BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032567
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P58684|SPCS2_ARATH Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana
GN=At2g39960 PE=2 SV=1
Length = 192
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/81 (81%), Positives = 71/81 (87%), Gaps = 1/81 (1%)
Query: 59 QGSFTSTGLVVSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVEGL 118
+GSFTSTGLVVSSKLPRFSD YTLT+ SADPKSISAG+ V+ TKSVTQWF KDGVLVEGL
Sbjct: 112 EGSFTSTGLVVSSKLPRFSDQYTLTIDSADPKSISAGKSVQLTKSVTQWFTKDGVLVEGL 171
Query: 119 FWKDVLALLDEYA-IEPKKKK 138
FWKDV AL+ YA EPKKKK
Sbjct: 172 FWKDVEALIKNYAEEEPKKKK 192
>sp|Q5M8Y1|SPCS2_XENTR Probable signal peptidase complex subunit 2 OS=Xenopus tropicalis
GN=spcs2 PE=2 SV=1
Length = 201
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 69 VSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVEGLFWKDVLALLD 128
+SS L RF D YTL V K+ A + EFTKS+ ++F +G LV LF +V L D
Sbjct: 134 LSSSLKRFDDKYTLKVTYISGKT-KAQRDAEFTKSIARFFDDNGTLVMDLFEPEVSKLHD 192
Query: 129 EYAIEPKKK 137
A+E K K
Sbjct: 193 SLAMEKKTK 201
>sp|Q5BJI9|SPCS2_DANRE Probable signal peptidase complex subunit 2 OS=Danio rerio GN=spcs2
PE=2 SV=1
Length = 201
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 69 VSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVEGLFWKDVLALLD 128
+SS L RF D YTL ++ D K+ + EFTKSV+ +F ++G LV + K V L D
Sbjct: 134 LSSSLKRFDDQYTLRMSFTDGKT-KQSRETEFTKSVSVFFDENGTLVMDQYEKYVSKLHD 192
Query: 129 EYAIEPKKK 137
A E K K
Sbjct: 193 TLATEKKTK 201
>sp|Q5RAY6|SPCS2_PONAB Signal peptidase complex subunit 2 OS=Pongo abelii GN=SPCS2 PE=2
SV=1
Length = 226
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 69 VSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVEGLFWKDVLALLD 128
+SS L RF D YTL + ++ + EFTKS+ ++F G LV + ++ L D
Sbjct: 159 LSSSLKRFDDKYTLKLTFISGRT-KQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHD 217
Query: 129 EYAIEPKKK 137
AIE K K
Sbjct: 218 SLAIERKIK 226
>sp|Q15005|SPCS2_HUMAN Signal peptidase complex subunit 2 OS=Homo sapiens GN=SPCS2 PE=1
SV=3
Length = 226
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 69 VSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVEGLFWKDVLALLD 128
+SS L RF D YTL + ++ + EFTKS+ ++F G LV + ++ L D
Sbjct: 159 LSSSLKRFDDKYTLKLTFISGRT-KQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHD 217
Query: 129 EYAIEPKKK 137
AIE K K
Sbjct: 218 SLAIERKIK 226
>sp|Q4R512|SPCS2_MACFA Signal peptidase complex subunit 2 OS=Macaca fascicularis GN=SPCS2
PE=2 SV=1
Length = 226
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 69 VSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVEGLFWKDVLALLD 128
+SS L RF D YTL + ++ + EFTKS+ ++F G LV + ++ L D
Sbjct: 159 LSSSLKRFDDKYTLKLTFISGRT-KQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHD 217
Query: 129 EYAIEPKKK 137
A+E K K
Sbjct: 218 SLAVERKIK 226
>sp|Q28250|SPCS2_CANFA Signal peptidase complex subunit 2 OS=Canis familiaris GN=SPCS2
PE=1 SV=1
Length = 226
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 69 VSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVEGLFWKDVLALLD 128
+SS L RF D YTL + ++ + EFTKS+ ++F G LV + ++ L D
Sbjct: 159 LSSSLKRFDDKYTLKLTFISGRT-KQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHD 217
Query: 129 EYAIEPKKK 137
A E K K
Sbjct: 218 SLATERKIK 226
>sp|Q9CYN2|SPCS2_MOUSE Signal peptidase complex subunit 2 OS=Mus musculus GN=Spcs2 PE=2
SV=1
Length = 226
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 69 VSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVEGLFWKDVLALLD 128
+SS L RF D YTL + ++ + EFTKS+ ++F G LV + ++ L D
Sbjct: 159 LSSSLKRFDDKYTLKLTFISGRT-KQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHD 217
Query: 129 EYAIEPKKK 137
A E K K
Sbjct: 218 SLATERKIK 226
>sp|A6VHH7|CARA_METM7 Carbamoyl-phosphate synthase small chain OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=carA PE=3
SV=1
Length = 366
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 52 LRGKFFGQGSFTSTGLVVSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVT-QWFAK 110
+RG FG + LV ++ + + ++ LT S + I+ P+E V +WF
Sbjct: 13 IRGDGFGAEAEVLGELVFNTSMTGYVEI--LTDPSYKGQIITMTYPLEGNYGVEKEWFES 70
Query: 111 DGVLVEGLFWKDVLAL-LDEYAIE 133
DG+ EG KD+ L LDE+ E
Sbjct: 71 DGIKAEGFVVKDMTGLELDEFLKE 94
>sp|A9A972|CARA_METM6 Carbamoyl-phosphate synthase small chain OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=carA PE=3
SV=1
Length = 366
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 52 LRGKFFGQGSFTSTGLVVSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVT-QWFAK 110
+RG FG + LV ++ + + ++ LT S + ++ P+E V +WF
Sbjct: 13 IRGDGFGAETEVLGELVFNTSMTGYVEI--LTDPSYKGQIVTMTYPLEGNYGVEKEWFES 70
Query: 111 DGVLVEGLFWKDVLAL-LDEYAIE 133
DG+ EG KD+ L LDE+ E
Sbjct: 71 DGIKAEGFVVKDMTGLKLDEFLKE 94
>sp|Q6LWW5|CARA_METMP Carbamoyl-phosphate synthase small chain OS=Methanococcus
maripaludis (strain S2 / LL) GN=carA PE=3 SV=1
Length = 366
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 52 LRGKFFGQGSFTSTGLVVSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVT-QWFAK 110
+RG+ FG + LV ++ + + ++ LT S + I+ P+E V +WF
Sbjct: 13 IRGEGFGAETEVLGELVFNTSMTGYVEI--LTDPSYKGQIITMTYPLEGNYGVEKEWFES 70
Query: 111 DGVLVEGLFWKDVLAL-LDEYAIE 133
DG+ EG KD+ LDE+ E
Sbjct: 71 DGIKAEGFVVKDITGKELDEFLKE 94
>sp|P07739|LUXB_VIBHA Alkanal monooxygenase beta chain OS=Vibrio harveyi GN=luxB PE=1
SV=2
Length = 324
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 77 SDLYTLTVASADPKSISAGQPVEF----TKSVTQWFAKDGV-LVEGLFWKDVLALLDEYA 131
+D Y+ S +P + + G P +F +K V +W AK G+ LV W D A EYA
Sbjct: 148 NDFYSFPKISVNPHAFTEGGPAQFVNATSKEVVEWAAKLGLPLV--FRWDDSNAQRKEYA 205
>sp|A9BHR6|DAPH_PETMO 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=dapH
PE=3 SV=1
Length = 233
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 14/67 (20%)
Query: 52 LRGKFFGQGSFTSTGLVVSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKD 111
L G GQGS G VV ++ +P S+ AG P +F K V
Sbjct: 177 LEGVKVGQGSIIGAGSVV--------------ISDVEPYSVVAGVPAKFIKKVDDKTKAK 222
Query: 112 GVLVEGL 118
LVEGL
Sbjct: 223 TQLVEGL 229
>sp|A6UQN4|CARA_METVS Carbamoyl-phosphate synthase small chain OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=carA PE=3 SV=1
Length = 369
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 52 LRGKFFGQGSFTSTGLVVSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVTQ-WFAK 110
+RGK FG + LV ++ + + ++ LT S + + ++ P+E V + WF
Sbjct: 13 IRGKGFGAEAEVLGELVFNTSMTGYVEI--LTDPSYNGQIVTMTYPLEGNYGVDKRWFES 70
Query: 111 DGVLVEGLFWKDVLAL-----LDEYAI 132
+G+ EG KD+ + L EY +
Sbjct: 71 EGIKAEGFIVKDMTGIELDSFLKEYGV 97
>sp|Q2RH55|GLGA_MOOTA Glycogen synthase OS=Moorella thermoacetica (strain ATCC 39073)
GN=glgA PE=3 SV=1
Length = 487
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 2 CSDWFCGPFPLSL--------FLAMEVKIFRIIHMDNALIFERHLAYVIFYCIISIHHLR 53
C+DW GP PL L F I+ I ++ F R++ + R
Sbjct: 133 CNDWQTGPIPLFLKVKHEDNPFYRETATIYTIHNLQYQGTFPRNILKTMALSEEFFVPER 192
Query: 54 GKFFGQGSFTSTGLVVSSKLPRFSDLYTLTVASAD 88
+F+GQ S+ G++ + + S Y L + + +
Sbjct: 193 LEFYGQVSYMKAGILYADLVNTVSKKYALEIQTPE 227
>sp|B1I4F5|GLGA_DESAP Glycogen synthase OS=Desulforudis audaxviator (strain MP104C)
GN=glgA PE=3 SV=1
Length = 500
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 2 CSDWFCGPFPLSL--------FLAMEVKIFRIIHMDNALIFERHLAYVIFYCIISIHHLR 53
C+DW CGP PL L F + +F I ++ F + + +++
Sbjct: 145 CNDWQCGPIPLFLKTHYRGDPFFSRMATVFTIHNLQYQGNFPKEVLHMLGLGKEYFRPEA 204
Query: 54 GKFFGQGSFTSTGLVVSSKLPRFSDLYTLTVASAD 88
+F+G SF G+ + L S Y + + +
Sbjct: 205 LEFYGSVSFMKAGIQYADVLTTVSRTYAREIQTPE 239
>sp|Q1RMS0|CCSE1_BOVIN Serine-rich coiled-coil domain-containing protein 1 OS=Bos taurus
GN=CCSER1 PE=2 SV=1
Length = 743
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 76 FSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVEG 117
FS Y L+ +SIS Q EF+ +TQ+ ++ VLV G
Sbjct: 185 FSSHYKLSKPVPQSQSISLVQQSEFSLEITQYQEREPVLVRG 226
>sp|A4G0Y3|CARA_METM5 Carbamoyl-phosphate synthase small chain OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=carA PE=3
SV=1
Length = 366
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 52 LRGKFFGQGSFTSTGLVVSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVT-QWFAK 110
+RG FG + LV ++ + + ++ LT S + ++ P+E V +WF
Sbjct: 13 IRGDGFGAETEVLGELVFNTSMTGYVEI--LTDPSYKGQIVTMTYPLEGNYGVEKEWFES 70
Query: 111 DGVLVEGLFWKDVL-ALLDEYAIE 133
DG+ EG KD+ + LDE+ E
Sbjct: 71 DGIKAEGFVVKDMTGSKLDEFLKE 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.141 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,522,594
Number of Sequences: 539616
Number of extensions: 1825210
Number of successful extensions: 4357
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4340
Number of HSP's gapped (non-prelim): 22
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)