BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032567
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BRL|B Chain B, Three-Dimensional Structure Of Bacterial Luciferase From
Vibrio Harveyi At 2.4 Angstroms Resolution
pdb|1LUC|B Chain B, Bacterial Luciferase
pdb|1XKJ|A Chain A, Bacterial Luciferase Beta2 Homodimer
pdb|1XKJ|B Chain B, Bacterial Luciferase Beta2 Homodimer
pdb|1BSL|A Chain A, Structure Of Alkanal Monooxygenase Beta Chain
pdb|1BSL|B Chain B, Structure Of Alkanal Monooxygenase Beta Chain
pdb|1BRL|D Chain D, Three-Dimensional Structure Of Bacterial Luciferase From
Vibrio Harveyi At 2.4 Angstroms Resolution
Length = 324
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 77 SDLYTLTVASADPKSISAGQPVEF----TKSVTQWFAKDGV-LVEGLFWKDVLALLDEYA 131
+D Y+ S +P + + G P +F +K V +W AK G+ LV W D A EYA
Sbjct: 148 NDFYSFPKISVNPHAFTEGGPAQFVNATSKEVVEWAAKLGLPLV--FRWDDSNAQRKEYA 205
>pdb|3FGC|B Chain B, Crystal Structure Of The Bacterial Luciferase:flavin
Complex Reveals The Basis Of Intersubunit Communication
pdb|3FGC|D Chain D, Crystal Structure Of The Bacterial Luciferase:flavin
Complex Reveals The Basis Of Intersubunit Communication
Length = 332
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 77 SDLYTLTVASADPKSISAGQPVEF----TKSVTQWFAKDGV-LVEGLFWKDVLALLDEYA 131
+D Y+ S +P + + G P +F +K V +W AK G+ LV W D A EYA
Sbjct: 148 NDFYSFPKISVNPHAFTEGGPAQFVNATSKEVVEWAAKLGLPLV--FRWDDSNAQRKEYA 205
>pdb|1PWX|A Chain A, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWX|B Chain B, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWX|C Chain C, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWX|D Chain D, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWZ|A Chain A, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With (R)-Styrene Oxide And Chloride
pdb|1PWZ|B Chain B, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With (R)-Styrene Oxide And Chloride
pdb|1PX0|A Chain A, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1PX0|B Chain B, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1PX0|C Chain C, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1PX0|D Chain D, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1ZMT|A Chain A, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZMT|B Chain B, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZMT|C Chain C, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZMT|D Chain D, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZO8|A Chain A, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|B Chain B, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|C Chain C, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|D Chain D, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|E Chain E, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|F Chain F, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|G Chain G, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|H Chain H, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|I Chain I, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|J Chain J, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|K Chain K, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|L Chain L, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|M Chain M, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|N Chain N, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|O Chain O, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|P Chain P, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
Length = 254
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 90 KSISAGQPVEFTKSVTQWFAKDGVLVEGLFWKDVLALLDEYAIE 133
K +S +P E ++VT + + VLV + +D+YA+E
Sbjct: 52 KPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVE 95
>pdb|3FZU|L Chain L, Igg1 Fab Characterized By HD EXCHANGE
pdb|3FZU|D Chain D, Igg1 Fab Characterized By HD EXCHANGE
Length = 214
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 55 KFFGQGSFTSTGLVVSSKLPR-FSDLYTLTVASADPKSISAGQPVEFTKSV 104
+F G GS T L VSS P F+ Y L V S P++ G VE ++V
Sbjct: 61 RFSGSGSGTEFTLTVSSLQPEDFATYYCLQVYST-PRTFGQGTKVEIKRTV 110
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 16 LAMEVKIFRIIHMDNALIFERHLAYVIFYCIISIHHLRGKFFGQ 59
L + +K+FR + N+ +F + IF I+ IH L K G
Sbjct: 22 LNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGH 65
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 16 LAMEVKIFRIIHMDNALIFERHLAYVIFYCIISIHHLRGKFFGQ 59
L + +K+FR + N+ +F + IF I+ IH L K G
Sbjct: 22 LNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGH 65
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 16 LAMEVKIFRIIHMDNALIFERHLAYVIFYCIISIHHLRGKFFGQ 59
L + +K+FR + N+ +F + IF I+ IH L K G
Sbjct: 219 LNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGH 262
>pdb|4I77|L Chain L, Lebrikizumab Fab Bound To Il-13
Length = 218
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 55 KFFGQGSFTSTGLVVSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSV 104
+F G GS T L +SS +Y + DP++ G VE ++V
Sbjct: 65 RFSGSGSGTDFTLTISSLQAEDVAVYYCQQNNEDPRTFGGGTKVEIKRTV 114
>pdb|1DBH|A Chain A, Dbl And Pleckstrin Homology Domains From Hsos1
Length = 354
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 16 LAMEVKIFRIIHMDNALIFERHLAYVIFYCIISIHHLRGKFFG 58
L + +K+FR + N+ +F + IF I+ IH L K G
Sbjct: 22 LNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLG 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,176,108
Number of Sequences: 62578
Number of extensions: 150617
Number of successful extensions: 571
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 35
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)