYTLS----K-SGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~~g~~~~~~----~-~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
..|++|.|+|++++.++|+++|+++..+ . +..+.+|++||||++|||++..
T Consensus 87 ~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 87 FGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred eeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 7899999999999999999999987543 1 2346789999999999999864
No 12
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.89 E-value=2.9e-22 Score=121.43 Aligned_cols=119 Identities=20% Similarity=0.401 Sum_probs=86.8
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCC--CCCCCCCCceEEEEE
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 94 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~~~v 94 (138)
+++|+.|.|+|++++++||+++|||+..............+++..++..++|........... ......+..|++|.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 478999999999999999999999998764322222335667777777888875422221110 011235677999999
Q ss_pred CCHHHHHHHHHHCCCeEEe--c---CCCccEEEE--ECCCCCeEEEEe
Q 032565 95 RDVSKLKMILDKAGISYTL--S---KSGRPAIFT--RDPDANALEFTQ 135 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~--~---~~~~~~~~~--~DPdG~~~e~~~ 135 (138)
+|++++.++|+++|+++.. + .+|.+.+++ +||||+.||+.|
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 9999999999999998864 2 234455666 799999999975
No 13
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.89 E-value=6.4e-22 Score=124.13 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=85.1
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC---CeEEEEeecCCCCCCCCCCCCCCCCceEEEE
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 93 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 93 (138)
|++||+|.|+|++++++||+++|||++..... ....+...+ +..++++...... .......++.|++|.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~~~~l~Hiaf~ 72 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-----DRVRLEEGGGGPGAVVDVLEEPDQP---RGRPGAGTVHHVAFR 72 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-----CEEEEEecCCCCCCEEEEEeCCCCC---CCcccCCceEEEEEE
Confidence 58999999999999999999999999876543 123344433 4577777643211 111123567899999
Q ss_pred ECC---HHHHHHHHHHCCCeEEec--CCCccEEEEECCCCCeEEEEeec
Q 032565 94 IRD---VSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 94 v~d---~~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
|+| ++++.++|+++|+++..+ .+..+++||+||||+.|||++..
T Consensus 73 v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 73 VPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECC
Confidence 997 899999999999986544 34567899999999999999864
No 14
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.89 E-value=9e-22 Score=121.77 Aligned_cols=114 Identities=17% Similarity=0.257 Sum_probs=81.2
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCC-CeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEE
Q 032565 13 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-PYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 91 (138)
Q Consensus 13 ~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 91 (138)
+.+.+++|++|.|+|++++.+||+++|||++......... .....|+..++. .+....... + .+++.|+|
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h~~~~~~~------~--~~~~~Hia 72 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PHDIAFVGG------P--DGKLHHFS 72 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cceEEEecC------C--CCCceEEE
Confidence 4567899999999999999999999999997654322111 113456655432 222222111 0 24578999
Q ss_pred EEECCHHH---HHHHHHHCCCeEEecC-----CCccEEEEECCCCCeEEEEe
Q 032565 92 IAIRDVSK---LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 92 ~~v~d~~~---~~~~l~~~g~~~~~~~-----~~~~~~~~~DPdG~~~e~~~ 135 (138)
|+|+|+++ +.++|+++|+++...+ ++++++||+|||||.|||.+
T Consensus 73 f~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 73 FFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 99999887 5689999999886431 24678999999999999975
No 15
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.89 E-value=1.5e-21 Score=117.25 Aligned_cols=114 Identities=21% Similarity=0.314 Sum_probs=84.1
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC----eEEEEeecCCCCCCCCCCCCCCCCceEEEE
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 93 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 93 (138)
+.|++|.|+|+++|++||+++||++..............+++..++ ..+++........ ....+.+..|++|.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~i~~~ 77 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE---PYDNGNGFGHLAFA 77 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC---CcCCCCCeEEEEEE
Confidence 5799999999999999999999999876543332233456666543 3555543222111 11223457899999
Q ss_pred ECCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEE
Q 032565 94 IRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~ 134 (138)
|+|+++++++++++|+++..+ ..+++.++|+||||+++|++
T Consensus 78 v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 78 VDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred eCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 999999999999999998765 33567889999999999984
No 16
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.89 E-value=2.4e-21 Score=116.69 Aligned_cols=117 Identities=21% Similarity=0.383 Sum_probs=87.6
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 94 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 94 (138)
+++++|+.|.|+|++++++||+++||++.....+.. ...++..++..+.+......... .......+..|++|.+
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~hi~~~~ 75 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV----GRKALRFGSQKINLHPVGGEFEP-AAGSPGPGSDDLCLIT 75 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC----CceEEEeCCEEEEEecCCCccCc-CccCCCCCCceEEEEe
Confidence 467999999999999999999999999988754321 23456666677777654332211 1122345678999999
Q ss_pred CC-HHHHHHHHHHCCCeEEec-------CCCccEEEEECCCCCeEEEEee
Q 032565 95 RD-VSKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 95 ~d-~~~~~~~l~~~g~~~~~~-------~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
++ ++++.++|+++|+++... .++++.+|++|||||.||+.+.
T Consensus 76 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 76 EPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred cccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 74 999999999999987543 1235789999999999999874
No 17
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.89 E-value=1e-21 Score=116.26 Aligned_cols=110 Identities=40% Similarity=0.740 Sum_probs=85.4
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCe-EEEEeecCCCCCCCCCCCCCCCCceEEEEECC
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 96 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 96 (138)
|+|++|.|+|++++++||+++||++........ ...+|+..++. .+++...+..... +...++..|++|+|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDGPQLHLIEEDPPDAL---PEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCCcEEEEEecCCCccc---cCCCcccceEEEEeCC
Confidence 589999999999999999999999887653322 13456776655 6777765443221 2233556899999999
Q ss_pred HHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEE
Q 032565 97 VSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEF 133 (138)
Q Consensus 97 ~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~ 133 (138)
++++.++++++|+++..+ ..+.+++++.||+|+.+|+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 999999999999998765 2467889999999999996
No 18
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.88 E-value=1.6e-21 Score=118.95 Aligned_cols=110 Identities=23% Similarity=0.385 Sum_probs=84.4
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEEC--
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 95 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~-- 95 (138)
|+||.|.|+|++++++||+++||+++....+ ..+++..++..+.+...+... ......+..|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGGTWLALNEEPDIP----RNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCceEEEEEccCCCC----cCCcCccceEEEEEecHH
Confidence 5899999999999999999999999876432 234566677777665433211 1112346789999998
Q ss_pred CHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEeec
Q 032565 96 DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 96 d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
++++++++|++.|+++..+ .++++.+||.|||||+||+.+.+
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCc
Confidence 5999999999999987543 34678999999999999999764
No 19
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.88 E-value=6.3e-21 Score=115.21 Aligned_cols=113 Identities=28% Similarity=0.371 Sum_probs=85.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC--eEEEEeecCCCCCCCCCCCCCCCCceEEEE
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 93 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 93 (138)
++++|+.|.|+|++++++||+++|||++....+ ..+++..++ ..+.+...+... .......+..|++|.
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~~~~~l~l~~~~~~~---~~~~~~~~~~hi~f~ 71 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGGKRPLLVLEEDPDAP---PAPPGATGLYHFAIL 71 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCCCeEEEEEEeCCCCC---cccCCCCcEEEEEEE
Confidence 479999999999999999999999999987632 345666654 345555433221 112233457899999
Q ss_pred EC---CHHHHHHHHHHCCCeEEec--CCCccEEEEECCCCCeEEEEeec
Q 032565 94 IR---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 94 v~---d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
|+ ++++++++|+++|+++..+ ....+++|++|||||++||.+..
T Consensus 72 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 72 LPSRADLAAALRRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CCCHHHHHHHHHHHHHcCCceeccccccceeEEEEECCCCCEEEEEEec
Confidence 97 5889999999999987644 33457899999999999998754
No 20
>PLN02300 lactoylglutathione lyase
Probab=99.88 E-value=3.1e-21 Score=131.72 Aligned_cols=121 Identities=25% Similarity=0.325 Sum_probs=88.0
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC--e--EEEEeecCCCCCCCCCCCCCCCCc
Q 032565 13 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--E--MIHLMELPNPDPLSGRPEHGGRDR 88 (138)
Q Consensus 13 ~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~~ 88 (138)
+.+.++.|++|.|+|++++++||+++|||++.............+|+..++ . .+.+... ... .....+.+..
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~--~~~--~~~~~~~g~~ 95 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYN--YGV--DKYDIGTGFG 95 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEecc--CCC--CccccCCCcc
Confidence 568899999999999999999999999999876543233333456665542 2 2333221 111 1112345678
Q ss_pred eEEEEECCHHHHHHHHHHCCCeEEec----CC-CccEEEEECCCCCeEEEEeec
Q 032565 89 HTCIAIRDVSKLKMILDKAGISYTLS----KS-GRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 89 hi~~~v~d~~~~~~~l~~~g~~~~~~----~~-~~~~~~~~DPdG~~~e~~~~~ 137 (138)
|++|.|+|++++.++|++.|+++... +. +.+.+|++||||+.|||++..
T Consensus 96 hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~ 149 (286)
T PLN02300 96 HFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG 149 (286)
T ss_pred EEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC
Confidence 99999999999999999999987643 22 346789999999999999864
No 21
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.88 E-value=4.5e-21 Score=115.28 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=76.8
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECC
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 96 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 96 (138)
++.++.|.|+|+++|++||+++||+++....+ . ...+. ++..+.+...............+....|++|.|+|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~----~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d 74 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E----NVTFE-GGFALQEGYSWLEGISKADIIEKSNNFELYFEEED 74 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c----eEEEe-ccceeccchhhhccCCcccccccCCceEEEEEehh
Confidence 68899999999999999999999999865332 1 11111 22222221110000000111123445799999999
Q ss_pred HHHHHHHHHHCCC-eEEec----CCCccEEEEECCCCCeEEEEee
Q 032565 97 VSKLKMILDKAGI-SYTLS----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 97 ~~~~~~~l~~~g~-~~~~~----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+++++++|+++|+ ++..+ ++|.+.++|+|||||+|||.+.
T Consensus 75 vd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 75 FDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred hHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 9999999999975 55432 5577999999999999999875
No 22
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.88 E-value=5.3e-21 Score=121.03 Aligned_cols=118 Identities=22% Similarity=0.356 Sum_probs=83.1
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEE
Q 032565 13 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 92 (138)
Q Consensus 13 ~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 92 (138)
|.+.+++|+.|.|+|++++++||+++|||++..............|+..++....+....... ...+++.|++|
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~------~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPA------GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCC------CCCCCceEEEE
Confidence 678899999999999999999999999999876533222222456776643322222111111 11245789999
Q ss_pred EECC---HHHHHHHHHHCCCeEEec-----CCCccEEEEECCCCCeEEEEee
Q 032565 93 AIRD---VSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 93 ~v~d---~~~~~~~l~~~g~~~~~~-----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
.|+| +++++++|+++|+++... ......+|++|||||.||+.+.
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 9985 557789999999987532 1233468999999999999876
No 23
>PRK10291 glyoxalase I; Provisional
Probab=99.88 E-value=2.9e-21 Score=117.50 Aligned_cols=112 Identities=23% Similarity=0.368 Sum_probs=79.5
Q ss_pred EEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCe----EEEEeecCCCCCCCCCCCCCCCCceEEEEECCH
Q 032565 22 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 97 (138)
Q Consensus 22 ~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~ 97 (138)
+|.|+|+++|++||+++|||+...........+..+++..++. .+++..... . .....+.+..|++|.|+|+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~~~~~g~~~~hlaf~V~d~ 76 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG--V--DKYELGTAYGHIALSVDNA 76 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCC--C--CCCcCCCCeeEEEEEeCCH
Confidence 4789999999999999999998765544444445666655431 233332111 1 1112335678999999999
Q ss_pred HHHHHHHHHCCCeEEec----CCC-ccEEEEECCCCCeEEEEeec
Q 032565 98 SKLKMILDKAGISYTLS----KSG-RPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 98 ~~~~~~l~~~g~~~~~~----~~~-~~~~~~~DPdG~~~e~~~~~ 137 (138)
+++.++|+++|+++..+ .++ .+.++++||||+.|||++..
T Consensus 77 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 77 AEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred HHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 99999999999987643 233 34678899999999999854
No 24
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.88 E-value=2e-20 Score=112.68 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=83.8
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECCHHHH
Q 032565 21 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 100 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~ 100 (138)
-.|.|+|++++++||+++||+++....+........+.+..++..+.+.................+..|++|.|+|++++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~ 82 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAH 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHH
Confidence 35889999999999999999999876432222223445666776666654432221110112234457999999999999
Q ss_pred HHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEee
Q 032565 101 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 101 ~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+++++++|+++..+ ++|.+.++++|||||+|+|.++
T Consensus 83 ~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 83 YERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence 99999999988743 4577889999999999999763
No 25
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.88 E-value=5.4e-21 Score=115.07 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=82.0
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC-eEEEEeecCCCCCCCCCCCCCCCCceEE
Q 032565 13 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTC 91 (138)
Q Consensus 13 ~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 91 (138)
|.+.+++|+.|.|+|++++++||+++||+++....+ ..+|+...+ ...+.+..... ...+..|++
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~--------~~~~~~h~a 67 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES--------PEAGLGHIA 67 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC--------CCCceEEEE
Confidence 457899999999999999999999999999876533 235565422 11111111111 124578999
Q ss_pred EEEC---CHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEeec
Q 032565 92 IAIR---DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 92 ~~v~---d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
|.|+ +++++.++++++|+++.+. ++.++++||+|||||.+|+....
T Consensus 68 f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 68 WRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEec
Confidence 9997 5888899999999987532 45677899999999999998754
No 26
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.87 E-value=1.3e-20 Score=113.90 Aligned_cols=109 Identities=19% Similarity=0.295 Sum_probs=81.7
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEE
Q 032565 13 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 92 (138)
Q Consensus 13 ~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 92 (138)
.++.++.|+.|.|+|++++.+||+++|||++..... ..+|+..++....+. ..... ++..|++|
T Consensus 2 ~~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~~~i~-l~~~~---------~~~~~iaf 65 (124)
T cd08361 2 IELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARDHTLV-YIEGD---------PAEQASGF 65 (124)
T ss_pred ceEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCccEEEE-EEeCC---------CceEEEEE
Confidence 357899999999999999999999999999875432 246676653222222 11111 22478999
Q ss_pred EECC---HHHHHHHHHHCCCeEEec-------CCCccEEEEECCCCCeEEEEeec
Q 032565 93 AIRD---VSKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 93 ~v~d---~~~~~~~l~~~g~~~~~~-------~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
+|++ ++++.++++++|+++..+ +.+.+++||+|||||.||+...+
T Consensus 66 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 66 ELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 9985 999999999999988653 23456789999999999998754
No 27
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.87 E-value=1e-20 Score=112.63 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=80.1
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 94 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 94 (138)
+.+++|+.|.|+|++++++||++ |||+...... ..+|+..++....+....... ..+..|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTDPFVYVARKGE--------KARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCccEEEEcccCC--------cCcccEEEEEE
Confidence 46899999999999999999999 9998865432 245666543322332222111 14578999999
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEe
Q 032565 95 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+|.+++.+.+++.|...... +++++.++|+|||||.||++.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999999977543 456789999999999999975
No 28
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.87 E-value=1.3e-20 Score=113.37 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=79.7
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEEC-
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 95 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~- 95 (138)
+++|++|.|+|+++|++||+++|||++...... ..+|+..++..+.+.-.+.. ..+..|++|.++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPED-----GALYLRMDDRAWRIAVHPGE---------ADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCC-----CeEEEEccCCceEEEEEeCC---------CCceeEEEEEECC
Confidence 689999999999999999999999988654221 24566665443333322211 134679999997
Q ss_pred --CHHHHHHHHHHCCCeEEec-------CCCccEEEEECCCCCeEEEEee
Q 032565 96 --DVSKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 96 --d~~~~~~~l~~~g~~~~~~-------~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
|++++.++|+++|+++... +++++.+|++|||||.||++..
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 5888899999999998753 2345789999999999999864
No 29
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.87 E-value=2e-20 Score=111.37 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=82.4
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC-eEEEEeecCCCCCCCCCCCCCCCCceEEEEECC
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 96 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 96 (138)
+.|++|.|+|++++++||+++||+++..... .. ...+++..++ ....++...... ...+...|++|.++|
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~f~v~d 71 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GG--GDYAVFSTGGGAVGGLMKAPEPA------AGSPPGWLVYFAVDD 71 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CC--CceEEEEeCCccEEEEecCCCCC------CCCCCeEEEEEEeCC
Confidence 4799999999999999999999999876543 11 1345566554 345555443221 112445799999999
Q ss_pred HHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEe
Q 032565 97 VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 97 ~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~ 135 (138)
++++.++|+++|+++..+ +++++.++++|||||.|+|+|
T Consensus 72 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 72 VDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 999999999999988644 346789999999999999975
No 30
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.87 E-value=3.4e-21 Score=120.46 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=79.9
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCC-CCCeeEEEEEeCCe--EEEEeecCCCCCCCCCCCCCCCCceEEEE
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 93 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~-~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 93 (138)
+++||+|.|+|++++++||+++||+++....... ......+|+..++. .+......-.. ..+.++.|+||.
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~~~~g~~Hiaf~ 74 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ------GPESGVHHAAFE 74 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc------CCCCceeEEEEE
Confidence 4799999999999999999999999987543221 12235667766432 11110000000 113668999999
Q ss_pred ECCHHHHH---HHHHHCCCeEEecC-----CCccEEEEECCCCCeEEEEee
Q 032565 94 IRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 94 v~d~~~~~---~~l~~~g~~~~~~~-----~~~~~~~~~DPdG~~~e~~~~ 136 (138)
|+|++++. ++|+++|+++.+.. +...++|++|||||.|||...
T Consensus 75 v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 75 VHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred cCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 99999986 99999999987642 224467999999999999853
No 31
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.87 E-value=1.4e-20 Score=113.44 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=79.3
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC-C-eEEEEeecCCCCCCCCCCCCCCCCceEEE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-A-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 92 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 92 (138)
+++++|+.|.|+|++++++||+++|||++....+. ..+++... + ....+. .... ...+..|++|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~-----~~~~~~~~~~~~~~~~~-l~~~--------~~~~~~hiaf 67 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ-----GRVYLKAWDEFDHHSIV-LREA--------DTAGLDFMGF 67 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC-----ceEEEEccCCCcccEEE-eccC--------CCCCeeEEEE
Confidence 56899999999999999999999999998765321 12445432 1 111121 1111 1234689999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEec-----CCCccEEEEECCCCCeEEEEee
Q 032565 93 AIR---DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 93 ~v~---d~~~~~~~l~~~g~~~~~~-----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
.|+ +++++.++|+++|+++... +..++.+||+|||||.||+.+.
T Consensus 68 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 68 KVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred EeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 997 7899999999999988643 2346789999999999999875
No 32
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.87 E-value=1.8e-20 Score=111.85 Aligned_cols=113 Identities=21% Similarity=0.300 Sum_probs=81.1
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC---CeEEEEeecCCCCCCCCCCCCCCCCceEEEEECC
Q 032565 20 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 96 (138)
Q Consensus 20 hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 96 (138)
|++|.|+|++++++||+++|||++........ ......+..+ +..+.+........ ......++..|++|.|+|
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~v~d 77 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGSPETSLVLAPPANPAA--MSGLQPGGTPGLVLATDD 77 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCCCeeEEEEeCCCCccc--cccccCCCceEEEEEehH
Confidence 78999999999999999999999987654211 1222333332 23444443322211 122234567799999999
Q ss_pred HHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEe
Q 032565 97 VSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 97 ~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~ 135 (138)
++++.++++++|+++..+ ..+++.++++||+||.|||+|
T Consensus 78 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 78 IDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 999999999999988754 345689999999999999975
No 33
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.87 E-value=2.3e-20 Score=112.69 Aligned_cols=107 Identities=21% Similarity=0.303 Sum_probs=80.4
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC-CeEEEEeecCCCCCCCCCCCCCCCCceEEEE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 93 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 93 (138)
..++.|+.|.|+|+++|++||+++||++...... ..+++..+ +..+.+..... ..+..|++|.
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~l~~~~~~~----------~~~~~h~a~~ 65 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG------PFAVVKLDNGVSLDFAQPDG----------EIPPQHYAFL 65 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC------CEEEEEcCCCcEEEEecCCC----------CCCcceEEEE
Confidence 3579999999999999999999999999876322 12334433 33455443211 1235799998
Q ss_pred EC--CHHHHHHHHHHCCCeEEec-----------CCCccEEEEECCCCCeEEEEeec
Q 032565 94 IR--DVSKLKMILDKAGISYTLS-----------KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 94 v~--d~~~~~~~l~~~g~~~~~~-----------~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
++ |++++.++|+++|+++... .++++.+||+|||||.||+++.+
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 87 6999999999999987432 35779999999999999999874
No 34
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.87 E-value=2.9e-20 Score=112.76 Aligned_cols=114 Identities=25% Similarity=0.345 Sum_probs=85.9
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhh---CCeeeccCCCCCCCeeEEEEEe-CCeEEEEeecCCCCCCCCCCCCCCCCceEEE
Q 032565 17 SVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 92 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~l---g~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 92 (138)
+++||.|.|+|++++++||+++| ||+....... ...|... ++..+.++........ .......+..|++|
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-----~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~~g~~hia~ 74 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-----GRSWRAGDGGTYLVLQQADGESAG-RHDRRNPGLHHLAF 74 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-----CceEEecCCceEEEEEecccCCCc-ccccCCcCeeEEEE
Confidence 58999999999999999999999 9998875421 2244443 5667878765543221 11123455789999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEec-------CCCccEEEEECCCCCeEEEEee
Q 032565 93 AIR---DVSKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 93 ~v~---d~~~~~~~l~~~g~~~~~~-------~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
.|+ |++++.++|+++|+++... ..+.+.+|++||||+++||+.+
T Consensus 75 ~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 75 RAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 997 5889999999999998754 2356799999999999999864
No 35
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.87 E-value=1.4e-20 Score=113.32 Aligned_cols=107 Identities=26% Similarity=0.410 Sum_probs=81.7
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEE--
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI-- 94 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v-- 94 (138)
+++|+.|.|+|++++++||+++||+++....+ ...++..++..+.+...... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~-------~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGDLWLCLSVDANV-------GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC------CceEEecCCEEEEEecCCCC-------CCCCCeeeEEEEeCH
Confidence 58999999999999999999999999876543 23556666655555322211 0124568999999
Q ss_pred CCHHHHHHHHHHCCCeEEec-CCCccEEEEECCCCCeEEEEee
Q 032565 95 RDVSKLKMILDKAGISYTLS-KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~-~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+|+++++++++++|+++..+ ...++.+||.|||||.|||.+.
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEeC
Confidence 48999999999999987544 3356899999999999999864
No 36
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.86 E-value=2e-20 Score=111.72 Aligned_cols=106 Identities=21% Similarity=0.292 Sum_probs=82.7
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC-CeEEEEeecCCCCCCCCCCCCCCCCceEEEEE
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 94 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 94 (138)
++++|+.|.|+|++++++||+++|||++....+ ..+|+..+ +....+.....+ ..+..|++|.|
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~~v 65 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSEDDHHSLVLTEGD---------EPGVDALGFEV 65 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCCCcEEEEEEeCC---------CCCceeEEEEc
Confidence 469999999999999999999999999887643 34677765 333333322211 13468999999
Q ss_pred C---CHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEee
Q 032565 95 R---DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 95 ~---d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+ +++++.++++++|+++... +++++.+++.||+||.+|+...
T Consensus 66 ~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 66 ASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 7 6888999999999998654 4467899999999999999864
No 37
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.86 E-value=1.3e-20 Score=113.70 Aligned_cols=116 Identities=21% Similarity=0.406 Sum_probs=83.7
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCC-CeeEEEEEe----CCeEEEEeecCCCCCCCCCCCCCCCCceEE
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-PYRGAWLWV----GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 91 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~-~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 91 (138)
+++||+|.|+|++++++||+++|||+.......... .....++.. ++..++|+..+..... ......+..|++
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~~hi~ 78 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPK--GRRGPGQIHHIA 78 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCC--CCCCCCcEEEEE
Confidence 578999999999999999999999998766442211 112233322 2346777765433211 122234568999
Q ss_pred EEEC---CHHHHHHHHHHCCCeEEec--CCCccEEEEECCCCCeEEEE
Q 032565 92 IAIR---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 92 ~~v~---d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPdG~~~e~~ 134 (138)
|.|+ +++++.++++++|+++..+ ..+++.+|++||+||+|||+
T Consensus 79 f~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 79 FSVPSEASLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEcCCHHHHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEeC
Confidence 9998 5799999999999987644 45778999999999999984
No 38
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.86 E-value=6.4e-20 Score=112.16 Aligned_cols=113 Identities=25% Similarity=0.370 Sum_probs=83.2
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC---CeEEEEeecCCCCCCCCCCCCCCCCceEEEE
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 93 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 93 (138)
+|+|+.|.|+|++++++||+++|||++....+. ....++..+ ...+.++....... .....+..|++|.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~f~ 72 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPDEHHQIALITGRPAAP----PPGPAGLNHIAFE 72 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCCCceEEEEEecCCCCC----CCCCCCceEEEEE
Confidence 489999999999999999999999998765432 134555544 23566554332211 1223567899999
Q ss_pred ECCHH---HHHHHHHHCCCeEEec--CCCccEEEEECCCCCeEEEEeec
Q 032565 94 IRDVS---KLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 94 v~d~~---~~~~~l~~~g~~~~~~--~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
|+|++ +++++|.+.|+++... .++++.++++||+||.|||++..
T Consensus 73 v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 73 VDSLDDLRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred eCCHHHHHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEcC
Confidence 98765 5789999999987654 34568999999999999999754
No 39
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.86 E-value=1.8e-20 Score=111.29 Aligned_cols=106 Identities=23% Similarity=0.392 Sum_probs=80.2
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEEC--CH
Q 032565 20 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DV 97 (138)
Q Consensus 20 hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~--d~ 97 (138)
|+.|.|+|++++++||+++||++.....+ ...++..++..+.+....... ....+..|++|.|+ ++
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~------~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELAGLWICLMEEDSLQ------GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEecCeEEEeccCCCcC------CCCCCccEEEEEcCHHHH
Confidence 78999999999999999999999876543 235566666555543322111 11245689999995 79
Q ss_pred HHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEeec
Q 032565 98 SKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 98 ~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
+++.++++++|+++... ..+++.+|++|||||+||+.+.+
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 112 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHAGT 112 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEeCc
Confidence 99999999999998643 23678999999999999998643
No 40
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.86 E-value=2.1e-20 Score=112.12 Aligned_cols=108 Identities=21% Similarity=0.311 Sum_probs=81.0
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 94 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 94 (138)
+.+|+|+.|.|+|++++++||+++|||+...... ..+++..++....++...... ..+..|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGSEHHILRLRRSD--------RNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCCccEEEEeccCC--------CCCCceEEEEe
Confidence 3589999999999999999999999999875433 235565443333333322211 12357999999
Q ss_pred C---CHHHHHHHHHHCCCeEEec------CCCccEEEEECCCCCeEEEEee
Q 032565 95 R---DVSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 95 ~---d~~~~~~~l~~~g~~~~~~------~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+ +++++.+++++.|+++..+ +++++.+++.||+||.+|+++.
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 4 7899999999999988643 2357889999999999999875
No 41
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.86 E-value=1.9e-20 Score=113.35 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=88.2
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCC-CCCeeEEEEEeCCeEEEEeecCCCCCCCC--CCCCCCCCceEEEEE
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 94 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~~~v 94 (138)
++||+|.|+|++++++||+++|||+........ ......+++..++..+.++.......... ....+.+..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 579999999999999999999999998765432 22334677777788888886543322111 012346678999999
Q ss_pred CCHHHHHHHHHHCCCeEEec----CCCccEEEEECCC---CCeEEEEe
Q 032565 95 RDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPD---ANALEFTQ 135 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPd---G~~~e~~~ 135 (138)
+|++++.++++++|+++..+ ..+++.+++.||+ |+.|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 99999999999999998654 2345566666665 99999975
No 42
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.86 E-value=5.7e-20 Score=110.94 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=80.0
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCC-----CC-CCCCCCCCCCceEE
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD-----PL-SGRPEHGGRDRHTC 91 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~-~~~~~~~~~~~hi~ 91 (138)
+.|+.|.|+|++++++||+++|||+.......+ ....+..++..+.+....... .. +..+...++..|++
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESG----DYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIA 76 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCC----cEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEE
Confidence 468999999999999999999999986533211 112233344555454322110 00 01111223346899
Q ss_pred EEECCHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEee
Q 032565 92 IAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 92 ~~v~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
|.|+|+++++++++++|+++..+ ++|.+.++++|||||.||+.++
T Consensus 77 ~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 77 FVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 99999999999999999987543 4567889999999999999874
No 43
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.86 E-value=5.2e-20 Score=110.34 Aligned_cols=110 Identities=16% Similarity=0.198 Sum_probs=77.8
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC--eEEEEeecCCCCCCCCCCCCCCCCceEEEEECCH
Q 032565 20 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 97 (138)
Q Consensus 20 hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~ 97 (138)
+..|.|+|++++++||+++|||+.....+ ....+..++ ..+.+................+...|++|.|+|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 77 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQGLILNFEVDDV 77 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCCceEEEEccCCCCCCcchhcccCCceEEEEEEECCH
Confidence 46799999999999999999999886522 233454443 3444443322211101111122335999999999
Q ss_pred HHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEe
Q 032565 98 SKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 98 ~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+++.++++++|+++..+ +++.+.++++||||++|||+|
T Consensus 78 d~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 78 DAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 99999999999987543 456789999999999999986
No 44
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.86 E-value=1.1e-19 Score=109.12 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=83.6
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECCHHHH
Q 032565 21 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 100 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~ 100 (138)
..|.|+|++++++||+++||+++.............+.+..++..+.+........ .......+..|++|.|+|++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~v~d~~~~ 82 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHG--SPASWGGTPVSLHLYVEDVDAT 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccC--CCCCCCCceEEEEEEeCCHHHH
Confidence 45889999999999999999998876542232234455666777777664322111 1112234567999999999999
Q ss_pred HHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEe
Q 032565 101 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 101 ~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~ 135 (138)
++++.+.|+++..+ .++.+.++++||||+.|+|.+
T Consensus 83 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 83 FARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 99999999987543 557789999999999999986
No 45
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.86 E-value=5.6e-20 Score=112.56 Aligned_cols=107 Identities=20% Similarity=0.338 Sum_probs=79.4
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC----eEEEEeecCCCCCCCCCCCCCCCCceEE
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTC 91 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 91 (138)
.+++|+.|.|+|++++++||+++||+++..... . ..+|+..++ ..+.+...+. ...++.|++
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~---------~~~g~~hia 67 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA---------PMAGFHHAA 67 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC---------CCCcceEEE
Confidence 479999999999999999999999999876432 1 345666642 1333332211 125688999
Q ss_pred EEECCHHHHH---HHHHHCCCeEEecC-----CCccEEEEECCCCCeEEEEee
Q 032565 92 IAIRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 92 ~~v~d~~~~~---~~l~~~g~~~~~~~-----~~~~~~~~~DPdG~~~e~~~~ 136 (138)
|.|+|++++. ++|+++|+++...+ .+.+++||+||+|+.||+...
T Consensus 68 f~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~ 120 (134)
T cd08360 68 FEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGAD 120 (134)
T ss_pred EEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcc
Confidence 9999888776 59999999876431 234568999999999999853
No 46
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.86 E-value=3e-20 Score=116.28 Aligned_cols=112 Identities=17% Similarity=0.286 Sum_probs=81.1
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCC---CCCeeEEEEEeCCe--EEEEeecCCCCCCCCCCCCCCCCce
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHD---KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRH 89 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~---~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~h 89 (138)
.++|+||+|.|+|++++++||+++|||++....... ......+|+..++. .+.+.... ...++.|
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~----------~~~g~~H 76 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGP----------GPKRIHH 76 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCC----------CCceeEE
Confidence 357999999999999999999999999986532211 11224566666432 23332111 1255789
Q ss_pred EEEEECCHH---HHHHHHHHCCCeEEec-----CCCccEEEEECCCCCeEEEEee
Q 032565 90 TCIAIRDVS---KLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 90 i~~~v~d~~---~~~~~l~~~g~~~~~~-----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
++|.|+|++ ++.++|+++|+++..+ ..+.+++|++||+|+.|||...
T Consensus 77 iaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 77 LMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 999998655 5799999999998654 2356889999999999999753
No 47
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.85 E-value=2.3e-21 Score=117.10 Aligned_cols=117 Identities=25% Similarity=0.430 Sum_probs=83.8
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCC--CCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCC-CCCCCceEEEE
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARP--HDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPE-HGGRDRHTCIA 93 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~hi~~~ 93 (138)
||+||+|.|+|++++++||+++|||++..... .........++..++..+.+.....+........ ...+..|+++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 68999999999999999999999999987755 1223334566777777777766554433221110 00135677777
Q ss_pred EC---CHHHHHHHHHHCCCeEEec-----CCCccEEEEECCCCCeEEE
Q 032565 94 IR---DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEF 133 (138)
Q Consensus 94 v~---d~~~~~~~l~~~g~~~~~~-----~~~~~~~~~~DPdG~~~e~ 133 (138)
+. |++++.++|++.|+++..+ ......+|++||+|+.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 76 6778899999999988754 2344456899999999997
No 48
>PRK06724 hypothetical protein; Provisional
Probab=99.85 E-value=5.7e-20 Score=111.62 Aligned_cols=108 Identities=22% Similarity=0.279 Sum_probs=75.2
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhh---CCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceE
Q 032565 14 GVVSVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 90 (138)
Q Consensus 14 ~~~~l~hi~l~v~d~~~a~~fy~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi 90 (138)
++.+++||.|.|+|+++|++||+++| |++.... .. +..+...+.+....... ....+..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~---------~~-~~~g~~~l~l~~~~~~~------~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE---------VA-YSTGESEIYFKEVDEEI------VRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee---------Ee-eeCCCeeEEEecCCccc------cCCCCceeE
Confidence 34579999999999999999999977 5543211 01 11233344443322110 112356899
Q ss_pred EEEE---CCHHHHHHHHHHCCCeEEec----C---CCccEEEEECCCCCeEEEEeec
Q 032565 91 CIAI---RDVSKLKMILDKAGISYTLS----K---SGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 91 ~~~v---~d~~~~~~~l~~~g~~~~~~----~---~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
||.| ++++++.++|+++|+++..+ + ++.++++|+|||||.||+...+
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 9998 58999999999999988533 1 3447899999999999998653
No 49
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.85 E-value=1.1e-19 Score=114.61 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=76.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEEC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 95 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~ 95 (138)
++++||+|.|+|++++++||+++|||++..............|+..++....+..... .+.++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~---------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGG---------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecC---------CCCceeEEEEEcC
Confidence 5799999999999999999999999988654322122223345544322111111111 1245789999998
Q ss_pred C---HHHHHHHHHHCCCeE--Eec-----CCCccEEEEECCCCCeEEEEee
Q 032565 96 D---VSKLKMILDKAGISY--TLS-----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 96 d---~~~~~~~l~~~g~~~--~~~-----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
| ++++.++|+++|+.. ... ..+.+++|++|||||.||+++.
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 5 777889999999863 211 1234679999999999999863
No 50
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.84 E-value=1.3e-19 Score=112.18 Aligned_cols=105 Identities=16% Similarity=0.323 Sum_probs=78.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCe--EEEEeecCCCCCCCCCCCCCCCCceEEEE
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 93 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 93 (138)
.+++|+.|.|+|++++++||+++|||+...... . ..+|+..++. .+.+.. . ..++..|++|.
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~~~~~~l~~---~--------~~~~~~hiaf~ 66 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSDHHSIAIAR---G--------PHPSLNHVAFE 66 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCCcceEEEcc---C--------CCCceEEEEEE
Confidence 479999999999999999999999999865422 1 3456666543 233321 1 12457899999
Q ss_pred ECCHHHHH---HHHHHCCCeEEec-----CCCccEEEEECCCCCeEEEEee
Q 032565 94 IRDVSKLK---MILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 94 v~d~~~~~---~~l~~~g~~~~~~-----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
|+|++++. ++|+++|+++... .++.+.+||+||+||.+||++.
T Consensus 67 v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~ 117 (144)
T cd07239 67 MPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSE 117 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccC
Confidence 99888775 8999999988643 2234678999999999999875
No 51
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.84 E-value=1.1e-19 Score=109.24 Aligned_cols=107 Identities=23% Similarity=0.306 Sum_probs=79.2
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC--CeEEEEeecCCCCCCCCCCCCCCCCceEEE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 92 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 92 (138)
++++.|+.|.|+|++++++||+++||+++..... ..+++... .....+...... ..+..|++|
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~hi~~ 66 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKAP---------VAGLGHIAF 66 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeCC---------CCceeEEEE
Confidence 5789999999999999999999999999876532 23455431 122222211111 134689999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEec-----CCCccEEEEECCCCCeEEEEee
Q 032565 93 AIR---DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 93 ~v~---d~~~~~~~l~~~g~~~~~~-----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
.|. +++++.++++++|+++... ++.++++|+.|||||.||++..
T Consensus 67 ~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 67 RVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred ECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 994 7888999999999988542 3345899999999999999864
No 52
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.84 E-value=3e-19 Score=107.31 Aligned_cols=114 Identities=26% Similarity=0.500 Sum_probs=83.3
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC-eEEEEeecCCCCCCC--CCCCCCCCCceEEEEE
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLS--GRPEHGGRDRHTCIAI 94 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~--~~~~~~~~~~hi~~~v 94 (138)
+.++.|.|+|++++++||+++|||++..... . ..+++..++ ..+.++......... .......+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKED-R----RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCC-C----ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 4589999999999999999999999887421 1 345666665 455555433221100 0111234678999999
Q ss_pred C--CHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEee
Q 032565 95 R--DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 95 ~--d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+ |++++++++.++|+++... .++++.++++||||++||+++.
T Consensus 76 ~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 76 PAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred CHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 5 8999999999999987654 4577899999999999999863
No 53
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.84 E-value=2.8e-19 Score=107.48 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=78.9
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECCHHHH
Q 032565 21 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 100 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~ 100 (138)
..|.|+|+++|++||++ |||+.....+. ..+++..++..++|+......+ .....|++|.|+|++++
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~~~l~l~~~~~~~~-------~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGDLELHFFAHPDLDP-------ATSPFGCCLRLPDVAAL 72 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCCEEEEEEecCcCCC-------CCCcceEEEEeCCHHHH
Confidence 56899999999999999 99998765432 2455666777788875432111 11235799999999999
Q ss_pred HHHHHHCCCeEE--------ec---CCCccEEEEECCCCCeEEEEee
Q 032565 101 KMILDKAGISYT--------LS---KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 101 ~~~l~~~g~~~~--------~~---~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+++|+++|+++. .+ +++.+.++++|||||.|||.|.
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 999999999742 22 3678999999999999999884
No 54
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.84 E-value=3.7e-19 Score=108.52 Aligned_cols=108 Identities=19% Similarity=0.324 Sum_probs=79.9
Q ss_pred eeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCe--EEEEeecCCCCCCCCCCCCCCCCceEEEEECC
Q 032565 19 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 96 (138)
Q Consensus 19 ~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 96 (138)
+||.|.|+|++++++||+++||+++....... .....+|+..++. .+.+.... . ..+..|++|.|+|
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~--~--------~~~~~hl~~~v~d 69 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHHDLALFPGP--E--------RPGLHHVAFEVES 69 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcceEEEEcCC--C--------CCCeeEEEEEcCC
Confidence 59999999999999999999999987654322 2224567776543 33333211 1 2457899999997
Q ss_pred HH---HHHHHHHHCCCeEEec-----CCCccEEEEECCCCCeEEEEeec
Q 032565 97 VS---KLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 97 ~~---~~~~~l~~~g~~~~~~-----~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
++ ++.++|+++|+++... .++.++++++||||+.|||.+..
T Consensus 70 ~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 70 LDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 65 6789999999988643 22457889999999999998753
No 55
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.83 E-value=5.7e-19 Score=104.55 Aligned_cols=105 Identities=30% Similarity=0.470 Sum_probs=80.0
Q ss_pred EEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECCHHHHH
Q 032565 22 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLK 101 (138)
Q Consensus 22 ~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~~ 101 (138)
.|.|+|++++++||+++|||+....... ...+++..++..+++......... ...+..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHPE----PGYAFLSRGGAQLMLSEHDGDEPV-----PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcCC----CcEEEEEeCCEEEEEeccCCCCCC-----CCCCcEEEEEEeCCHHHHH
Confidence 5899999999999999999998775431 134556667777777654432211 2234568999999999999
Q ss_pred HHHHHCCCe-EEec----CCCccEEEEECCCCCeEEEEe
Q 032565 102 MILDKAGIS-YTLS----KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 102 ~~l~~~g~~-~~~~----~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+++++.|++ +..+ .++.+.++++||+|+.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 999999998 4322 446689999999999999986
No 56
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.83 E-value=4.9e-19 Score=106.78 Aligned_cols=111 Identities=22% Similarity=0.294 Sum_probs=74.7
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCC---CCCCCCCCCCceEEE--EE
Q 032565 20 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL---SGRPEHGGRDRHTCI--AI 94 (138)
Q Consensus 20 hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~hi~~--~v 94 (138)
||.|.|+|++++++||+++||+++..... ....+..++..+.+......... ........+..|+++ .+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 75 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSE 75 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeH
Confidence 89999999999999999999999865422 12223334444444332221110 011111223567755 55
Q ss_pred CCHHHHHHHHHHCCCeEEec--------CCCccEEEEECCCCCeEEEEee
Q 032565 95 RDVSKLKMILDKAGISYTLS--------KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~--------~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+|+++++++|+++|+++..+ +++++.+|++|||||.|||.++
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 79999999999999988642 2345889999999999999863
No 57
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.83 E-value=1.2e-18 Score=105.13 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=75.5
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCC-----------CCeeEEEEEeC----CeEEEEeecCCCCCCCCCC
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWVG----AEMIHLMELPNPDPLSGRP 81 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~-----------~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~ 81 (138)
++.|++|.|+|+++|++||+++|||++..+...+. .....+++..+ +..++|....+..+ .
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~----~ 77 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGD----Y 77 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCC----C
Confidence 58999999999999999999999999876543222 11112334332 23566654332211 1
Q ss_pred CCCCCCceEEEEECCHHHHHHHHHHCCCeEEecCCCccEEEEECCCCCeEEEEe
Q 032565 82 EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 82 ~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e~~~ 135 (138)
..+. .|++|.|++. ++.++|+++|+++...+.+ .++++||||+.|||+.
T Consensus 78 ~~g~--~~~hlav~~~-d~~~~l~~~Gv~~~~~~~~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 78 ELGN--DFLGITIHSK-QAVSNAKKHNWPVTEVEDG--VYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCC--CEEEEEEECH-HHHHHHHHCCCceecCCCC--EEEEECCCCCEEEEec
Confidence 2222 2677777777 5569999999988876543 8899999999999974
No 58
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.83 E-value=9.5e-19 Score=104.12 Aligned_cols=106 Identities=22% Similarity=0.261 Sum_probs=77.9
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEe-CCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECC---
Q 032565 21 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD--- 96 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d--- 96 (138)
+.|.|+|+++|++||+++||+++....+ ..+.+.. ++..+.++....... .+....+..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP------TFALFVLGSGVKLGLWSRHTVEP---ASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC------ceEEEEeCCCcEEEEeeccccCC---CCCCCCCceEEEEEcCCHHH
Confidence 5789999999999999999999776432 2233444 456777765443221 11123456899999985
Q ss_pred HHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEe
Q 032565 97 VSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 97 ~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+++++++++++|+++..+ .+.++.++|+|||||.||+++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEeeC
Confidence 888999999999988754 334578999999999999974
No 59
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.83 E-value=1.2e-18 Score=104.57 Aligned_cols=107 Identities=23% Similarity=0.413 Sum_probs=76.9
Q ss_pred eeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECC--
Q 032565 19 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD-- 96 (138)
Q Consensus 19 ~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d-- 96 (138)
.|+.|.|+|++++++||+++||++.....+ . ... +..++..+.+........ . ..+..|++|.+++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~---~~~-~~~~~~~~~~~~~~~~~~----~--~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D---YAK-FLLEDPRLNFVLNERPGA----P--GGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C---eeE-EEecCCceEEEEecCCCC----C--CCCeeEEEEEeCCHH
Confidence 589999999999999999999998766532 1 122 333333344432222111 0 1457899999987
Q ss_pred -HHHHHHHHHHCCCeEEecC------CCccEEEEECCCCCeEEEEeec
Q 032565 97 -VSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 97 -~~~~~~~l~~~g~~~~~~~------~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
++++.+++.++|+++...+ .+.+.+|++||+||.|||.+..
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 7889999999999986541 1356899999999999999864
No 60
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.83 E-value=7.3e-19 Score=105.79 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=76.7
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC-CeEEEEeecCCCCC-CCCCCCCCCCCceEEEEEC
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDP-LSGRPEHGGRDRHTCIAIR 95 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~~~~~~~~~hi~~~v~ 95 (138)
|+||+|.|+|+++|++||+. |||+........ ..+.+..+ +..+.+........ .+..+....+..|++|.+.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~----~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE----PHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCE 75 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC----CcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcC
Confidence 57999999999999999975 999976543211 22344454 45555533221110 0111112234568899875
Q ss_pred ---CHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEE
Q 032565 96 ---DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 96 ---d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~ 134 (138)
|+++++++|+++|+++..+ +++.+.++++|||||.|||+
T Consensus 76 ~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 76 TPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 8999999999999977543 45678899999999999997
No 61
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.83 E-value=5.4e-19 Score=106.74 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=77.0
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC-CeEEEEeecCCCC---CCCCCCCCCCCCceEEEE
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPD---PLSGRPEHGGRDRHTCIA 93 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~~~~~~~~~~~hi~~~ 93 (138)
+.++.|.|+|++++++||++ |||+......... ..++..+ +..+.+....... .............|++|.
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~ 75 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLS 75 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEe
Confidence 35789999999999999987 9999775333221 2334344 4566665432111 000000122345699999
Q ss_pred EC---CHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEe
Q 032565 94 IR---DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 94 v~---d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~ 135 (138)
|+ ++++++++++++|+++..+ .++.+.+||+|||||+||++.
T Consensus 76 v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 76 ADSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CCCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 98 5888999999999988653 334568999999999999985
No 62
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.82 E-value=6.5e-19 Score=103.76 Aligned_cols=100 Identities=27% Similarity=0.505 Sum_probs=72.5
Q ss_pred EEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC----eEEEEeecCCCCCCCCCCCCCCCCceEEEEECCHH
Q 032565 23 ILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 98 (138)
Q Consensus 23 l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~ 98 (138)
|.|+|++++++||+++|||++....+ ..+.+..+. ....+...+... ....+..|++|.|+|++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~dv~ 68 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFPDPP------GPPGGGFHLCFEVEDVD 68 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEESSS------SSSSSEEEEEEEESHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCCccc------cCCCceeEEEEEEcCHH
Confidence 68999999999999999999998433 223344332 123333332211 11355689999999999
Q ss_pred HHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEE
Q 032565 99 KLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 99 ~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~ 134 (138)
+++++++++|+++..+ .++.+.++++|||||+|||+
T Consensus 69 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 69 ALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 9999999999997543 55779999999999999986
No 63
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=6e-19 Score=105.03 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=75.9
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECCHHHH
Q 032565 21 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 100 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~ 100 (138)
..|.|+|++++++||++ |||+.....+ ..+++..++..+.+....... .....+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~~~l~l~~~~~~~--------~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGNCAFYLQDYYVKD--------WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCCEEEEeecCCCcc--------cccCCEEEEEECCHHHH
Confidence 35789999999999988 9999987532 356777777766654321111 12235799999999999
Q ss_pred HHHHHHCCCeEE---------ecCCCccEEEEECCCCCeEEEEe
Q 032565 101 KMILDKAGISYT---------LSKSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 101 ~~~l~~~g~~~~---------~~~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+++|+++|+++. ...+|.+.++++|||||+|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 999999998642 11567899999999999999875
No 64
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.82 E-value=1.9e-18 Score=102.56 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=74.2
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC---CeEEEEeecCCCCCCCCCCCCCCCCceEEEEECCH
Q 032565 21 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 97 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~ 97 (138)
..|.|+|++++++||+++|||+...... ..+++..+ +..+.+...... +....|++|.|+|+
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~v~d~ 68 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDHG------WIATFASPQNMTVQVSLATEGGT---------ATVVPDLSIEVDDV 68 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcCC------ceEEEeecCCCCcEEEEecCCCC---------CCCCCEEEEEeCCH
Confidence 3588999999999999999999865311 22334432 233444322111 12246999999999
Q ss_pred HHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEee
Q 032565 98 SKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 98 ~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+++.++|+++|+++... .+|.+.+++.||+||.|+++++
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 69 DAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 99999999999987653 4466899999999999999985
No 65
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.82 E-value=7.8e-19 Score=120.78 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=80.1
Q ss_pred CCceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCe-eEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCce
Q 032565 11 LDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY-RGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRH 89 (138)
Q Consensus 11 ~~~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~h 89 (138)
+.+.+++++||+|.|+|++++++||+++|||+............ ...|+..++. .+.+..... ...+.++|
T Consensus 139 ~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~g~~~H 210 (303)
T TIGR03211 139 RGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK-AHDIAFVGD-------PEPGKLHH 210 (303)
T ss_pred CCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC-CcccceecC-------CCCCceEE
Confidence 44678899999999999999999999999999865432222111 2345544321 111111000 01234789
Q ss_pred EEEEECC---HHHHHHHHHHCCCeEEecC-----CCccEEEEECCCCCeEEEEe
Q 032565 90 TCIAIRD---VSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 90 i~~~v~d---~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~DPdG~~~e~~~ 135 (138)
+||.|+| ++++.++|+++|+++..++ ...+++||+|||||.||+.+
T Consensus 211 iaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 211 VSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 9999996 4556789999999986531 13578999999999999973
No 66
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.82 E-value=1e-18 Score=107.75 Aligned_cols=104 Identities=17% Similarity=0.241 Sum_probs=76.8
Q ss_pred eeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC-eEEEEeecCCCCCCCCCCCCCCCCceEEEEECCH
Q 032565 19 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 97 (138)
Q Consensus 19 ~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~ 97 (138)
.||.|.|+|++++++||.++|||++...... ..+|++..+ ...+...... ....+++|++|.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~--------~~~~gl~Hiaf~v~~~ 67 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP--------ASSSHFHHVNFMVTDI 67 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc--------CCCCceEEEEEECCCH
Confidence 4899999999999999999999998765321 456776532 2222222111 1235789999999865
Q ss_pred ---HHHHHHHHHCCCeEEec-----CCCccEEEEECCCCCeEEEEe
Q 032565 98 ---SKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 98 ---~~~~~~l~~~g~~~~~~-----~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+++.++|+++|+++... ..+.+.+|++||+|+.||+..
T Consensus 68 ~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 68 DDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred HHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEe
Confidence 56799999999988643 245678999999999999975
No 67
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.81 E-value=1.9e-18 Score=101.41 Aligned_cols=108 Identities=30% Similarity=0.442 Sum_probs=85.2
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECCHHH
Q 032565 20 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 99 (138)
Q Consensus 20 hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~ 99 (138)
|+.+.|+|++++++||+++||++....... .....+++..++..+++....+.... ....+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~i~l~~~~~~~~~----~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLGGTRLELFEGDEPAPA----PSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecCCceEEEecCCCCCCc----ccCCCeeEEEEECCCHHH
Confidence 789999999999999999999998876542 11245566666677888766543221 234557899999999999
Q ss_pred HHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEE
Q 032565 100 LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEF 133 (138)
Q Consensus 100 ~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~ 133 (138)
+.++|+++|+.+..+ ..+.+.+++.||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 999999999988654 3467899999999999986
No 68
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.81 E-value=3e-18 Score=101.78 Aligned_cols=101 Identities=26% Similarity=0.413 Sum_probs=71.4
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEe-CCe--EEEEeecCCCCCCCCCCCCCCCCceE--E
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAE--MIHLMELPNPDPLSGRPEHGGRDRHT--C 91 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l~~~~~~~~~~~~~~~~~~~~hi--~ 91 (138)
+|+||.|.|+|++++++||+ .|||++....+ ..++.. ++. .+.+.. .. .....|+ .
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~ 62 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD-------GLELRTAGNDHRWARLLE--GA---------RKRLAYLSFG 62 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-------ceEEEecCCCceEEEeec--CC---------CCceeeEEEE
Confidence 68999999999999999997 69999865421 122333 222 222221 11 1223444 4
Q ss_pred EEECCHHHHHHHHHHCCCeEEec--CCCccEEEEECCCCCeEEEEee
Q 032565 92 IAIRDVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 92 ~~v~d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+.++|++++.++|+++|+++... ..+.+.+||.|||||.|||...
T Consensus 63 ~~~~d~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 63 IFEDDFAAFARHLEAAGVALAAAPPGADPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred eEhhhHHHHHHHHHHcCCceecCCCcCCCCEEEEECCCCCEEEEecC
Confidence 44579999999999999988644 4456789999999999999853
No 69
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.81 E-value=2.9e-18 Score=103.32 Aligned_cols=108 Identities=23% Similarity=0.308 Sum_probs=75.5
Q ss_pred eeeEEEEeCCHHHHHHHHHHh---hCCeeeccCCCCCCCeeEEEEEeC--CeEEEEeecCCCCCCCCCCCCCCCCceEEE
Q 032565 18 VHHVGILCENLERSLEFYQNI---LGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 92 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~---lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 92 (138)
++|++|.|+|+++|++||+++ ||++...... . ..+++..+ +..+.+....... +....+..|++|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~hi~f 70 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P---GAVGYGKGGGGPDFWVTKPFDGE-----PATAGNGTHVAF 70 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C---ceeEeccCCCCceEEEeccccCC-----CCCCCCceEEEE
Confidence 579999999999999999998 6888765431 1 12333332 3466665432211 111233479999
Q ss_pred EECC---HHHHHHHHHHCCCeEEec----C---CCccEEEEECCCCCeEEEEe
Q 032565 93 AIRD---VSKLKMILDKAGISYTLS----K---SGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 93 ~v~d---~~~~~~~l~~~g~~~~~~----~---~~~~~~~~~DPdG~~~e~~~ 135 (138)
.|++ ++++.++++++|+++... . .+.+++|++|||||.|||+.
T Consensus 71 ~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~~ 123 (123)
T cd07262 71 AAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAVC 123 (123)
T ss_pred ECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEeC
Confidence 9986 788899999999987543 1 23457899999999999973
No 70
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=4.7e-18 Score=101.90 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=78.6
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCC--CCCCCCceEEEEE---C
Q 032565 21 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP--EHGGRDRHTCIAI---R 95 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~hi~~~v---~ 95 (138)
|.|.|+|++++.+||+++|||++..... . ..+++..++..+.++..+........+ ..+.+..|++|.+ +
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-D----GVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEE 76 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-C----ceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHH
Confidence 6799999999999999999999876511 1 345666677777777543221111111 1222334566665 5
Q ss_pred CHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEe
Q 032565 96 DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 96 d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~ 135 (138)
|++++++++++.|+++..+ +++++.++++||+||+|||..
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 8999999999999998654 346789999999999999975
No 71
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.80 E-value=4.1e-18 Score=116.39 Aligned_cols=108 Identities=20% Similarity=0.275 Sum_probs=80.3
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 94 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 94 (138)
+.+++|+.|.|+|+++|++||+++|||+...... . ...|++.++....+....... .+..|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDSRAHRIAVHPGES---------DDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCCCceEEEEEECCc---------CCeeeEeeee
Confidence 4689999999999999999999999998765322 1 234556653322232222111 2367899999
Q ss_pred CC---HHHHHHHHHHCCCeEEec-------CCCccEEEEECCCCCeEEEEee
Q 032565 95 RD---VSKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 95 ~d---~~~~~~~l~~~g~~~~~~-------~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
++ ++++.++|+++|+++... .++++.++|.|||||.+|++..
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~ 118 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYG 118 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEc
Confidence 97 888999999999988653 2456789999999999999863
No 72
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.79 E-value=6.4e-18 Score=115.78 Aligned_cols=115 Identities=28% Similarity=0.423 Sum_probs=79.8
Q ss_pred CCceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCe--EEEEeecCCCCCCCCCCCCCCCCc
Q 032565 11 LDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDR 88 (138)
Q Consensus 11 ~~~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~ 88 (138)
+.+.+++++||+|.|+|++++++||+++||+++..............|+..+.. .+.+. . ..+.+++
T Consensus 130 ~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~ 198 (294)
T TIGR02295 130 RGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALT---N--------GNGPRLH 198 (294)
T ss_pred CCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEee---c--------CCCCcee
Confidence 446788999999999999999999999999998755332222222344443221 12211 1 1125689
Q ss_pred eEEEEECC---HHHHHHHHHHCCCe--EEecC-----CCccEEEEECCCCCeEEEEee
Q 032565 89 HTCIAIRD---VSKLKMILDKAGIS--YTLSK-----SGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 89 hi~~~v~d---~~~~~~~l~~~g~~--~~~~~-----~~~~~~~~~DPdG~~~e~~~~ 136 (138)
|+||+|+| ++++.++|++.|++ +...+ ...+++|++||+|+.||+.+.
T Consensus 199 Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 199 HIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 99999998 55568999999987 43221 134579999999999999863
No 73
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.79 E-value=7.4e-18 Score=115.13 Aligned_cols=113 Identities=15% Similarity=0.257 Sum_probs=79.6
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCC--C-CCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPH--D-KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 91 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 91 (138)
+.+|+||+|.|+|++++.+||+++|||++...... . ......+|+..++....+.....+ ...+++|++
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~~--------~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAGP--------SEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecCC--------CCCceEEEE
Confidence 57899999999999999999999999998654211 1 111235667664332222111111 125588999
Q ss_pred EEECCHHH---HHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEe
Q 032565 92 IAIRDVSK---LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 92 ~~v~d~~~---~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~ 135 (138)
|+|+|+++ +.++|+++|+....+ .++.+++|++||+|++||+.+
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGIVASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCCEEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 99998777 799999999933222 235678999999999999975
No 74
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.78 E-value=9.5e-18 Score=114.93 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=80.0
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC-C-eEEEEeecCCCCCCCCCCCCCCCCceEEE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-A-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 92 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 92 (138)
+.+++|+.|.|+|++++++||+++|||++..... ..+++... . ....+...... ..+..|++|
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~~---------~~~~~hiaf 66 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKAP---------SAALSYIGF 66 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeCC---------CcCccEEEE
Confidence 6789999999999999999999999999876533 23455432 1 11122211111 134789999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEec--CCCccEEEEECCCCCeEEEEee
Q 032565 93 AIR---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 93 ~v~---d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
.|+ |++++.++|+++|+++... +.+.+.+||+|||||.|||++.
T Consensus 67 ~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 67 RVSKEEDLDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred EeCCHHHHHHHHHHHHhcCCcEEeecCCCCceEEEEECCCCCEEEEEEc
Confidence 997 7889999999999988754 4456899999999999999863
No 75
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.76 E-value=3.2e-17 Score=112.79 Aligned_cols=105 Identities=20% Similarity=0.265 Sum_probs=78.9
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEe-CC---eEEEEeecCCCCCCCCCCCCCCCCceE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GA---EMIHLMELPNPDPLSGRPEHGGRDRHT 90 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~~~~~~~~~hi 90 (138)
+++++|+.|.|+|++++++||+++|||++..... ..+++.. ++ ..+.+. .. ...++.|+
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~------~~~~~~~~~~~~~~~~~l~--~~---------~~~g~~hi 64 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG------QRVYLKAWDEWDHYSVILT--EA---------DTAGLDHM 64 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC------ceEEEEeccccccceEeec--cC---------CCCceeEE
Confidence 5689999999999999999999999999876533 1234443 21 122221 11 12357899
Q ss_pred EEEEC---CHHHHHHHHHHCCCeEEec-----CCCccEEEEECCCCCeEEEEee
Q 032565 91 CIAIR---DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 91 ~~~v~---d~~~~~~~l~~~g~~~~~~-----~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+|.|+ +++++.++|+++|+++... .+.++.+||+||||+.|||.+.
T Consensus 65 af~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~ 118 (303)
T TIGR03211 65 AFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAE 118 (303)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEc
Confidence 99998 7889999999999988643 2346789999999999999974
No 76
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.74 E-value=2.1e-17 Score=97.76 Aligned_cols=94 Identities=26% Similarity=0.393 Sum_probs=75.9
Q ss_pred eeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC--eEEEEeecCCCCCCCCCCCCCCCCceEEEEECC
Q 032565 19 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 96 (138)
Q Consensus 19 ~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 96 (138)
+||+|.|+|+++|++||+++||++............+.+++..++ ..++|++........ ...+.+++|+||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~--~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPL--DRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHH--HHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCccc--ccCCCCEEEEEEEeCC
Confidence 699999999999999999999998876655555666788888876 589999866544211 1256889999999999
Q ss_pred HHHHHHHHHHCCCeEEec
Q 032565 97 VSKLKMILDKAGISYTLS 114 (138)
Q Consensus 97 ~~~~~~~l~~~g~~~~~~ 114 (138)
+++..++|+++|+++...
T Consensus 79 ~d~~~~~l~~~G~~~~~~ 96 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDE 96 (109)
T ss_dssp HHHHHHHHHHTTECEEEC
T ss_pred HHHHHHHHHHCCCEEccc
Confidence 999999999999998643
No 77
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.73 E-value=2e-16 Score=104.09 Aligned_cols=114 Identities=25% Similarity=0.378 Sum_probs=88.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCe-EEEEeecCCCCCCCCCCCCCCCCceEEEEE
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAI 94 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 94 (138)
+.+..+.|.|+|++.++.||+++||+++..+.. ..+-+..++. .+.|.+.+.... .+....++.|++|-+
T Consensus 9 ~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~~LL~L~q~~~a~~---~~~~~aGLyH~AfLl 79 (265)
T COG2514 9 TFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGTPLLTLEQFPDARR---PPPRAAGLYHTAFLL 79 (265)
T ss_pred cEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCEEEEEEEeCCCCCC---CCccccceeeeeeec
Confidence 458999999999999999999999999998765 3344666666 445554444332 224457889999999
Q ss_pred C---CHHHHHHHHHHCCCeEEec--CCCccEEEEECCCCCeEEEEeecC
Q 032565 95 R---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQVDG 138 (138)
Q Consensus 95 ~---d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPdG~~~e~~~~~~ 138 (138)
+ |+..+..++.+.|+.+... ......+||.||+||-||++...|
T Consensus 80 P~r~~L~~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 80 PTREDLARVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred CCHHHHHHHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEecCC
Confidence 8 5777789999999998632 557789999999999999987643
No 78
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=3.8e-16 Score=94.81 Aligned_cols=122 Identities=16% Similarity=0.271 Sum_probs=78.8
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhhCCeee--------------------ccCCCCCCCeeEEEEEeCCeEEEEeecCC
Q 032565 14 GVVSVHHVGILCENLERSLEFYQNILGLEIN--------------------EARPHDKLPYRGAWLWVGAEMIHLMELPN 73 (138)
Q Consensus 14 ~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (138)
....+.|.+++++|+.++..||.+++|+.+. ...+....+ ..+|+...+..+++....+
T Consensus 19 ~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~-~~v~~~~~~~~~ELthn~G 97 (170)
T KOG2944|consen 19 PTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHG-VSVFVFSRNAKLELTHNWG 97 (170)
T ss_pred chhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCC-CceEEecccCceeeecCCC
Confidence 3334555556666666666666555555543 333322222 2266666677777765544
Q ss_pred CCCCC--C--CCC-CCCCCceEEEEECCHHHHHHHHHHCCCeEEecCCCc---cEEEEECCCCCeEEEEee
Q 032565 74 PDPLS--G--RPE-HGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGR---PAIFTRDPDANALEFTQV 136 (138)
Q Consensus 74 ~~~~~--~--~~~-~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~~~---~~~~~~DPdG~~~e~~~~ 136 (138)
....+ + .+. .+.+.+||||+|+|++++.++|+++|+++......+ ...++.||||+.|||...
T Consensus 98 tes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 98 TESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeec
Confidence 43332 1 111 234789999999999999999999999987653322 468999999999999764
No 79
>PLN02300 lactoylglutathione lyase
Probab=99.72 E-value=3.8e-16 Score=106.77 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=85.0
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC----eEEEEeecCCCCCCCCCCCCCCCCceE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHT 90 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hi 90 (138)
...+.|+.|.|+|++++.+||+++|||+...........+..+++..++ ..+++....+. ..+..+++..|+
T Consensus 152 ~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~----~~~~~g~~~~~i 227 (286)
T PLN02300 152 PEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGV----TEYTKGNAYAQI 227 (286)
T ss_pred CCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCC----CccccCCceeEE
Confidence 4578999999999999999999999999875433223334445554322 13443321111 112234667799
Q ss_pred EEEECCHHHHHHHHHHCCCeEEec----CC-CccEEEEECCCCCeEEEEeec
Q 032565 91 CIAIRDVSKLKMILDKAGISYTLS----KS-GRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 91 ~~~v~d~~~~~~~l~~~g~~~~~~----~~-~~~~~~~~DPdG~~~e~~~~~ 137 (138)
+|.|+|++++.++++++|+++..+ ++ +++.++|.||||+.++|++..
T Consensus 228 ~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 228 AIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred EEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 999999999999999999988654 22 247889999999999999854
No 80
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.69 E-value=3.8e-15 Score=88.89 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=80.4
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeE-EEEeecCCCCCCCCCCCCCCCCceEEEE
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEM-IHLMELPNPDPLSGRPEHGGRDRHTCIA 93 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 93 (138)
..-+.|..|.++|++++++||+++|||+.......... ..+.+..++.. .-.+ ..... .++ ++....+.|.
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~--~y~~f~~~~~~~gG~l-~~~~~----~~p-~~~~~~iy~~ 78 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEM--RYAVFPADGAGAGGGL-MARPG----SPP-GGGGWVIYFA 78 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCc--eEEEEECCCcccccee-ccCCc----CCC-CCCCEEEEEe
Confidence 34588999999999999999999999998876443222 22223222211 1111 11110 111 1334578888
Q ss_pred ECCHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEeec
Q 032565 94 IRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
|+|+++..++.++.|.++..+ +++++.+.+.||+||+|.|.++.
T Consensus 79 v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 79 VDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred cCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 999999999999999998765 55889999999999999998764
No 81
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.64 E-value=8e-15 Score=85.73 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=82.8
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCC---CCCCCCceEEEE
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP---EHGGRDRHTCIA 93 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~hi~~~ 93 (138)
.+-.|+|.|+|++++++||.. |||+......+.. ....+..++....|............+ .....-.-+++.
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls 78 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLS 78 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEec
Confidence 456789999999999999997 9999988766443 233344455555555433222211111 123444678888
Q ss_pred EC---CHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEeecC
Q 032565 94 IR---DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQVDG 138 (138)
Q Consensus 94 v~---d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~~~~ 138 (138)
+. ++|++.++..+.|.++..+ .+..+...|+|||||.||+...+|
T Consensus 79 ~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 79 AGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred cCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeCH
Confidence 86 6888999999999988543 456678899999999999987654
No 82
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.59 E-value=7.9e-14 Score=80.42 Aligned_cols=113 Identities=24% Similarity=0.355 Sum_probs=74.2
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCC--CCCCCceE--EE
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPE--HGGRDRHT--CI 92 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~hi--~~ 92 (138)
.+-|+++.|+|++++++||.++||++.-...+ ..+.+.+=+.++.....+.+......+. +.-...|+ .+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvVl 77 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVVL 77 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEEE
Confidence 36789999999999999999999998765433 2333333123333222222221111111 11223355 45
Q ss_pred EECCHHHHHHHHHHCCCeEEec--------CCCccEEEEECCCCCeEEEEe
Q 032565 93 AIRDVSKLKMILDKAGISYTLS--------KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 93 ~v~d~~~~~~~l~~~g~~~~~~--------~~~~~~~~~~DPdG~~~e~~~ 135 (138)
.++|--++.++|+++|+....+ ++.++.+++.||.||.+|+..
T Consensus 78 ~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 78 PVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred EHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeec
Confidence 5678889999999999877533 557789999999999999864
No 83
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.54 E-value=9.9e-14 Score=89.64 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=70.4
Q ss_pred eeeeeEEEEeC--CHHHHHHHHHHhhCCeeeccCCCCC--CCeeEEEEEeC--CeEEEEeecCCCCCCC--C---CCCCC
Q 032565 16 VSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWVG--AEMIHLMELPNPDPLS--G---RPEHG 84 (138)
Q Consensus 16 ~~l~hi~l~v~--d~~~a~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~~~--~~~~~l~~~~~~~~~~--~---~~~~~ 84 (138)
.+++||++.|+ |++++.+||+++|||+......... .......+..+ ...+.|.......... . ....+
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G 81 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGG 81 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCC
Confidence 57999999999 9999999999999999876544222 23344555553 3566676543321110 0 01135
Q ss_pred CCCceEEEEECCHHHHHHHHHHCCCeEEe
Q 032565 85 GRDRHTCIAIRDVSKLKMILDKAGISYTL 113 (138)
Q Consensus 85 ~~~~hi~~~v~d~~~~~~~l~~~g~~~~~ 113 (138)
.+++|+||.|+|+++++++|+++|+++..
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~ 110 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRARGVEFLP 110 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHHcCCeecc
Confidence 78899999999999999999999998854
No 84
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.52 E-value=1.6e-12 Score=78.99 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=75.3
Q ss_pred EEEe-CCHHHHHHHHHHhhCCeeeccCCC----------CCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceE
Q 032565 22 GILC-ENLERSLEFYQNILGLEINEARPH----------DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 90 (138)
Q Consensus 22 ~l~v-~d~~~a~~fy~~~lg~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi 90 (138)
.|.+ .|.++|++||+++||+++...... .......+.+++++..+.+......... ..+...++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~-----~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPF-----TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCC-----CCCCCEEE
Confidence 4666 899999999999999998865431 1122345667888887777654322211 12334678
Q ss_pred EEEECC---HHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEE
Q 032565 91 CIAIRD---VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 91 ~~~v~d---~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~ 134 (138)
++.|+| +++++++|.+.| ++..+ +++.+..+++||+|+.|+|.
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEeC
Confidence 999886 667789987777 55433 56888999999999999873
No 85
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.46 E-value=1.6e-11 Score=74.52 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=82.9
Q ss_pred EEEeC-CHHHHHHHHHHhhCCeeeccCCCCC----------CCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceE
Q 032565 22 GILCE-NLERSLEFYQNILGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 90 (138)
Q Consensus 22 ~l~v~-d~~~a~~fy~~~lg~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi 90 (138)
-|..+ |-++|.+||+++||.+......... .....+.+.+++..+.+........ ....++....+
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~---~~~~~~~s~~l 81 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMG---ATEGGGTSLSL 81 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccC---cccCCCeeEEE
Confidence 36677 9999999999999999887655444 3445667888877766654322221 11112233467
Q ss_pred EEEECCHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEeec
Q 032565 91 CIAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 91 ~~~v~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
.+.++|++++.+++.+.|+++..+ .+|.++..++||.|+.|.|.+..
T Consensus 82 ~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 82 DLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCc
Confidence 777789999999999999887655 77999999999999999998653
No 86
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.41 E-value=3.9e-12 Score=89.44 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=73.1
Q ss_pred cCCceeeeeeeEEEEeC--CHHHHHHHHHHhhCCeeeccCCC--CCCCeeEEEEEe--CCeEEEEeecCCCCCCCC----
Q 032565 10 CLDYGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPH--DKLPYRGAWLWV--GAEMIHLMELPNPDPLSG---- 79 (138)
Q Consensus 10 ~~~~~~~~l~hi~l~v~--d~~~a~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~---- 79 (138)
...+.+.+++||++.|+ |++++++||+++|||+....... .........+.. ++..++|...........
T Consensus 151 ~~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~f 230 (353)
T TIGR01263 151 PPGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEF 230 (353)
T ss_pred CCCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHH
Confidence 34677899999999999 99999999999999988754331 111222223333 345677765322111110
Q ss_pred -CCCCCCCCceEEEEECCHHHHHHHHHHCCCeEEec
Q 032565 80 -RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 114 (138)
Q Consensus 80 -~~~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~ 114 (138)
....+.+++|+||.|+|+++++++|+++|+++..+
T Consensus 231 l~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~ 266 (353)
T TIGR01263 231 LEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDT 266 (353)
T ss_pred HHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcC
Confidence 11135788999999999999999999999987643
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.40 E-value=1.9e-11 Score=85.94 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=71.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCC--CCCCCCCCceEEEE
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIA 93 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~~~ 93 (138)
++++|+.+.|+|++++.+||.+.|||+.......... .....++.|+..+.+........... ...++.+..|++|.
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~-~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~ 79 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHRE-KASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFR 79 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCc-eeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEE
Confidence 3689999999999999999999999998875221111 12333566777888875543321111 11356788999999
Q ss_pred ECCHHHHHHHHHHCCCeEEec
Q 032565 94 IRDVSKLKMILDKAGISYTLS 114 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~~ 114 (138)
|+|+++++++++++|+++..+
T Consensus 80 V~Dv~~a~~~l~~~Ga~~v~~ 100 (353)
T TIGR01263 80 VDDAAAAFEAAVERGAEPVQA 100 (353)
T ss_pred ECCHHHHHHHHHHCCCEeccC
Confidence 999999999999999988543
No 88
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.35 E-value=4.3e-12 Score=76.38 Aligned_cols=120 Identities=22% Similarity=0.285 Sum_probs=71.3
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCe---eEEEEEeCCeEEEEeecC-------CCCCC-CCCCCCC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY---RGAWLWVGAEMIHLMELP-------NPDPL-SGRPEHG 84 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~-------~~~~~-~~~~~~~ 84 (138)
+++.|++|.|+|+++|++||+++||++............ ...+.............. ..... .......
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 368999999999999999999999999988755332211 111111110000110000 00000 0000011
Q ss_pred --CCCceEEEEECC---HHHHHHHHHHCCCeEEecC--CCccEEEEECCCCCeEEEEe
Q 032565 85 --GRDRHTCIAIRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 85 --~~~~hi~~~v~d---~~~~~~~l~~~g~~~~~~~--~~~~~~~~~DPdG~~~e~~~ 135 (138)
.+..|+++.+++ .......+...|..+.... .....+|++||||+.+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEPGRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecCCCcceEEEEECCCCcEEEeeC
Confidence 246799999997 5666666666777764431 12228999999999999974
No 89
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=99.26 E-value=1.1e-10 Score=80.35 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=69.2
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEEC-
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 95 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~- 95 (138)
+.-||+|.|+|+++|++||+++|++.. ...+ .. .-+ ++..+.+..... +. ....-.-+|+.++
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde--~a----~cm--~dtI~vMllt~~-D~------~~~~evLl~Ls~~S 310 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD--KL----FLL--GKTSLYLQQTKA-EK------KNRGTTTLSLELEC 310 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC--cc----ccc--cCcEEEEEecCC-CC------CCcceEEEEeccCC
Confidence 467999999999999999999988874 3221 11 112 444444433322 11 1122356889887
Q ss_pred --CHHHHHHHHHHCCCeEEec--CCCccEEEEECCCCCeEEEEee
Q 032565 96 --DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 96 --d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
++|++.++..+.|.+...+ ..|. .-.|+|||||.||++..
T Consensus 311 re~VD~lv~~A~aaGG~~~~~~~D~Gf-~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 311 EHDFVRFLRRWEMLGGELGEQADGHFP-LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcccccC-cceeECCCCCEEEEEEE
Confidence 5888899999998865333 2233 78899999999999853
No 90
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.23 E-value=7.9e-11 Score=83.20 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=73.8
Q ss_pred CceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCC-----CCCCeeEEEEEeCC--eEEEEeecCCC---CCCCC--
Q 032565 12 DYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPH-----DKLPYRGAWLWVGA--EMIHLMELPNP---DPLSG-- 79 (138)
Q Consensus 12 ~~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~l~~~~~~---~~~~~-- 79 (138)
...+.+|+||++.|++++.+..||+++|||+....... ...+.+...+..++ ..+.|...... .....
T Consensus 175 ~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eF 254 (398)
T PLN02875 175 DYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTY 254 (398)
T ss_pred CCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHH
Confidence 34477999999999999999999999999988754332 12234566666654 56777654321 11111
Q ss_pred -CCCCCCCCceEEEEECCHHHHHHHHHHC----CCeEEe
Q 032565 80 -RPEHGGRDRHTCIAIRDVSKLKMILDKA----GISYTL 113 (138)
Q Consensus 80 -~~~~~~~~~hi~~~v~d~~~~~~~l~~~----g~~~~~ 113 (138)
....++|++||||.|+||.++.++|+++ |+++..
T Consensus 255 L~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~ 293 (398)
T PLN02875 255 LEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMP 293 (398)
T ss_pred HHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCC
Confidence 1123589999999999999999999999 998754
No 91
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=2.9e-10 Score=73.96 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=78.3
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCC-----------CCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHG 84 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (138)
.++-|+.+.|-|..+++.||+++||+++........ ......++..|...-+|..--..+-......-+
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~YelG 95 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYELG 95 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceecc
Confidence 467899999999999999999999999876543322 222234455543322222211122222344556
Q ss_pred CCCceEEEEECCHHHHHHHHHHCCCeEEecCCCccEEEEECCCCCeEEEEeec
Q 032565 85 GRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 85 ~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
....|+.+.++|+-...+.++..|.+ ..+.-.+++.||||+.|++.+..
T Consensus 96 ndfg~i~I~s~dv~~~ve~v~~p~~~----~~g~~~~~v~dPdGykF~l~~~~ 144 (299)
T KOG2943|consen 96 NDFGGITIASDDVFSKVEKVNAPGGK----GSGCGIAFVKDPDGYKFYLIDRG 144 (299)
T ss_pred CCcccEEEeHHHHHHHHHHhcCcCCc----ccceEEEEEECCCCcEEEEeccC
Confidence 77889999988888877777665542 23444678899999999998643
No 92
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=99.08 E-value=2.9e-10 Score=72.60 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=58.7
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCC--CCC------CCCCCCce
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS--GRP------EHGGRDRH 89 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~------~~~~~~~h 89 (138)
|+|+.+.|+|++++.++|.+.|||.+.....+...+...+.+.+++.+++++...+..... ... ..+.++..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6899999999999999997789999998777666566666677777799999865332211 111 14577889
Q ss_pred EEEEECCHHHHHHHHHHCCCe
Q 032565 90 TCIAIRDVSKLKMILDKAGIS 110 (138)
Q Consensus 90 i~~~v~d~~~~~~~l~~~g~~ 110 (138)
+|+.++|+++..++|++.|+.
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-E
T ss_pred EEEecCCHHHHHHHHHhcCCC
Confidence 999999999999999999975
No 93
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=2e-09 Score=70.11 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=73.2
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC--eEEEEeecCCCCCCCCCCCCCCCCceEEEEE
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 94 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 94 (138)
.+..|.|.|.|+++++.||.+.||+++....... ..+.+..++ +.+++....+.... ..+...++|.+
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilekeek~----t~~~mgYgd~q~~LElt~~~~~id~------~kg~griafai 218 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEKEEKY----TRARMGYGDEQCVLELTYNYDVIDR------AKGFGRIAFAI 218 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhhhhhh----hhhhhccCCcceEEEEEeccCcccc------cccceeEEEec
Confidence 5889999999999999999999999998853321 223344443 45666544433211 13345566666
Q ss_pred --CCHHHHHHHHHHCCCeEE----ec--C--CCccEEEEECCCCCeEEEEe
Q 032565 95 --RDVSKLKMILDKAGISYT----LS--K--SGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 95 --~d~~~~~~~l~~~g~~~~----~~--~--~~~~~~~~~DPdG~~~e~~~ 135 (138)
+++..+.+..+..+.++. .. + .....+.+.||||+.+.|+-
T Consensus 219 p~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVd 269 (299)
T KOG2943|consen 219 PTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVD 269 (299)
T ss_pred cccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEec
Confidence 478888888888755442 21 2 23457889999999998874
No 94
>PRK10148 hypothetical protein; Provisional
Probab=99.03 E-value=8e-08 Score=59.65 Aligned_cols=109 Identities=14% Similarity=0.038 Sum_probs=72.1
Q ss_pred EEEeC-CHHHHHHHHHHhhCCeeeccCC-----C---------------CCCCeeEEEEEeCCeEEEEeecCCCCCCCCC
Q 032565 22 GILCE-NLERSLEFYQNILGLEINEARP-----H---------------DKLPYRGAWLWVGAEMIHLMELPNPDPLSGR 80 (138)
Q Consensus 22 ~l~v~-d~~~a~~fy~~~lg~~~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (138)
-|..+ |-++|.+||+++||.++..... . .......+.+++++..+.+.......
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~----- 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG----- 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc-----
Confidence 34554 8999999999999988753311 0 11234467788887766554321111
Q ss_pred CCCCCCCceEEEEECCHHH---HHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEeec
Q 032565 81 PEHGGRDRHTCIAIRDVSK---LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 81 ~~~~~~~~hi~~~v~d~~~---~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
+.. ....++++.++|.++ +.++| +.|.++..+ .++.+...++||.|+.|.|...+
T Consensus 81 ~~~-~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~~ 142 (147)
T PRK10148 81 KAH-YSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVVK 142 (147)
T ss_pred CCC-CCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEecC
Confidence 111 124678888888776 56666 467776544 66888999999999999997643
No 95
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.01 E-value=6.4e-09 Score=69.05 Aligned_cols=97 Identities=23% Similarity=0.276 Sum_probs=65.3
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCC-CCCCCCCCCCCCceEEEEE
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD-PLSGRPEHGGRDRHTCIAI 94 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~hi~~~v 94 (138)
+.|+||.|.|.|+++|.+||+++|||+.....+ ...|+..|+...++....-.. ..........++..+.+.+
T Consensus 167 t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~i~~ 240 (265)
T COG2514 167 TIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGARPRNANASGLAWLEIHT 240 (265)
T ss_pred cEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccccCCCCCCCCCCCCcceEEEEc
Confidence 469999999999999999999999999998733 447788888766664422111 1111223446677888888
Q ss_pred CCHHHHHHHHHHCCCeEEecCCCccEEEEECCCCCeEEEE
Q 032565 95 RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e~~ 134 (138)
++-..+....... .||.|+.+.+.
T Consensus 241 ~~~~~l~~~~~~~----------------~Dp~G~~i~~~ 264 (265)
T COG2514 241 PDPEKLDATGTRL----------------TDPWGIVIRVV 264 (265)
T ss_pred CCcccccccccce----------------ecCCCceEEEe
Confidence 7644332111111 89999988774
No 96
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.79 E-value=3.3e-08 Score=66.98 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=72.5
Q ss_pred cCCceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCC--eeEEEEEeCCeEEEEeecCCCCCC---CCCCCCC
Q 032565 10 CLDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLP--YRGAWLWVGAEMIHLMELPNPDPL---SGRPEHG 84 (138)
Q Consensus 10 ~~~~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~ 84 (138)
+..-++..++||.+.|.|...++.||+..|||++....+..... ....-++.|+..+.+.....+... ...+.++
T Consensus 10 ~~~g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hg 89 (381)
T KOG0638|consen 10 PEAGKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHG 89 (381)
T ss_pred ccccceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcc
Confidence 33446789999999999999999999999999987644221111 111224445554444433333221 1223567
Q ss_pred CCCceEEEEECCHHHHHHHHHHCCCeEEec
Q 032565 85 GRDRHTCIAIRDVSKLKMILDKAGISYTLS 114 (138)
Q Consensus 85 ~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~ 114 (138)
.+..-+||+|+|++++...+.++|+++..+
T Consensus 90 dgvkdvafeVeD~da~~~~~va~Ga~v~~~ 119 (381)
T KOG0638|consen 90 DGVKDVAFEVEDADAIFQEAVANGAKVVRP 119 (381)
T ss_pred cchhceEEEecchHHHHHHHHHcCCcccCC
Confidence 778899999999999999999999988654
No 97
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.75 E-value=9.3e-08 Score=58.44 Aligned_cols=121 Identities=11% Similarity=0.028 Sum_probs=75.3
Q ss_pred CCceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceE
Q 032565 11 LDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 90 (138)
Q Consensus 11 ~~~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi 90 (138)
.++.+.++.+|.+.+++.+++..|++ .|||+........ ....++-|+..+-+-..++.........++.+..-+
T Consensus 3 nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk----~v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 3 NPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK----DVTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp -TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC----SEEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc----ceEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 35788999999999999888888886 5999998764322 233456677776664422111000112356778889
Q ss_pred EEEECCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEee
Q 032565 91 CIAIRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 91 ~~~v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+|+|+|.++++++..++|.+.... ......--++-+.|.++-|++.
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr 126 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDR 126 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE-
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEec
Confidence 999999999999999999987543 2223334556666666666653
No 98
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.73 E-value=1.5e-06 Score=51.11 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=60.4
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEe--CCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECCH
Q 032565 20 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV--GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 97 (138)
Q Consensus 20 hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~ 97 (138)
+-.|.|+|-+...+||+++|||++..... ..+++.. +...+.+-..+....+ .-....-+.++.+.|++-
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr--~V~G~KKl~~ivIkv~~~ 74 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTR--AVEGPKKLNRIVIKVPNP 74 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B----SSS-SEEEEEEEESSH
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccc--cccCcceeeEEEEEcCCH
Confidence 45789999999999999999999987644 2233433 2235555444433211 111223467899999987
Q ss_pred HHHHHHHHHCCCeEEec--CCCccEEEEECCCCCeEEEEee
Q 032565 98 SKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 98 ~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
.++.+- .++|.++... ...++.|-..+|+|..|.+...
T Consensus 75 ~EIe~L-Lar~~~~~~l~kg~~gyAfe~vSPEgd~~llhaE 114 (125)
T PF14506_consen 75 KEIEAL-LARGAQYDRLYKGKNGYAFEAVSPEGDRFLLHAE 114 (125)
T ss_dssp HHHHHH-HHC-S--SEEEE-SSSEEEEEE-TT--EEEEE--
T ss_pred HHHHHH-HhcccccceeEEcCCceEEEEECCCCCEEEEEEc
Confidence 665443 3555554332 4567788889999999998754
No 99
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.64 E-value=1.7e-06 Score=61.57 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=77.5
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCC--CCCCeeEEEEEeCCeEEEEeecCCCCC------------CC---C-
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPH--DKLPYRGAWLWVGAEMIHLMELPNPDP------------LS---G- 79 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~---~- 79 (138)
++||.++|.|...+..||...|||+....... .........++.|+..+.+-....+.. .+ .
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 58999999999999999999999988765442 111122334555666666654422200 00 0
Q ss_pred -----CCCCCCCCceEEEEECCHHHHHHHHHHCCCeEEecCC-------C--ccEEEEECCCCCeEEEEe
Q 032565 80 -----RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS-------G--RPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 80 -----~~~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~-------~--~~~~~~~DPdG~~~e~~~ 135 (138)
...++.+..-++|+|+|++++++++.++|.+...++. . ....-+.-++|..+-|++
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVd 150 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVS 150 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEc
Confidence 0136678889999999999999999999988754311 1 122335566666666655
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.54 E-value=2.7e-07 Score=63.55 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=69.1
Q ss_pred ceeeeeeeEEEEe--CCHHHHHHHHHHhhCCeeeccCC--CCCCCeeEEEEEeCCe--EEEEeecCCCCCCCCC---CCC
Q 032565 13 YGVVSVHHVGILC--ENLERSLEFYQNILGLEINEARP--HDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGR---PEH 83 (138)
Q Consensus 13 ~~~~~l~hi~l~v--~d~~~a~~fy~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~---~~~ 83 (138)
..+..|+|++..| ..++.+..||+++|+|+.....+ .........-+..... ++.|-...+..+.... .-.
T Consensus 163 ~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~ 242 (363)
T COG3185 163 VGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYR 242 (363)
T ss_pred cCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhC
Confidence 4567899999876 59999999999999998876543 3333444444555333 3333222221111111 125
Q ss_pred CCCCceEEEEECCHHHHHHHHHHCCCeEEe
Q 032565 84 GGRDRHTCIAIRDVSKLKMILDKAGISYTL 113 (138)
Q Consensus 84 ~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~ 113 (138)
+.+++||+|.++||-++.++|+++|+++.+
T Consensus 243 G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ 272 (363)
T COG3185 243 GEGIQHIAFGTDDIYATVAALRERGVKFLP 272 (363)
T ss_pred CCcceEEEecccHHHHHHHHHHHcCCccCC
Confidence 788999999999999999999999998743
No 101
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.02 E-value=0.00016 Score=50.23 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=75.1
Q ss_pred cCCceeeeeeeEEEEeCCH-HHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCc
Q 032565 10 CLDYGVVSVHHVGILCENL-ERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDR 88 (138)
Q Consensus 10 ~~~~~~~~l~hi~l~v~d~-~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (138)
.-++...++.+|.+.|.|. ++..+++. .|||.......... ..-++-|+..+-+-..+..........++++..
T Consensus 15 ~~P~~~~GfeFvEf~~~d~~~~l~~l~~-~lGF~~~~~Hrsk~----v~l~rQGdinlvvn~~~~s~a~~f~~~Hgps~~ 89 (363)
T COG3185 15 ANPEGTDGFEFVEFAVPDPQEALGALLG-QLGFTAVAKHRSKA----VTLYRQGDINLVVNAEPDSFAAEFLDKHGPSAC 89 (363)
T ss_pred cCCCCCCceeEEEEecCCHHHHHHHHHH-HhCccccccccccc----eeEEEeCCEEEEEcCCCcchhhHHHHhcCCchh
Confidence 3445578999999999999 55555555 59998876544221 122344665555443332211111224677778
Q ss_pred eEEEEECCHHHHHHHHHHCCCeEEec-------------CCCccEEEEECCCC
Q 032565 89 HTCIAIRDVSKLKMILDKAGISYTLS-------------KSGRPAIFTRDPDA 128 (138)
Q Consensus 89 hi~~~v~d~~~~~~~l~~~g~~~~~~-------------~~~~~~~~~~DPdG 128 (138)
-++|.|+|...+.++.++.|.+.... ..|+...||-|.+|
T Consensus 90 a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 90 AMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred eeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 89999999999999999999854321 23667788888873
No 102
>PF15067 FAM124: FAM124 family
Probab=97.86 E-value=0.00025 Score=46.62 Aligned_cols=111 Identities=19% Similarity=0.272 Sum_probs=64.5
Q ss_pred ceeccCCceeee---------eeeEEEEeC--CHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEe---CCeEEE--Ee
Q 032565 6 LFHICLDYGVVS---------VHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV---GAEMIH--LM 69 (138)
Q Consensus 6 ~~~~~~~~~~~~---------l~hi~l~v~--d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~---~~~~~~--l~ 69 (138)
.|...+.|.+.+ +-.++|+|+ |++.+++||+-+|+-+...... +..++.. .+..+. +-
T Consensus 108 fysl~~~~PlWavr~VH~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~------~FC~F~lys~~~~~iQlsLK 181 (236)
T PF15067_consen 108 FYSLDPGMPLWAVRQVHYGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE------DFCFFTLYSQPGLDIQLSLK 181 (236)
T ss_pred ceecCCCCceeEEeeeeccccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC------CcEEEEEecCCCeEEEEEec
Confidence 455566665543 445678888 9999999999999988766544 2222222 233333 32
Q ss_pred ecCCCCCCCCCCCCCCCCceEEEEECCHHHHHHHHHHCCCeEEecCCCccEEEEECCCCCeEE
Q 032565 70 ELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 132 (138)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e 132 (138)
+.+.. ....| ....-+.|.|.|+.++..-|-.--.++... .--.+|||||.|=
T Consensus 182 ~lp~~--~~p~p---~esavLqF~V~~igqLvpLLPnpc~PIS~~-----rWqT~D~DGNkIL 234 (236)
T PF15067_consen 182 QLPPG--MSPEP---TESAVLQFRVEDIGQLVPLLPNPCSPISET-----RWQTEDYDGNKIL 234 (236)
T ss_pred cCCCC--CCccc---ccceEEEEEecchhhhcccCCCCcccccCC-----cceeeCCCCCEec
Confidence 22111 11111 223469999999999866553322222222 2345899999874
No 103
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.86 E-value=0.0015 Score=38.90 Aligned_cols=96 Identities=21% Similarity=0.193 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHhhCCeeecc---CCC----CCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECCHH
Q 032565 26 ENLERSLEFYQNILGLEINEA---RPH----DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 98 (138)
Q Consensus 26 ~d~~~a~~fy~~~lg~~~~~~---~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~ 98 (138)
.+-++|.+||.++||-..... .+. .......+.+.+++..+......... + . +...++++.++|.+
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~~-----~-~-~~~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPDF-----P-F-GNNISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS-----------TTEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCCC-----C-C-CCcEEEEEEcCCHH
Confidence 689999999999999533221 111 12233456778888877665544111 1 1 22367888888654
Q ss_pred ---HHHHHHHHCCCeEEecCCCccEEEEECCCCCeEEEE
Q 032565 99 ---KLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 99 ---~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e~~ 134 (138)
.+.++|.+.|- +.. +.-.+.|-.|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~-----~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ-----WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE-----TCC-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC-----ccc-eeEEEEeCCCCEEEeC
Confidence 55788877665 333 7889999999999885
No 104
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.81 E-value=1.9e-05 Score=53.95 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=68.7
Q ss_pred CCceeeeeeeEEEEeC--CHHHHHHHHHHhhCCeeeccCCCCCCCee-----EEEEEeCCeEEEEeecCCCCCCCCC---
Q 032565 11 LDYGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYR-----GAWLWVGAEMIHLMELPNPDPLSGR--- 80 (138)
Q Consensus 11 ~~~~~~~l~hi~l~v~--d~~~a~~fy~~~lg~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~--- 80 (138)
+.+.+..++|++..++ .++.+.+||.+.|||.-.+..++...... ..-+...+..+.+ ....+.+....
T Consensus 172 ~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~m-pinEp~~G~k~ksQ 250 (381)
T KOG0638|consen 172 PKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKM-PINEPAPGKKKKSQ 250 (381)
T ss_pred CccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEE-eccCCCCCCccHHH
Confidence 3467889999999999 77899999999999987776654332111 1112222223332 22222211111
Q ss_pred ------CCCCCCCceEEEEECCHHHHHHHHHHCCCeEEec
Q 032565 81 ------PEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 114 (138)
Q Consensus 81 ------~~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~ 114 (138)
+..+.+++|+++.++||-++.+.|+++|.++..+
T Consensus 251 Iqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~ 290 (381)
T KOG0638|consen 251 IQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSP 290 (381)
T ss_pred HHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccC
Confidence 1256789999999999999999999999988543
No 105
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=97.28 E-value=0.0015 Score=38.25 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=39.2
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEec----CCCccEEEEECCCC-CeEEEEeec
Q 032565 88 RHTCIAIRDVSKLKMILDK-AGISYTLS----KSGRPAIFTRDPDA-NALEFTQVD 137 (138)
Q Consensus 88 ~hi~~~v~d~~~~~~~l~~-~g~~~~~~----~~~~~~~~~~DPdG-~~~e~~~~~ 137 (138)
.|++|.|+|++++.+.+.+ .|+..... ..+.+..++..++| ..||++++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~ 56 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPL 56 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeC
Confidence 5999999999999999998 89876433 33456677888888 689999874
No 106
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.89 E-value=0.0039 Score=35.98 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=40.8
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEEC--
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 95 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~-- 95 (138)
+..+.|.|+| +++.+||+++||-.. ...+.+.+..++.-...... .=.+-.+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~-------------------~~~l~f~ea~G~DL~~~~~~-twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQL-------------------PFFLTFQEAQGPDLTIENNE-TWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHH-------------------TTTEEEEE---CCGSS-TTS-BSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCC-------------------CceEEEeeccCCccccCCCc-EEeeEEEEEEecCc
Confidence 6678999999 889999999886221 11233333333221111111 112456778887
Q ss_pred -CHHHHHHHHHHCCCeEEecCCCccEEEEECCCCCeE
Q 032565 96 -DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANAL 131 (138)
Q Consensus 96 -d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~ 131 (138)
|+.++.+++.+.+. -- +-..+.+.+.||.|+.|
T Consensus 65 ~Dl~~L~~~le~~~~--fi-dKk~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 65 FDLAALKSHLEEQEF--FI-DKKEKFLVTSDPSQIEL 98 (101)
T ss_dssp --HHHHHHHTTTS-E--E---TT-SEEEEE-TTS-EE
T ss_pred ccHHHHHHHhcccce--Ee-cCCceEEEEECCcceEE
Confidence 78888999888332 11 33566889999999865
No 107
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=96.27 E-value=0.038 Score=34.53 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=37.4
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC-eEEEEe
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLM 69 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 69 (138)
++++||+|.|+|+.+|.+-+++ .|.+.......... -..+|+.-.+ ..+++.
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~dGk~-K~iaF~~dpDgywiei~ 166 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLKDGKM-KPIAFLHDPDGYWIEIE 166 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCCCccc-cceeEEECCCCCeEEEe
Confidence 7899999999999999999998 99996665443332 3456665543 355554
No 108
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=95.87 E-value=0.066 Score=32.55 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=36.4
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeC-CeEEEEee
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLME 70 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 70 (138)
.++.|+++.|.|++++.+..++ .|.++.........+.+.++++-. +..++|++
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 4688999999999999999998 798877643222223344455442 34566654
No 109
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=95.26 E-value=0.25 Score=29.96 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=43.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEe-CCeEEEEeecCCC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNP 74 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 74 (138)
.++.|+.+.|+|++++.+-.++ .|.++.........+.+.++++- ++..++|++....
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCC
Confidence 4688999999999999999987 89998865443344445566655 4568888886554
No 110
>PLN02367 lactoylglutathione lyase
Probab=95.17 E-value=0.21 Score=33.55 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=40.0
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEe-CCeEEEEeecCC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPN 73 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 73 (138)
.+++|+++.|.|++++.+..++ .|.++...... ......+|++- ++..+++++...
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~-g~~~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPND-GKMKGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCcc-CCceEEEEEECCCCCEEEEEeccc
Confidence 4799999999999999999987 99998753322 21123455544 456888886543
No 111
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=94.75 E-value=0.054 Score=34.52 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=28.1
Q ss_pred CceEEEEECCHHHHHHHH-HHCCCeEEec---CC-CccEEEEECCCCCeEEEEeec
Q 032565 87 DRHTCIAIRDVSKLKMIL-DKAGISYTLS---KS-GRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l-~~~g~~~~~~---~~-~~~~~~~~DPdG~~~e~~~~~ 137 (138)
+.|+.+.|+|++++.+++ ++.|.++... +. |.....+.=++| .+||+..+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~-YlEli~i~ 55 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG-YLELIAID 55 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS-EEEEEEES
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc-eEEEEEeC
Confidence 369999999999999999 7789988765 22 444443333677 99998754
No 112
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=94.73 E-value=0.3 Score=28.75 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=26.4
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEAR 47 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~ 47 (138)
.++.|+.+.|+|++++.+...+ .|.++....
T Consensus 71 ~g~~h~~f~v~d~~~~~~~l~~-~G~~~~~~~ 101 (128)
T cd07249 71 EGLHHIAFEVDDIDAALARLKA-QGVRLLQEG 101 (128)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeeeccC
Confidence 5689999999999999999987 788877643
No 113
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=94.42 E-value=0.38 Score=30.11 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=34.4
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEEC-CCCCeEEEEee
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRD-PDANALEFTQV 136 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~D-PdG~~~e~~~~ 136 (138)
++.|+++.|.|+++..+-+++ .|.+......+...++..+ .++..+++.+.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGDRVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCCEEEEEecCCCCCCEEEEEeC
Confidence 468999999999999999977 5987765432222222222 24778888764
No 114
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.39 E-value=0.54 Score=27.37 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=34.8
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEEec---CC-CccEEEEECCCCCeEEEEe
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYTLS---KS-GRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~---~~-~~~~~~~~DPdG~~~e~~~ 135 (138)
++.|+++.|+|++++.+.+++ .|..+... .. ....+.+..+++..+++..
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 57 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFS 57 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEE
Confidence 478999999999999999986 79887643 11 1222344455666777764
No 115
>PRK11478 putative lyase; Provisional
Probab=94.39 E-value=0.51 Score=27.94 Aligned_cols=29 Identities=3% Similarity=0.306 Sum_probs=24.7
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeec
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINE 45 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~ 45 (138)
.++.|+++.|.|++++.+-.++ .|.++..
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~ 102 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEA 102 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeec
Confidence 4688999999999999998877 7988754
No 116
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=94.01 E-value=0.33 Score=26.98 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEe
Q 032565 96 DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 96 d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+.+++.+.+++.|+.+..- .++.+.+...|.||..+|+.-
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYV 72 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEE
Confidence 7899999999999976532 556788999999999999864
No 117
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=93.79 E-value=0.61 Score=29.30 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=37.3
Q ss_pred CCCceEEEEECCHHHHHHHHHH-CCCeEEe------cC------------C----CccEEEEECCCCCeEEEEeec
Q 032565 85 GRDRHTCIAIRDVSKLKMILDK-AGISYTL------SK------------S----GRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 85 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~~------~~------------~----~~~~~~~~DPdG~~~e~~~~~ 137 (138)
.++.|+++.|.|+++..+-.++ .|.++.. .. + ..+..++..++|..+|+++..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 3478999999999999999977 6876531 00 0 023345666778889998754
No 118
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.59 E-value=0.67 Score=27.38 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=32.9
Q ss_pred CCceEEEEECCHHHHHHHHHHC----CCeEEecCCCccEEEEECCCCCeEEEEee
Q 032565 86 RDRHTCIAIRDVSKLKMILDKA----GISYTLSKSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~~----g~~~~~~~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
++.|+.+.|.|++++.+-+.+. |.+....... ...|+...++..+++.+.
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~i~l~~~ 54 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-GRSWRAGDGGTYLVLQQA 54 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-CceEEecCCceEEEEEec
Confidence 3689999999999999988875 8877654221 223333234556666543
No 119
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=93.57 E-value=0.82 Score=26.67 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=35.7
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEEec---CC--CccEEEEECC---CCCeEEEEee
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYTLS---KS--GRPAIFTRDP---DANALEFTQV 136 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~---~~--~~~~~~~~DP---dG~~~e~~~~ 136 (138)
++.|+++.|+|+++..+.+++ .|.+.... .. .....++.+. .|..+++.+.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 60 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEW 60 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEec
Confidence 367999999999999999987 69877543 11 1234555554 5677877754
No 120
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=93.26 E-value=0.68 Score=26.26 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=33.3
Q ss_pred CceEEEEECCHHHHHHHHHH-CCCeEEecC-CCccEEEEECCCCCeEEEEee
Q 032565 87 DRHTCIAIRDVSKLKMILDK-AGISYTLSK-SGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~-~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+.|+++.|+|++++.+-+++ .|.+..... ......++..+++..+++...
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 52 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEE 52 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEec
Confidence 47999999999999998874 687765432 122334555555556676643
No 121
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=93.21 E-value=0.78 Score=29.73 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=38.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEe-CCeEEEEeecCC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPN 73 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 73 (138)
.++.|+++.|.|++++.+.+++ .|..+..... .......+|++- ++..++|++..+
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~-~~~~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKKPD-DGKMKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeCCc-cCCceeEEEEECCCCCEEEEEECCC
Confidence 3799999999999999999987 8998774322 111123344433 356788876543
No 122
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=93.20 E-value=0.66 Score=27.18 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=29.7
Q ss_pred CceEEEEECCHHHHHHHHHHCCCeEEecCCCccEEEEECCCCCeEE
Q 032565 87 DRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 132 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e 132 (138)
+.|+++.|+|+++..+-.+..|.+............+..++|..+.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~~~~~~~~~~~~~~l~ 46 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFPEEADDEPHVEAVLPGGVRLA 46 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceecCCcCCCCcEEEEeCCCEEEE
Confidence 3689999999999999988788876433221123334444444443
No 123
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.02 E-value=1.3 Score=27.38 Aligned_cols=101 Identities=12% Similarity=0.038 Sum_probs=57.9
Q ss_pred EEeCCHHHHHHHHHHhhCCeeec---cCC----C-CCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEE
Q 032565 23 ILCENLERSLEFYQNILGLEINE---ARP----H-DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 94 (138)
Q Consensus 23 l~v~d~~~a~~fy~~~lg~~~~~---~~~----~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 94 (138)
..-.+.++|.+||.++|-=..+. +.+ . .......+.+++++..+.-+...... ....... ..+.+.+
T Consensus 11 ~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~----~f~fneA-~S~~v~~ 85 (151)
T COG3865 11 WFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNT----SFKFNEA-FSFQVAC 85 (151)
T ss_pred EECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCc----CCCcCcc-EEEEEEc
Confidence 33489999999999988654332 111 1 12233455667766644433221110 1111122 3455555
Q ss_pred CC---HHHHHHHHHHCCCeEEecCCCccEEEEECCCCCeEEEE
Q 032565 95 RD---VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 95 ~d---~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e~~ 134 (138)
++ +|.+.+.|.+.|.+ ....-+++|--|.-|+|.
T Consensus 86 ~~q~E~Drlwnal~~~g~e------~~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 86 DDQEEIDRLWNALSDNGGE------AEACGWLKDKFGVSWQIV 122 (151)
T ss_pred CCHHHHHHHHHHHhccCcc------hhcceeEecccCcEEEEc
Confidence 54 67778888888862 334567889999888875
No 124
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=92.57 E-value=0.86 Score=25.49 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=35.5
Q ss_pred eEEEEECCHHHHHHHHHH-CCCeEEecCC--CccEEEEECCCCCeEEEEee
Q 032565 89 HTCIAIRDVSKLKMILDK-AGISYTLSKS--GRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 89 hi~~~v~d~~~~~~~l~~-~g~~~~~~~~--~~~~~~~~DPdG~~~e~~~~ 136 (138)
|+.+.+.|+++..+-+.+ .|.+...... .....++.++ +..+++.+.
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~ 50 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLG-GTRLELFEG 50 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecC-CceEEEecC
Confidence 788999999999999998 8988766532 3455666655 778887764
No 125
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=92.54 E-value=1.9 Score=27.94 Aligned_cols=77 Identities=19% Similarity=0.133 Sum_probs=41.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeecc-CCCCCCCeeEEE----EEeCCeEEEEeecCCCCCCCCCCCCCCCCceE
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEA-RPHDKLPYRGAW----LWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 90 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~-~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi 90 (138)
-.++||+++|++.+.|.+|-...+..-..-. ..-++......- +.+++-.+..+..+-+.. +.++ ..|+-|+
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~--K~Yp-~eGWEHI 109 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKD--KRYP-QEGWEHI 109 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---S--S--S-S-EEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCC--CCCC-CCCceEE
Confidence 4589999999999999999999887743321 111111111111 344666777777665543 2222 2567899
Q ss_pred EEEEC
Q 032565 91 CIAIR 95 (138)
Q Consensus 91 ~~~v~ 95 (138)
-|.++
T Consensus 110 E~Vip 114 (185)
T PF06185_consen 110 EFVIP 114 (185)
T ss_dssp EEE--
T ss_pred EEEec
Confidence 99987
No 126
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=92.29 E-value=1.5 Score=26.15 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=34.2
Q ss_pred CceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEECC--CCCeEEEEee
Q 032565 87 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP--DANALEFTQV 136 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~DP--dG~~~e~~~~ 136 (138)
+.|+.+.|+|+++..+.+.+ .|.+...........++..+ .+..+.+.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 54 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITG 54 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEec
Confidence 57999999999999999987 79887654332234454443 3456666543
No 127
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.24 E-value=1.4 Score=25.67 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=33.6
Q ss_pred CceEEEEECCHHHHHHHHHH-CCCeEEec----CCCccEEEEECCCCCeEEEEe
Q 032565 87 DRHTCIAIRDVSKLKMILDK-AGISYTLS----KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~-~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+.|+++.|+|+++..+-+++ .|.+.... ..+....++.-.+|..+++++
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 55 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMT 55 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEc
Confidence 57999999999999998887 58775422 222233445444667788775
No 128
>PRK10291 glyoxalase I; Provisional
Probab=91.47 E-value=1.9 Score=25.63 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=37.0
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccCC-CCCCCeeEEEEEe-CCeEEEEeecCC
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEARP-HDKLPYRGAWLWV-GAEMIHLMELPN 73 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~~~~~ 73 (138)
++.|+++.|.|++++.+-.++ .|.++..... ........+|++- ++..++|++...
T Consensus 65 ~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 65 AYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 688999999999999998887 8887764321 1111112344443 456888887653
No 129
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=91.00 E-value=2 Score=25.10 Aligned_cols=47 Identities=6% Similarity=0.063 Sum_probs=32.9
Q ss_pred CceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEECCC-CCeEEEEe
Q 032565 87 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFTQ 135 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~DPd-G~~~e~~~ 135 (138)
+.|+.+.|+|+++..+-+.+ .|.++....+ ..+++..++ +..+.+.+
T Consensus 3 i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--~~~~l~~~~~~~~l~l~~ 51 (125)
T cd07255 3 IGAVTLRVADLERSLAFYQDVLGLEVLERTD--STAVLGTGGKRPLLVLEE 51 (125)
T ss_pred EEEEEEEECCHHHHHHHHHhccCcEEEEcCC--CEEEEecCCCeEEEEEEe
Confidence 57999999999999999987 6988865522 234454443 45555544
No 130
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=90.70 E-value=1.9 Score=25.22 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=24.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeecc
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEA 46 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~ 46 (138)
.++.|+++.|.|++++.+...+ .|.++...
T Consensus 71 ~g~~~i~~~v~di~~~~~~l~~-~G~~~~~~ 100 (128)
T TIGR03081 71 GGIHHIAIEVDDIEAALETLKE-KGVRLIDE 100 (128)
T ss_pred CceEEEEEEcCCHHHHHHHHHH-CCCcccCC
Confidence 4678999999999999998876 78887653
No 131
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=90.39 E-value=2.4 Score=24.87 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=31.8
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEECCC-CCeEEEE
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFT 134 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~DPd-G~~~e~~ 134 (138)
++.|+++.|.|+++..+-+++ .|.+....... ...++..++ +..+.+.
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-~~~~~~~~~~~~~~~l~ 51 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPED-GALYLRMDDRAWRIAVH 51 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCC-CeEEEEccCCceEEEEE
Confidence 367999999999999999977 69877544222 234554443 3444443
No 132
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=89.57 E-value=2.6 Score=24.11 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=26.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEAR 47 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~ 47 (138)
.++.|+.+.|.|++++.+...+ .|..+....
T Consensus 66 ~~~~~~~~~v~di~~~~~~l~~-~g~~~~~~~ 96 (119)
T cd07263 66 GGTPGLVLATDDIDATYEELKA-RGVEFSEEP 96 (119)
T ss_pred CCceEEEEEehHHHHHHHHHHh-CCCEEeecc
Confidence 4688999999999999999987 898877644
No 133
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=89.55 E-value=1.8 Score=28.08 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=38.3
Q ss_pred CCceEEEEEC--CHHHHHHHHHH-CCCeEEec------CCCccEEEEECCCC-CeEEEEee
Q 032565 86 RDRHTCIAIR--DVSKLKMILDK-AGISYTLS------KSGRPAIFTRDPDA-NALEFTQV 136 (138)
Q Consensus 86 ~~~hi~~~v~--d~~~~~~~l~~-~g~~~~~~------~~~~~~~~~~DPdG-~~~e~~~~ 136 (138)
++.|+++.|+ |++++.+.+++ .|.+..+. ..+.++..+..|+| ..+++.++
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~ 63 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEP 63 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecC
Confidence 4689999999 99999999876 78876543 12456678888865 56788764
No 134
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=89.05 E-value=3.7 Score=25.21 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=36.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCC-CCCCCeeEEEEEe-CCeEEEEeecC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARP-HDKLPYRGAWLWV-GAEMIHLMELP 72 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~~~~ 72 (138)
.++.|+.+.|.|++++.+...+ .|.++..... .........++.- .+..++++...
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 3688999999999999999987 8887764321 1111122334333 35677777644
No 135
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=88.94 E-value=2.9 Score=24.11 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=24.2
Q ss_pred CCceEEEEECCHHHHHHHHHHCCCeEEe
Q 032565 86 RDRHTCIAIRDVSKLKMILDKAGISYTL 113 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~~g~~~~~ 113 (138)
++.|+++.|.|++++.+.+...|.+...
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 4689999999999999988888988754
No 136
>PRK11700 hypothetical protein; Provisional
Probab=88.61 E-value=4.9 Score=26.09 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=45.5
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhhCCeeecc-CCCCCCCeeEEEEE------eCCeEEEEeecCCCCCCCCCCCCCCCC
Q 032565 15 VVSVHHVGILCENLERSLEFYQNILGLEINEA-RPHDKLPYRGAWLW------VGAEMIHLMELPNPDPLSGRPEHGGRD 87 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~-~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~ 87 (138)
--..+||.++|++.+.|.+|-...+..-..-. ..-++. ..+-+. +++-.+..+..+-+.. +.++. .|+
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGR--PI~l~~L~qPl~~~~w~I~cvELP~P~~--k~Yp~-eGW 111 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGELLSENIINGR--PICLFELDQPLQVGHWSIDCVELPYPGE--KRYPH-EGW 111 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe--eEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCC-CCc
Confidence 34689999999999999999988776533221 111111 122222 2444566666554432 22332 567
Q ss_pred ceEEEEEC
Q 032565 88 RHTCIAIR 95 (138)
Q Consensus 88 ~hi~~~v~ 95 (138)
-|+-+.++
T Consensus 112 EHIElVlp 119 (187)
T PRK11700 112 EHIELVLP 119 (187)
T ss_pred eEEEEEec
Confidence 89999887
No 137
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=88.46 E-value=2.7 Score=23.79 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=26.8
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhhCCeeecc
Q 032565 14 GVVSVHHVGILCENLERSLEFYQNILGLEINEA 46 (138)
Q Consensus 14 ~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~ 46 (138)
...+..|+.+.|.|++++.+...+ +|.++...
T Consensus 53 ~~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~ 84 (108)
T PF12681_consen 53 PPGGGFHLCFEVEDVDALYERLKE-LGAEIVTE 84 (108)
T ss_dssp SSSSEEEEEEEESHHHHHHHHHHH-TTSEEEEE
T ss_pred CCCceeEEEEEEcCHHHHHHHHHH-CCCeEeeC
Confidence 345788999999999999999997 89887654
No 138
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=88.32 E-value=4.5 Score=25.25 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=44.1
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeecc-CCCCCCCeeEEEE------EeCCeEEEEeecCCCCCCCCCCCCCCCCceE
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEA-RPHDKLPYRGAWL------WVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 90 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~-~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi 90 (138)
++|+.++|++.+.|.+|-+.++.+-..-. ..-++. ...-+ .+++-.+..+..+-+.. +.++ ..|+-|+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGR--PI~l~~L~qPl~~~~~~I~cvELP~P~~--k~Yp-~eGWEHI 76 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGR--PIALIKLEKPLQFAGWSISIVELPFPKD--KKYP-QEGWEHI 76 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe--eEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCC-CCCceEE
Confidence 58999999999999999988776633221 111111 12222 23455666666654432 2222 2567899
Q ss_pred EEEEC
Q 032565 91 CIAIR 95 (138)
Q Consensus 91 ~~~v~ 95 (138)
-+.++
T Consensus 77 E~Vlp 81 (149)
T cd07268 77 EIVIP 81 (149)
T ss_pred EEEec
Confidence 99887
No 139
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=88.10 E-value=3.6 Score=23.97 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=31.1
Q ss_pred CceEEEEECCHHHHHHHHHH----CCCeEEecCCCccEEEEECC-CCCeEEEEe
Q 032565 87 DRHTCIAIRDVSKLKMILDK----AGISYTLSKSGRPAIFTRDP-DANALEFTQ 135 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~----~g~~~~~~~~~~~~~~~~DP-dG~~~e~~~ 135 (138)
+.|+.+.|.|+++..+-+++ .|.+......+ ....+..+ .+..+.+..
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 53 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGP-GAVGYGKGGGGPDFWVTK 53 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecCC-ceeEeccCCCCceEEEec
Confidence 36999999999999888877 48776543312 23444444 245555544
No 140
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=88.02 E-value=2.7 Score=24.34 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.4
Q ss_pred CceEEEEECCHHHHHHHHHH-CCCeEEec
Q 032565 87 DRHTCIAIRDVSKLKMILDK-AGISYTLS 114 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~-~g~~~~~~ 114 (138)
++|+++.|.|+++..+-+++ .|.++...
T Consensus 2 l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~ 30 (128)
T PF00903_consen 2 LDHIAIRVKDLEKAIDFYTDVLGFRLVEE 30 (128)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTSEEEEE
T ss_pred eEEEEEEcCCHHHHHHHHHHHhCCcEEee
Confidence 68999999999999999988 79887654
No 141
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=88.01 E-value=3.6 Score=23.77 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=25.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccC
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEAR 47 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~ 47 (138)
++.|+.+.|.|++++.+-..+ .|..+....
T Consensus 70 ~~~~i~~~v~did~~~~~l~~-~G~~~~~~~ 99 (121)
T cd07233 70 GFGHLAFAVDDVYAACERLEE-MGVEVTKPP 99 (121)
T ss_pred CeEEEEEEeCCHHHHHHHHHH-CCCEEeeCC
Confidence 678999999999999998886 888887643
No 142
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=87.88 E-value=3.7 Score=23.73 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=24.7
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEEec
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 114 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~ 114 (138)
++.|+.+.|+|+++..+-+++ .|.+....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~ 32 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRF 32 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecc
Confidence 468999999999999999988 79887644
No 143
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=86.66 E-value=4.4 Score=23.40 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.0
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCeeecc
Q 032565 20 HVGILCENLERSLEFYQNILGLEINEA 46 (138)
Q Consensus 20 hi~l~v~d~~~a~~fy~~~lg~~~~~~ 46 (138)
|+.+.|.|+++..+...+ .|.++...
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~~ 94 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVLP 94 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeeec
Confidence 899999999999999987 78876543
No 144
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=86.61 E-value=4.3 Score=23.25 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=29.1
Q ss_pred CceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEECC
Q 032565 87 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP 126 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~DP 126 (138)
+.|+.+.|+|+++..+-+++ .|.++....+ ...++..+
T Consensus 3 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--~~~~~~~~ 41 (117)
T cd07240 3 IAYAELEVPDLERALEFYTDVLGLTVLDRDA--GSVYLRCS 41 (117)
T ss_pred eeEEEEecCCHHHHHHHHHhccCcEEEeecC--CeEEEecC
Confidence 67999999999999999988 7988765432 24555554
No 145
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=85.91 E-value=5.6 Score=23.83 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=32.9
Q ss_pred CCCceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEECCC---CCeEEEEe
Q 032565 85 GRDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD---ANALEFTQ 135 (138)
Q Consensus 85 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~DPd---G~~~e~~~ 135 (138)
..+.|+++.|+|+++..+-+++ .|.+....... ...++..++ .+.+.+..
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-~~~~~~~~~~~~~~~i~l~~ 55 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-RGAFLRAAGGGDHHNLFLIK 55 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-cEEEEECCCCCCCcEEEEec
Confidence 3478999999999999999877 69887543222 233454432 24565543
No 146
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.94 E-value=3.3 Score=21.77 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=21.3
Q ss_pred ceEEEEEC--CHHHHHHHHHHCCCeEEec
Q 032565 88 RHTCIAIR--DVSKLKMILDKAGISYTLS 114 (138)
Q Consensus 88 ~hi~~~v~--d~~~~~~~l~~~g~~~~~~ 114 (138)
..+.|+++ +.+++.+.|+++|+++.++
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 34556654 8889999999999998875
No 147
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=83.03 E-value=7.8 Score=23.17 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=22.7
Q ss_pred CceEEEEECCHHHHHHHHHH-CCCeEEe
Q 032565 87 DRHTCIAIRDVSKLKMILDK-AGISYTL 113 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~-~g~~~~~ 113 (138)
+.|+++.|+|++++.+-+++ .|.++..
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~ 28 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLV 28 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEec
Confidence 47999999999999998887 5877653
No 148
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=82.67 E-value=7.5 Score=22.73 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=21.9
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEEe
Q 032565 88 RHTCIAIRDVSKLKMILDKAGISYTL 113 (138)
Q Consensus 88 ~hi~~~v~d~~~~~~~l~~~g~~~~~ 113 (138)
.++.+.|+|+++..+-.+..|.+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNP 27 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEcc
Confidence 46889999999999999888887653
No 149
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=82.40 E-value=9.3 Score=23.61 Aligned_cols=55 Identities=11% Similarity=-0.051 Sum_probs=31.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHHH--hhCCeeeccCCCCCCC-eeEEEEEe-CCeEEEEee
Q 032565 16 VSVHHVGILCENLERSLEFYQN--ILGLEINEARPHDKLP-YRGAWLWV-GAEMIHLME 70 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~--~lg~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~ 70 (138)
.+++|+++.|.|++++.+.+.. ..|+++.........+ ....|+.- ++..+++..
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~ 124 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYT 124 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEc
Confidence 5799999999999999744333 2677765432211111 11233333 355777764
No 150
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.13 E-value=4.4 Score=20.66 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.6
Q ss_pred CceEEEEECCHHHHHHHHHHCCCeE
Q 032565 87 DRHTCIAIRDVSKLKMILDKAGISY 111 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~~g~~~ 111 (138)
...+.+++++.+.+.+.|+++|+++
T Consensus 40 ~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 40 KALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred eEEEEEEeCCHHHHHHHHHHCCceE
Confidence 3568899999999999999999864
No 151
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=80.86 E-value=8.2 Score=22.01 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=23.5
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeecc
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEA 46 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~ 46 (138)
..|+.+.|.|++++.+-+++ .|.++...
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~ 85 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYG 85 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecC
Confidence 56899999999999998876 78887654
No 152
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=80.22 E-value=9.3 Score=22.21 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=24.8
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEEec
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 114 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~ 114 (138)
++.|+.+.|.|+++..+-+++ .|.+....
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 468999999999999999987 79887554
No 153
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=80.10 E-value=9.8 Score=22.41 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=31.4
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEE-CCCCCeEEEE
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTR-DPDANALEFT 134 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~-DPdG~~~e~~ 134 (138)
.+.|+.+.|+|+++..+.+++ .|.+...... . ..++. +.+++.+.+.
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~-~-~~~l~~~~~~~~i~l~ 54 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERTA-K-ATYFRSDARDHTLVYI 54 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCCC-C-eEEEEcCCccEEEEEE
Confidence 467999999999999999987 5988754322 2 34443 3344545443
No 154
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=80.05 E-value=2.5 Score=29.72 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCCCCceEEEEE------CCHHHHHHHHHHCCCeEE
Q 032565 83 HGGRDRHTCIAI------RDVSKLKMILDKAGISYT 112 (138)
Q Consensus 83 ~~~~~~hi~~~v------~d~~~~~~~l~~~g~~~~ 112 (138)
.+..++|+...| .||+++.+.|+++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 356789999999 999999999999999886
No 155
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=79.93 E-value=11 Score=22.76 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=22.9
Q ss_pred eeeeeEEEEeC--CHHHHHHHHHHhhCCeeec
Q 032565 16 VSVHHVGILCE--NLERSLEFYQNILGLEINE 45 (138)
Q Consensus 16 ~~l~hi~l~v~--d~~~a~~fy~~~lg~~~~~ 45 (138)
.+++|+++.+. |++++.+..++ .|.++..
T Consensus 62 ~~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~ 92 (139)
T PRK04101 62 QSYTHIAFSIEEEDFDHWYQRLKE-NDVNILP 92 (139)
T ss_pred CCeeEEEEEecHHHHHHHHHHHHH-CCceEcC
Confidence 35789999887 88888888887 7887654
No 156
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=79.21 E-value=12 Score=22.89 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.1
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEE
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYT 112 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~ 112 (138)
.+.|+.+.|+|++++.+-+++ .|.+..
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~ 31 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVS 31 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEE
Confidence 468999999999999999876 788764
No 157
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=78.95 E-value=0.78 Score=22.27 Aligned_cols=27 Identities=26% Similarity=0.591 Sum_probs=21.1
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhhC
Q 032565 14 GVVSVHHVGILCENLERSLEFYQNILG 40 (138)
Q Consensus 14 ~~~~l~hi~l~v~d~~~a~~fy~~~lg 40 (138)
.+..++-..+.+++.++.++||+..|.
T Consensus 8 gigp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 8 GIGPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CcCccccCCCccccccchhHHHHHHHH
Confidence 444566677788999999999999764
No 158
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=78.24 E-value=10 Score=21.60 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=24.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccC
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEAR 47 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~ 47 (138)
...|+.+.|+|++++.+-..+ .|.++....
T Consensus 61 ~~~~~~f~v~di~~~~~~l~~-~g~~~~~~~ 90 (114)
T cd07247 61 PGWLVYFAVDDVDAAAARVEA-AGGKVLVPP 90 (114)
T ss_pred CeEEEEEEeCCHHHHHHHHHH-CCCEEEeCC
Confidence 466899999999999998887 798877543
No 159
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=77.24 E-value=14 Score=22.77 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=24.7
Q ss_pred CCCceEEEEECCHHHHHHHHHH-CCCeEEe
Q 032565 85 GRDRHTCIAIRDVSKLKMILDK-AGISYTL 113 (138)
Q Consensus 85 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~~ 113 (138)
.++.|+++.|+|+++..+-+++ .|.++..
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~ 37 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSD 37 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEE
Confidence 5689999999999999999987 7887643
No 160
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=77.22 E-value=11 Score=21.59 Aligned_cols=29 Identities=3% Similarity=-0.055 Sum_probs=23.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeec
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINE 45 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~ 45 (138)
.++.|+++.|.|.++..+..+ .+|.....
T Consensus 56 ~~~~~~af~v~~~~~~~~~~~-~~g~~~~~ 84 (113)
T cd07267 56 ARFVGAAFEAASRADLEKAAA-LPGASVID 84 (113)
T ss_pred CcccEEEEEECCHHHHHHHHH-cCCCeeec
Confidence 468899999999998888865 47886654
No 161
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=77.12 E-value=3.9 Score=25.65 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=52.0
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeeeccCC---CCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEE---
Q 032565 21 VGILCENLERSLEFYQNILGLEINEARP---HDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI--- 94 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~~lg~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v--- 94 (138)
|...++|.+.-.+-..+.+|-....... ........+-+...+-.++++..+.+.. ...++.|+.++-
T Consensus 37 Iic~~~d~~~F~~~l~~~f~~~~~f~~~~~~i~~~~~~~~~F~~~~~~~EiF~Q~~Pv~------~QnayrHm~iE~rLL 110 (152)
T PF14091_consen 37 IICEVPDPEAFEQLLQSLFGQFEGFTIKEKTIRGEPSIVANFRYEGFPFEIFGQPIPVE------EQNAYRHMLIEHRLL 110 (152)
T ss_pred EEEEeCCHHHHHHHHHHHhccCCCceeeeceeCCceeEEEEEEECCceEEEeecCCChh------hHHHHHHHHHHHHHH
Confidence 4567889888877666655543322111 1112223344555677888886554432 124456665543
Q ss_pred ----CCHHHHHHHHHHCCCeEEec
Q 032565 95 ----RDVSKLKMILDKAGISYTLS 114 (138)
Q Consensus 95 ----~d~~~~~~~l~~~g~~~~~~ 114 (138)
+++.+-.-+||+.|++.++.
T Consensus 111 ~~~g~~~r~~Ii~LK~~GlKTEPA 134 (152)
T PF14091_consen 111 ELHGPSFREEIIELKESGLKTEPA 134 (152)
T ss_pred HhcCHHHHHHHHHHHHcCCcchHH
Confidence 36777788999999987653
No 162
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.01 E-value=7.1 Score=21.16 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=26.2
Q ss_pred HHHHHHHHHHCCCeEEec------CCCccEEEEECCCCCeE
Q 032565 97 VSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 97 ~~~~~~~l~~~g~~~~~~------~~~~~~~~~~DPdG~~~ 131 (138)
+.++...|.+.|+.+... ..-...||+.|++|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 566778888999988543 22345899999999865
No 163
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=76.31 E-value=12 Score=21.55 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=24.6
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEEec
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 114 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~ 114 (138)
++.|+.+.|+|+++..+-+.+ .|.++...
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 468999999999999999987 78887644
No 164
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=74.64 E-value=15 Score=21.50 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEECCCCCeEEEEe
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~DPdG~~~e~~~ 135 (138)
.+.|+++.|.|+++..+-.++ .|.+.....+ ...++...+|..+++.+
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPFG--PFAVVKLDNGVSLDFAQ 52 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC--CEEEEEcCCCcEEEEec
Confidence 357999999999999998876 5887655321 12333333455555443
No 165
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=73.95 E-value=14 Score=20.96 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=20.7
Q ss_pred eeeeeEEEEeC--CHHHHHHHHHHhhCCeeec
Q 032565 16 VSVHHVGILCE--NLERSLEFYQNILGLEINE 45 (138)
Q Consensus 16 ~~l~hi~l~v~--d~~~a~~fy~~~lg~~~~~ 45 (138)
.++.|+++.|. |++++.+-..+ .|.++..
T Consensus 54 ~~~~hiaf~v~~~d~~~~~~~l~~-~G~~~~~ 84 (113)
T cd08345 54 RTYTHIAFQIQSEEFDEYTERLKA-LGVEMKP 84 (113)
T ss_pred CCccEEEEEcCHHHHHHHHHHHHH-cCCccCC
Confidence 35789999984 66776777766 6777654
No 166
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.75 E-value=9.8 Score=21.06 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=22.7
Q ss_pred ceEEEEECC----HHHHHHHHHHCCCeEEec
Q 032565 88 RHTCIAIRD----VSKLKMILDKAGISYTLS 114 (138)
Q Consensus 88 ~hi~~~v~d----~~~~~~~l~~~g~~~~~~ 114 (138)
..+.+++++ ++++.+.|++.|+++...
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 567889888 889999999999988653
No 167
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=73.43 E-value=18 Score=22.04 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=31.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHh--hCCeeeccCCCCC-CCeeEEEEEe-CCeEEEEee
Q 032565 16 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDK-LPYRGAWLWV-GAEMIHLME 70 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~--lg~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~ 70 (138)
.+++|+++.|.|+++..+.+..+ .|.++........ ......++.- ++..++++.
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 46889999999998865444332 6776653221111 1112334433 456888865
No 168
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=72.28 E-value=16 Score=20.96 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=23.7
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEEe
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYTL 113 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~ 113 (138)
++.|+.|.|.|+++..+-+++ .|.+...
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~ 31 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVA 31 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEE
Confidence 578999999999999998887 6877654
No 169
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=72.08 E-value=17 Score=21.04 Aligned_cols=27 Identities=4% Similarity=0.156 Sum_probs=22.0
Q ss_pred eeEEEEeCCHHHHHHHHHHhhCCeeecc
Q 032565 19 HHVGILCENLERSLEFYQNILGLEINEA 46 (138)
Q Consensus 19 ~hi~l~v~d~~~a~~fy~~~lg~~~~~~ 46 (138)
.++.+.|+|++++.+...+ .|.+....
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~~ 99 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVSE 99 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEeccC
Confidence 4788999999999888876 78877654
No 170
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=71.43 E-value=18 Score=21.06 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=23.6
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEEe
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYTL 113 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~ 113 (138)
++.|+.+.|+|++++.+-+++ .|.+...
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~ 29 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHV 29 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEE
Confidence 368999999999999998886 7887654
No 171
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=71.29 E-value=19 Score=21.32 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=22.2
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEe
Q 032565 88 RHTCIAIRDVSKLKMILDK-AGISYTL 113 (138)
Q Consensus 88 ~hi~~~v~d~~~~~~~l~~-~g~~~~~ 113 (138)
.|+++.|.|++++.+-+++ .|.+...
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~ 27 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSD 27 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEE
Confidence 4899999999999998876 7988753
No 172
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=69.89 E-value=17 Score=20.38 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=21.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCe
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLE 42 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~ 42 (138)
.+-.|+.+.+.|++++.+-..+ .|..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 57 GRGGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred CCcEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 3455788999999999999887 7887
No 173
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=69.40 E-value=28 Score=22.56 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=49.7
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECCH
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 97 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~ 97 (138)
..-+.+.++|++++.+-+.. |||.......- .+.. ...++..+++-.+.+-+ ...-|...++|-
T Consensus 78 r~E~E~~v~D~~~~~~il~~-LGF~~~~~VkK----~R~i-Y~~~~~~i~lD~VegLG----------~F~EIE~~~~d~ 141 (178)
T COG1437 78 REEIEIEVSDVEKALEILKR-LGFKEVAVVKK----TREI-YKVGNVTIELDAVEGLG----------DFLEIEVMVDDE 141 (178)
T ss_pred eeeEEEEeCCHHHHHHHHHH-cCCceeeEEEE----EEEE-EeeCCEEEEEecccCCc----------ccEEEEEecCCc
Confidence 45567889999999999987 99987765330 1222 33466666666555432 233455555543
Q ss_pred HH-------HHHHHHHCCCeE
Q 032565 98 SK-------LKMILDKAGISY 111 (138)
Q Consensus 98 ~~-------~~~~l~~~g~~~ 111 (138)
++ +.+-+++.|++.
T Consensus 142 ~e~~~~~~~~~~i~~~lGl~~ 162 (178)
T COG1437 142 NEIDGAKEEIEEIARQLGLKE 162 (178)
T ss_pred hhhHHHHHHHHHHHHHhCCCh
Confidence 33 677788888864
No 174
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=69.12 E-value=6.5 Score=23.63 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=49.7
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeeeccC------CCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEE
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEINEAR------PHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 91 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 91 (138)
++-+.+.|++.+.|.+-..+ -||.+.... ++...+...+.--+++..+.+-..... .....-.-+.
T Consensus 42 FGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAF-------v~ek~KAlli 113 (142)
T COG4747 42 FGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAF-------VTEKQKALLI 113 (142)
T ss_pred cceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeee-------eecCceEEEE
Confidence 56677889999999999988 788876431 111100000000001111111000000 0001123478
Q ss_pred EEECCHHHHHHHHHHCCCeEEec
Q 032565 92 IAIRDVSKLKMILDKAGISYTLS 114 (138)
Q Consensus 92 ~~v~d~~~~~~~l~~~g~~~~~~ 114 (138)
++|+|+|+....|++.|+++..+
T Consensus 114 ~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 114 VRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEhhHHHHHHHHHHHcCCeecCh
Confidence 89999999999999999987643
No 175
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=67.71 E-value=23 Score=21.02 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=19.9
Q ss_pred eeeeEEEEeC--CHHHHHHHHHHhhCCeeec
Q 032565 17 SVHHVGILCE--NLERSLEFYQNILGLEINE 45 (138)
Q Consensus 17 ~l~hi~l~v~--d~~~a~~fy~~~lg~~~~~ 45 (138)
+++|+++.|+ |+++..+-.++ .|..+..
T Consensus 66 ~~~Hiaf~v~~~~ld~~~~~l~~-~gv~~~~ 95 (131)
T cd08364 66 TYNHIAFKISDSDVDEYTERIKA-LGVEMKP 95 (131)
T ss_pred CceEEEEEcCHHHHHHHHHHHHH-CCCEEec
Confidence 5899999998 56666666655 6776543
No 176
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.56 E-value=5.2 Score=26.77 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHhhCCeeeccCC
Q 032565 26 ENLERSLEFYQNILGLEINEARP 48 (138)
Q Consensus 26 ~d~~~a~~fy~~~lg~~~~~~~~ 48 (138)
-|+.+++.||++.||+++....+
T Consensus 145 a~~~e~a~wy~dyLGleie~~hg 167 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGHG 167 (246)
T ss_pred hccHHHHHHHHHhcCceeeeccC
Confidence 46788899999999999876533
No 177
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=67.09 E-value=22 Score=20.55 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=17.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHh--hCCee
Q 032565 16 VSVHHVGILCENLERSLEFYQNI--LGLEI 43 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~--lg~~~ 43 (138)
.+++|+++.+.+.+.-.++++.+ .|.++
T Consensus 61 ~~~~h~af~v~~~~~v~~~~~~l~~~G~~~ 90 (121)
T cd09013 61 AGLGHIAWRASSPEALERRVAALEASGLGI 90 (121)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHcCCcc
Confidence 36889999998655444444432 56654
No 178
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=66.91 E-value=22 Score=20.35 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=22.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeeccC
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEAR 47 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~ 47 (138)
+..|+.+.|.|++++.+-..+ .|.++....
T Consensus 68 ~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~~ 97 (122)
T cd07246 68 TPVSLHLYVEDVDATFARAVA-AGATSVMPP 97 (122)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-CCCeEecCc
Confidence 466899999999988776665 688776543
No 179
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=66.75 E-value=26 Score=21.19 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.3
Q ss_pred CceEEEEECCHHHHHHHHHH-CCCeEEe
Q 032565 87 DRHTCIAIRDVSKLKMILDK-AGISYTL 113 (138)
Q Consensus 87 ~~hi~~~v~d~~~~~~~l~~-~g~~~~~ 113 (138)
+.|+++.|.|+++..+-.++ .|.+...
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEe
Confidence 57999999999999999965 7998744
No 180
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=64.51 E-value=30 Score=21.10 Aligned_cols=56 Identities=7% Similarity=-0.003 Sum_probs=30.6
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHh--hCCeeeccCCC-CCCCeeEEEEEe-CCeEEEEee
Q 032565 15 VVSVHHVGILCENLERSLEFYQNI--LGLEINEARPH-DKLPYRGAWLWV-GAEMIHLME 70 (138)
Q Consensus 15 ~~~l~hi~l~v~d~~~a~~fy~~~--lg~~~~~~~~~-~~~~~~~~~~~~-~~~~~~l~~ 70 (138)
..+++|+++.|.|.+...+++..+ .|.++...... ........|++- ++..+++..
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEe
Confidence 357999999999877555555543 56665432211 111112234443 345677754
No 181
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=64.06 E-value=15 Score=22.83 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.5
Q ss_pred CCceEEEEECCHHHHHHHHHH-CCCeEE
Q 032565 86 RDRHTCIAIRDVSKLKMILDK-AGISYT 112 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~ 112 (138)
++.|+++.|.|+++..+-+++ .|.+..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~ 30 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVS 30 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEE
Confidence 468999999999999999987 798765
No 182
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=62.35 E-value=11 Score=15.38 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=8.5
Q ss_pred EEEEECCCCCeE
Q 032565 120 AIFTRDPDANAL 131 (138)
Q Consensus 120 ~~~~~DPdG~~~ 131 (138)
...++|++|++|
T Consensus 8 ~~i~~D~~G~lW 19 (24)
T PF07494_consen 8 YSIYEDSDGNLW 19 (24)
T ss_dssp EEEEE-TTSCEE
T ss_pred EEEEEcCCcCEE
Confidence 456789999887
No 183
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.30 E-value=16 Score=19.08 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=20.4
Q ss_pred CceEEEEEC---CHHHHHHHHHHCCCeEE
Q 032565 87 DRHTCIAIR---DVSKLKMILDKAGISYT 112 (138)
Q Consensus 87 ~~hi~~~v~---d~~~~~~~l~~~g~~~~ 112 (138)
..++.+++. +++++.+.|++.|+.+.
T Consensus 39 ~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 39 RVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 456788886 57888999999998753
No 184
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=59.93 E-value=20 Score=27.08 Aligned_cols=33 Identities=33% Similarity=0.380 Sum_probs=26.5
Q ss_pred HHHHHHCCCeEEe----cCCCccEEEEECCCCCeEEE
Q 032565 101 KMILDKAGISYTL----SKSGRPAIFTRDPDANALEF 133 (138)
Q Consensus 101 ~~~l~~~g~~~~~----~~~~~~~~~~~DPdG~~~e~ 133 (138)
...|.++|+.++- +.-|++....+|+||+..|-
T Consensus 16 a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~ 52 (485)
T COG3349 16 AYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEH 52 (485)
T ss_pred HHHHHhCCCceEEEeccCccCceeeeeecCCCCeeee
Confidence 4577889988753 25699999999999998874
No 185
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=59.61 E-value=31 Score=19.59 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=19.4
Q ss_pred eeeeeEEEEeCCH---HHHHHHHHHhhCCeeecc
Q 032565 16 VSVHHVGILCENL---ERSLEFYQNILGLEINEA 46 (138)
Q Consensus 16 ~~l~hi~l~v~d~---~~a~~fy~~~lg~~~~~~ 46 (138)
.+..|+.+.+.|. +++.+...+ .|.++...
T Consensus 58 ~~~~~~~~~v~~~~~~~~~~~~~~~-~g~~v~~~ 90 (114)
T cd07261 58 GGGSELAFMVDDGAAVDALYAEWQA-KGVKIIQE 90 (114)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHH-CCCeEecC
Confidence 3578999999874 444444444 66666553
No 186
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=58.99 E-value=23 Score=18.04 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHCCCeEEecCCCccEEEEECCCCCeEEEEeec
Q 032565 96 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 96 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
++++-.++-...|-.+..... ....-..+|||..+-|.+..
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~~-~g~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAGP-PGPVAAFAPDGRLVALLEER 45 (56)
T ss_dssp E--HHHHHHHHTT---B------S-EEEE-TTS-EEEEEEEE
T ss_pred ECCHHHHHHHhCCCccCCCCC-CceEEEECCCCcEEEEEEcc
Confidence 344555555677766655422 22466889999999998753
No 187
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=58.64 E-value=33 Score=19.61 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=30.8
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEECCCCCeEEEEe
Q 032565 88 RHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 88 ~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~DPdG~~~e~~~ 135 (138)
.++.+.|.|+++..+..++ .|.+...... ....++.-.++..+.+.+
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~~~~~l~~~~~~~~~l~~ 49 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKED-RRLAFFWVGGRGMLLLFD 49 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCC-CceEEEEcCCCcEEEEEe
Confidence 4789999999999999975 6988765322 223444444444444443
No 188
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=58.55 E-value=23 Score=22.57 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=23.8
Q ss_pred EEEECCHHHHHHHHHHCCCeEEecCCCccEEEEECCC
Q 032565 91 CIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPD 127 (138)
Q Consensus 91 ~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPd 127 (138)
=+.+.|++.+.++|++.|..... ..-+.-.||..|+
T Consensus 7 K~~v~d~~~~~~~L~~~g~~~~~-~~~q~D~Yfd~p~ 42 (174)
T TIGR00318 7 KAKIPDKEKVVEKLKNKGFKFIK-KEFQHDIYFSNPC 42 (174)
T ss_pred EEEcCCHHHHHHHHHhcCccccc-ccceEEEeecCCC
Confidence 35567999999999999865433 2234445555554
No 189
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=58.10 E-value=33 Score=22.68 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=31.3
Q ss_pred CCCCceEEEEECCHHHHHHHHHHCCCeEEec-----CCCccEEEEECCC
Q 032565 84 GGRDRHTCIAIRDVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPD 127 (138)
Q Consensus 84 ~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~-----~~~~~~~~~~DPd 127 (138)
+.++.+|.+.-.|+.++...++..|+.+... .++.+.++|.-.|
T Consensus 31 g~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 31 GKGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred CCCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 3456677777779999999999999988643 2345566766544
No 190
>PRK06724 hypothetical protein; Provisional
Probab=58.02 E-value=38 Score=20.24 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=19.6
Q ss_pred eeeeeEEEEe---CCHHHHHHHHHHhhCCeeec
Q 032565 16 VSVHHVGILC---ENLERSLEFYQNILGLEINE 45 (138)
Q Consensus 16 ~~l~hi~l~v---~d~~~a~~fy~~~lg~~~~~ 45 (138)
.++.|+++.| .|+++..+...+ .|.++..
T Consensus 62 ~g~~h~af~v~~~~dvd~~~~~l~~-~G~~~~~ 93 (128)
T PRK06724 62 LGPRHICYQAINRKVVDEVAEFLSS-TKIKIIR 93 (128)
T ss_pred CCceeEEEecCChHHHHHHHHHHHH-CCCEEec
Confidence 3688999998 455555555554 7877654
No 191
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=57.67 E-value=12 Score=16.82 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=14.5
Q ss_pred EEeCCHHHHHHHHHHhhCC
Q 032565 23 ILCENLERSLEFYQNILGL 41 (138)
Q Consensus 23 l~v~d~~~a~~fy~~~lg~ 41 (138)
....|.++|+++|++.|.+
T Consensus 10 ~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 10 RQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHCT-HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 3467999999999997754
No 192
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=57.09 E-value=29 Score=20.52 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeE
Q 032565 95 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~ 131 (138)
.+++.+.+.|++.|+++... ...+|.++|.--+|..+
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEEE
Confidence 48999999999999999754 44567777776677654
No 193
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=56.44 E-value=27 Score=18.00 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=19.5
Q ss_pred eEEEEECCHHHHHHHHHHCCCeEE
Q 032565 89 HTCIAIRDVSKLKMILDKAGISYT 112 (138)
Q Consensus 89 hi~~~v~d~~~~~~~l~~~g~~~~ 112 (138)
.+-+.++|.+.+.+.|+++|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 466677888899999999998763
No 194
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=56.31 E-value=35 Score=21.87 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=28.5
Q ss_pred ECCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeE
Q 032565 94 IRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~ 131 (138)
-.+++.+.+.|++.|+++... ...+|.++|.--+|..+
T Consensus 114 ~rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~v~ 154 (167)
T PRK13498 114 DKNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGNVW 154 (167)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 358999999999999999765 33457777766666543
No 195
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=56.24 E-value=35 Score=21.74 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeE
Q 032565 95 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~ 131 (138)
.|++.+.+.|++.|+++... ...+|.++|.--+|..+
T Consensus 112 rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v~ 151 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAEDIGGNKGRTMIFDTSDGKVY 151 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEEE
Confidence 48999999999999999755 34567777766666543
No 196
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=56.06 E-value=35 Score=21.64 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeE
Q 032565 95 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~ 131 (138)
.|++.+.+.|++.|+++... ...+|.++|.--+|..+
T Consensus 105 rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 48999999999999999755 34567777766666543
No 197
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=54.48 E-value=9.5 Score=25.63 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=26.7
Q ss_pred EEEECCHHHHHHHHHHCCCeEEec--CCCccEEEEECCCCCeEEEE
Q 032565 91 CIAIRDVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 91 ~~~v~d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPdG~~~e~~ 134 (138)
+|...|-+.+.+.| .|+.++.. .++...|+.+||||+-..++
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSKQPVLLFNVKQPSSYSCMLC 226 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccccceEEEEeeCCCccchhhc
Confidence 34444555555644 56666653 44556789999999976554
No 198
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=53.90 E-value=48 Score=21.32 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=25.7
Q ss_pred EEEEECCHHHHHHHHHHCCCeEEecCCCccEEEEECCCCCeEE
Q 032565 90 TCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 132 (138)
Q Consensus 90 i~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e 132 (138)
+.+..++.+++.+.|++.|..++...+ .-++.+++|..+.
T Consensus 47 i~~~~~~~~~l~~~L~~~G~~ite~~~---~~~l~~~~g~llD 86 (174)
T PF10706_consen 47 IFVPREDQAELRALLKELGYRITETTD---YGFLADDDGRLLD 86 (174)
T ss_dssp EEEEGGGHHHHHHHHHHTT-EEEEEET---EEEEEETTTEEEE
T ss_pred EEEEcchhHHHHHHHHHCCCEEEEecc---ccEEEcCCCCEEE
Confidence 555556899999999999998765421 2335555554443
No 199
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=53.76 E-value=41 Score=21.49 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeE
Q 032565 95 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~ 131 (138)
.+++.+.+.|++.|+++... ...+|.++|..-+|..+
T Consensus 114 rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~v~ 153 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFKVI 153 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 48999999999999999755 44567777766666543
No 200
>PTZ00330 acetyltransferase; Provisional
Probab=52.19 E-value=23 Score=21.18 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=18.7
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeec
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINE 45 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~ 45 (138)
++..+.+.++ ..+.+||++ +||+...
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~ 140 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACE 140 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEec
Confidence 3445556654 579999987 9998765
No 201
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=51.86 E-value=45 Score=19.18 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=21.8
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCC-eeec
Q 032565 17 SVHHVGILCENLERSLEFYQNILGL-EINE 45 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~-~~~~ 45 (138)
+..|+.+.|.|+++..+-.++ .|. ++..
T Consensus 64 ~~~~l~~~v~dvd~~~~~l~~-~g~~~~~~ 92 (120)
T cd09011 64 NNFELYFEEEDFDAFLDKLKR-YDNIEYVH 92 (120)
T ss_pred CceEEEEEehhhHHHHHHHHh-cCCcEEec
Confidence 456899999999999999987 553 4544
No 202
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=50.63 E-value=34 Score=18.92 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=15.8
Q ss_pred EEeCCHHHHHHHHHHhhCCeeec
Q 032565 23 ILCENLERSLEFYQNILGLEINE 45 (138)
Q Consensus 23 l~v~d~~~a~~fy~~~lg~~~~~ 45 (138)
....+-..|.++|++ |||+...
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~ 81 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIE 81 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEE
Confidence 344666899999998 9998775
No 203
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=50.49 E-value=49 Score=20.93 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=27.7
Q ss_pred ECCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCe
Q 032565 94 IRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANA 130 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~ 130 (138)
-.|++.+.+.|++.|+++... ...+|.++|.--+|..
T Consensus 106 ~rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f~~~tG~v 145 (157)
T PRK13488 106 ERNIESAKETLKKLGIRIVAEDVGGDYGRTVKFDLKTGKV 145 (157)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEEECCCCEE
Confidence 358999999999999999765 3345677776666654
No 204
>PRK03094 hypothetical protein; Provisional
Probab=50.25 E-value=33 Score=19.10 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=24.9
Q ss_pred EEC-CHHHHHHHHHHCCCeEEecC-----CCccEEEEECCCCCe
Q 032565 93 AIR-DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANA 130 (138)
Q Consensus 93 ~v~-d~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~DPdG~~ 130 (138)
.|+ ++..+.+.|+++|+++..-. .+...+.+..-|.|.
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~ 48 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNV 48 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcce
Confidence 354 78899999999999997542 223345555544443
No 205
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=50.07 E-value=23 Score=20.05 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=21.6
Q ss_pred CCCceEEEEEC---CHHHHHHHHHHCCCeEEec
Q 032565 85 GRDRHTCIAIR---DVSKLKMILDKAGISYTLS 114 (138)
Q Consensus 85 ~~~~hi~~~v~---d~~~~~~~l~~~g~~~~~~ 114 (138)
.+...+++.++ +++++.++|++.|+++...
T Consensus 49 ~a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dl 81 (91)
T PF00585_consen 49 FARVLVGIEVPDAEDLEELIERLKALGYPYEDL 81 (91)
T ss_dssp CSEEEEEEE-SSTHHHHHHHHHHTSSS-EEECT
T ss_pred eeeEEEEEEeCCHHHHHHHHHHHHHcCCCeEEC
Confidence 34567889887 4677999999999988654
No 206
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=49.27 E-value=52 Score=21.78 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeE
Q 032565 95 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~ 131 (138)
.|++.+.+.|++.|+++... ...+|.++|.--+|..+
T Consensus 115 rNie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v~ 154 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRVQ 154 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 48999999999999999754 34567777776667654
No 207
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=48.20 E-value=31 Score=17.07 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=11.8
Q ss_pred EEEEECCCCCeEEEE
Q 032565 120 AIFTRDPDANALEFT 134 (138)
Q Consensus 120 ~~~~~DPdG~~~e~~ 134 (138)
+..+.||||....+.
T Consensus 30 sY~y~~pdG~~~~V~ 44 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVT 44 (52)
T ss_pred EEEEECCCCCEEEEE
Confidence 577899999977664
No 208
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=47.70 E-value=59 Score=21.23 Aligned_cols=38 Identities=13% Similarity=-0.015 Sum_probs=28.8
Q ss_pred ECCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeE
Q 032565 94 IRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~ 131 (138)
-.|++.+.+.|++.|+++... ...+|.++|..-+|..+
T Consensus 111 ~rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 111 EQNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeEE
Confidence 348999999999999999754 34567777776667654
No 209
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=46.80 E-value=56 Score=21.87 Aligned_cols=37 Identities=5% Similarity=0.055 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeE
Q 032565 95 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~ 131 (138)
.|++.+.+.|++.|+++... ...+|.++|..-+|..+
T Consensus 139 rNi~~a~~~L~~~gI~Iva~DvGG~~gRki~f~~~tG~v~ 178 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQAW 178 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 48999999999999999754 33556777766666543
No 210
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=46.70 E-value=42 Score=23.52 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=34.8
Q ss_pred eEEEEEC-CHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEee
Q 032565 89 HTCIAIR-DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 89 hi~~~v~-d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
-|+.+|+ ++..+.+-|++..-.+... .+.+++..|+.++|+.+||.+.
T Consensus 160 aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d~ak~~~fqn~~~y~VefLTt 211 (349)
T COG5397 160 AISREVDDSLPPILDLLRSVDPSFRPVPHRSDPAKSSAFQNRDGYRVEFLTT 211 (349)
T ss_pred hhhHHhcccccHHHHHHhccCcccccCCccCCCccceeeecCCCeEEEEecc
Confidence 3555565 5777888888777666543 3456677779999999999874
No 211
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=45.65 E-value=62 Score=21.45 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=28.4
Q ss_pred ECCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeE
Q 032565 94 IRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~ 131 (138)
-.|++.+.+.|++.|+++... ...+|.++|..-+|..+
T Consensus 126 ~rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f~~~tG~v~ 166 (201)
T PRK13487 126 ERNAEFVRDYLQTERIPIVAEDLLDIYPRKVYFFPTTGKVL 166 (201)
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEEE
Confidence 358999999999999999755 34556777766666543
No 212
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=45.61 E-value=62 Score=19.00 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCCeEEecCCCccEEEEECCCCCeEEEEeec
Q 032565 98 SKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 98 ~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
.++.+.|++.|+ ..+++|+..|.+.+|...|..
T Consensus 27 PE~~a~lk~agi-------~nYSIfLde~~n~lFgy~E~~ 59 (105)
T COG3254 27 PELLALLKEAGI-------RNYSIFLDEEENLLFGYWEYE 59 (105)
T ss_pred HHHHHHHHHcCC-------ceeEEEecCCcccEEEEEEEc
Confidence 345566666665 356889999999988887753
No 213
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=44.77 E-value=25 Score=18.55 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=17.7
Q ss_pred eeeeeEEEEe-CCHHHHHHHHHHhhCCe
Q 032565 16 VSVHHVGILC-ENLERSLEFYQNILGLE 42 (138)
Q Consensus 16 ~~l~hi~l~v-~d~~~a~~fy~~~lg~~ 42 (138)
.++..+.+.+ .+-..+.+||++ +||+
T Consensus 57 ~g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 57 RGIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TTESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred cCccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 3466666665 444568899997 8874
No 214
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.05 E-value=87 Score=20.23 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=44.2
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhhCCeeec-cCCCCCCCeeEEEEEe------CCeEEEEeecCCCCCCCCCCCCCC
Q 032565 13 YGVVSVHHVGILCENLERSLEFYQNILGLEINE-ARPHDKLPYRGAWLWV------GAEMIHLMELPNPDPLSGRPEHGG 85 (138)
Q Consensus 13 ~~~~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~-~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~ 85 (138)
.+-.-++|++|+|.+.+-|+.|-...+.+-..- ..-.++. ....+++ ..-.+..+..+-+.. +.++. .
T Consensus 35 lt~~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n~iNGR--pI~li~l~~Pl~v~~w~id~iELP~P~~--K~YP~-e 109 (185)
T COG3102 35 LTQYTADHIALRVHQEQTAKRWRRGLLQCGELLSENLINGR--PICLIKLHQPLQVAHWQIDIIELPYPKN--KRYPH-E 109 (185)
T ss_pred ccccccceeEEEeCcHHHHHHHHHHHHHHHHHhhhhhcCCc--eEEEEEcCCcceecceEEEEEEccCCcC--CCCCC-c
Confidence 344568999999999888888766555442211 1111111 1222333 233455555443322 22222 5
Q ss_pred CCceEEEEEC-CHHHH
Q 032565 86 RDRHTCIAIR-DVSKL 100 (138)
Q Consensus 86 ~~~hi~~~v~-d~~~~ 100 (138)
+.-|+-+..+ +-+++
T Consensus 110 gWEHIEiVlP~~peel 125 (185)
T COG3102 110 GWEHIEIVLPGDPEEL 125 (185)
T ss_pred CceeEEEEcCCChHHH
Confidence 5789999887 44444
No 215
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=43.77 E-value=1.1e+02 Score=21.44 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=33.0
Q ss_pred CceEEEEECC----HHHHHHHHHHCCCeEEec------CCCccEEEEECCCCCeEE
Q 032565 87 DRHTCIAIRD----VSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANALE 132 (138)
Q Consensus 87 ~~hi~~~v~d----~~~~~~~l~~~g~~~~~~------~~~~~~~~~~DPdG~~~e 132 (138)
-..+.|.++| +-++..-+..+|+.++.- ..-+.++|+.|-+|+.-+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc
Confidence 4568888874 667778888999987542 335667888888887543
No 216
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=43.33 E-value=16 Score=18.22 Aligned_cols=15 Identities=20% Similarity=0.645 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHhhC
Q 032565 26 ENLERSLEFYQNILG 40 (138)
Q Consensus 26 ~d~~~a~~fy~~~lg 40 (138)
+++++.++||+..|.
T Consensus 23 s~v~~~~dWYk~Mfk 37 (50)
T smart00459 23 SSVERPKDWYRTMFK 37 (50)
T ss_pred cCcccHHHHHHHHHH
Confidence 377899999999764
No 217
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=42.99 E-value=65 Score=18.48 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=21.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeeecc
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEINEA 46 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~ 46 (138)
+-.++.+.|.|++++.+-..+ .|.++...
T Consensus 68 ~~~~~~~~v~d~d~~~~~l~~-~G~~v~~~ 96 (122)
T cd08355 68 GTQGVYVVVDDVDAHYERARA-AGAEILRE 96 (122)
T ss_pred ceEEEEEEECCHHHHHHHHHH-CCCEEeeC
Confidence 345789999999888776665 57777654
No 218
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.10 E-value=31 Score=17.75 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=15.9
Q ss_pred EEEEE---CCHHHHHHHHHHCCCe
Q 032565 90 TCIAI---RDVSKLKMILDKAGIS 110 (138)
Q Consensus 90 i~~~v---~d~~~~~~~l~~~g~~ 110 (138)
+.+.+ ++.+.+.+.|+++|++
T Consensus 45 ~~i~v~~~~~~~~~~~~L~~~G~~ 68 (69)
T cd04909 45 LRISFKTQEDRERAKEILKEAGYE 68 (69)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCc
Confidence 34545 3678999999999975
No 219
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=41.86 E-value=49 Score=20.18 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=20.6
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCeee
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEIN 44 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~~ 44 (138)
-+|+.+...|..+..+-..+.||+++.
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 689999999999999988899999876
No 220
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=41.47 E-value=38 Score=20.97 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=22.4
Q ss_pred eeEEEEeC-CHHHHHHHHHHhhCCeeeccCC
Q 032565 19 HHVGILCE-NLERSLEFYQNILGLEINEARP 48 (138)
Q Consensus 19 ~hi~l~v~-d~~~a~~fy~~~lg~~~~~~~~ 48 (138)
..+.|.|+ +=..|..||++ +||+......
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~~ 156 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIRK 156 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeeeh
Confidence 56677764 55699999998 9999877654
No 221
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=41.46 E-value=86 Score=19.43 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=32.0
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEE-eCCeEEEEeecC
Q 032565 16 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLW-VGAEMIHLMELP 72 (138)
Q Consensus 16 ~~l~hi~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 72 (138)
.+++-+.|.|+|.+++.+-=.+ +|-+....... .......-++ .|++.+.|+...
T Consensus 72 ~sv~aiafrV~Da~~A~~rA~~-~GA~~~~~~~~-~~e~~~paI~g~G~sl~yfVdr~ 127 (139)
T PF14696_consen 72 PSVCAIAFRVDDAAAAYERAVA-LGAEPVQEPTG-PGELNIPAIRGIGGSLHYFVDRY 127 (139)
T ss_dssp SEEEEEEEEES-HHHHHHHHHH-TT--EEEEEEE-TT-BEEEEEE-CCC-EEEEEE--
T ss_pred CEEEEEEEEeCCHHHHHHHHHH-cCCcCcccCCC-CCcEeeeeEEccCCCEEEEEecC
Confidence 4799999999999999888776 78877664321 1122322233 367777777654
No 222
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=41.19 E-value=88 Score=20.25 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHCCCeEEec----CCCccEEEEECCCCCeEEEEeec
Q 032565 96 DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 137 (138)
Q Consensus 96 d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~DPdG~~~e~~~~~ 137 (138)
.++++.+...+.-...... -.|.-.|.+.++||..+.+.+..
T Consensus 79 k~del~akF~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~ 124 (181)
T COG1791 79 KLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEK 124 (181)
T ss_pred cHHHHHHHHHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEcc
Confidence 4666655554433222111 23556799999999998887643
No 223
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=41.12 E-value=33 Score=20.43 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=19.9
Q ss_pred eeeeeEEEEeC-CHHHHHHHHHHhhCCeeec
Q 032565 16 VSVHHVGILCE-NLERSLEFYQNILGLEINE 45 (138)
Q Consensus 16 ~~l~hi~l~v~-d~~~a~~fy~~~lg~~~~~ 45 (138)
.+...+.+.+. +-..|.+||++ +||....
T Consensus 108 ~~~~~i~l~~~~~n~~a~~fY~~-~Gf~~~~ 137 (144)
T PRK10146 108 AGAEMTELSTNVKRHDAHRFYLR-EGYEQSH 137 (144)
T ss_pred cCCcEEEEecCCCchHHHHHHHH-cCCchhh
Confidence 35556666653 34589999998 9997553
No 224
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.53 E-value=13 Score=26.72 Aligned_cols=25 Identities=4% Similarity=0.214 Sum_probs=19.9
Q ss_pred EEEEECCHHHHHHHHHHCCCeEEec
Q 032565 90 TCIAIRDVSKLKMILDKAGISYTLS 114 (138)
Q Consensus 90 i~~~v~d~~~~~~~l~~~g~~~~~~ 114 (138)
+|..+++.+++++..+++|+.+..+
T Consensus 105 la~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 105 LAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred ccCCHHHHHHHHHHHHHcCcEEEee
Confidence 4666778999999999999877543
No 225
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=40.53 E-value=82 Score=21.46 Aligned_cols=37 Identities=14% Similarity=0.007 Sum_probs=27.7
Q ss_pred ECCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCe
Q 032565 94 IRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANA 130 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~ 130 (138)
-.|++.+.+.|++.|+++... ...++.++|.--+|..
T Consensus 124 ~RNieaa~~~L~~~gI~IvaeDvGG~~gRkV~f~~~TG~v 163 (233)
T PRK13489 124 DRNADFVRRYLALERIRITAEDLQGVHPRKVAFMPRTGRA 163 (233)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 348999999999999999754 3455677776666654
No 226
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=40.17 E-value=1.1e+02 Score=21.15 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=26.0
Q ss_pred HHHHHHHHHHCCCeEEecCCCccEEEEECCCCCeEEE
Q 032565 97 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 133 (138)
Q Consensus 97 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e~ 133 (138)
.+.+.+..+++|+++.......-++++.|||++.+=+
T Consensus 150 ~~~i~k~wk~rgi~F~~~k~slISV~~h~~d~~~lFv 186 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNNDKASLISVFLHDPDDNSLFV 186 (250)
T ss_pred HHHHHHHHHHcCceeCCCceEEEEEEEEcCCCCeEEe
Confidence 4556788899999993334445578888888876543
No 227
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=39.82 E-value=51 Score=19.97 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=22.2
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhhCCeeeccCC
Q 032565 17 SVHHVGILC-ENLERSLEFYQNILGLEINEARP 48 (138)
Q Consensus 17 ~l~hi~l~v-~d~~~a~~fy~~~lg~~~~~~~~ 48 (138)
++..+.+.| .+=.+|.+||++ +||.......
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~~~ 143 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGTGK 143 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEeecc
Confidence 456676666 445678999986 9999876543
No 228
>KOG2267 consensus Eukaryotic-type DNA primase, large subunit [Replication, recombination and repair]
Probab=39.64 E-value=28 Score=25.63 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=18.6
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeE
Q 032565 88 RHTCIAIRDVSKLKMILDKAGISY 111 (138)
Q Consensus 88 ~hi~~~v~d~~~~~~~l~~~g~~~ 111 (138)
+-+-|+..|.+.+.++|++.|+..
T Consensus 384 hgCPFr~~~~e~L~qkL~s~~i~~ 407 (475)
T KOG2267|consen 384 HGCPFRHSDPEHLKQKLKSMGIDI 407 (475)
T ss_pred CCCCCCCCCHHHHHHHHHhcccCH
Confidence 335576778999999999998864
No 229
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=39.59 E-value=25 Score=18.65 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=14.3
Q ss_pred EEEEeCCHHHHHHHHHHhhCCee
Q 032565 21 VGILCENLERSLEFYQNILGLEI 43 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~~lg~~~ 43 (138)
+.+.+ -..+..||++ +||++
T Consensus 60 i~l~~--~~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 60 IFLFT--NPAAIKFYEK-LGFEE 79 (79)
T ss_dssp EEEEE--EHHHHHHHHH-TTEEE
T ss_pred EEEEE--cHHHHHHHHH-CcCCC
Confidence 44444 2689999998 89864
No 230
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=39.38 E-value=55 Score=20.60 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=19.2
Q ss_pred EEEECCHHHHHHHHHHCCCeEEecCCCccEEEEECC
Q 032565 91 CIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDP 126 (138)
Q Consensus 91 ~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DP 126 (138)
=|.++|.+.+.+++++.|.... ....+...||..|
T Consensus 5 K~~v~d~~~~~~~l~~l~~~~~-~~~~q~d~Yfd~p 39 (169)
T cd07890 5 KARVDDLEALRERLAALGGAEG-GREFQEDIYFDHP 39 (169)
T ss_pred EEEeCCHHHHHHHHHhcccccc-cceeEeEEEEcCC
Confidence 3556778888888877544332 1223334455555
No 231
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=38.93 E-value=43 Score=20.22 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=19.9
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEE
Q 032565 88 RHTCIAIRDVSKLKMILDKAGISYT 112 (138)
Q Consensus 88 ~hi~~~v~d~~~~~~~l~~~g~~~~ 112 (138)
.|+-.+-+|++.+.+.|++.|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 4666666799999999999997653
No 232
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=38.80 E-value=1e+02 Score=19.57 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=37.0
Q ss_pred CCceEEEEECCHHHHHHHHHHCCCeEEe---c--------------C-------CCccEEEEECCCCCeEEEE
Q 032565 86 RDRHTCIAIRDVSKLKMILDKAGISYTL---S--------------K-------SGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~~g~~~~~---~--------------~-------~~~~~~~~~DPdG~~~e~~ 134 (138)
+...+++.+++.+...+-.++.|.++.- . . ...|+.|+.|+||.+..+.
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 4578899999999988888888887621 0 0 1347899999999987665
No 233
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=38.76 E-value=82 Score=20.90 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=23.1
Q ss_pred EECCHHHHHHHHHHCCCeEEecCCCccEEEEECCCC
Q 032565 93 AIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDA 128 (138)
Q Consensus 93 ~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG 128 (138)
.+.+.+++.+.|++.|+.+.....+...+.+.|.++
T Consensus 183 ~~~s~~~f~~~L~~~g~~v~~~~~~~~~~~~~~~~~ 218 (242)
T PF03432_consen 183 KSSSFEDFIERLEEKGIEVRRKRGKYISYKLKDKNK 218 (242)
T ss_pred hCCCHHHHHHHHHHCCCEEEEcCCCeEEEecCCCCc
Confidence 356888999999999999883333333333444433
No 234
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.58 E-value=70 Score=17.58 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=21.9
Q ss_pred CceEEEEEC--CHHHHHHHHHHCCCeEEec
Q 032565 87 DRHTCIAIR--DVSKLKMILDKAGISYTLS 114 (138)
Q Consensus 87 ~~hi~~~v~--d~~~~~~~l~~~g~~~~~~ 114 (138)
...++++++ +++++.++|++.|+.....
T Consensus 42 ~vlvGi~~~~~~~~~l~~~l~~~g~~~~dl 71 (81)
T cd04907 42 RVLVGIQVPDADLDELKERLDALGYPYQEE 71 (81)
T ss_pred eEEEEEEeChHHHHHHHHHHHHcCCCeEEC
Confidence 356777775 6788999999999987654
No 235
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.56 E-value=56 Score=16.48 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=17.7
Q ss_pred ceEEEEECC---HHHHHHHHHHCCCeEE
Q 032565 88 RHTCIAIRD---VSKLKMILDKAGISYT 112 (138)
Q Consensus 88 ~hi~~~v~d---~~~~~~~l~~~g~~~~ 112 (138)
.++.+.+.+ ++.+.+.|++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 345555554 5588999999998764
No 236
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=38.37 E-value=1.1e+02 Score=19.64 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=27.9
Q ss_pred ECCHHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCe
Q 032565 94 IRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANA 130 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~ 130 (138)
-.+.+.+.+.|++.|+++... ...+|.++|.--+|..
T Consensus 113 ~rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F~p~tG~v 152 (164)
T COG1871 113 ERNVEFAKEFLKDEGIPILAEDTGGDSGRTIEFNPSTGRV 152 (164)
T ss_pred hHHHHHHHHHHHHcCCcEEEhhhCCCCCcEEEEecCCCcE
Confidence 358889999999999999755 4456777776666654
No 237
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=36.91 E-value=69 Score=18.43 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=31.5
Q ss_pred CCceEEEEECCHHHHHHHHHHCCCeE--Eec----------CC------CccEEEEECCCCCeE
Q 032565 86 RDRHTCIAIRDVSKLKMILDKAGISY--TLS----------KS------GRPAIFTRDPDANAL 131 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~~g~~~--~~~----------~~------~~~~~~~~DPdG~~~ 131 (138)
+..-+++..++.++..+.+++.+..+ ... .. .....|+.||+|.+.
T Consensus 59 ~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 59 GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 45677888888888877777776543 221 01 446789999999864
No 238
>PRK14707 hypothetical protein; Provisional
Probab=36.77 E-value=64 Score=29.52 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHCCCeEEec-----C----CCccEEEEECCCCCeEEEE
Q 032565 96 DVSKLKMILDKAGISYTLS-----K----SGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 96 d~~~~~~~l~~~g~~~~~~-----~----~~~~~~~~~DPdG~~~e~~ 134 (138)
.+..+...|.++|.+.+.- . -.+-...++||+|..|||-
T Consensus 2357 ~~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEIQ 2404 (2710)
T PRK14707 2357 GLRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEIQ 2404 (2710)
T ss_pred HHHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEEE
Confidence 4667788999999987543 1 1233457799999999984
No 239
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=36.68 E-value=51 Score=23.37 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=20.9
Q ss_pred eeeeEEEEe------CCHHHHHHHHHHhhCCeee
Q 032565 17 SVHHVGILC------ENLERSLEFYQNILGLEIN 44 (138)
Q Consensus 17 ~l~hi~l~v------~d~~~a~~fy~~~lg~~~~ 44 (138)
.++|++..| .|+++..++.++ .|+..+
T Consensus 184 ~~NH~T~~v~~l~~~~dI~~v~~~l~~-~G~~~n 216 (302)
T PF07063_consen 184 HINHFTPRVNRLKKFLDIDAVNAFLKE-RGIPMN 216 (302)
T ss_dssp S-SEEEEETTT-TT-S-HHHHHHHHHH-TT--B-
T ss_pred ccceeeceeecccccccHHHHHHHHHH-cCCCcc
Confidence 589999999 999999999998 999998
No 240
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=36.31 E-value=36 Score=16.95 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhC
Q 032565 28 LERSLEFYQNILG 40 (138)
Q Consensus 28 ~~~a~~fy~~~lg 40 (138)
.+.+++||++.|-
T Consensus 15 ~q~sve~yk~kl~ 27 (57)
T PF04761_consen 15 YQESVEFYKEKLS 27 (57)
T ss_pred HHHHHHHHHHHHH
Confidence 4678899988764
No 241
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=36.18 E-value=56 Score=20.93 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=21.2
Q ss_pred eeeeeEEEEeC-CHHHHHHHHHHhhCCeeec
Q 032565 16 VSVHHVGILCE-NLERSLEFYQNILGLEINE 45 (138)
Q Consensus 16 ~~l~hi~l~v~-d~~~a~~fy~~~lg~~~~~ 45 (138)
.++..+.+.|. +-..+.+||++ +||+...
T Consensus 158 ~g~~~i~l~v~~~N~~a~~~yek-~Gf~~~~ 187 (194)
T PRK10975 158 RGLTRLRVATQMGNLAALRLYIR-SGANIES 187 (194)
T ss_pred cCCCEEEEEeCCCcHHHHHHHHH-CCCeEeE
Confidence 45667777763 34688999987 9998755
No 242
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=36.03 E-value=56 Score=19.71 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=21.6
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhhCCeeeccCC
Q 032565 17 SVHHVGILC-ENLERSLEFYQNILGLEINEARP 48 (138)
Q Consensus 17 ~l~hi~l~v-~d~~~a~~fy~~~lg~~~~~~~~ 48 (138)
++..+.+.| .+=.++.+||++ +||+......
T Consensus 110 ~~~~i~~~v~~~N~~~i~~~~~-~GF~~~g~~~ 141 (155)
T PF13420_consen 110 GIHKIYLEVFSSNEKAINFYKK-LGFEEEGELK 141 (155)
T ss_dssp T-CEEEEEEETT-HHHHHHHHH-TTEEEEEEEE
T ss_pred CeEEEEEEEecCCHHHHHHHHh-CCCEEEEEEe
Confidence 455566544 556889999997 9999887644
No 243
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=35.94 E-value=39 Score=14.48 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=11.6
Q ss_pred eCCHHHHHHHHHHh
Q 032565 25 CENLERSLEFYQNI 38 (138)
Q Consensus 25 v~d~~~a~~fy~~~ 38 (138)
-+|.+++..||++.
T Consensus 18 ~~d~~~A~~~~~~A 31 (36)
T smart00671 18 KKDLEKALEYYKKA 31 (36)
T ss_pred CcCHHHHHHHHHHH
Confidence 46999999999874
No 244
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=35.83 E-value=48 Score=21.22 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=20.7
Q ss_pred eeeeeEEEEeC-CHHHHHHHHHHhhCCeeec
Q 032565 16 VSVHHVGILCE-NLERSLEFYQNILGLEINE 45 (138)
Q Consensus 16 ~~l~hi~l~v~-d~~~a~~fy~~~lg~~~~~ 45 (138)
.++..|.+.|. +-..|.+||++ +||+...
T Consensus 155 ~g~~~I~l~v~~~N~~A~~~Y~k-lGF~~~~ 184 (191)
T TIGR02382 155 RGLTRLRVATQMGNTAALRLYIR-SGANIES 184 (191)
T ss_pred cCCCEEEEEeCCCCHHHHHHHHH-cCCcccc
Confidence 35666777763 33689999997 9997654
No 245
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.83 E-value=78 Score=17.28 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCCeEEec------CCCccEEEEECCCCCeE
Q 032565 97 VSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 97 ~~~~~~~l~~~g~~~~~~------~~~~~~~~~~DPdG~~~ 131 (138)
+-++...|.+.|+.+... .--...||++|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 456677888899887533 12335799999999865
No 246
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=35.34 E-value=1.1e+02 Score=18.71 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=31.6
Q ss_pred CCceEEEEECCHHHHHHHHHHCCCeEE--ec--------CC--------------CccEEEEECCCCCeEEEEe
Q 032565 86 RDRHTCIAIRDVSKLKMILDKAGISYT--LS--------KS--------------GRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 86 ~~~hi~~~v~d~~~~~~~l~~~g~~~~--~~--------~~--------------~~~~~~~~DPdG~~~e~~~ 135 (138)
+..-+++.+++.+++.+.+++.|.++. .. .+ ..+..++.||+|.+.....
T Consensus 64 ~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 64 GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 345677777777777777777766442 11 00 0145689999998887754
No 247
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=35.14 E-value=59 Score=16.58 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=10.9
Q ss_pred cEEEEECCCCCeEEEE
Q 032565 119 PAIFTRDPDANALEFT 134 (138)
Q Consensus 119 ~~~~~~DPdG~~~e~~ 134 (138)
..|.|.|.+|..+.+.
T Consensus 10 s~F~FYDen~~lVrv~ 25 (54)
T PF12142_consen 10 SSFLFYDENGQLVRVK 25 (54)
T ss_dssp -EEEEE-TTS-EEEEE
T ss_pred CeeEEECCCCCEEEEE
Confidence 3688999999998775
No 248
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=34.24 E-value=1.2e+02 Score=21.89 Aligned_cols=93 Identities=16% Similarity=0.022 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCC---CCCCCCCCceEE-EEECCHHHHHH
Q 032565 27 NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG---RPEHGGRDRHTC-IAIRDVSKLKM 102 (138)
Q Consensus 27 d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~hi~-~~v~d~~~~~~ 102 (138)
-+++.++|-.+-||+......... +-+..+-....+.+.+...-.+. .|.- +.+..-+ |.-.+-.+..+
T Consensus 54 ~~~~iR~FA~~~L~Lpdn~sY~~Y------adL~Rp~vvWnV~Aap~~sl~~~~WcFPi~-Gcv~YrGyF~~~~A~~~a~ 126 (337)
T PF10023_consen 54 LAQQIRRFASEELGLPDNGSYRSY------ADLDRPYVVWNVFAAPEFSLEPKTWCFPIV-GCVPYRGYFDEADARAEAA 126 (337)
T ss_pred HHHHHHHHHHHhcCCCCCCChhhh------hhcCCCcEEEEEEecCcccCCcceeecccc-ccccccCcCCHHHHHHHHH
Confidence 357788999999999876643311 11111112222222222111100 0110 1111112 22236777789
Q ss_pred HHHHCCCeEEec--CCCccEEEEECC
Q 032565 103 ILDKAGISYTLS--KSGRPAIFTRDP 126 (138)
Q Consensus 103 ~l~~~g~~~~~~--~~~~~~~~~~DP 126 (138)
.|+++|..+... +...+--+|.||
T Consensus 127 ~L~~~GlDv~v~gV~AYSTLGwF~DP 152 (337)
T PF10023_consen 127 ELRAQGLDVYVGGVPAYSTLGWFDDP 152 (337)
T ss_pred HHHHcCCceeEecccccccccccCCc
Confidence 999999987543 333333455665
No 249
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=34.19 E-value=88 Score=17.40 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=25.8
Q ss_pred EEC-CHHHHHHHHHHCCCeEEecCC-----CccEEEEECCCCCe
Q 032565 93 AIR-DVSKLKMILDKAGISYTLSKS-----GRPAIFTRDPDANA 130 (138)
Q Consensus 93 ~v~-d~~~~~~~l~~~g~~~~~~~~-----~~~~~~~~DPdG~~ 130 (138)
.|+ ++..+.+.|+++|+++..... +...+.+..-+.|.
T Consensus 5 AVE~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~ 48 (80)
T PF03698_consen 5 AVEEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNM 48 (80)
T ss_pred EecCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCccc
Confidence 454 789999999999999976522 33455555555443
No 250
>PRK10314 putative acyltransferase; Provisional
Probab=34.06 E-value=57 Score=20.21 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhCCeeecc
Q 032565 29 ERSLEFYQNILGLEINEA 46 (138)
Q Consensus 29 ~~a~~fy~~~lg~~~~~~ 46 (138)
..+..||++ +||.....
T Consensus 118 ~~a~~fY~k-~GF~~~g~ 134 (153)
T PRK10314 118 AHLQNFYQS-FGFIPVTE 134 (153)
T ss_pred HHHHHHHHH-CCCEECCC
Confidence 567899998 99988764
No 251
>PF14044 NETI: NETI protein
Probab=33.91 E-value=69 Score=16.53 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=17.4
Q ss_pred EEEC---CHHHHHHHHHHCCCeEEe
Q 032565 92 IAIR---DVSKLKMILDKAGISYTL 113 (138)
Q Consensus 92 ~~v~---d~~~~~~~l~~~g~~~~~ 113 (138)
|+|. .+++..+++++.|+.++.
T Consensus 2 FeV~enETI~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGYMPVR 26 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCCCcee
Confidence 4553 699999999999987653
No 252
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=33.71 E-value=52 Score=19.06 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=23.8
Q ss_pred ECCHHHHHHHHHHCCCeEEec--CCCccEEEEECCC
Q 032565 94 IRDVSKLKMILDKAGISYTLS--KSGRPAIFTRDPD 127 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPd 127 (138)
+++...+.+.|+++|+.+... .++.-.+.|.|++
T Consensus 45 ~~~~~~v~~~L~~~~I~~k~i~~~~~~llirf~~~~ 80 (101)
T PF13721_consen 45 LPDAFQVEQALKAAGIAVKSIEQEGDSLLIRFDSTD 80 (101)
T ss_pred CChHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHH
Confidence 456678899999999987533 4455556666654
No 253
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=33.60 E-value=55 Score=19.92 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHCCCeEEec--CCCccEEEEECCC
Q 032565 95 RDVSKLKMILDKAGISYTLS--KSGRPAIFTRDPD 127 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPd 127 (138)
++...+.+.|+++|+.+... .++.-.+.|.++|
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~ 84 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPE 84 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHH
Confidence 88999999999999987543 3444455666554
No 254
>PF05271 Tobravirus_2B: Tobravirus 2B protein; InterPro: IPR007935 This family consists of several tobravirus 2B proteins. It is known that the 2B protein is required for transmission by both Paratrichodorus pachydermus and Paratrichodorus anemones nematodes []. Transmission of the tobraviruses Tobacco rattle virus by trichodorid vector nematodes requires the viral coat protein (CP) and the 2B protein, a nonstructural protein encoded by RNA2, the smaller of the two viral genomic RNAs. It is hypothesized that the 2B protein functions by interacting with a small, flexible domain located at the C terminus of the CP, forming a bridge between the virus particle and the internal surface of the vector nematode feeding apparatus [].; GO: 0019089 transmission of virus
Probab=33.24 E-value=26 Score=20.37 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=19.2
Q ss_pred CceeeeeeeEEEEeCCHHHHHHHHHHhhC
Q 032565 12 DYGVVSVHHVGILCENLERSLEFYQNILG 40 (138)
Q Consensus 12 ~~~~~~l~hi~l~v~d~~~a~~fy~~~lg 40 (138)
+|+|...+.+-|+|.+ --..||++ ||
T Consensus 60 PMCINhkG~vyirV~~--~~d~yYQK-fG 85 (116)
T PF05271_consen 60 PMCINHKGWVYIRVKD--GEDVYYQK-FG 85 (116)
T ss_pred ceEEcccceEEEEecc--Cccchhhh-cc
Confidence 4778888888888984 44568887 54
No 255
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=33.12 E-value=79 Score=18.60 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.0
Q ss_pred eeEEEEeCCHHHHHHHHHHhh
Q 032565 19 HHVGILCENLERSLEFYQNIL 39 (138)
Q Consensus 19 ~hi~l~v~d~~~a~~fy~~~l 39 (138)
+.++|.-.|-++|++||+.+.
T Consensus 82 c~~GL~Fade~EA~~F~k~v~ 102 (105)
T cd01205 82 CVVGLNFADETEAAEFRKKVL 102 (105)
T ss_pred cEEEEEECCHHHHHHHHHHHH
Confidence 456677789999999999864
No 256
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=32.95 E-value=1.2e+02 Score=21.56 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=43.0
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCCeEEEEeecCCCCCCCCCCCCCCCCceEEEEECCHHHH
Q 032565 21 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 100 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~ 100 (138)
+.+.+-|+-+|..|+.++++.++..... ...+--+.|-+-+.++...++. +.+.-+.++++
T Consensus 171 fGVTtLDvVRA~tFv~~~~~~~p~~~v~-----VPVIGGHaG~TIlPLlSQ~~p~--------------~~~~~~~~~~L 231 (345)
T KOG1494|consen 171 FGVTTLDVVRANTFVAEVLNLDPAEDVD-----VPVIGGHAGITIIPLLSQCKPP--------------FRFTDDEIEAL 231 (345)
T ss_pred eceehhhhhhHHHHHHHHhCCCchhcCC-----cceecCcCCceEeeecccCCCc--------------ccCCHHHHHHH
Confidence 3456779999999999999998633211 1111111133334443222221 22333468888
Q ss_pred HHHHHHCCCeEEec
Q 032565 101 KMILDKAGISYTLS 114 (138)
Q Consensus 101 ~~~l~~~g~~~~~~ 114 (138)
..|.+..|-+++..
T Consensus 232 t~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 232 THRIQNGGTEVVKA 245 (345)
T ss_pred HHHHHhCCceEEEe
Confidence 88888888887653
No 257
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=31.72 E-value=32 Score=19.59 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHCCCe
Q 032565 96 DVSKLKMILDKAGIS 110 (138)
Q Consensus 96 d~~~~~~~l~~~g~~ 110 (138)
+++++.+.|+++|++
T Consensus 76 eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 76 EIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHHHcCCC
Confidence 566777888888875
No 258
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=31.47 E-value=52 Score=13.95 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=13.9
Q ss_pred EeCCHHHHHHHHHHhhCCe
Q 032565 24 LCENLERSLEFYQNILGLE 42 (138)
Q Consensus 24 ~v~d~~~a~~fy~~~lg~~ 42 (138)
.-.+.++|...|++.+.+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 13 QLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HTT-HHHHHHHHHHHHHHS
T ss_pred HhCCchHHHHHHHHHHHHC
Confidence 3578899999999877543
No 259
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=30.52 E-value=21 Score=19.38 Aligned_cols=15 Identities=13% Similarity=0.532 Sum_probs=12.8
Q ss_pred EEeCCHHHHHHHHHH
Q 032565 23 ILCENLERSLEFYQN 37 (138)
Q Consensus 23 l~v~d~~~a~~fy~~ 37 (138)
|.+.|++.++.||+.
T Consensus 4 i~I~dIE~AIN~WR~ 18 (71)
T PF12512_consen 4 ISITDIEAAINYWRA 18 (71)
T ss_pred cCHHHHHHHHHHHHh
Confidence 567899999999986
No 260
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=29.97 E-value=1.4e+02 Score=18.50 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=22.3
Q ss_pred eEEEEECCHHHHHHHHHHCCCeEEec--CCCccEEEEE
Q 032565 89 HTCIAIRDVSKLKMILDKAGISYTLS--KSGRPAIFTR 124 (138)
Q Consensus 89 hi~~~v~d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~ 124 (138)
-+++-+-|..+..+-++.+|+.+.+. ..++..||+.
T Consensus 37 ~~~pvc~D~~A~~k~lkr~gv~~~egl~t~~G~~fY~Y 74 (142)
T PF11633_consen 37 LLCPVCIDYPAFCKTLKRKGVDPKEGLQTVDGVQFYFY 74 (142)
T ss_dssp -EEEEETT-HHHHHHHHHTTS---SEEEES-SSEEEEE
T ss_pred cEEEEEeccHHHHHHHhccCcccccceEEecceEEEEE
Confidence 36777789999999999999988776 3334456664
No 261
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.60 E-value=96 Score=16.47 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=18.6
Q ss_pred EEEEE--CCHHHHHHHHHHCCCeEE
Q 032565 90 TCIAI--RDVSKLKMILDKAGISYT 112 (138)
Q Consensus 90 i~~~v--~d~~~~~~~l~~~g~~~~ 112 (138)
+++.+ +|.+.+.+.|++.|+.+.
T Consensus 43 ~al~~~~~d~~~i~~~l~~~~i~~~ 67 (73)
T PF11823_consen 43 LALRFEPEDLEKIKEILEENGIEYE 67 (73)
T ss_pred EEEEEChhhHHHHHHHHHHCCCCee
Confidence 56665 589999999999998764
No 262
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=29.42 E-value=67 Score=14.58 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=15.8
Q ss_pred CCCccEEEEECCCCCeEEEEee
Q 032565 115 KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 115 ~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+.|...-|-.|+.|++..+..+
T Consensus 13 ~~G~~~~y~YD~~g~l~~~t~~ 34 (38)
T PF05593_consen 13 PDGRTTRYTYDAAGRLTSVTDP 34 (38)
T ss_pred CCCCEEEEEECCCCCEEEEECC
Confidence 4566666888888888877654
No 263
>PHA02503 putative transcription regulator; Provisional
Probab=29.32 E-value=55 Score=16.23 Aligned_cols=12 Identities=42% Similarity=0.800 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhh
Q 032565 28 LERSLEFYQNIL 39 (138)
Q Consensus 28 ~~~a~~fy~~~l 39 (138)
.+.+++||++.|
T Consensus 15 ~q~sve~yke~l 26 (57)
T PHA02503 15 YQESVEFYKEKL 26 (57)
T ss_pred HHHHHHHHHHHH
Confidence 367888998866
No 264
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=29.05 E-value=77 Score=15.56 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=12.1
Q ss_pred CCccEEEEECCCCCeEE
Q 032565 116 SGRPAIFTRDPDANALE 132 (138)
Q Consensus 116 ~~~~~~~~~DPdG~~~e 132 (138)
.|...|.+.+.+|..|-
T Consensus 3 ~g~~~f~L~a~ng~via 19 (49)
T PF07411_consen 3 DGQFRFRLKAGNGEVIA 19 (49)
T ss_dssp TSEEEEEEE-TTS-EEE
T ss_pred CCCEEEEEEcCCCCEEE
Confidence 46677889999999886
No 265
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=28.65 E-value=1.1e+02 Score=22.13 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCeEEec--CCCccEEEEECCC
Q 032565 98 SKLKMILDKAGISYTLS--KSGRPAIFTRDPD 127 (138)
Q Consensus 98 ~~~~~~l~~~g~~~~~~--~~~~~~~~~~DPd 127 (138)
-...++|++.|++.+.. .++...+++.+|.
T Consensus 286 ~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~ 317 (336)
T KOG1515|consen 286 LAYAEKLKKAGVEVTLIHYEDGFHGFHILDPS 317 (336)
T ss_pred HHHHHHHHHcCCeEEEEEECCCeeEEEecCCc
Confidence 34578999999998853 7788999999997
No 266
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=28.53 E-value=57 Score=17.56 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=13.2
Q ss_pred ECCHHHHHHHHHHCCCeEEe
Q 032565 94 IRDVSKLKMILDKAGISYTL 113 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~ 113 (138)
+.+.+++.+.|++.|+.++.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQ 38 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQ 38 (70)
T ss_dssp --SHHHHHHHHHHTT-T--H
T ss_pred cCCHHHHHHHHHHcCCCcch
Confidence 45788999999999998753
No 267
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=28.44 E-value=58 Score=13.58 Aligned_cols=19 Identities=26% Similarity=0.523 Sum_probs=13.9
Q ss_pred EEeCCHHHHHHHHHHhhCC
Q 032565 23 ILCENLERSLEFYQNILGL 41 (138)
Q Consensus 23 l~v~d~~~a~~fy~~~lg~ 41 (138)
....+.++|+++|++.+.+
T Consensus 12 ~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 12 YQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHTT-HHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 3457889999999987654
No 268
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=28.36 E-value=68 Score=18.13 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=13.8
Q ss_pred eEEEEeCCHHHHHHHHHHhhCC
Q 032565 20 HVGILCENLERSLEFYQNILGL 41 (138)
Q Consensus 20 hi~l~v~d~~~a~~fy~~~lg~ 41 (138)
.-.+.+..-..+.+||++ +||
T Consensus 97 ~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 97 IRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEC-HHHHHHHHH-TT-
T ss_pred CcEEEEEeCHHHHHHHHh-CCC
Confidence 334566677888999987 775
No 269
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=27.91 E-value=1e+02 Score=18.40 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=20.7
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhhCCeeecc
Q 032565 17 SVHHVGILC-ENLERSLEFYQNILGLEINEA 46 (138)
Q Consensus 17 ~l~hi~l~v-~d~~~a~~fy~~~lg~~~~~~ 46 (138)
++.++.+.| ++-..+.+||++ +||+....
T Consensus 96 ~~~~~~~~~~~~N~~a~~~y~k-~Gf~~~~~ 125 (146)
T PRK09491 96 GVATLWLEVRASNAAAIALYES-LGFNEVTI 125 (146)
T ss_pred CCcEEEEEEccCCHHHHHHHHH-cCCEEeee
Confidence 455666655 344789999998 99987653
No 270
>PF00594 Gla: Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; InterPro: IPR000294 The GLA (gamma-carboxyglutamic acid-rich) domain contains glutamate residues that have been post-translationally modified by vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla) [, , ]. All glutamic acid (Glu) residues present in the GLA domain are potential carboxylation sites; in coagulation proteins, all Gu residues are modified to Gla, while in osteocalcin and matrix Gla proteins only some Glu residues are modified to Gla. The GLA domain is responsible for the high-affinity binding of calcium ions. It starts at the N-terminal extremity of the mature form of proteins and ends with a conserved aromatic residue; a conserved Gla-x(3)-Gla-x-Cys motif [] is found in the middle of the domain which seems to be important for substrate recognition by the carboxylase. The 3D structure of the GLA domain has been solved [, ]. Calcium ions induce conformational changes in the GLA domain that and are necessary for the proper folding of the GLA domain. A common structural feature of functional GLA domains is the clustering of N-terminal hydrophobic residues into a hydrophobic patch that mediates interaction with the cell surface membrane []. Proteins known to contain a GLA domain include []: Coagulation factor X [] Coagulation factor VII [] Coagulation factor IX [] Coagulation factor XIV (vitamin K-dependent protein C) [] Vitamin K-dependent protein S [] Vitamin K-dependent protein Z [] Prothrombin Transthyretin Osteocalcin (also known as bone-Gla protein, BGP) Matrix Gla protein (MGP) [] Inter-alpha-trypsin inhibitor heavy chain H2 Growth arrest-specific protein 6 (Gas-6) [] ; GO: 0005509 calcium ion binding, 0005576 extracellular region; PDB: 1Q3M_A 1VZM_C 2PF1_A 1NL2_A 1NL1_A 2SPT_A 2PF2_A 2ZP0_L 1W0Y_L 2AEI_L ....
Probab=27.88 E-value=72 Score=15.20 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHhhC
Q 032565 27 NLERSLEFYQNILG 40 (138)
Q Consensus 27 d~~~a~~fy~~~lg 40 (138)
|...+.+||+..+|
T Consensus 29 ~~~~t~~fw~~Y~g 42 (42)
T PF00594_consen 29 DTEGTNAFWKKYFG 42 (42)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred ChHhHHHHHHHhcC
Confidence 45677778877654
No 271
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=27.82 E-value=88 Score=21.43 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=20.8
Q ss_pred eeeeEEEEeC-CHHHHHHHHHHhhCCeeecc
Q 032565 17 SVHHVGILCE-NLERSLEFYQNILGLEINEA 46 (138)
Q Consensus 17 ~l~hi~l~v~-d~~~a~~fy~~~lg~~~~~~ 46 (138)
+...+.+.|. +-..+.+||++ +||+....
T Consensus 259 g~~~v~l~v~~~N~~a~~~y~k-~GF~~~~~ 288 (292)
T TIGR03448 259 GLPAVMLYVEADNEAAVRTYEK-LGFTVAEV 288 (292)
T ss_pred CCCEEEEEEeCCCHHHHHHHHH-cCCEEccc
Confidence 5666677663 33689999987 99987653
No 272
>PRK10514 putative acetyltransferase; Provisional
Probab=27.73 E-value=89 Score=18.58 Aligned_cols=21 Identities=19% Similarity=0.574 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHhhCCeeeccCC
Q 032565 27 NLERSLEFYQNILGLEINEARP 48 (138)
Q Consensus 27 d~~~a~~fy~~~lg~~~~~~~~ 48 (138)
+-.++.+||++ +||+......
T Consensus 108 ~N~~a~~~yek-~Gf~~~~~~~ 128 (145)
T PRK10514 108 QNEQAVGFYKK-MGFKVTGRSE 128 (145)
T ss_pred CCHHHHHHHHH-CCCEEecccc
Confidence 33689999987 9999876544
No 273
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=27.68 E-value=1.3e+02 Score=17.50 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=24.0
Q ss_pred CCCCCCce-EEEEECCHHHHHHHHHHCCCeEEe
Q 032565 82 EHGGRDRH-TCIAIRDVSKLKMILDKAGISYTL 113 (138)
Q Consensus 82 ~~~~~~~h-i~~~v~d~~~~~~~l~~~g~~~~~ 113 (138)
..+..+.. +.+..++.+++.+.++++|+.+..
T Consensus 42 ss~D~~~q~v~l~F~skE~Ai~yaer~G~~Y~V 74 (101)
T PF04800_consen 42 SSGDPLSQSVRLKFDSKEDAIAYAERNGWDYEV 74 (101)
T ss_dssp SS--SEEE-CEEEESSHHHHHHHHHHCT-EEEE
T ss_pred CCCChhhCeeEeeeCCHHHHHHHHHHcCCeEEE
Confidence 34455565 888999999999999999998854
No 274
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=27.61 E-value=1.8e+02 Score=20.75 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=24.1
Q ss_pred EEEeCCHHHHHHHHHHhhCCeeeccCCCCCC
Q 032565 22 GILCENLERSLEFYQNILGLEINEARPHDKL 52 (138)
Q Consensus 22 ~l~v~d~~~a~~fy~~~lg~~~~~~~~~~~~ 52 (138)
++.+.|.++++.|+.+.||+.++-.....+.
T Consensus 137 T~i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~ 167 (318)
T COG0189 137 TLITRDPDEAAEFVAEHLGFPVVLKPLDGSG 167 (318)
T ss_pred EEEEcCHHHHHHHHHHhcCCCEEEeeCCCCC
Confidence 4678888999999999999988865544443
No 275
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=27.49 E-value=58 Score=18.90 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=14.9
Q ss_pred EeCCHHHHHHHHHHhhCCe
Q 032565 24 LCENLERSLEFYQNILGLE 42 (138)
Q Consensus 24 ~v~d~~~a~~fy~~~lg~~ 42 (138)
..+++.++.+||.+ +||-
T Consensus 33 G~~~~~~~L~YY~~-igWI 50 (99)
T PF04659_consen 33 GHNNAADALDYYES-IGWI 50 (99)
T ss_pred ccccHHHHHHHHHH-cCCc
Confidence 46788999999998 8874
No 276
>PHA00212 putative transcription regulator
Probab=27.06 E-value=62 Score=16.38 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhh
Q 032565 28 LERSLEFYQNIL 39 (138)
Q Consensus 28 ~~~a~~fy~~~l 39 (138)
.+.+++||++.|
T Consensus 17 ~q~sve~yk~~l 28 (63)
T PHA00212 17 QQHSVEWYKKQL 28 (63)
T ss_pred HHHHHHHHHHHH
Confidence 367888888866
No 277
>PHA02097 hypothetical protein
Probab=26.83 E-value=72 Score=16.01 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=10.7
Q ss_pred EEEECCCCCeEEEEe
Q 032565 121 IFTRDPDANALEFTQ 135 (138)
Q Consensus 121 ~~~~DPdG~~~e~~~ 135 (138)
-.+.||.||-++++.
T Consensus 44 kvv~~~n~ng~~~~h 58 (59)
T PHA02097 44 KVVKDANYNGFELVH 58 (59)
T ss_pred EEEecCCCCcEEEec
Confidence 346788888888764
No 278
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=26.75 E-value=1.4e+02 Score=17.54 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHCCCeEEec------CCCccEEEEECCCCCeEEEEee
Q 032565 95 RDVSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~------~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
.+....+.+|++.| .+..+ ..|.-.....|++|.+.+-...
T Consensus 24 k~f~~~~~~l~~~G-~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M 70 (109)
T PF06923_consen 24 KNFNKAYKELRKKG-RVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIM 70 (109)
T ss_pred HHHHHHHHHHHhCC-cEEEeeecCcccCCeEEEEEECCCCcEEEEEEE
Confidence 35667788999888 34322 3344556778999998886554
No 279
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=26.54 E-value=84 Score=17.99 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=21.1
Q ss_pred eeeeEEEEeC-CHHHHHHHHHHhhCCeeeccCC
Q 032565 17 SVHHVGILCE-NLERSLEFYQNILGLEINEARP 48 (138)
Q Consensus 17 ~l~hi~l~v~-d~~~a~~fy~~~lg~~~~~~~~ 48 (138)
++.++.+.+. .-..+.+||++ +||+......
T Consensus 87 ~~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~~ 118 (131)
T TIGR01575 87 GVNEIFLEVRVSNIAAQALYKK-LGFNEIAIRR 118 (131)
T ss_pred CCCeEEEEEecccHHHHHHHHH-cCCCcccccc
Confidence 3566666553 34678899987 9998776533
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=26.26 E-value=66 Score=13.50 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=13.4
Q ss_pred eCCHHHHHHHHHHhhCC
Q 032565 25 CENLERSLEFYQNILGL 41 (138)
Q Consensus 25 v~d~~~a~~fy~~~lg~ 41 (138)
-.|.++|..+|++.+.+
T Consensus 14 ~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 14 LGDYEEALEYFEKALEL 30 (34)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 46889999999887644
No 281
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=26.05 E-value=50 Score=16.66 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=14.0
Q ss_pred eCCHHHHHHHHHHhhCC
Q 032565 25 CENLERSLEFYQNILGL 41 (138)
Q Consensus 25 v~d~~~a~~fy~~~lg~ 41 (138)
.+.++...+||++.|-|
T Consensus 37 ~k~P~~vI~FYE~~l~~ 53 (54)
T cd00034 37 VKCPLLVISFYEEHLTY 53 (54)
T ss_pred hhCcHHHHHHHHHhccc
Confidence 56788999999998765
No 282
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=25.99 E-value=1.4e+02 Score=20.81 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHCCCeEEec---CCCccEEEEECCC
Q 032565 96 DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPD 127 (138)
Q Consensus 96 d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPd 127 (138)
.-+++.+.+++.|+.+.+. ..-..++|.+||.
T Consensus 39 Qh~~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~~ 73 (267)
T COG1834 39 QHEALVEALEKNGVEVHLLPPIEGLPDQVFTRDPG 73 (267)
T ss_pred HHHHHHHHHHHCCCEEEEcCcccCCCcceEeccce
Confidence 4566788999999999764 2334578888883
No 283
>PHA02754 hypothetical protein; Provisional
Probab=25.91 E-value=1.1e+02 Score=15.86 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=25.5
Q ss_pred HHHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEee
Q 032565 97 VSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 97 ~~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
+.++.++|.++|+-+... ...+.-+.+...||..+|+.+.
T Consensus 20 MRelkD~LSe~GiYi~RIkai~~SGdkIVVi~aD~I~i~ls~T 62 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKAITTSGDKIVVITADAIKIELSET 62 (67)
T ss_pred HHHHHHHHhhCceEEEEEEEEEecCCEEEEEEcceEEEEEEee
Confidence 345667788888755332 2233346667778999988764
No 284
>PRK10562 putative acetyltransferase; Provisional
Probab=25.90 E-value=1.6e+02 Score=17.64 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=18.4
Q ss_pred EEEEe-CCHHHHHHHHHHhhCCeeeccC
Q 032565 21 VGILC-ENLERSLEFYQNILGLEINEAR 47 (138)
Q Consensus 21 i~l~v-~d~~~a~~fy~~~lg~~~~~~~ 47 (138)
+.+.| .+=..+.+||++ +||+.....
T Consensus 100 ~~~~v~~~N~~s~~~y~k-~Gf~~~~~~ 126 (145)
T PRK10562 100 LSLEVYQKNQRAVNFYHA-QGFRIVDSA 126 (145)
T ss_pred EEEEEEcCChHHHHHHHH-CCCEEcccc
Confidence 33443 344689999998 999987653
No 285
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=25.61 E-value=82 Score=14.33 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=11.1
Q ss_pred CCCccEEEEECCCCCeEEEEe
Q 032565 115 KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 115 ~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+.|...-|-.|..|++++...
T Consensus 13 p~G~~~~~~YD~~Grl~~~td 33 (42)
T TIGR01643 13 ADGTTTRYTYDAAGRLVEITD 33 (42)
T ss_pred CCCCEEEEEECCCCCEEEEEC
Confidence 334445555566666655543
No 286
>smart00300 ChSh Chromo Shadow Domain.
Probab=25.28 E-value=56 Score=16.93 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=14.6
Q ss_pred eCCHHHHHHHHHHhhCCe
Q 032565 25 CENLERSLEFYQNILGLE 42 (138)
Q Consensus 25 v~d~~~a~~fy~~~lg~~ 42 (138)
.+.++..++||++.|-|.
T Consensus 43 ~k~P~~vI~FYE~~l~~~ 60 (61)
T smart00300 43 VKCPQKVIRFYESHLTFQ 60 (61)
T ss_pred HHChHHHHHHHHHhCccC
Confidence 567889999999988653
No 287
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=25.22 E-value=1.9e+02 Score=19.78 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHCCCeEEec-------------CCCccEEEEECCCCCeE
Q 032565 95 RDVSKLKMILDKAGISYTLS-------------KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~-------------~~~~~~~~~~DPdG~~~ 131 (138)
++..+..++|.+.|+++... ..++..+++.+|||..+
T Consensus 21 ~~~p~~~~~l~~~g~~v~~~~~~p~~l~g~~~~~~~~~~i~Y~t~dg~y~ 70 (251)
T PRK11657 21 EELPAPVKALEKQGITIIKTFDAPGGLKGYAAKYQDMGVTIYLTPDGKHA 70 (251)
T ss_pred hcccHHHHHHHhCCCEEEEeecCCCCceEEEEEeCCCceEEEEcCCCCEE
Confidence 57788889999999988542 12333466778888644
No 288
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=25.10 E-value=77 Score=24.20 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=21.1
Q ss_pred eeeEEEEeCCHHHHHHHHHHhhCCee
Q 032565 18 VHHVGILCENLERSLEFYQNILGLEI 43 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~~lg~~~ 43 (138)
-+.+.+.-.|++++.+||++.|.-..
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCch
Confidence 45677888999999999999886543
No 289
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=25.02 E-value=47 Score=14.58 Aligned_cols=13 Identities=15% Similarity=0.695 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHh
Q 032565 26 ENLERSLEFYQNI 38 (138)
Q Consensus 26 ~d~~~a~~fy~~~ 38 (138)
.|.+++..||++.
T Consensus 22 ~d~~~A~~~~~~A 34 (39)
T PF08238_consen 22 KDYEKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccchHHHHHHH
Confidence 4789999999864
No 290
>PHA02978 hypothetical protein; Provisional
Probab=25.01 E-value=89 Score=18.41 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=12.9
Q ss_pred EEEEECCCCCeEEEEeec
Q 032565 120 AIFTRDPDANALEFTQVD 137 (138)
Q Consensus 120 ~~~~~DPdG~~~e~~~~~ 137 (138)
.+...||||.-+.+.+++
T Consensus 76 y~sy~~~~gisiqvst~~ 93 (135)
T PHA02978 76 YFSYADPDGISIQVSTPK 93 (135)
T ss_pred EEEecCCCceEEEEeCCC
Confidence 355579999888876543
No 291
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=24.99 E-value=1.3e+02 Score=18.08 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=22.3
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhhCCeeeccCC
Q 032565 17 SVHHVGILC-ENLERSLEFYQNILGLEINEARP 48 (138)
Q Consensus 17 ~l~hi~l~v-~d~~~a~~fy~~~lg~~~~~~~~ 48 (138)
++..+.+.| ++=..+.+||++ +||+......
T Consensus 109 ~~~~i~~~v~~~N~~s~~~y~k-~Gf~~~g~~~ 140 (156)
T TIGR03585 109 GLHKLSLEVLEFNNKALKLYEK-FGFEREGVFR 140 (156)
T ss_pred CeeEEEEEEeccCHHHHHHHHH-cCCeEeeeeh
Confidence 566666654 455888999997 9998776433
No 292
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=24.36 E-value=2.5e+02 Score=20.99 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=25.9
Q ss_pred HHHHHHHHHHCCCeEEec------CCCccEEEEECCCCCeE
Q 032565 97 VSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANAL 131 (138)
Q Consensus 97 ~~~~~~~l~~~g~~~~~~------~~~~~~~~~~DPdG~~~ 131 (138)
++.+..++++.|+++... ......|.+..++|-.|
T Consensus 114 v~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i 154 (408)
T COG2081 114 VDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETV 154 (408)
T ss_pred HHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEE
Confidence 788899999999998543 11225788899998643
No 293
>PF07566 DUF1543: Domain of Unknown Function (DUF1543); InterPro: IPR011440 This domain is found as 1-2 copies in a small family of proteins of unknown function.; PDB: 2QSD_F.
Probab=24.06 E-value=56 Score=16.36 Aligned_cols=22 Identities=5% Similarity=0.049 Sum_probs=16.6
Q ss_pred ceEEEEE-CCHHHHHHHHHHCCC
Q 032565 88 RHTCIAI-RDVSKLKMILDKAGI 109 (138)
Q Consensus 88 ~hi~~~v-~d~~~~~~~l~~~g~ 109 (138)
+.+.|.| ++++++..++++.-.
T Consensus 6 Hd~~fvVa~s~~ea~~~~k~~W~ 28 (52)
T PF07566_consen 6 HDVRFVVAESIEEAKPKAKQRWF 28 (52)
T ss_dssp ECEEEEEESSCHHHHHHHHCC-S
T ss_pred eeeEEEEECCHHHHHHHHHHhhh
Confidence 5677877 489999999987654
No 294
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=24.03 E-value=80 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=23.2
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhhCCeee
Q 032565 17 SVHHVGILCENLERSLEFYQNILGLEIN 44 (138)
Q Consensus 17 ~l~hi~l~v~d~~~a~~fy~~~lg~~~~ 44 (138)
.=.++-|.+-.-++|.+||++.+|....
T Consensus 432 as~~Lplhi~~t~~Ae~~y~~~~G~rll 459 (572)
T KOG1249|consen 432 ASEQLPLHIGPTEEAEAFYEKHLGTRLL 459 (572)
T ss_pred ecCcceeeecchhhHHHHHHHhcCCeee
Confidence 3455667778889999999999999877
No 295
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=24.03 E-value=1.4e+02 Score=16.35 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=13.1
Q ss_pred CCCccEEEEECCCCCeEEEEee
Q 032565 115 KSGRPAIFTRDPDANALEFTQV 136 (138)
Q Consensus 115 ~~~~~~~~~~DPdG~~~e~~~~ 136 (138)
..+.-.+.+..|+|....+...
T Consensus 14 ~~gdL~i~L~SP~Gt~~~L~~~ 35 (87)
T PF01483_consen 14 YRGDLRITLISPSGTRSTLKDR 35 (87)
T ss_dssp SGGGEEEEEE-TT--EEEEE-S
T ss_pred CcCCEEEEEECCCCCEEEEECC
Confidence 4455678888899888887754
No 296
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=24.00 E-value=74 Score=24.20 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=13.4
Q ss_pred ccEEEEECCCCCeEEEE
Q 032565 118 RPAIFTRDPDANALEFT 134 (138)
Q Consensus 118 ~~~~~~~DPdG~~~e~~ 134 (138)
.-.+.|.||||+++.+-
T Consensus 205 hA~I~l~dPdG~~~vf~ 221 (538)
T COG1389 205 HARIVLKDPDGNLVVFP 221 (538)
T ss_pred ceEEEEECCCCcEEEec
Confidence 34689999999988663
No 297
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=23.81 E-value=1.5e+02 Score=16.79 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=20.9
Q ss_pred ceEEEEECCH---HHHHHHHHHCCCeEEec-CCCccEEEEECCC
Q 032565 88 RHTCIAIRDV---SKLKMILDKAGISYTLS-KSGRPAIFTRDPD 127 (138)
Q Consensus 88 ~hi~~~v~d~---~~~~~~l~~~g~~~~~~-~~~~~~~~~~DPd 127 (138)
.|+-|.+++- +.+.+.|++.|++.... ..+...+|++|.+
T Consensus 22 YhLEi~~~~~e~a~~l~~lL~~~~i~~k~~~r~~~~~vYlK~~e 65 (93)
T PF14527_consen 22 YHLEIRFNDEEFAEQLKELLNKFGINAKIIKRKNKYVVYLKDSE 65 (93)
T ss_dssp --EEEEES-HHHHHHHHHHHHHH----EEEEESSEEEEEE--HH
T ss_pred eEEEEecCCHHHHHHHHHHHHHcCCCceeeeecCceEEEEcCHH
Confidence 7899988863 34466777778876543 5566788888754
No 298
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=23.77 E-value=92 Score=16.55 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=18.9
Q ss_pred CceEEEEEC----CHHHHHHHHHHCCCeEE
Q 032565 87 DRHTCIAIR----DVSKLKMILDKAGISYT 112 (138)
Q Consensus 87 ~~hi~~~v~----d~~~~~~~l~~~g~~~~ 112 (138)
..++.++++ +++++.+.|+++|+.++
T Consensus 45 ~G~l~l~l~g~~~~~~~a~~~L~~~~v~vE 74 (76)
T PF09383_consen 45 FGILILELPGDDEEIEKAIAYLREQGVEVE 74 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHHHHHCCCeEE
Confidence 344555552 47889999999998764
No 299
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=23.44 E-value=1.1e+02 Score=23.71 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=21.7
Q ss_pred eeeeeEEEEe-CCHHHHHHHHHHhhCCeeec
Q 032565 16 VSVHHVGILC-ENLERSLEFYQNILGLEINE 45 (138)
Q Consensus 16 ~~l~hi~l~v-~d~~~a~~fy~~~lg~~~~~ 45 (138)
.+...+.+.| .+-.++.+||++ |||+...
T Consensus 187 ~G~~~i~L~V~~~N~~Ai~fY~k-lGf~~~~ 216 (547)
T TIGR03103 187 RGCAYMDLSVMHDNEQAIALYEK-LGFRRIP 216 (547)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHH-CCCEEee
Confidence 4566777776 355789999987 9998653
No 300
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=23.39 E-value=2.2e+02 Score=21.96 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=18.1
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeeeccCC
Q 032565 21 VGILCENLERSLEFYQNILGLEINEARP 48 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~~lg~~~~~~~~ 48 (138)
+.|+.-=--..++|-++++|++-.....
T Consensus 376 lGIClGmQ~aviE~ARnv~Gl~~AnS~E 403 (533)
T COG0504 376 LGICLGMQLAVIEFARNVLGLEGANSTE 403 (533)
T ss_pred EEEchhHHHHHHHHHHHhcCCccCcccc
Confidence 3344443456778888999998765544
No 301
>PF11746 DUF3303: Protein of unknown function (DUF3303); InterPro: IPR021734 Several members are annotated as being LysM domain-like proteins, but these did not match any LysM domains reported in the literature.
Probab=23.07 E-value=1.6e+02 Score=16.68 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=22.5
Q ss_pred HHHHHHHHCCCeEEecCCCccEEEEECC-CCCeEEEEeec
Q 032565 99 KLKMILDKAGISYTLSKSGRPAIFTRDP-DANALEFTQVD 137 (138)
Q Consensus 99 ~~~~~l~~~g~~~~~~~~~~~~~~~~DP-dG~~~e~~~~~ 137 (138)
+..+++.+.|.+-..+.+-..-....+| .|..+-|++.+
T Consensus 19 ~~~~~~~~~G~~~~~peG~~~l~rw~~~~~g~g~~i~ead 58 (91)
T PF11746_consen 19 KAFERFMESGAPGDPPEGFKVLGRWHDPGGGRGFAIVEAD 58 (91)
T ss_pred HHHHHHHhcCCCCCCCCCEEEEEEEEecCCCcEEEEEEeC
Confidence 5677888888443333322223456677 46667777653
No 302
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=22.90 E-value=2.6e+02 Score=19.15 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=24.9
Q ss_pred HHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEE
Q 032565 98 SKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFT 134 (138)
Q Consensus 98 ~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~ 134 (138)
+.+.+.|++.|+..... ......+++.|++|.+..+.
T Consensus 64 ~~~~~~L~~~gId~~~~~~~~~t~~~~~~~~~~g~~~~~~ 103 (304)
T TIGR03828 64 DFIEALLREEGIKTDFVRVPGETRINVKIKEPSGTETKLN 103 (304)
T ss_pred HHHHHHHHHCCCcceEEECCCCCeeeEEEEeCCCCEEEEE
Confidence 46778999999976432 22344567788888776554
No 303
>PRK09831 putative acyltransferase; Provisional
Probab=22.78 E-value=97 Score=18.68 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhCCeeeccCC
Q 032565 29 ERSLEFYQNILGLEINEARP 48 (138)
Q Consensus 29 ~~a~~fy~~~lg~~~~~~~~ 48 (138)
..+..||++ +||.......
T Consensus 110 ~~a~~~Y~k-~Gf~~~g~~~ 128 (147)
T PRK09831 110 ITAKPFFER-YGFQTVKQQR 128 (147)
T ss_pred hhhHHHHHH-CCCEEeeccc
Confidence 578999998 9999887643
No 304
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=22.75 E-value=82 Score=20.05 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=13.3
Q ss_pred cEEEEECCCCCeEEEEe
Q 032565 119 PAIFTRDPDANALEFTQ 135 (138)
Q Consensus 119 ~~~~~~DPdG~~~e~~~ 135 (138)
..+|+.||+|.+...+.
T Consensus 156 ~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 156 AFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp SEEEEE-TTSEEEEEEC
T ss_pred cEEEEEcCCCcEEEEEc
Confidence 47899999999888764
No 305
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=22.72 E-value=1e+02 Score=15.96 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=14.0
Q ss_pred EEEEeCCHHHHHHHHHH
Q 032565 21 VGILCENLERSLEFYQN 37 (138)
Q Consensus 21 i~l~v~d~~~a~~fy~~ 37 (138)
+.|.=++.+.+++||.+
T Consensus 42 viieFPs~~aa~~~~~s 58 (65)
T PF07045_consen 42 VIIEFPSMEAAKAWYNS 58 (65)
T ss_dssp EEEEESSHHHHHHHHCS
T ss_pred EEEECCCHHHHHHHHCC
Confidence 55667999999999964
No 306
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=22.58 E-value=1.5e+02 Score=18.61 Aligned_cols=31 Identities=16% Similarity=0.446 Sum_probs=22.4
Q ss_pred eeeeEEEEeC-CHHHHHHHHHHhhCCeeeccCC
Q 032565 17 SVHHVGILCE-NLERSLEFYQNILGLEINEARP 48 (138)
Q Consensus 17 ~l~hi~l~v~-d~~~a~~fy~~~lg~~~~~~~~ 48 (138)
++..|.+.|. +-.+|.+||++ +||+......
T Consensus 116 ~~~rv~~~v~~~N~~s~~~yek-~GF~~~~~~~ 147 (186)
T PRK15130 116 NLYKLYLIVDKENEKAIHIYRK-LGFEVEGELI 147 (186)
T ss_pred CceEEEEEEccCCHHHHHHHHH-CCCEEEEEEe
Confidence 4666777764 44689999998 9998876533
No 307
>PF15590 Imm15: Immunity protein 15
Probab=22.52 E-value=42 Score=17.99 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=12.6
Q ss_pred ccEEEEECC-CCCeEEEEe
Q 032565 118 RPAIFTRDP-DANALEFTQ 135 (138)
Q Consensus 118 ~~~~~~~DP-dG~~~e~~~ 135 (138)
+....|+|| ||..|+.+-
T Consensus 24 ~We~~y~DP~D~r~W~~~~ 42 (69)
T PF15590_consen 24 GWETLYQDPRDGRYWEKSY 42 (69)
T ss_pred chhhhccCCCCCceeEEec
Confidence 446788899 577777653
No 308
>PLN00139 hypothetical protein; Provisional
Probab=22.52 E-value=1.4e+02 Score=21.27 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=22.8
Q ss_pred EEEECCHHHHHHHHHHCCCeEEecCCCc
Q 032565 91 CIAIRDVSKLKMILDKAGISYTLSKSGR 118 (138)
Q Consensus 91 ~~~v~d~~~~~~~l~~~g~~~~~~~~~~ 118 (138)
+|.++|-+++-+.+++.|+++.|..++.
T Consensus 194 ~F~t~d~~eve~~~~~~g~~~eW~~dg~ 221 (320)
T PLN00139 194 AFGTSDKAEAERRAKALGMDMEWLPNGG 221 (320)
T ss_pred HhCCCCHHHHHHHHHHcCCeEEEcCCCc
Confidence 3567789999999999999999875553
No 309
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=22.35 E-value=1.7e+02 Score=16.92 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHCCCeEE
Q 032565 96 DVSKLKMILDKAGISYT 112 (138)
Q Consensus 96 d~~~~~~~l~~~g~~~~ 112 (138)
++.++..+|.+.|...+
T Consensus 22 d~~~L~~~lt~~GF~~t 38 (96)
T PF11080_consen 22 DINELNNHLTRAGFSTT 38 (96)
T ss_pred HHHHHHHHHHhcCceeE
Confidence 68888999999987543
No 310
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=22.31 E-value=1.1e+02 Score=18.83 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=19.1
Q ss_pred eeeEEEEe-CCHHHHHHHHHHhhCCeeec
Q 032565 18 VHHVGILC-ENLERSLEFYQNILGLEINE 45 (138)
Q Consensus 18 l~hi~l~v-~d~~~a~~fy~~~lg~~~~~ 45 (138)
..++.+.| .+-..+.+||++ +|++...
T Consensus 100 ~~~i~~~v~~~N~~a~~ly~k-~G~~~~~ 127 (157)
T TIGR02406 100 VRHLETTITPDNQASRALFKA-LARRRGV 127 (157)
T ss_pred CCEEEEEEcCCCHHHHHHHHH-hCcccCC
Confidence 45566665 455788899987 9997644
No 311
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=22.29 E-value=82 Score=18.56 Aligned_cols=14 Identities=43% Similarity=0.506 Sum_probs=11.5
Q ss_pred ccEEEEECCCCCeE
Q 032565 118 RPAIFTRDPDANAL 131 (138)
Q Consensus 118 ~~~~~~~DPdG~~~ 131 (138)
..-..++|+||+++
T Consensus 18 ~~RARlyd~dG~Ll 31 (112)
T PF13756_consen 18 RTRARLYDPDGNLL 31 (112)
T ss_pred CceEEEECCCCCEE
Confidence 44689999999976
No 312
>COG3042 Hlx Putative hemolysin [General function prediction only]
Probab=22.27 E-value=1.6e+02 Score=16.59 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=22.9
Q ss_pred HHHHHHHCCCeEEe--cCCCccEEEEECCCCCeEE
Q 032565 100 LKMILDKAGISYTL--SKSGRPAIFTRDPDANALE 132 (138)
Q Consensus 100 ~~~~l~~~g~~~~~--~~~~~~~~~~~DPdG~~~e 132 (138)
......++|..... ...|+...+-.-|||.++|
T Consensus 39 As~yC~~~GG~l~~~~~~~G~~~~~C~LPdGr~~e 73 (85)
T COG3042 39 ASVYCAQQGGTLEAVKREDGGVVGMCVLPDGRICE 73 (85)
T ss_pred HHHHHHHhCCeeeeEEccCCCEEEEEECCCCcccH
Confidence 34455677776643 3667778888999998765
No 313
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=22.17 E-value=80 Score=15.14 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=10.4
Q ss_pred ECCHHHHHHHHHH
Q 032565 94 IRDVSKLKMILDK 106 (138)
Q Consensus 94 v~d~~~~~~~l~~ 106 (138)
-+|+|++...+.+
T Consensus 20 PPDLdel~r~l~~ 32 (42)
T PF12221_consen 20 PPDLDELFRKLQD 32 (42)
T ss_pred CCCHHHHHHHHHH
Confidence 4699999888765
No 314
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=22.17 E-value=2.5e+02 Score=18.66 Aligned_cols=45 Identities=11% Similarity=0.299 Sum_probs=32.1
Q ss_pred EEEEE--CCHHHHHHHHHHCCCeEEecCCCccEEEEECCCCCeEEEEe
Q 032565 90 TCIAI--RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 90 i~~~v--~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+-+-| +|++.+.+.|.+.|+..... ......|...+.|..+|+..
T Consensus 97 iDlLV~~~d~~~a~~~L~~~Gy~~~~~-~~~~~~~~~~~~~~~idlH~ 143 (249)
T PF14907_consen 97 IDLLVPPEDLERAVELLEELGYRIESP-SEHHWVYSHEPKGISIDLHW 143 (249)
T ss_pred eEEEEeCCcHHHHHHHHHHcCCEeccC-CCcceEEEecCCCEEEEEEe
Confidence 55555 59999999999999987664 33344444447788888754
No 315
>PRK04280 arginine repressor; Provisional
Probab=22.15 E-value=1e+02 Score=19.24 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.8
Q ss_pred ECCHHHHHHHHHHCCCeEEe
Q 032565 94 IRDVSKLKMILDKAGISYTL 113 (138)
Q Consensus 94 v~d~~~~~~~l~~~g~~~~~ 113 (138)
+.+.+++.+.|++.|+.++.
T Consensus 18 I~tQeeL~~~L~~~Gi~vTQ 37 (148)
T PRK04280 18 IETQDELVDRLREEGFNVTQ 37 (148)
T ss_pred CCCHHHHHHHHHHcCCCeeh
Confidence 45789999999999998753
No 316
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=21.56 E-value=2.8e+02 Score=19.05 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCeEEec---CCCccEEEEECCCCCeEEEEe
Q 032565 98 SKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 98 ~~~~~~l~~~g~~~~~~---~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+.+.+.|++.|+.+... ......+++.|++|....+..
T Consensus 64 ~~i~~~l~~~gI~~~~i~~~~~t~~~~~~~~~~g~~~~~~~ 104 (303)
T TIGR03168 64 EFIEALLAEEGIKNDFVEVKGETRINVKIKESSGEETELNE 104 (303)
T ss_pred HHHHHHHHHcCCCceEEECCCCCEEeEEEEeCCCCEEEEeC
Confidence 44678999999876432 223456777888888776643
No 317
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=21.47 E-value=1.5e+02 Score=18.38 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCeEEecCCC
Q 032565 97 VSKLKMILDKAGISYTLSKSG 117 (138)
Q Consensus 97 ~~~~~~~l~~~g~~~~~~~~~ 117 (138)
-|.+.+.|.+.|+.+...+.|
T Consensus 131 AD~IRd~L~~~Gi~i~Dt~~G 151 (156)
T cd07963 131 ADRIRDELAAQGIILEDSPEG 151 (156)
T ss_pred HHHHHHHHHHCCcEEEECCCC
Confidence 566788999999998876544
No 318
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=21.45 E-value=1.4e+02 Score=16.57 Aligned_cols=22 Identities=18% Similarity=0.156 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHCCCeEEecCC
Q 032565 95 RDVSKLKMILDKAGISYTLSKS 116 (138)
Q Consensus 95 ~d~~~~~~~l~~~g~~~~~~~~ 116 (138)
.++....++|++.|+++...+.
T Consensus 34 taVwK~Iq~Lr~~G~~I~s~~~ 55 (79)
T COG1654 34 TAVWKHIQQLREEGVDIESVRG 55 (79)
T ss_pred HHHHHHHHHHHHhCCceEecCC
Confidence 3677788999999999976644
No 319
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=21.23 E-value=1.7e+02 Score=18.94 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=22.7
Q ss_pred eeeEEEEeC-CHHHHHHHHHHhhCCeeeccCC
Q 032565 18 VHHVGILCE-NLERSLEFYQNILGLEINEARP 48 (138)
Q Consensus 18 l~hi~l~v~-d~~~a~~fy~~~lg~~~~~~~~ 48 (138)
-..|.|.|+ .-.+|...|++.|||++....+
T Consensus 106 A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~ 137 (193)
T KOG3235|consen 106 AKYVSLHVRKSNRAALHLYKNTLGFVVCEVEP 137 (193)
T ss_pred ceEEEEeeecccHHHHHhhhhccceEEeeccc
Confidence 345666664 3367888999999999987654
No 320
>PF07901 DUF1672: Protein of unknown function (DUF1672); InterPro: IPR012873 This family is composed of hypothetical bacterial proteins of unknown function.
Probab=20.81 E-value=2.5e+02 Score=19.81 Aligned_cols=35 Identities=3% Similarity=0.112 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhCCeeeccCCCCCCCeeEEEEEeCC
Q 032565 29 ERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA 63 (138)
Q Consensus 29 ~~a~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 63 (138)
+++++|+.+.+++.+....-.+....-.+++.+.+
T Consensus 40 k~~~~yfkd~y~t~VKv~NVVga~dga~V~Veced 74 (277)
T PF07901_consen 40 KRAIQYFKDNYKTDVKVTNVVGARDGAVVYVECED 74 (277)
T ss_pred HHHHHHHHHhcCceeEEEEEEccCCcEEEEEEecC
Confidence 46788999999999887655445444667788865
No 321
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=20.78 E-value=1.3e+02 Score=18.43 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=13.5
Q ss_pred EEEEECCCCCeEEEEe
Q 032565 120 AIFTRDPDANALEFTQ 135 (138)
Q Consensus 120 ~~~~~DPdG~~~e~~~ 135 (138)
..|+.|++|.++....
T Consensus 122 ~tflID~~G~v~~~~~ 137 (153)
T TIGR02540 122 WKYLVNPEGQVVKFWR 137 (153)
T ss_pred EEEEEcCCCcEEEEEC
Confidence 4899999999988764
No 322
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=20.61 E-value=1.2e+02 Score=17.55 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=16.7
Q ss_pred eeeEEEEeCCHHHHHHHHHH
Q 032565 18 VHHVGILCENLERSLEFYQN 37 (138)
Q Consensus 18 l~hi~l~v~d~~~a~~fy~~ 37 (138)
-..+.|.-++++.+++||..
T Consensus 53 tr~vviEFps~~~ar~~y~S 72 (96)
T COG5470 53 TRNVVIEFPSLEAARDCYNS 72 (96)
T ss_pred ccEEEEEcCCHHHHHHHhcC
Confidence 35677888999999999975
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=20.54 E-value=77 Score=12.99 Aligned_cols=14 Identities=14% Similarity=0.733 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHhh
Q 032565 26 ENLERSLEFYQNIL 39 (138)
Q Consensus 26 ~d~~~a~~fy~~~l 39 (138)
.+.++|++.|++++
T Consensus 14 g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 14 GDYDEAIEYFQRLI 27 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 57788888888765
No 324
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.47 E-value=70 Score=21.34 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=32.1
Q ss_pred ceEEEEECCHHHHHHHHHHC-CCeEEec---CCCccEEEEECCCCCeEE
Q 032565 88 RHTCIAIRDVSKLKMILDKA-GISYTLS---KSGRPAIFTRDPDANALE 132 (138)
Q Consensus 88 ~hi~~~v~d~~~~~~~l~~~-g~~~~~~---~~~~~~~~~~DPdG~~~e 132 (138)
..+.+.|+.+.++..+|+.+ |+-...+ .-....|..+||.|..=+
T Consensus 171 GTmTLtv~tir~aa~~le~~~GVLYA~p~lr~~ErilFrerdp~gflra 219 (254)
T COG4017 171 GTMTLTVDTIRDAARELESLDGVLYAIPNLRYYERILFRERDPHGFLRA 219 (254)
T ss_pred ceEEEEhHHHHHHHHHHhhhcceEEEccchhhhhhhhhhccChHHHHHh
Confidence 45788888888999999987 7776654 223445777888876433
No 325
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.22 E-value=2e+02 Score=16.80 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHCCCeEEe---c---------CCCccEEEEECCCCCeEEEEe
Q 032565 96 DVSKLKMILDKAGISYTL---S---------KSGRPAIFTRDPDANALEFTQ 135 (138)
Q Consensus 96 d~~~~~~~l~~~g~~~~~---~---------~~~~~~~~~~DPdG~~~e~~~ 135 (138)
+.+++.+.+++.++.+.. + ..+....++.|++|.++....
T Consensus 72 ~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 72 DLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred CHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 466777777777775421 1 123467899999998876543
No 326
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.13 E-value=71 Score=18.02 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHCCCe
Q 032565 96 DVSKLKMILDKAGIS 110 (138)
Q Consensus 96 d~~~~~~~l~~~g~~ 110 (138)
++.++.+.|+++|..
T Consensus 80 ~IkEAr~~L~rkg~r 94 (95)
T KOG4841|consen 80 QIKEARADLARKGLR 94 (95)
T ss_pred HHHHHHHHHHHccCC
Confidence 577778888888864
No 327
>PRK03624 putative acetyltransferase; Provisional
Probab=20.12 E-value=1.3e+02 Score=17.43 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=18.8
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhhCCeeec
Q 032565 17 SVHHVGILC-ENLERSLEFYQNILGLEINE 45 (138)
Q Consensus 17 ~l~hi~l~v-~d~~~a~~fy~~~lg~~~~~ 45 (138)
+...+.+.+ ++-..+.+||++ +||....
T Consensus 101 ~~~~~~~~~~~~N~~~~~~y~k-~GF~~~~ 129 (140)
T PRK03624 101 GCPKINLQVREDNDAVLGFYEA-LGYEEQD 129 (140)
T ss_pred CCCEEEEEEecCcHHHHHHHHH-cCCcccc
Confidence 445555555 344778999976 9998654
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=20.11 E-value=76 Score=11.95 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=13.0
Q ss_pred eCCHHHHHHHHHHhhCC
Q 032565 25 CENLERSLEFYQNILGL 41 (138)
Q Consensus 25 v~d~~~a~~fy~~~lg~ 41 (138)
..+.+++..+|...+..
T Consensus 14 ~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 14 LGDYDEALEYYEKALEL 30 (34)
T ss_pred HhhHHHHHHHHHHHHcc
Confidence 46788889888887654
Done!