Query 032567
Match_columns 138
No_of_seqs 98 out of 100
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 04:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k63_A Conserved hypothetical 29.9 46 0.0016 24.7 3.4 31 79-114 78-116 (126)
2 3u7r_A NADPH-dependent FMN red 27.6 27 0.00092 26.3 1.8 86 46-132 65-176 (190)
3 2v2f_A Penicillin binding prot 24.1 30 0.001 18.1 1.1 14 105-118 7-20 (26)
4 2yrl_A KIAA1837 protein; PKD d 23.8 47 0.0016 22.5 2.3 16 77-92 68-83 (102)
5 3v38_A Carboxypeptidase T; hyd 20.8 29 0.001 28.3 0.9 12 2-13 164-175 (326)
6 3kij_A Probable glutathione pe 20.4 51 0.0018 23.0 2.0 27 107-133 141-175 (180)
7 3dmc_A NTF2-like protein; stru 19.2 49 0.0017 22.7 1.7 30 74-113 103-132 (134)
8 1xzo_A BSSCO, hypothetical pro 19.1 1.1E+02 0.0036 20.6 3.4 28 106-133 140-173 (174)
9 3dgv_A TAFI, carboxypeptidase 17.4 39 0.0013 28.6 0.9 12 2-13 252-263 (401)
10 2dcv_A Tachystatin-B1; antimic 17.1 30 0.001 21.4 0.1 7 2-9 11-17 (42)
No 1
>3k63_A Conserved hypothetical membrane lipoprotein; Q9PRA0, PF04200, DUF1976, UUR17A, NESG., structural genomics, PSI-2, protein structure initiative; 2.49A {Ureaplasma parvum} PDB: 3jvc_A
Probab=29.85 E-value=46 Score=24.72 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=21.2
Q ss_pred ceEEEEEEeCCCCCCCCcceEEeecc--cce------eccCceE
Q 032567 79 LYTLTVASADPKSISAGQPVEFTKSV--TQW------FAKDGVL 114 (138)
Q Consensus 79 kYtLtIt~~d~ks~~~r~e~s~tKSV--a~f------FDenG~L 114 (138)
...|.|++.|.++++ .+.+++ ..| +||||++
T Consensus 78 ~l~l~l~v~DkKt~k-----~f~~~i~v~~FKTNpyG~DEngti 116 (126)
T 3k63_A 78 TLKLSLMLTDKKNNQ-----VYYKLLEVSGFKSNPYGVDENGTI 116 (126)
T ss_dssp CEEEEEEEEETTTCC-----EEEEEEEECCSCCCTTCCCTTCCC
T ss_pred eeEEEEEEeecccce-----EEEEEEEecccccCCCCcCcCCCC
Confidence 568889999988754 244443 333 8999975
No 2
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=27.57 E-value=27 Score=26.28 Aligned_cols=86 Identities=10% Similarity=0.057 Sum_probs=54.4
Q ss_pred eeeeeeeeeccC-CCCCCC---CCcEEEeec---CCCCCCceEEEEEEeCCCCCCC-------------C------cceE
Q 032567 46 IISIHHLRGKFF-GQGSFT---STGLVVSSK---LPRFSDLYTLTVASADPKSISA-------------G------QPVE 99 (138)
Q Consensus 46 ~~~~~~~l~t~d-~~G~~~---~~~w~iSSs---lkKyDDkYtLtIt~~d~ks~~~-------------r------~e~s 99 (138)
+-+||++++..| -.|+.| .+-+-+-|+ -.-|.+|-.+-++...|..+.. + .+..
T Consensus 65 i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a~~~Lr~vl~~lg~~v~~~p~~~ 144 (190)
T 3u7r_A 65 IEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALAQARLKNDLLHVGTVMMSMPEAY 144 (190)
T ss_dssp HHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHHHHHHHHHHHTTTCEECCCSCCE
T ss_pred HHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHHHHHHHHHHHHcCCEEccCCEEE
Confidence 567888887764 356555 222333332 2458889888888877654410 0 0122
Q ss_pred EeecccceeccCceEeecchHHHHHHHHHHhhc
Q 032567 100 FTKSVTQWFAKDGVLVEGLFWKDVLALLDEYAI 132 (138)
Q Consensus 100 ~tKSVa~fFDenG~Lv~~lf~~eV~kL~~sl~~ 132 (138)
+ ....+=||++|.+..+...+.+.++.+.|..
T Consensus 145 i-~~~~~~fd~~G~l~de~~~~~l~~~~~~~~~ 176 (190)
T 3u7r_A 145 I-QWHAEAYAADGSVTDEKTAKFLQGFVDAFVD 176 (190)
T ss_dssp E-ECCGGGBCTTSCBCSHHHHHHHHHHHHHHHH
T ss_pred E-eccHhcCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 2 2234569999999998888888888887753
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=24.09 E-value=30 Score=18.06 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=11.8
Q ss_pred cceeccCceEeecc
Q 032567 105 TQWFAKDGVLVEGL 118 (138)
Q Consensus 105 a~fFDenG~Lv~~l 118 (138)
+..+|.||.++..+
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 56799999999876
No 4
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.78 E-value=47 Score=22.46 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=13.4
Q ss_pred CCceEEEEEEeCCCCC
Q 032567 77 SDLYTLTVASADPKSI 92 (138)
Q Consensus 77 DDkYtLtIt~~d~ks~ 92 (138)
.-.|+++|++.|+.+.
T Consensus 68 ~G~y~f~LTVtD~~G~ 83 (102)
T 2yrl_A 68 VGTYVFTLTVKDERNL 83 (102)
T ss_dssp SSEEEEEEEEEBTTCC
T ss_pred CeEEEEEEEEEeCCCC
Confidence 5689999999998653
No 5
>3v38_A Carboxypeptidase T; hydrolase; HET: GOL; 1.50A {Thermoactinomyces vulgaris} PDB: 1obr_A 3qnv_A 3prt_A
Probab=20.76 E-value=29 Score=28.30 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=10.8
Q ss_pred CCCCccccccch
Q 032567 2 CSDWFCGPFPLS 13 (138)
Q Consensus 2 ~~~~~~~~~~~~ 13 (138)
|++||.||.|.|
T Consensus 164 c~~~Y~G~~p~s 175 (326)
T 3v38_A 164 SSETYRGRSAFS 175 (326)
T ss_dssp TSTTBCCSSTTC
T ss_pred CccccCCCCCCc
Confidence 999999999965
No 6
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=20.40 E-value=51 Score=23.00 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=21.3
Q ss_pred eeccCceEee--------cchHHHHHHHHHHhhcC
Q 032567 107 WFAKDGVLVE--------GLFWKDVLALLDEYAIE 133 (138)
Q Consensus 107 fFDenG~Lv~--------~lf~~eV~kL~~sl~~e 133 (138)
.+|.+|.++. +.++++|.++.+.+...
T Consensus 141 lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~~~ 175 (180)
T 3kij_A 141 LVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVIIK 175 (180)
T ss_dssp EECTTSCEEEEECTTCCGGGTHHHHHHHHHHHHHH
T ss_pred EECCCCCEEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence 6888888874 44778999999888766
No 7
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=19.22 E-value=49 Score=22.68 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=23.0
Q ss_pred CCCCCceEEEEEEeCCCCCCCCcceEEeecccceeccCce
Q 032567 74 PRFSDLYTLTVASADPKSISAGQPVEFTKSVTQWFAKDGV 113 (138)
Q Consensus 74 kKyDDkYtLtIt~~d~ks~~~r~e~s~tKSVa~fFDenG~ 113 (138)
+.|+..|...++++||+- .++.+|||.+|.
T Consensus 103 ~~y~~~~~~~f~v~dGkI----------~~~r~Y~d~~~~ 132 (134)
T 3dmc_A 103 KPYKNRVAVSFDVRGDKI----------CSYREYFGSDGK 132 (134)
T ss_dssp EEEEEEEEEEEEEETTEE----------EEEEEEECSCSB
T ss_pred cEeeccEEEEEEEECCEE----------EEEEEEECCCCC
Confidence 457778999999998732 346799999984
No 8
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=19.06 E-value=1.1e+02 Score=20.62 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=20.4
Q ss_pred ceeccCceEeec---ch---HHHHHHHHHHhhcC
Q 032567 106 QWFAKDGVLVEG---LF---WKDVLALLDEYAIE 133 (138)
Q Consensus 106 ~fFDenG~Lv~~---lf---~~eV~kL~~sl~~e 133 (138)
=.+|.+|.++.- .. .+++.+..+.|.++
T Consensus 140 ~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~ 173 (174)
T 1xzo_A 140 YLVGPDGKVLKDYNGVENTPYDDIISDVKSASTL 173 (174)
T ss_dssp EEECTTSEEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred EEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHhc
Confidence 578999999853 22 57788888877765
No 9
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein S glycoprotein, hydrolase, metal-binding, metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A* 3d67_A*
Probab=17.37 E-value=39 Score=28.56 Aligned_cols=12 Identities=50% Similarity=1.387 Sum_probs=10.8
Q ss_pred CCCCccccccch
Q 032567 2 CSDWFCGPFPLS 13 (138)
Q Consensus 2 ~~~~~~~~~~~~ 13 (138)
|++||.||.|.|
T Consensus 252 c~~~y~G~~p~s 263 (401)
T 3dgv_A 252 CSEIYCGTYPES 263 (401)
T ss_dssp TSTTBCCSSTTC
T ss_pred cccccCCCCcCc
Confidence 999999999965
No 10
>2dcv_A Tachystatin-B1; antimicrobial, cystine-knot, antimicrobial protein; NMR {Tachypleus tridentatus} PDB: 2dcw_A
Probab=17.07 E-value=30 Score=21.38 Aligned_cols=7 Identities=29% Similarity=0.733 Sum_probs=4.6
Q ss_pred CCCCcccc
Q 032567 2 CSDWFCGP 9 (138)
Q Consensus 2 ~~~~~~~~ 9 (138)
|.||. ||
T Consensus 11 CadWs-gp 17 (42)
T 2dcv_A 11 CRVYS-GR 17 (42)
T ss_dssp EETTC-SS
T ss_pred eeccc-CC
Confidence 67775 55
Done!