Query 032567
Match_columns 138
No_of_seqs 98 out of 100
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 03:07:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4072 Signal peptidase compl 100.0 4.1E-37 8.9E-42 233.0 -1.8 123 6-138 5-127 (127)
2 PF06703 SPC25: Microsomal sig 99.9 1.3E-24 2.9E-29 165.9 4.0 114 7-130 49-162 (162)
3 PF11322 DUF3124: Protein of u 69.4 3.8 8.2E-05 31.7 2.2 23 97-121 39-61 (125)
4 PF13127 DUF3955: Protein of u 58.4 5.6 0.00012 27.0 1.2 15 103-117 23-37 (63)
5 PF13750 Big_3_3: Bacterial Ig 48.5 18 0.00038 28.1 2.6 20 75-94 120-139 (158)
6 PF15000 TUSC2: Tumour suppres 39.2 11 0.00024 28.8 0.2 24 98-121 45-68 (111)
7 cd04752 Commd4 COMM_Domain con 31.6 40 0.00087 26.3 2.3 45 63-108 108-158 (174)
8 PF14770 TMEM18: Transmembrane 30.0 21 0.00045 27.2 0.4 15 106-120 73-87 (123)
9 PF08363 GbpC: Glucan-binding 29.7 50 0.0011 28.3 2.7 39 76-116 135-173 (283)
10 PF11396 DUF2874: Protein of u 29.1 37 0.00081 21.2 1.5 11 105-115 51-61 (61)
11 PRK09885 putative toxin YafO; 27.4 21 0.00044 27.9 0.0 24 26-49 80-103 (132)
12 PF11355 DUF3157: Protein of u 25.4 2.1E+02 0.0046 23.8 5.5 74 57-133 90-166 (199)
13 PF13590 DUF4136: Domain of un 24.6 1E+02 0.0022 22.0 3.3 49 77-130 100-148 (151)
14 PF06413 Neugrin: Neugrin; In 23.1 35 0.00076 28.3 0.6 12 105-116 212-223 (225)
15 KOG4761 Proteasome formation i 22.4 1.1E+02 0.0023 26.6 3.4 47 65-113 49-124 (266)
16 PF12142 PPO1_DWL: Polyphenol 21.9 49 0.0011 22.1 1.0 16 106-121 13-28 (54)
17 cd03872 M14_CPA6 Carboxypeptid 21.5 43 0.00093 28.6 0.8 12 2-13 152-163 (300)
18 PF14903 WG_beta_rep: WG conta 21.1 14 0.0003 20.6 -1.6 26 107-132 3-28 (35)
19 PF07233 DUF1425: Protein of u 20.3 55 0.0012 23.1 1.1 13 106-118 47-59 (94)
20 PF05526 R_equi_Vir: Rhodococc 20.1 1.4E+02 0.0031 24.4 3.6 19 112-130 113-131 (177)
No 1
>KOG4072 consensus Signal peptidase complex, subunit SPC25 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-37 Score=232.96 Aligned_cols=123 Identities=27% Similarity=0.246 Sum_probs=117.2
Q ss_pred ccccccchheeeeeeeEEEEEecchHHHHhhhhheeeeeeeeeeeeeeeccCCCCCCCCCcEEEeecCCCCCCceEEEEE
Q 032567 6 FCGPFPLSLFLAMEVKIFRIIHMDNALIFERHLAYVIFYCIISIHHLRGKFFGQGSFTSTGLVVSSKLPRFSDLYTLTVA 85 (138)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~d~~G~~~~~~w~iSSslkKyDDkYtLtIt 85 (138)
|+-|||+|+.+|..|.+.||++||.+++.| |||++.|++.| ..+|+ |++++..|++||+||+|||+|+|+++
T Consensus 5 ~~~pfP~sk~vla~~v~syf~~mGil~~~~---s~vek~i~~~a----~q~d~-~~~~~r~W~~ss~~ka~dDky~l~l~ 76 (127)
T KOG4072|consen 5 SRHPFPESKPVLAPCVWSYFQMMGILTIYT---SYVEKSIFLVA----HQKDP-GMDPDRIWQLSSSLKAFDDKYTLKLT 76 (127)
T ss_pred ccCcCCCCcceeeeHHHHHHHHHhHHHHHH---HHhcccceehh----hhhcc-CCCCCcccccchhhhhccCcceeEEE
Confidence 688999999999999999999999999998 99999999999 33566 88899999999999999999999999
Q ss_pred EeCCCCCCCCcceEEeecccceeccCceEeecchHHHHHHHHHHhhcCCccCC
Q 032567 86 SADPKSISAGQPVEFTKSVTQWFAKDGVLVEGLFWKDVLALLDEYAIEPKKKK 138 (138)
Q Consensus 86 ~~d~ks~~~r~e~s~tKSVa~fFDenG~Lv~~lf~~eV~kL~~sl~~e~KK~K 138 (138)
+++|+++++| |+++|||||+|||.+|+++++++++||++|||+|+++ +|.|
T Consensus 77 f~~gr~gq~r-eak~tKsiakffDh~Gtl~~plv~~ev~~l~daLa~~-~ki~ 127 (127)
T KOG4072|consen 77 FISGRTGQQR-EAKFTKSIAKFFDHSGTLVMPLVEPEVSRLHDALASE-RKIK 127 (127)
T ss_pred EEecccchhh-hhHHHHHHHHHccCCCeEeccCCccccchHHHHHHHH-hccC
Confidence 9999999999 9999999999999999999999999999999999999 8865
No 2
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=99.90 E-value=1.3e-24 Score=165.93 Aligned_cols=114 Identities=30% Similarity=0.376 Sum_probs=105.2
Q ss_pred cccccchheeeeeeeEEEEEecchHHHHhhhhheeeeeeeeeeeeeeeccCCCCCCCCCcEEEeecCCCCCCceEEEEEE
Q 032567 7 CGPFPLSLFLAMEVKIFRIIHMDNALIFERHLAYVIFYCIISIHHLRGKFFGQGSFTSTGLVVSSKLPRFSDLYTLTVAS 86 (138)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~d~~G~~~~~~w~iSSslkKyDDkYtLtIt~ 86 (138)
.-|||.|+.++..|-+.|||.|+.+.++. +|+++.+++.. ++..+..++++|++||+|+||||+|+|+|++
T Consensus 49 ~~~f~~s~~~~~~~v~~YfiLs~il~~~~---~~~ek~~~~~g------~~~~~~~~~~~i~i~s~~~k~~p~Y~l~i~~ 119 (162)
T PF06703_consen 49 KYPFPESKPYLIICVILYFILSGILTLYS---YFVEKDIFYVG------KRKDGSSSGEKITISSSMPKYDPIYTLTITY 119 (162)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHH---HHhcCCEEEEE------eccCCCCCCCEEEEEEEccCCCCeEEEEEEE
Confidence 35999999999999999999999999997 88998888877 7776677899999999999999999999999
Q ss_pred eCCCCCCCCcceEEeecccceeccCceEeecchHHHHHHHHHHh
Q 032567 87 ADPKSISAGQPVEFTKSVTQWFAKDGVLVEGLFWKDVLALLDEY 130 (138)
Q Consensus 87 ~d~ks~~~r~e~s~tKSVa~fFDenG~Lv~~lf~~eV~kL~~sl 130 (138)
.+++++..+ +.++++||++|||+||+|++++|+++|.+|++++
T Consensus 120 ~~~~~~~~~-~~~~~~~v~~~Fde~G~l~~~~~~~~l~~ll~~~ 162 (162)
T PF06703_consen 120 RDGKSKSSK-EVSVSKSVGKFFDEDGYLVEDLFENWLEKLLEKF 162 (162)
T ss_pred EcCCCCccc-eEEEEEehhhEECCCCEEeHHHHHHHHHHHHhcC
Confidence 998877766 8999999999999999999999999999999874
No 3
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=69.41 E-value=3.8 Score=31.66 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=17.2
Q ss_pred ceEEeecccceeccCceEeecchHH
Q 032567 97 PVEFTKSVTQWFAKDGVLVEGLFWK 121 (138)
Q Consensus 97 e~s~tKSVa~fFDenG~Lv~~lf~~ 121 (138)
+..+++ ++|||++|.|+..-+++
T Consensus 39 ~i~i~~--v~Yydt~G~lvr~yl~~ 61 (125)
T PF11322_consen 39 PIYITS--VDYYDTDGKLVRSYLDK 61 (125)
T ss_pred CEEEEE--EEEECCCCeEhHHhcCC
Confidence 455554 79999999999876554
No 4
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=58.38 E-value=5.6 Score=26.98 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=13.3
Q ss_pred cccceeccCceEeec
Q 032567 103 SVTQWFAKDGVLVEG 117 (138)
Q Consensus 103 SVa~fFDenG~Lv~~ 117 (138)
.+.++.|+||+++++
T Consensus 23 ~~~syVd~~G~L~Ep 37 (63)
T PF13127_consen 23 IIGSYVDEDGVLHEP 37 (63)
T ss_pred cccceECCCCeEecc
Confidence 457899999999998
No 5
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=48.51 E-value=18 Score=28.09 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=16.2
Q ss_pred CCCCceEEEEEEeCCCCCCC
Q 032567 75 RFSDLYTLTVASADPKSISA 94 (138)
Q Consensus 75 KyDDkYtLtIt~~d~ks~~~ 94 (138)
..++.|+|+++..|..+++.
T Consensus 120 e~~~~YtLtV~a~D~aGN~~ 139 (158)
T PF13750_consen 120 EADDSYTLTVSATDKAGNQS 139 (158)
T ss_pred CCCCeEEEEEEEEecCCCEE
Confidence 46899999999999766543
No 6
>PF15000 TUSC2: Tumour suppressor candidate 2
Probab=39.17 E-value=11 Score=28.76 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.0
Q ss_pred eEEeecccceeccCceEeecchHH
Q 032567 98 VEFTKSVTQWFAKDGVLVEGLFWK 121 (138)
Q Consensus 98 ~s~tKSVa~fFDenG~Lv~~lf~~ 121 (138)
--+++.=+.||||||-|..+-++.
T Consensus 45 fV~tr~sS~y~DeDGdlAhEFYeE 68 (111)
T PF15000_consen 45 FVFTRRSSMYFDEDGDLAHEFYEE 68 (111)
T ss_pred cEEecCCceeEcCCcchhhhhhhh
Confidence 457788889999999999998887
No 7
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=31.64 E-value=40 Score=26.33 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=31.7
Q ss_pred CCCcE----EEee-cCCC-CCCceEEEEEEeCCCCCCCCcceEEeeccccee
Q 032567 63 TSTGL----VVSS-KLPR-FSDLYTLTVASADPKSISAGQPVEFTKSVTQWF 108 (138)
Q Consensus 63 ~~~~w----~iSS-slkK-yDDkYtLtIt~~d~ks~~~r~e~s~tKSVa~fF 108 (138)
.+-.| ++|| .+.+ -.|.|+|++.++++.+++.. +..|+=+..+|-
T Consensus 108 ~d~~WRld~~lsSs~l~~~~~P~~~l~L~v~~~~~~~~~-~v~~e~s~~ql~ 158 (174)
T cd04752 108 ESVDWRVDYILSSSELQEVNEPLVQLRLKVRNADTGEIT-PHPFSVSADKFR 158 (174)
T ss_pred cccceeeEEEEcchhhhhcCCCeEEEEEeeecCCCCCcc-eEEEEecHHHHH
Confidence 46677 4455 4444 89999999999987765555 677777766643
No 8
>PF14770 TMEM18: Transmembrane protein 18
Probab=30.00 E-value=21 Score=27.17 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=12.3
Q ss_pred ceeccCceEeecchH
Q 032567 106 QWFAKDGVLVEGLFW 120 (138)
Q Consensus 106 ~fFDenG~Lv~~lf~ 120 (138)
+|||++|.++.-.|.
T Consensus 73 nYFDs~G~Fisvv~s 87 (123)
T PF14770_consen 73 NYFDSSGVFISVVFS 87 (123)
T ss_pred cCcCCCCeeehHHHH
Confidence 899999999876553
No 9
>PF08363 GbpC: Glucan-binding protein C; InterPro: IPR013574 This domain is found in glucan-binding protein C (GbpC) and in the V-region of surface protein antigen; both these proteins belong to the Spa family of Streptococcal proteins []. This domain consists of a beta-supersandwich of 18 beta-strands in two sheets. There are at least four types of glucan-binding proteins (Gbp) in Streptococcus mutans, GbpA, GbpB, GbpC and GbpD. These proteins promote the adhesion of Streptococcal bacteria to teeth and are associated with dental caries []. GbpC is a cell-wall anchoring protein that plays an important role in sucrose-dependent adhesion by binding to soluble glucan synthesised by glucosyltransferase D (GTFD) []. Spa antigens I/II are multi-functional proteins expressed at the cell wall surface of oral Streptococci, where they function as adhesins. Antigens I/II recognise a wide range of ligands. They exert an immunomodulatory effect on human cells and are important in inflammatory disorders, such as dental caries. These proteins can be divided into seven regions: signal peptide, N-terminal, A-region (alanine-rich), V-region (variable domain), P-region (proline-rich), C-terminal domain, and a cell wall anchor motif. The V-region is the central domain and exhibits the greatest variability in sequence, and is responsible for binding monocyte receptors, its binding stimulating the release of TNF-alpha from the monocytes. The crystal structure of the V-region revealed a lectin-like fold that displays a putative preformed carbohydrate-binding site stabilised by a metal ion [].; GO: 0005488 binding, 0009405 pathogenesis, 0044406 adhesion to host, 0009274 peptidoglycan-based cell wall; PDB: 1JMM_A 3IPK_A 3IOX_A 2WD6_B.
Probab=29.66 E-value=50 Score=28.29 Aligned_cols=39 Identities=8% Similarity=0.177 Sum_probs=22.0
Q ss_pred CCCceEEEEEEeCCCCCCCCcceEEeecccceeccCceEee
Q 032567 76 FSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVE 116 (138)
Q Consensus 76 yDDkYtLtIt~~d~ks~~~r~e~s~tKSVa~fFDenG~Lv~ 116 (138)
.||+-++.+-...+..++.. ..++.-- .+|||+||.++.
T Consensus 135 ~DPT~ti~~~~~~~~~~~~~-~~~v~v~-~~FYDedG~~i~ 173 (283)
T PF08363_consen 135 NDPTKTIFYGASTGDGGKDD-SIKVNVD-VKFYDEDGKEID 173 (283)
T ss_dssp SSGGG-EEEE-TTSSEBTT--EEEEEEE-EEEEETTS-BE-
T ss_pred CCCceEEEEEeecCCCCcee-eeEEEeE-EEEECCCCCEEc
Confidence 57877777776555443222 4445443 569999999874
No 10
>PF11396 DUF2874: Protein of unknown function (DUF2874); InterPro: IPR021533 This bacterial family of proteins are probable periplasmic proteins with unknown function. There are between one and four copies of this domain per sequence. ; PDB: 3DUE_A 3U1W_B 3DB7_A 4DSD_A 3ELG_A.
Probab=29.13 E-value=37 Score=21.23 Aligned_cols=11 Identities=18% Similarity=0.501 Sum_probs=7.7
Q ss_pred cceeccCceEe
Q 032567 105 TQWFAKDGVLV 115 (138)
Q Consensus 105 a~fFDenG~Lv 115 (138)
.-+||.+|.++
T Consensus 51 ~v~fd~~G~~l 61 (61)
T PF11396_consen 51 EVYFDANGNWL 61 (61)
T ss_dssp EEEEETTS-EE
T ss_pred EEEEcCCCCCC
Confidence 34799999875
No 11
>PRK09885 putative toxin YafO; Provisional
Probab=27.39 E-value=21 Score=27.91 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.4
Q ss_pred EecchHHHHhhhhheeeeeeeeee
Q 032567 26 IHMDNALIFERHLAYVIFYCIISI 49 (138)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~ 49 (138)
.+.||+|++-+|+.+=..||++++
T Consensus 80 RtSd~~LVYc~~~~~~~~Y~lIaI 103 (132)
T PRK09885 80 RTSGYHLVYCQGAFDEQAYLLIAI 103 (132)
T ss_pred eecCcEEEEecCccCCCeeEEEEE
Confidence 467888999888888888888887
No 12
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.40 E-value=2.1e+02 Score=23.79 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=54.1
Q ss_pred CCCCCCCCCcEEEeecCCCCCCceEEEEEEeCCCCCCCCcceEEeecccceeccCceEeec---chHHHHHHHHHHhhcC
Q 032567 57 FGQGSFTSTGLVVSSKLPRFSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVEG---LFWKDVLALLDEYAIE 133 (138)
Q Consensus 57 d~~G~~~~~~w~iSSslkKyDDkYtLtIt~~d~ks~~~r~e~s~tKSVa~fFDenG~Lv~~---lf~~eV~kL~~sl~~e 133 (138)
.|-+.-.+.++.++=.=.+|+|- .|-|++.=.+.. .+ .+-.-.---.+||.+|.++.. .+|..+.+|=++|++.
T Consensus 90 k~l~qls~sGVdV~l~~~~y~~~-~L~l~~~ltnqS-sq-sVv~Vel~v~l~d~~G~~L~~e~v~vWqsIkRMpdTYLR~ 166 (199)
T PF11355_consen 90 KPLLQLSKSGVDVSLGASQYEDG-QLGLPFSLTNQS-SQ-SVVLVELEVTLFDDSGQLLKTETVKVWQSIKRMPDTYLRP 166 (199)
T ss_pred ccchhhhcCCeeEEEeccceeCC-eEEEEEEEecCC-Cc-eEEEEEEEEEEEcCCCCEeeEeeeehhhhhhhChhhccCc
Confidence 44555567777777777889999 999998643332 22 455555556789999999875 5888999999998863
No 13
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=24.55 E-value=1e+02 Score=22.01 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=34.0
Q ss_pred CCceEEEEEEeCCCCCCCCcceEEeecccceeccCceEeecchHHHHHHHHHHh
Q 032567 77 SDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGVLVEGLFWKDVLALLDEY 130 (138)
Q Consensus 77 DDkYtLtIt~~d~ks~~~r~e~s~tKSVa~fFDenG~Lv~~lf~~eV~kL~~sl 130 (138)
-.+-+|.|.+.|.+++ +.-..-+....+++++. ....+..-|.++++.+
T Consensus 100 ~~~g~L~i~i~D~~~~----~~vW~g~a~~~~~~~~~-~~~~i~~~V~~i~~~f 148 (151)
T PF13590_consen 100 YYEGTLVIDIIDAKTN----KVVWRGTASGRLSDNAD-REEAIPKAVNKIFEQF 148 (151)
T ss_pred EEEEEEEEEEEeCCCC----CEEEEEEEEeccCCCcC-HHHHHHHHHHHHHHhC
Confidence 4566899999998764 34466666666777665 6666777777776654
No 14
>PF06413 Neugrin: Neugrin; InterPro: IPR010487 This family contains mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation []. Homologues of neugrin are found in fungi suggesting they have a alternative role or more than one function.
Probab=23.05 E-value=35 Score=28.34 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=10.5
Q ss_pred cceeccCceEee
Q 032567 105 TQWFAKDGVLVE 116 (138)
Q Consensus 105 a~fFDenG~Lv~ 116 (138)
.+|||.||.|+.
T Consensus 212 ~eFfDsdGnFLY 223 (225)
T PF06413_consen 212 REFFDSDGNFLY 223 (225)
T ss_pred cccCCCCCCeec
Confidence 789999999874
No 15
>KOG4761 consensus Proteasome formation inhibitor PI31 [Posttranslational modification, protein turnover, chaperones]
Probab=22.39 E-value=1.1e+02 Score=26.61 Aligned_cols=47 Identities=13% Similarity=0.021 Sum_probs=30.5
Q ss_pred CcEEEeecC---------CCCCCceEEEEEEeCCCCC--------------------CCCcceEEeecccceeccCce
Q 032567 65 TGLVVSSKL---------PRFSDLYTLTVASADPKSI--------------------SAGQPVEFTKSVTQWFAKDGV 113 (138)
Q Consensus 65 ~~w~iSSsl---------kKyDDkYtLtIt~~d~ks~--------------------~~r~e~s~tKSVa~fFDenG~ 113 (138)
...+.|+.+ .++||+|+|+-+.. ++.+ .++ -+.++=-+..+.|+.+.
T Consensus 49 ~~da~S~~~~c~~~pdgWN~d~d~Yal~Y~~~-gs~kyLvka~~~e~sLlinll~~~sk~-~a~l~le~e~yvdes~~ 124 (266)
T KOG4761|consen 49 PQDAGSELLQCEVGPDGWNEDDDEYALRYTDP-GSKKYLVKALAMEDSLLINLLASGSKE-VAHLCLEPEDYVDESCE 124 (266)
T ss_pred chhhcccccccccCccccccCCceeEEEEecC-cchhheeeeeecccceehhhhhcCCcc-eeEEEechhhccccccC
Confidence 344556666 78999999987764 1111 222 56677777778887765
No 16
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=21.93 E-value=49 Score=22.09 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=10.9
Q ss_pred ceeccCceEeecchHH
Q 032567 106 QWFAKDGVLVEGLFWK 121 (138)
Q Consensus 106 ~fFDenG~Lv~~lf~~ 121 (138)
-|+||||.+|--.+..
T Consensus 13 ~FYDen~~lVrv~vrD 28 (54)
T PF12142_consen 13 LFYDENGQLVRVKVRD 28 (54)
T ss_dssp EEE-TTS-EEEEEGGG
T ss_pred EEECCCCCEEEEEhhh
Confidence 6899999999766543
No 17
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=21.54 E-value=43 Score=28.65 Aligned_cols=12 Identities=67% Similarity=1.608 Sum_probs=11.1
Q ss_pred CCCCccccccch
Q 032567 2 CSDWFCGPFPLS 13 (138)
Q Consensus 2 ~~~~~~~~~~~~ 13 (138)
|++||.||.|.|
T Consensus 152 cs~~Y~G~~pfS 163 (300)
T cd03872 152 CDDTYCGPFPES 163 (300)
T ss_pred CCCCCCCCCCCC
Confidence 999999999976
No 18
>PF14903 WG_beta_rep: WG containing repeat
Probab=21.09 E-value=14 Score=20.57 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=17.7
Q ss_pred eeccCceEeecchHHHHHHHHHHhhc
Q 032567 107 WFAKDGVLVEGLFWKDVLALLDEYAI 132 (138)
Q Consensus 107 fFDenG~Lv~~lf~~eV~kL~~sl~~ 132 (138)
++|.+|..+-++--.++..+.+.++.
T Consensus 3 ~id~~G~~vi~~~yd~i~~~~~g~~~ 28 (35)
T PF14903_consen 3 YIDKNGKIVIPPKYDEIYPFSNGYAI 28 (35)
T ss_pred EEeCCCCEEEEccccCccccCCCEEE
Confidence 57888888887766666655554443
No 19
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=20.28 E-value=55 Score=23.08 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=7.6
Q ss_pred ceeccCceEeecc
Q 032567 106 QWFAKDGVLVEGL 118 (138)
Q Consensus 106 ~fFDenG~Lv~~l 118 (138)
.|||++|.-+.+.
T Consensus 47 ~WyD~~G~~v~~~ 59 (94)
T PF07233_consen 47 YWYDKQGLEVDPE 59 (94)
T ss_dssp EEE-TTS-EE--T
T ss_pred EEECCCCCCcCCC
Confidence 5999999988654
No 20
>PF05526 R_equi_Vir: Rhodococcus equi virulence-associated protein; InterPro: IPR008810 This family consists of several virulence-associated proteins from Corynebacterium equii (Rhodococcus equi). R. equi is an important pulmonary pathogen of foals and is increasingly isolated from pneumonic infections and other infections in Homo sapiens immunodeficiency virus-infected patients. Isolates from foals possess a large virulence plasmid, varying in size from 80 to 90 kb. Isolates lacking the plasmid are avirulent to foals. Little is known about the function of the plasmid apart from its encoding a virulence associated surface protein [].
Probab=20.14 E-value=1.4e+02 Score=24.42 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.5
Q ss_pred ceEeecchHHHHHHHHHHh
Q 032567 112 GVLVEGLFWKDVLALLDEY 130 (138)
Q Consensus 112 G~Lv~~lf~~eV~kL~~sl 130 (138)
|.|--.+|-+|+++||++=
T Consensus 113 g~~~GtLfT~Dl~rLY~dT 131 (177)
T PF05526_consen 113 GALWGTLFTSDLQRLYSDT 131 (177)
T ss_pred ceEEEEEehhHHHHHhhhh
Confidence 6788899999999999864
Done!