BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032568
(138 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225446712|ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
vinifera]
gi|147856183|emb|CAN80281.1| hypothetical protein VITISV_017448 [Vitis vinifera]
gi|302143481|emb|CBI22042.3| unnamed protein product [Vitis vinifera]
Length = 138
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/138 (96%), Positives = 137/138 (99%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVA+IL+HKYEQLQQ SDDP+NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>gi|224083811|ref|XP_002307132.1| predicted protein [Populus trichocarpa]
gi|224096326|ref|XP_002310604.1| predicted protein [Populus trichocarpa]
gi|222853507|gb|EEE91054.1| predicted protein [Populus trichocarpa]
gi|222856581|gb|EEE94128.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/138 (96%), Positives = 137/138 (99%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGD+FLKAKCLMNCEVA+IL+HKYEQLQQ SDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>gi|388495724|gb|AFK35928.1| unknown [Lotus japonicus]
Length = 138
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 132/138 (95%), Positives = 137/138 (99%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HKYEQLQQ+SDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>gi|351727683|ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycine max]
gi|255625623|gb|ACU13156.1| unknown [Glycine max]
Length = 138
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/138 (94%), Positives = 137/138 (99%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HKYEQLQQTSDDPMNQ+SQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIK+RGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQD 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>gi|351724197|ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycine max]
gi|255632071|gb|ACU16388.1| unknown [Glycine max]
Length = 138
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/138 (94%), Positives = 137/138 (99%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HKYEQLQQTSDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIA+VPSIK+RGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAVVPSIKSRGRAQD 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>gi|255562011|ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 138
Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 130/138 (94%), Positives = 136/138 (98%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENA+ELKIGDEFLKAKCLMNCEVA+IL+HKYEQLQQ S+DPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKML DLS+IKKFE
Sbjct: 121 DEAIEKMLTDLSMIKKFE 138
>gi|357513237|ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520929|gb|AET01383.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|388497296|gb|AFK36714.1| unknown [Medicago truncatula]
Length = 138
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 131/138 (94%), Positives = 136/138 (98%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HKYEQLQQ+SDD MNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>gi|449441240|ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
gi|449526195|ref|XP_004170099.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 127/138 (92%), Positives = 135/138 (97%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HKYEQLQQ S+DP NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAIAMVPS+KT+GR HD
Sbjct: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLNDLSLIK+FE
Sbjct: 121 DEAIEKMLNDLSLIKRFE 138
>gi|351722549|ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycine max]
gi|255632992|gb|ACU16850.1| unknown [Glycine max]
Length = 195
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 129/135 (95%), Positives = 134/135 (99%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVA+IL+HKYEQLQQTSDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREIL+RY+LAEFELCVLGNLCPETVEEAIAMVPSIK+RGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYELAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQD 120
Query: 121 DEAIEKMLNDLSLIK 135
DEAIEKMLNDLSLIK
Sbjct: 121 DEAIEKMLNDLSLIK 135
>gi|297807017|ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
gi|297317229|gb|EFH47651.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
Length = 138
Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 125/138 (90%), Positives = 136/138 (98%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HK+EQLQQ S+DPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+AMVPS+KT+GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLNDLSL+K+FE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138
>gi|15242547|ref|NP_196554.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
gi|2760362|gb|AAB95261.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|9758970|dbj|BAB09413.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|21554212|gb|AAM63291.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|98960869|gb|ABF58918.1| At5g09920 [Arabidopsis thaliana]
gi|222423668|dbj|BAH19801.1| AT5G09920 [Arabidopsis thaliana]
gi|332004084|gb|AED91467.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
Length = 138
Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 125/138 (90%), Positives = 136/138 (98%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HK+EQLQQ S+DPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+AMVPS+KT+GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLNDLSL+K+FE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138
>gi|146403790|gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [Artemisia annua]
Length = 138
Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 127/138 (92%), Positives = 133/138 (96%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++ILDHK EQLQ SDDP NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCPETVEEAIAMVPSIK+RGR HD
Sbjct: 61 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRGHD 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLND+SLIKKFE
Sbjct: 121 DEAIEKMLNDMSLIKKFE 138
>gi|449447482|ref|XP_004141497.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 124/138 (89%), Positives = 134/138 (97%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HKYEQLQQ ++DP NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA ++VPS+KT+GR H+
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHE 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>gi|192910802|gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guineensis]
Length = 138
Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 124/138 (89%), Positives = 133/138 (96%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIG+EFLKAKCLMNCEVA+ILD KYEQLQQ SDDP NQ+SQVFEKS+Q
Sbjct: 1 MSGEEEENAAELKIGEEFLKAKCLMNCEVALILDRKYEQLQQLSDDPTNQISQVFEKSMQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKN DAVRQVREILSRY+LAEFELCVLGNLCPETVEEAIAMVPSIK++GR H+
Sbjct: 61 YVKRFSRYKNQDAVRQVREILSRYRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRIHE 120
Query: 121 DEAIEKMLNDLSLIKKFE 138
D+AIEKMLNDLSLIKKFE
Sbjct: 121 DDAIEKMLNDLSLIKKFE 138
>gi|449482280|ref|XP_004156236.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 139
Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/137 (88%), Positives = 131/137 (95%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HKYEQLQQ ++DP NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA ++VPS+KT+GR H+
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHE 120
Query: 121 DEAIEKMLNDLSLIKKF 137
DEAIEKMLNDLSLIK
Sbjct: 121 DEAIEKMLNDLSLIKSL 137
>gi|356525584|ref|XP_003531404.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB4-like [Glycine max]
Length = 136
Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/138 (86%), Positives = 127/138 (92%), Gaps = 2/138 (1%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
M E+EENAAELKIGDEFLKAKCLMNCEVA+I +HKY QLQQ SDDPMNQVSQVFEKS Q
Sbjct: 1 MYVEKEENAAELKIGDEFLKAKCLMNCEVALIPEHKYXQLQQISDDPMNQVSQVFEKSQQ 60
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
YVKRFSRYKNPDAVR +IL+RYQLAEFELCVLGNLC ETVEEAIAMVPSI++RGRA D
Sbjct: 61 YVKRFSRYKNPDAVRD--KILARYQLAEFELCVLGNLCLETVEEAIAMVPSIESRGRAQD 118
Query: 121 DEAIEKMLNDLSLIKKFE 138
DEAIEKMLNDLSLIKKFE
Sbjct: 119 DEAIEKMLNDLSLIKKFE 136
>gi|242063790|ref|XP_002453184.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
gi|241933015|gb|EES06160.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
Length = 143
Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/143 (81%), Positives = 124/143 (86%), Gaps = 5/143 (3%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSD--DPMNQVSQVFEKS 58
MSGEEEENAAELKIG+EFLKAKCLMNCEVAIIL+HKYEQ+QQ S DP +QVSQVFEKS
Sbjct: 1 MSGEEEENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQQHSSESDPSSQVSQVFEKS 60
Query: 59 LQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR- 117
LQYVKRFSRYKNPDAVRQVRE LSRY LAEFELC LGNLCP+T EA A+VPS+K+ GR
Sbjct: 61 LQYVKRFSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKSGGRF 120
Query: 118 --AHDDEAIEKMLNDLSLIKKFE 138
DE IEKMLNDLSLIKKFE
Sbjct: 121 VGDARDEKIEKMLNDLSLIKKFE 143
>gi|226497040|ref|NP_001148722.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|226958433|ref|NP_001152952.1| LOC100285981 [Zea mays]
gi|195607822|gb|ACG25741.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195621652|gb|ACG32656.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195655327|gb|ACG47131.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|223946753|gb|ACN27460.1| unknown [Zea mays]
gi|413926837|gb|AFW66769.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 144
Score = 228 bits (580), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 115/144 (79%), Positives = 124/144 (86%), Gaps = 6/144 (4%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQ---TSDDPMNQVSQVFEK 57
MSGEEEENAAELKIG+EFLKAKCLMNCEVAIIL+HKYEQ+QQ + DP +QVSQVFEK
Sbjct: 1 MSGEEEENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQQHASSESDPSSQVSQVFEK 60
Query: 58 SLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR 117
SLQYVKRFSRYKNPDAVRQVRE LSRY LAEFELC LGNLCP+T EA A+VPS+K+ GR
Sbjct: 61 SLQYVKRFSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKSGGR 120
Query: 118 ---AHDDEAIEKMLNDLSLIKKFE 138
DE IEKMLNDLSLIKKFE
Sbjct: 121 FVGDPGDEKIEKMLNDLSLIKKFE 144
>gi|115443807|ref|NP_001045683.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|41052832|dbj|BAD07723.1| putative 15.9 kDa subunit of RNA polymerase II [Oryza sativa
Japonica Group]
gi|113535214|dbj|BAF07597.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|125537811|gb|EAY84206.1| hypothetical protein OsI_05586 [Oryza sativa Indica Group]
gi|125580570|gb|EAZ21501.1| hypothetical protein OsJ_05124 [Oryza sativa Japonica Group]
gi|215768240|dbj|BAH00469.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/142 (80%), Positives = 125/142 (88%), Gaps = 4/142 (2%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSD-DPMNQVSQVFEKSL 59
MSGEEEENAAELKIG+EFLKAKCLMNCEVAIIL+HKYEQ+Q SD DP +QVSQVFEKSL
Sbjct: 1 MSGEEEENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQHMSDGDPSSQVSQVFEKSL 60
Query: 60 QYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 119
QYVKRFSRYKNPDAVRQVRE LSRY LAEFELC LGNLCP+T +EA A+VPS+++ GR
Sbjct: 61 QYVKRFSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSDEASALVPSLRSGGRFV 120
Query: 120 DD---EAIEKMLNDLSLIKKFE 138
D E I+KMLNDLSLIKKFE
Sbjct: 121 GDPGSEKIDKMLNDLSLIKKFE 142
>gi|301298709|gb|ADK66819.1| putative RNA polymerase II subunit [Saccharum hybrid cultivar
SP80-3280]
Length = 143
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/143 (80%), Positives = 123/143 (86%), Gaps = 5/143 (3%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSD--DPMNQVSQVFEKS 58
MSGEEEENAAELKIG+EFLKAKCLMNCEVAIIL+HKYEQ+ Q S DP +QVSQVFEKS
Sbjct: 1 MSGEEEENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQILQHSSESDPSSQVSQVFEKS 60
Query: 59 LQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR- 117
LQYVKRFSRYKNPDAVRQVRE LSRY LAEFELC LGNLCP+T EA A+VPS+K+ GR
Sbjct: 61 LQYVKRFSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKSGGRF 120
Query: 118 --AHDDEAIEKMLNDLSLIKKFE 138
DE IEKMLNDLSLIKKFE
Sbjct: 121 VGDAGDEKIEKMLNDLSLIKKFE 143
>gi|357513239|ref|XP_003626908.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520930|gb|AET01384.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
Length = 114
Score = 224 bits (572), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 107/114 (93%), Positives = 112/114 (98%)
Query: 25 MNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRY 84
MNCEV++IL+HKYEQLQQ+SDD MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREIL+RY
Sbjct: 1 MNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILARY 60
Query: 85 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRA DDEAIEKMLNDLSLIKKFE
Sbjct: 61 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLSLIKKFE 114
>gi|217426791|gb|ACK44499.1| AT5G09920-like protein [Arabidopsis arenosa]
Length = 321
Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/116 (89%), Positives = 112/116 (96%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HK+EQLQQ S+DPMNQVSQVFEKSLQ
Sbjct: 148 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQ 207
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRG 116
YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+AMVPS+K R
Sbjct: 208 YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKWRS 263
>gi|357144504|ref|XP_003573316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Brachypodium distachyon]
Length = 141
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/141 (78%), Positives = 121/141 (85%), Gaps = 3/141 (2%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSD---DPMNQVSQVFEK 57
MSGEEEENAAELKIG+EFLKAK LMNCEVAIIL+H+YEQLQQ SD DP +Q+SQVFEK
Sbjct: 1 MSGEEEENAAELKIGEEFLKAKSLMNCEVAIILEHRYEQLQQMSDGGGDPSSQMSQVFEK 60
Query: 58 SLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR 117
SL YVKRFSRYKNPDAVRQVRE LSRY L EFELC LGNLCP+T +EA A+VPS+ GR
Sbjct: 61 SLGYVKRFSRYKNPDAVRQVRETLSRYGLHEFELCTLGNLCPDTADEAKALVPSLVPGGR 120
Query: 118 AHDDEAIEKMLNDLSLIKKFE 138
DE I+KMLNDLSLIKKFE
Sbjct: 121 FDVDERIDKMLNDLSLIKKFE 141
>gi|168028875|ref|XP_001766952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681694|gb|EDQ68118.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 142
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/134 (71%), Positives = 118/134 (88%), Gaps = 1/134 (0%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A+ELK+G++F+KAKCLMN EVA++L KYEQLQQ +DDP +Q+SQVFE+SLQYV+R
Sbjct: 10 EEEDASELKLGEDFVKAKCLMNAEVALVLQRKYEQLQQLADDPSSQISQVFERSLQYVRR 69
Query: 65 FSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
FSRY+NPDAV+QVRE+L+R QL EFE+CV+GNLCPETVEEA A+VPSI RGR D+E I
Sbjct: 70 FSRYQNPDAVKQVREVLTRNQLHEFEVCVIGNLCPETVEEAKALVPSITKRGRM-DEEKI 128
Query: 125 EKMLNDLSLIKKFE 138
E ML DL+ IKKFE
Sbjct: 129 ETMLTDLATIKKFE 142
>gi|302768831|ref|XP_002967835.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
gi|302799846|ref|XP_002981681.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300150513|gb|EFJ17163.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300164573|gb|EFJ31182.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
Length = 136
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/136 (71%), Positives = 113/136 (83%), Gaps = 1/136 (0%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
EEE+A+ELK+G++FLK KCLMN EVA IL HKY+ Q SDDP +Q+SQVFEKS YV
Sbjct: 2 ANEEEDASELKLGEDFLKEKCLMNAEVAKILQHKYDTANQMSDDPSSQLSQVFEKSFAYV 61
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
KRFSRYKNP+AV+QVRE+LSR QLAEFE+CVLGNLCPETVEEA A+VPSI +GR DDE
Sbjct: 62 KRFSRYKNPEAVQQVREVLSRNQLAEFEVCVLGNLCPETVEEATALVPSIAKKGRL-DDE 120
Query: 123 AIEKMLNDLSLIKKFE 138
IE+ML DL+ IK FE
Sbjct: 121 RIEQMLADLARIKTFE 136
>gi|72255603|gb|AAZ66921.1| 117M18_2 [Brassica rapa]
Length = 329
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 95/126 (75%), Gaps = 26/126 (20%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQ---------- 50
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HKYEQLQQ S+DPMNQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQRFTVKLAIKR 60
Query: 51 --VSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAM 108
VFEKSLQYVKRFSRYKNPDAVRQ LCVLGNLCPET EEA+AM
Sbjct: 61 YRSCWVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETAEEAVAM 106
Query: 109 VPSIKT 114
VPS+K+
Sbjct: 107 VPSLKS 112
>gi|388502530|gb|AFK39331.1| unknown [Lotus japonicus]
Length = 83
Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 79/79 (100%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEV++IL+HKYEQLQQ+SDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVRE 79
YVKRFSRYKNPDAVRQVRE
Sbjct: 61 YVKRFSRYKNPDAVRQVRE 79
>gi|440804477|gb|ELR25354.1| DNAdirected RNA polymerase II subunit rpb4, putative [Acanthamoeba
castellanii str. Neff]
Length = 135
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 95/135 (70%), Gaps = 4/135 (2%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
+EEE+A+ L++G +F A CL+N EVAI+L+H+ +Q ++ ++S VF K+L YV+
Sbjct: 5 QEEEDASLLRLGLDFQNANCLLNSEVAILLEHR-QQTAAVQEEGEAELSNVFLKTLSYVQ 63
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
RFSRYK AV++VR +L+ +L EFE+ L NLCPET EEA +++PS+ R DDE
Sbjct: 64 RFSRYKTKAAVKEVRSLLTEKELEEFEIAALSNLCPETAEEAKSLIPSLAKR---FDDEE 120
Query: 124 IEKMLNDLSLIKKFE 138
++ +LNDL+ ++FE
Sbjct: 121 LQSVLNDLASFRRFE 135
>gi|313219963|emb|CBY43664.1| unnamed protein product [Oikopleura dioica]
gi|313232607|emb|CBY19277.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 90/134 (67%), Gaps = 5/134 (3%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE+AA+L+ EF + LMN EV ++L+H+ + + DD ++S+VF+K+L Y KR
Sbjct: 8 DEEDAAQLQFPKEFQETTTLMNSEVKVLLEHRMKNDEGRRDDV--ELSEVFQKTLDYCKR 65
Query: 65 FSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
FS++KN D + VR +L+ +L FE+ L NLCPET +EA A++PS++ R DE +
Sbjct: 66 FSKFKNQDVIVNVRTMLTSKRLHRFEIAALANLCPETADEAKALIPSMEGR---FPDEEL 122
Query: 125 EKMLNDLSLIKKFE 138
++ML+D++ + F+
Sbjct: 123 QQMLDDMATQRSFQ 136
>gi|126325917|ref|XP_001366384.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EEA A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|395519329|ref|XP_003763803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Sarcophilus
harrisii]
Length = 142
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EEA A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|115497864|ref|NP_001069926.1| DNA-directed RNA polymerase II subunit RPB4 [Bos taurus]
gi|94574089|gb|AAI16156.1| Polymerase (RNA) II (DNA directed) polypeptide D [Bos taurus]
gi|296490760|tpg|DAA32873.1| TPA: RNA polymerase II polypeptide D [Bos taurus]
gi|440907193|gb|ELR57366.1| DNA-directed RNA polymerase II subunit RPB4 [Bos grunniens mutus]
Length = 142
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
SG+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 SGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|291226512|ref|XP_002733236.1| PREDICTED: DNA directed RNA polymerase II polypeptide D-like
[Saccoglossus kowalevskii]
Length = 141
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 93/134 (69%), Gaps = 5/134 (3%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A+ELK EF +A+ L+N EV ++L+H+ + Q S + ++S+VF K+L Y +R
Sbjct: 12 EEEDASELKFPKEFEQAETLLNSEVHMLLEHR--KAQNESAEEEQELSEVFMKTLNYTQR 69
Query: 65 FSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
FSR+KN + + +VR +L + +L +FEL + NLCPE+ EEA A++PS++ R +DE +
Sbjct: 70 FSRFKNRETITEVRSLLMQKKLHKFELSSISNLCPESAEEAKALIPSLEGR---FEDEEL 126
Query: 125 EKMLNDLSLIKKFE 138
+++L+++ + F+
Sbjct: 127 QEILDNIQTKRSFQ 140
>gi|426220671|ref|XP_004004537.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Ovis aries]
Length = 142
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
SG+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 SGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|198434387|ref|XP_002127588.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide D [Ciona intestinalis]
Length = 145
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 90/135 (66%), Gaps = 5/135 (3%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
E+EE++++L+ EF A+ L+N EV ++L+H+ Q + D+ ++S+VF K+L Y +
Sbjct: 15 EQEEDSSQLQFPQEFESAETLLNSEVHMLLEHRKSQNENADDE--QELSEVFMKTLNYTQ 72
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
RFSR+KN + + VR +L + L +FEL L NLCPET EEA A+VPS++ R +DE
Sbjct: 73 RFSRFKNRETITSVRGLLLQKDLHKFELASLANLCPETAEEAKALVPSLEGR---FEDED 129
Query: 124 IEKMLNDLSLIKKFE 138
++++L D+ + F+
Sbjct: 130 LQQVLEDIQTKRSFQ 144
>gi|395855890|ref|XP_003800379.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Otolemur
garnettii]
Length = 142
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 68 TSRFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|317593877|ref|NP_001187972.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus punctatus]
gi|308322187|gb|ADO28231.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus furcatus]
gi|308324485|gb|ADO29377.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus punctatus]
Length = 141
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 90/136 (66%), Gaps = 5/136 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 GDIEEDASQLSFPKEFENAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYT 67
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
RFSR+KN + + VR +L + +L +FEL L NLCPE EEA A++PS++ R +DE
Sbjct: 68 ARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDE 124
Query: 123 AIEKMLNDLSLIKKFE 138
++++L+D+ + F+
Sbjct: 125 ELQQILDDIQTKRSFQ 140
>gi|431907394|gb|ELK11340.1| DNA-directed RNA polymerase II subunit RPB4 [Pteropus alecto]
Length = 149
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 17 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 74
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 75 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 131
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 132 EELQQILDDIQTKRSFQ 148
>gi|83754528|pdb|2C35|A Chain A, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754530|pdb|2C35|C Chain C, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754532|pdb|2C35|E Chain E, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754534|pdb|2C35|G Chain G, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
Length = 152
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 20 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 77
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 78 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 134
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 135 EELQQILDDIQTKRSFQ 151
>gi|344290054|ref|XP_003416754.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Loxodonta africana]
Length = 142
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|4758574|ref|NP_004796.1| DNA-directed RNA polymerase II subunit RPB4 [Homo sapiens]
gi|21312246|ref|NP_081278.1| DNA-directed RNA polymerase II subunit RPB4 isoform 1 [Mus
musculus]
gi|157820569|ref|NP_001102356.1| DNA-directed RNA polymerase II subunit RPB4 [Rattus norvegicus]
gi|354459066|ref|NP_001238888.1| DNA-directed RNA polymerase II subunit RPB4 [Pan troglodytes]
gi|73984138|ref|XP_540983.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Canis lupus
familiaris]
gi|297668367|ref|XP_002812414.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Pongo
abelii]
gi|301784665|ref|XP_002927746.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Ailuropoda melanoleuca]
gi|332258210|ref|XP_003278192.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Nomascus
leucogenys]
gi|410968462|ref|XP_003990724.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Felis
catus]
gi|426337134|ref|XP_004032578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Gorilla
gorilla gorilla]
gi|3024558|sp|O15514.1|RPB4_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D; AltName:
Full=RNA polymerase II 16 kDa subunit; Short=RPB16
gi|50401678|sp|Q9D7M8.2|RPB4_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|2253633|gb|AAC80226.1| RNA polymerase II subunit hsRPB4 [Homo sapiens]
gi|2253635|gb|AAC52056.1| RNA polymerase II subunit hsRPB4 [Homo sapiens]
gi|12847830|dbj|BAB27725.1| unnamed protein product [Mus musculus]
gi|16877972|gb|AAH17205.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|62739523|gb|AAH93795.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|62739756|gb|AAH93797.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|119615750|gb|EAW95344.1| polymerase (RNA) II (DNA directed) polypeptide D, isoform CRA_a
[Homo sapiens]
gi|119615751|gb|EAW95345.1| polymerase (RNA) II (DNA directed) polypeptide D, isoform CRA_a
[Homo sapiens]
gi|148664625|gb|EDK97041.1| polymerase (RNA) II (DNA directed) polypeptide D [Mus musculus]
gi|149017124|gb|EDL76175.1| polymerase (RNA) II (DNA directed) polypeptide D (predicted)
[Rattus norvegicus]
gi|208967080|dbj|BAG73554.1| polymerase (RNA) II (DNA directed) polypeptide D [synthetic
construct]
gi|281342733|gb|EFB18317.1| hypothetical protein PANDA_017559 [Ailuropoda melanoleuca]
gi|410214932|gb|JAA04685.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410259190|gb|JAA17561.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410287726|gb|JAA22463.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410350453|gb|JAA41830.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|444721464|gb|ELW62200.1| DNA-directed RNA polymerase II subunit RPB4 [Tupaia chinensis]
Length = 142
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|50539702|ref|NP_001002317.1| DNA-directed RNA polymerase II subunit RPB4 [Danio rerio]
gi|49619057|gb|AAT68113.1| RNA polymerase II subunit D [Danio rerio]
gi|66267586|gb|AAH95261.1| Polymerase (RNA) II (DNA directed) polypeptide D [Danio rerio]
gi|182888836|gb|AAI64278.1| Polr2d protein [Danio rerio]
Length = 141
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 90/136 (66%), Gaps = 5/136 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 GDVEEDASQLMFPKEFENAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYT 67
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
RFSR+KN + + VR +L + +L +FEL L NLCPE EEA A++PS++ R +DE
Sbjct: 68 ARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDE 124
Query: 123 AIEKMLNDLSLIKKFE 138
++++L+D+ + F+
Sbjct: 125 ELQQILDDIQTKRSFQ 140
>gi|392306987|ref|NP_001254716.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|402892232|ref|XP_003909323.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Papio
anubis]
gi|355566071|gb|EHH22500.1| hypothetical protein EGK_05780 [Macaca mulatta]
gi|355751666|gb|EHH55921.1| hypothetical protein EGM_05224 [Macaca fascicularis]
gi|380808166|gb|AFE75958.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|383410355|gb|AFH28391.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|384943808|gb|AFI35509.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
Length = 142
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|410910710|ref|XP_003968833.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Takifugu rubripes]
Length = 142
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 91/136 (66%), Gaps = 5/136 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 11 GDVEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYT 68
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
RFSR+KN + + VR +L + +L +FEL L NLCPE EEA A++PS++ GR DDE
Sbjct: 69 ARFSRFKNRETIAAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE--GRFEDDE 126
Query: 123 AIEKMLNDLSLIKKFE 138
++++L+D+ + F+
Sbjct: 127 -LQQILDDIQTKRSFQ 141
>gi|226443030|ref|NP_001140015.1| DNA-directed RNA polymerase II subunit RPB4 [Salmo salar]
gi|221221172|gb|ACM09247.1| DNA-directed RNA polymerase II subunit RPB4 [Salmo salar]
Length = 143
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 90/136 (66%), Gaps = 5/136 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 12 GDIEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYT 69
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
RFSR+KN + + VR +L + +L +FEL L NLCPE EEA A++PS++ R +DE
Sbjct: 70 ARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSVEGR---FEDE 126
Query: 123 AIEKMLNDLSLIKKFE 138
++++L+D+ + F+
Sbjct: 127 ELQQILDDIQTKRSFQ 142
>gi|225716064|gb|ACO13878.1| DNA-directed RNA polymerase II subunit RPB4 [Esox lucius]
Length = 143
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 90/136 (66%), Gaps = 5/136 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 12 GDVEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYT 69
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
RFSR+KN + + VR +L + +L +FEL L NLCPE EEA A++PS++ R +DE
Sbjct: 70 ARFSRFKNRETIGSVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDE 126
Query: 123 AIEKMLNDLSLIKKFE 138
++++L+D+ + F+
Sbjct: 127 ELQQILDDIQTKRSFQ 142
>gi|225706322|gb|ACO09007.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Osmerus mordax]
Length = 144
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 90/136 (66%), Gaps = 5/136 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 13 GDVEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYT 70
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
RFSR+KN + + VR +L + +L +FEL L NLCPE EEA A++PS++ R +DE
Sbjct: 71 ARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDE 127
Query: 123 AIEKMLNDLSLIKKFE 138
++++L+D+ + F+
Sbjct: 128 ELQQILDDIQTKRSFQ 143
>gi|350538413|ref|NP_001232096.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|118094833|ref|XP_422576.2| PREDICTED: uncharacterized protein LOC424754 [Gallus gallus]
gi|326925590|ref|XP_003208995.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Meleagris gallopavo]
gi|197127794|gb|ACH44292.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|197127795|gb|ACH44293.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|197127796|gb|ACH44294.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 89/133 (66%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RF
Sbjct: 14 EEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARF 71
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE ++
Sbjct: 72 SRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FEDEELQ 128
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 129 QILDDIQTKRSFQ 141
>gi|330790380|ref|XP_003283275.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325086822|gb|EGC40206.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 138
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 90/134 (67%), Gaps = 8/134 (5%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
++EE+ + LK + AK L+N EVAI+L+H+ + S++ + +Q F K+L Y +
Sbjct: 12 QDEEDLSTLKFPKDLKDAKFLLNSEVAILLEHR----KLGSENEGLEFTQTFHKTLAYAE 67
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
+FSRYKN +++QVR LS+ L EF++ L NLCPET +EA +++PS+K D++A
Sbjct: 68 KFSRYKNKTSIKQVRAALSKQNLEEFQIASLANLCPETADEAKSLIPSLK----EMDEDA 123
Query: 124 IEKMLNDLSLIKKF 137
++ +L++LS ++KF
Sbjct: 124 LQAILDELSNLRKF 137
>gi|348540766|ref|XP_003457858.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Oreochromis niloticus]
Length = 144
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 90/136 (66%), Gaps = 5/136 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 13 GDVEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYT 70
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
RFSR+KN + + VR +L + +L +FEL L NLCPE EEA A++PS++ R +DE
Sbjct: 71 ARFSRFKNRETITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDE 127
Query: 123 AIEKMLNDLSLIKKFE 138
++++L+D+ + F+
Sbjct: 128 ELQQILDDIQTKRSFQ 143
>gi|327267294|ref|XP_003218437.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Anolis
carolinensis]
Length = 142
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 89/133 (66%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RF
Sbjct: 14 EEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARF 71
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE ++
Sbjct: 72 SRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FEDEELQ 128
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 129 QILDDIQTKRSFQ 141
>gi|348586101|ref|XP_003478808.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cavia
porcellus]
Length = 142
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 91/137 (66%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSGVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|310756790|gb|ADP20536.1| DNA-directed RNA polymerase II subunit RPB4 [Heterocephalus glaber]
gi|351703153|gb|EHB06072.1| DNA-directed RNA polymerase II subunit RPB4 [Heterocephalus glaber]
Length = 142
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 91/137 (66%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSGVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|260841580|ref|XP_002613990.1| hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae]
gi|229299380|gb|EEN69999.1| hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae]
Length = 142
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+AA+L+ EF A+ L+N EV ++L+H+ +Q + ++ ++S+VF K+L Y RF
Sbjct: 14 EEDAAQLQFPKEFENAETLLNSEVNMLLEHRKQQNESAEEE--QELSEVFMKTLGYTSRF 71
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR +L + +L +FEL L NLCPE+ EEA +++PS++ R +DE ++
Sbjct: 72 SRFKNRETIAAVRSLLMQKKLHKFELAALANLCPESAEEAKSLIPSLEGR---FEDEELQ 128
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 129 QILDDIQTKRSFQ 141
>gi|238231374|ref|NP_001154121.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Oncorhynchus
mykiss]
gi|225704188|gb|ACO07940.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Oncorhynchus
mykiss]
Length = 143
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 89/136 (65%), Gaps = 5/136 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
G EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 12 GGIEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYT 69
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
RFSR+KN + + VR +L + +L +FEL L NLCPE EEA A++PS++ R +DE
Sbjct: 70 ARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSVEGR---FEDE 126
Query: 123 AIEKMLNDLSLIKKFE 138
++++L+D+ + F+
Sbjct: 127 ELQQILDDIQTKRSFQ 142
>gi|197129913|gb|ACH46411.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 88/133 (66%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A++L EF A+ L+N EV ++L+H+ +Q + D ++S+VF K+L Y RF
Sbjct: 14 EEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDK--QELSEVFMKTLNYTARF 71
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE ++
Sbjct: 72 SRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FEDEELQ 128
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 129 QILDDIQTKRSFQ 141
>gi|291387945|ref|XP_002710495.1| PREDICTED: DNA directed RNA polymerase II polypeptide D
[Oryctolagus cuniculus]
Length = 142
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ +E+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVKEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLTY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|148233814|ref|NP_001087315.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus laevis]
gi|51873947|gb|AAH78547.1| MGC85403 protein [Xenopus laevis]
Length = 142
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 91/137 (66%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
SG+ EE+A++L EF A+ L+N EV ++L+H+ +Q + ++ ++S+VF K+L Y
Sbjct: 10 SGDAEEDASQLLFPKEFESAETLLNSEVHMLLEHRKQQNESAEEE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L FEL L NLCPET +EA A++PS++ R ++
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHRFELACLANLCPETADEAKALIPSLEGR---FEE 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|62858949|ref|NP_001016248.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
gi|189441952|gb|AAI67274.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
gi|189442580|gb|AAI67273.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
Length = 142
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 91/137 (66%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
SG+ EE+A++L EF A+ L+N EV ++L+H+ +Q + ++ ++S+VF K+L Y
Sbjct: 10 SGDPEEDASQLLFPKEFESAETLLNSEVHMLLEHRKQQNESAEEE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L FEL L NLCPET +EA A++PS++ R ++
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHRFELACLANLCPETADEAKALIPSLEGR---FEE 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>gi|156383638|ref|XP_001632940.1| predicted protein [Nematostella vectensis]
gi|156220003|gb|EDO40877.1| predicted protein [Nematostella vectensis]
Length = 138
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 77/111 (69%), Gaps = 2/111 (1%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE+A EL+ EF A+ L+N EV ++L+H+ + Q S + ++S+VF K+L Y ++
Sbjct: 9 DEEDATELQFPKEFESAESLLNSEVYMLLEHR--KTQNESAEEEQELSEVFMKTLGYTQK 66
Query: 65 FSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
FSRYKN + + QVR +L + +L +FEL L NLCPET EEA A++PS++ R
Sbjct: 67 FSRYKNRETIAQVRSLLGKKKLHKFELACLANLCPETAEEAKALIPSLEGR 117
>gi|432927321|ref|XP_004080968.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Oryzias latipes]
Length = 144
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 89/136 (65%), Gaps = 5/136 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
G+ EE+A++L EF ++ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 13 GDVEEDASQLLFPKEFENSETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYT 70
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
RFSR+KN + + VR +L + +L +FEL L NLCPE EEA A+ PS++ R +DE
Sbjct: 71 ARFSRFKNRETITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALTPSLEGR---FEDE 127
Query: 123 AIEKMLNDLSLIKKFE 138
++++L+D+ + F+
Sbjct: 128 ELQQILDDIQTKRSFQ 143
>gi|310756788|gb|ADP20535.1| DNA-directed RNA polymerase II subunit RPB4 [Fukomys anselli]
Length = 142
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 88/133 (66%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S VF K+L Y RF
Sbjct: 14 EEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSGVFMKTLNYTARF 71
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++
Sbjct: 72 SRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQ 128
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 129 QILDDIQTKRSFQ 141
>gi|197127797|gb|ACH44295.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 88/133 (66%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RF
Sbjct: 14 EEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARF 71
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR++ + + VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE ++
Sbjct: 72 SRFRGRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FEDEELQ 128
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 129 QILDDIQTKRSFQ 141
>gi|226372342|gb|ACO51796.1| DNA-directed RNA polymerase II subunit RPB4 [Rana catesbeiana]
Length = 142
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 88/133 (66%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A++L EF A+ L+N EV ++L+H+ +Q + ++ ++S+VF K+L Y RF
Sbjct: 14 EEDASQLLFPKEFESAETLLNSEVHMLLEHRKQQNESAEEE--QELSEVFMKTLNYTARF 71
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR +L + +L FEL L NLCPET +EA A++PS++ R +DE ++
Sbjct: 72 SRFKNRETIASVRSLLLQKKLHRFELACLANLCPETADEAKALIPSLEGR---FEDEELQ 128
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 129 QILDDIQTKRSFQ 141
>gi|449679512|ref|XP_004209350.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Hydra
magnipapillata]
Length = 143
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 88/134 (65%), Gaps = 5/134 (3%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A EL+ EF A+ L+N EV ++L+H+ Q + D+ ++S VF K+L Y +R
Sbjct: 14 EEEDATELQFPKEFESAETLLNSEVFMLLEHRKAQNESVDDE--QEMSDVFMKTLNYTQR 71
Query: 65 FSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
FSR+KN + + QVR +LS+ +L +FEL + NLCPE EEA ++PS++ R +E +
Sbjct: 72 FSRFKNRETIAQVRGLLSKKKLHKFELACIANLCPENAEEARTLIPSLEGR---FVEEEL 128
Query: 125 EKMLNDLSLIKKFE 138
+++L+++ + F+
Sbjct: 129 QQILDEIKTHRSFQ 142
>gi|225716192|gb|ACO13942.1| DNA-directed RNA polymerase II subunit RPB4 [Esox lucius]
Length = 143
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 89/136 (65%), Gaps = 5/136 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L
Sbjct: 12 GDVEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNCT 69
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
RFSR+KN + + VR +L + +L +FEL L NLCPE EEA A++PS++ R +DE
Sbjct: 70 ARFSRFKNRETIGSVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDE 126
Query: 123 AIEKMLNDLSLIKKFE 138
++++L+D+ + F+
Sbjct: 127 ELQQILDDIQTKRSFQ 142
>gi|126320933|ref|XP_001366024.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320939|ref|XP_001366209.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320945|ref|XP_001366315.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 87/137 (63%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G EE A++L EF A+ L+N EV ++L+H+ +Q + D ++ VF K+L Y
Sbjct: 10 AGHVEEEASQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQD--ARELPVVFWKTLDY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR++N + + +VR +L + +L +FEL L NLCPET EEA A++PS+ R +D
Sbjct: 68 AARFSRFQNRETIARVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGR---LED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EDLQEVLDDIQTKRSFQ 141
>gi|170583187|ref|XP_001896469.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Brugia malayi]
gi|158596317|gb|EDP34682.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative [Brugia
malayi]
Length = 138
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 88/133 (66%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
+E+A ELK EF +A L+ EV ++L+H+ +Q +Q + ++++S VF K+L Y +R
Sbjct: 11 DEDATELKFPKEFEQADTLLTSEVYLLLEHRRQQSEQKEE--IDEMSDVFVKTLNYTRRM 68
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
+R+KN + +R VR +L+ L +FE+ + NLCPET EEA A++PS++ + DDE ++
Sbjct: 69 ARFKNRETIRAVRTLLATKPLHKFEVAQIANLCPETSEEAKALIPSLE--NKMEDDE-LD 125
Query: 126 KMLNDLSLIKKFE 138
++L DL K F+
Sbjct: 126 EVLKDLHSKKTFQ 138
>gi|312080440|ref|XP_003142600.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307762235|gb|EFO21469.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
Length = 138
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 88/133 (66%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
+E+A ELK EF +A L+ EV ++L+H+ +Q +Q + ++++S VF K+L Y +R
Sbjct: 11 DEDATELKFPKEFEQADTLLTSEVYLLLEHRRQQSEQKEE--IDEMSDVFVKTLNYTRRM 68
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
+R+KN + +R VR +L+ L +FE+ + NLCPET EEA A++PS++ + DDE ++
Sbjct: 69 ARFKNRETIRAVRTLLATKPLHKFEVAQIANLCPETSEEAKALIPSLE--NKMEDDE-LD 125
Query: 126 KMLNDLSLIKKFE 138
++L DL K F+
Sbjct: 126 EVLKDLHSKKTFQ 138
>gi|387018222|gb|AFJ51229.1| DNA-directed RNA polymerase II subunit RPB4-like [Crotalus
adamanteus]
Length = 142
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 88/133 (66%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S++F K+L Y RF
Sbjct: 14 EEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESVEDE--QELSELFMKTLNYTGRF 71
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR +L + +L +FEL L NL PET EEA A++PS++ R +DE ++
Sbjct: 72 SRFKNRETIASVRSLLLQKKLHKFELACLANLGPETAEEAKALIPSLEGR---FEDEELQ 128
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 129 QILDDIQTKRSFQ 141
>gi|126320947|ref|XP_001366375.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320951|ref|XP_001366486.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320955|ref|XP_001366545.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320959|ref|XP_001366594.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 86/137 (62%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G EE A++L EF A+ L+N EV ++L+H+ +Q + D ++ VF K+L Y
Sbjct: 10 AGHVEEEASQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQD--ARELPVVFWKTLDY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR++N + + VR +L + +L +FEL L NLCPET EEA A++PS+ R +D
Sbjct: 68 AARFSRFQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGR---LED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EDLQEVLDDIQTKRSFQ 141
>gi|449272625|gb|EMC82454.1| DNA-directed RNA polymerase II subunit RPB4, partial [Columba
livia]
Length = 118
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 82/122 (67%), Gaps = 5/122 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RFSR+KN + +
Sbjct: 1 EFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARFSRFKNRETIAS 58
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKK 136
VR +L + +L +FEL L NLCPET EEA A+VPS++ R +DE ++++L+D+ +
Sbjct: 59 VRSLLLQKKLHKFELACLANLCPETAEEAKALVPSLEGR---FEDEELQQILDDIQTKRS 115
Query: 137 FE 138
F+
Sbjct: 116 FQ 117
>gi|449491225|ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Cucumis sativus]
Length = 220
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 5 EEENAAELKIGDEF---LKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+E A ELKI E +K +CLM+CE A +L +Q+ S DP ++ F++ LQY
Sbjct: 86 KEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQY 145
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
KR + Y N ++VR V E L +Y + + E+CV+ N+CP+T +E A++PS+K R R+
Sbjct: 146 AKRANHYVNAESVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLK-RKRSKLS 204
Query: 122 EAIEKMLNDLSLIK 135
E I +L++L+ +K
Sbjct: 205 EPINNVLSELAKVK 218
>gi|449434414|ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213971 [Cucumis sativus]
Length = 242
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 5 EEENAAELKIGDEF---LKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+E A ELKI E +K +CLM+CE A +L +Q+ S DP ++ F++ LQY
Sbjct: 86 KEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQY 145
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
KR + Y N ++VR V E L +Y + + E+CV+ N+CP+T +E A++PS+K R R+
Sbjct: 146 AKRANHYVNAESVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLK-RKRSKLS 204
Query: 122 EAIEKMLNDLSLIK 135
E I +L++L+ +K
Sbjct: 205 EPINNVLSELAKVK 218
>gi|405964873|gb|EKC30315.1| DNA-directed RNA polymerase II subunit RPB4 [Crassostrea gigas]
Length = 145
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 86/133 (64%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+AAEL+ EF A+ L+ EV ++L+H+ + Q S + ++S+VF K+L Y RF
Sbjct: 17 EEDAAELQFPKEFENAETLLISEVQMLLEHR--KTQNESAEEEQELSEVFMKTLNYTSRF 74
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
S++KN + + +R +L + +L +FEL L NLCP+ EEA +++PS++ R +DE ++
Sbjct: 75 SKFKNRETISAIRSVLMQKKLHKFELAALANLCPDNAEEAKSLIPSLEGR---FEDEELQ 131
Query: 126 KMLNDLSLIKKFE 138
++L D+ + F+
Sbjct: 132 QLLEDIKTKRSFQ 144
>gi|443714916|gb|ELU07114.1| hypothetical protein CAPTEDRAFT_220021 [Capitella teleta]
Length = 139
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+++EL EF A+ L+ EV ++L H+ +Q + D+ ++S+VF+K+L + +RF
Sbjct: 11 EEDSSELIFPKEFENAETLLISEVYMLLQHRAQQNENAEDE--QELSEVFKKTLTHTERF 68
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
++KN + + VR +L + +L +FEL L NLCPET EEA A++PS++ R +DEA++
Sbjct: 69 KKFKNRETIASVRSLLMQKKLHKFELAALANLCPETAEEAKALIPSLEGR---FEDEALQ 125
Query: 126 KMLNDL 131
++L+D+
Sbjct: 126 QILDDI 131
>gi|126320949|ref|XP_001366431.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 86/137 (62%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G EE A++L EF A+ L+N EV ++L+H+ +Q + D ++ VF K+L Y
Sbjct: 10 AGHVEEEASQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQD--ARELPVVFWKTLDY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR++N + + VR +L + +L +FE+ L NLCPET EEA A++PS+ R +D
Sbjct: 68 AARFSRFQNRETIASVRGLLLQKKLHKFEVAALANLCPETAEEAKALIPSLAGR---LED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EDLQEVLDDIQTKRSFQ 141
>gi|226372134|gb|ACO51692.1| DNA-directed RNA polymerase II subunit RPB4 [Rana catesbeiana]
Length = 142
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 87/133 (65%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A++L EF A+ L+N EV ++L+H+ +Q + ++ ++S+VF K+L Y RF
Sbjct: 14 EEDASQLLFPKEFESAETLLNPEVHMLLEHRKQQNESAEEE--QELSEVFMKTLNYTARF 71
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR +L + +L FEL L NLCP T +EA A++PS++ R +DE ++
Sbjct: 72 SRFKNRETIASVRSLLLQKKLHRFELACLANLCPGTADEAKALIPSLEGR---FEDEELQ 128
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 129 QILDDIQTKRSFQ 141
>gi|281202108|gb|EFA76313.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 747
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 87/134 (64%), Gaps = 6/134 (4%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
+EEE+ + LK + AK L+N EVAI+L+ + E + ++ P Q F K+L Y +
Sbjct: 619 QEEEDLSLLKFPKDLKNAKFLLNSEVAILLECRKEFATEGTEFP-----QTFHKTLAYAE 673
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
RFSRYKN +++QVR +LS+ L EFE+ L NLCPE +EA +++ S+K R + D+
Sbjct: 674 RFSRYKNKASIKQVRGVLSKQDLDEFEVACLANLCPENSDEAKSLIVSLK-RFQDTQDDT 732
Query: 124 IEKMLNDLSLIKKF 137
++ +L++LS ++KF
Sbjct: 733 LQAILDELSNLRKF 746
>gi|346469951|gb|AEO34820.1| hypothetical protein [Amblyomma maculatum]
Length = 144
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A+EL+ EF A+ L+ EV ++L+H+ +Q + ++ ++S+VF K+L Y +RF
Sbjct: 16 EEDASELQFPKEFENAETLLISEVHMLLEHRKQQNESAEEE--QELSEVFMKTLGYCQRF 73
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR++L++ +L FEL L NLCP+ EEA A+VPS++ GR DD+ +
Sbjct: 74 SRFKNRETISAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLE--GRFEDDQ-LR 130
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 131 QILDDIQTQRSFQ 143
>gi|346469949|gb|AEO34819.1| hypothetical protein [Amblyomma maculatum]
Length = 144
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A+EL+ EF A+ L+ EV ++L+H+ +Q + ++ ++S+VF K+L Y +RF
Sbjct: 16 EEDASELQFPKEFENAETLLISEVHMLLEHRKQQNESAEEE--QELSEVFMKTLGYCQRF 73
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR++L++ +L FEL L NLCP+ EEA A+VPS++ GR DD+ +
Sbjct: 74 SRFKNRETISAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLE--GRFEDDQ-LR 130
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 131 QILDDIQTQRSFQ 143
>gi|427786429|gb|JAA58666.1| Putative dna-directed rna polymerase ii [Rhipicephalus pulchellus]
Length = 144
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A+EL+ EF A+ L+ EV ++L+H+ +Q + ++ ++S+VF K+L Y +RF
Sbjct: 16 EEDASELQFPKEFENAETLLISEVHMLLEHRKQQNESAEEE--QELSEVFMKTLGYCQRF 73
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR++L++ +L FEL L NLCP+ EEA A+VPS++ GR DD+ +
Sbjct: 74 SRFKNRETITAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLE--GRFEDDQ-LR 130
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 131 QILDDIQTQRSFQ 143
>gi|355712725|gb|AES04445.1| polymerase II polypeptide D [Mustela putorius furo]
Length = 117
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 82/122 (67%), Gaps = 5/122 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RFSR+KN + +
Sbjct: 1 EFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARFSRFKNRETIAS 58
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKK 136
VR +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+ +
Sbjct: 59 VRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRS 115
Query: 137 FE 138
F+
Sbjct: 116 FQ 117
>gi|354497575|ref|XP_003510895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cricetulus griseus]
Length = 158
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 84/127 (66%), Gaps = 5/127 (3%)
Query: 12 LKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNP 71
L + EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RFSR+KN
Sbjct: 36 LALLAEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARFSRFKNR 93
Query: 72 DAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
+ + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 94 ETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDI 150
Query: 132 SLIKKFE 138
+ F+
Sbjct: 151 QTKRSFQ 157
>gi|225468957|ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis
vinifera]
gi|359495604|ref|XP_003635035.1| PREDICTED: uncharacterized protein LOC100246461 isoform 2 [Vitis
vinifera]
gi|297736694|emb|CBI25730.3| unnamed protein product [Vitis vinifera]
Length = 239
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 11 ELKIGDEFLK-AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYK 69
EL+I E K AKC+M+CE A+IL EQ+ S+DP ++ F K LQY + + Y
Sbjct: 100 ELRIEQELPKNAKCMMDCEAALILKGIQEQMVVLSEDPTIKIPLSFNKGLQYAQSSNCYA 159
Query: 70 NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
+P +VR V E LS+Y +++ E+CV+ N CPET++E A+VPS+K +
Sbjct: 160 SPQSVRLVLEPLSKYGVSDGEICVIANTCPETIDEVFALVPSLKPK 205
>gi|126320943|ref|XP_001366258.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 84/137 (61%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G EE A +L EF A+ L+N EV ++L+H+ +Q + D + VF K+L Y
Sbjct: 10 AGHVEEEALQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQD--ARGLPVVFWKTLDY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR++N + + VR +L + +L +FEL L NLCPET EEA A++PS+ R +D
Sbjct: 68 AARFSRFQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGR---LED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EDLQEVLDDIQTKRSFQ 141
>gi|66812112|ref|XP_640235.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum
AX4]
gi|74854885|sp|Q54S04.1|RPB4_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|60468219|gb|EAL66229.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum
AX4]
Length = 155
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 89/147 (60%), Gaps = 17/147 (11%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHK----------YEQ---LQQTSDDPMNQ 50
+EEE+ LK + AK L+N EVAI+L+H+ + Q L + +N
Sbjct: 12 QEEEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSIND 71
Query: 51 VSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVP 110
+ + F K+L Y ++FSRYKN +++QVR LS+ L EFE+ L NLCPE +EA +++P
Sbjct: 72 IIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIP 131
Query: 111 SIKTRGRAHDDEAIEKMLNDLSLIKKF 137
S+K + DDE ++ +L++LS ++KF
Sbjct: 132 SLK---KMEDDE-LQAILDELSNLRKF 154
>gi|328873268|gb|EGG21635.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium
fasciculatum]
Length = 138
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 12/136 (8%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILD--HKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+EEE+ L+ + +AK L+N EVAI L+ ++E QT + Q F K+L Y
Sbjct: 12 QEEEDLVTLQFPKDLQQAKFLLNSEVAIFLECRKEFESENQT------EFPQTFHKTLAY 65
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
+RFSRYKN +++QVR LS+ L EFE+ L NLCPE +EA +++ S+K DD
Sbjct: 66 AERFSRYKNKTSIKQVRAALSKQNLHEFEIASLANLCPENSDEAKSLIVSLKR----FDD 121
Query: 122 EAIEKMLNDLSLIKKF 137
+ I+ +L++LS ++KF
Sbjct: 122 DTIQAILDELSNLRKF 137
>gi|126320937|ref|XP_001366148.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 85/137 (62%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G E A++L EF A+ L+N EV ++L+H+ +Q + D ++ VF K+L Y
Sbjct: 10 AGHVEGEASQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQD--ARELPVVFWKTLDY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR++N + + VR +L + +L +FEL L NLCPET EEA A++PS+ R +D
Sbjct: 68 AARFSRFQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGR---LED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EDLQEVLDDIQTKRSFQ 141
>gi|321476639|gb|EFX87599.1| hypothetical protein DAPPUDRAFT_306425 [Daphnia pulex]
Length = 137
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 87/133 (65%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
+E+AA L+ EF A+ L+ EV ++LDH+ +LQ S + ++S+VF K+L Y +RF
Sbjct: 9 DEDAAVLQFPKEFENAETLLISEVHMLLDHR--KLQNESAEDEQELSEVFMKTLNYTQRF 66
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
S++KN + + +R +L + +L +FEL L NLCPE+ EEA +++PS++ R +DE +
Sbjct: 67 SKFKNRETIAAIRSLLMQKKLHKFELAALANLCPESPEEAKSLIPSLEGR---FEDEELR 123
Query: 126 KMLNDLSLIKKFE 138
++L D+ + F+
Sbjct: 124 QILEDIQTKRSFQ 136
>gi|126320935|ref|XP_001366087.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 85/137 (62%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G EE A++L EF A+ L+N EV ++L+H+ +Q + D ++ VF K+L Y
Sbjct: 10 AGHVEEEASQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQD--ARELPVVFWKTLDY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR++N + + VR +L + +L +F L L NLCPET EEA A++PS+ R +D
Sbjct: 68 AARFSRFQNRETIASVRGLLLQKKLHKFVLAALANLCPETAEEAKALIPSLAGR---LED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EDLQEVLDDIQTKRSFQ 141
>gi|193204561|ref|NP_495544.2| Protein RPB-4 [Caenorhabditis elegans]
gi|351021285|emb|CCD63552.1| Protein RPB-4 [Caenorhabditis elegans]
Length = 144
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 85/138 (61%), Gaps = 7/138 (5%)
Query: 3 GEEEENAAELKIGDEFLKAKC--LMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
G+ EE+AAE K EF C L+ EV ++L+H+ + + S D + ++S+VF K+L
Sbjct: 12 GQVEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSSE--SKDEIEEMSEVFIKTLN 69
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
Y +R SR+KN + +R VR I S L +FE+ + NLCPE EEA A+VPS++ + +
Sbjct: 70 YARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKI---E 126
Query: 121 DEAIEKMLNDLSLIKKFE 138
+ +E++L DL + F+
Sbjct: 127 ESELEEVLKDLQSKRTFQ 144
>gi|308503128|ref|XP_003113748.1| CRE-RPB-4 protein [Caenorhabditis remanei]
gi|308263707|gb|EFP07660.1| CRE-RPB-4 protein [Caenorhabditis remanei]
Length = 144
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 84/138 (60%), Gaps = 7/138 (5%)
Query: 3 GEEEENAAELKIGDEFLKAKC--LMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
G+ EE+AAE K EF C L+ EV ++L+H+ + S D + ++S+VF K+L
Sbjct: 12 GQVEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQS--NESKDEIEEMSEVFIKTLN 69
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
Y +R SR+KN + +R VR I S L +FE+ + NLCPE EEA A+VPS++ + +
Sbjct: 70 YARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKI---E 126
Query: 121 DEAIEKMLNDLSLIKKFE 138
+ +E++L DL + F+
Sbjct: 127 ESELEEVLKDLQSKRTFQ 144
>gi|116488104|gb|ABJ98634.1| RNA polymerase II subunit D [Scophthalmus maximus]
Length = 129
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A++L EF ++ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RF
Sbjct: 16 EEDASQLLFPKEFENSETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARF 73
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
SR+KN + + VR +L + +L +FEL + NLCPE EEA A+ PS++ GR D+E
Sbjct: 74 SRFKNRETITAVRSLLLQKKLHKFELASMANLCPEAAEEAKALTPSLE--GRFEDEE 128
>gi|91082085|ref|XP_966894.1| PREDICTED: similar to DNA-directed RNA polymerase II 16 kDa
polypeptide [Tribolium castaneum]
gi|270008323|gb|EFA04771.1| hypothetical protein TcasGA2_TC030678 [Tribolium castaneum]
Length = 138
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 81/126 (64%), Gaps = 5/126 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+AA+L+ EF A+ L+ EV ++L+H+ Q + D+ + S VF K+L Y RF
Sbjct: 10 EEDAADLQFPKEFENAETLLISEVHMLLEHRKAQNESAEDE--QEFSDVFMKTLTYTDRF 67
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
++KN + + VR +L + +L +FEL + NLCPET EEA +++PS++ R +DE ++
Sbjct: 68 RKFKNKETISAVRNLLMQKKLHKFELAAIANLCPETTEEAKSLIPSLEGR---FEDEELQ 124
Query: 126 KMLNDL 131
+L+D+
Sbjct: 125 AVLDDI 130
>gi|47216495|emb|CAG02146.1| unnamed protein product [Tetraodon nigroviridis]
Length = 145
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 72/108 (66%), Gaps = 2/108 (1%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 11 GDVEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYT 68
Query: 63 KRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVP 110
RFSR+KN + + VR +L + +L +FEL L NLCPE EEA A++P
Sbjct: 69 ARFSRFKNRETITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIP 116
>gi|358055256|dbj|GAA98764.1| hypothetical protein E5Q_05452 [Mixia osmundae IAM 14324]
Length = 477
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 9/135 (6%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
EE E+ A+LK+G EF KA CLM EV +++D++ E ++ S +P Q++ V +K +YV+
Sbjct: 13 EEGEDVAQLKLGKEFEKASCLMINEVKMLIDNQGEDAKRVSREP-GQLN-VTKKMWEYVE 70
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRG------- 116
RFS P + ++R L R LA+FE C L NL P+TVEEA A++PSI+
Sbjct: 71 RFSPGLEPSDIARLRSALLRESLADFEACSLANLRPKTVEEAKAILPSIQREAVRDGEPP 130
Query: 117 RAHDDEAIEKMLNDL 131
DD+ I+ +L+ L
Sbjct: 131 VQRDDDGIQAILDLL 145
>gi|255568114|ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
gi|223535695|gb|EEF37360.1| conserved hypothetical protein [Ricinus communis]
Length = 203
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 1 MSGEEEENAAELKIGDEFLK-AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSL 59
+S +E ELKI + K AKCLM+CE A +L EQ+ S DP ++ F+++L
Sbjct: 66 ISSTKEPQPLELKIEQDLPKNAKCLMDCEAAQVLQGIQEQMVLLSRDPTIKLPVSFDRAL 125
Query: 60 QYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
Q+ + +R+ NP +VR++ E L ++ ++E E+C + N+CP+ V+E A+VPS+K++
Sbjct: 126 QHARTGARFTNPQSVRRILEGLKKHGVSEGEICTIANVCPDGVDEVFALVPSLKSK 181
>gi|302687374|ref|XP_003033367.1| hypothetical protein SCHCODRAFT_54491 [Schizophyllum commune H4-8]
gi|300107061|gb|EFI98464.1| hypothetical protein SCHCODRAFT_54491 [Schizophyllum commune H4-8]
Length = 135
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 85/135 (62%), Gaps = 13/135 (9%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A LK+G EF +A CL+ EV +L+++ ++T+ D + V+ K+L YVK
Sbjct: 12 EEEDATTLKLGPEFAQAGCLLISEVKYLLENR----EKTAPD-----NAVYAKTLDYVKT 62
Query: 65 FSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+++ D+ VREIL R QL +FE L NLCP EEA +++PS++ + DD+
Sbjct: 63 FAKWHTTDSASAVREILRREPQLTQFETAQLANLCPAEAEEAKSIIPSLEDKV---DDDR 119
Query: 124 IEKMLNDLSLIKKFE 138
++ +LN++ ++KF+
Sbjct: 120 LQALLNEIQTMRKFQ 134
>gi|328772120|gb|EGF82159.1| hypothetical protein BATDEDRAFT_86911 [Batrachochytrium
dendrobatidis JAM81]
Length = 138
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 6/134 (4%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A K G EF +CL+ EV ++L+ ++ ++ S D +S + +K++ Y ++
Sbjct: 11 EEEDANLSKFGPEFQDVQCLLISEVRVLLEVAKDRKRKESGD--GSISDIMQKTIDYCQQ 68
Query: 65 FSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
FSR+ N V+++R + Q +FE+ L NLC ET EEA ++PS+ T+ HDDE +
Sbjct: 69 FSRFTNKQTVKEIRNLFPDDQFHQFEMAQLANLCCETAEEAKVLIPSLSTK---HDDE-L 124
Query: 125 EKMLNDLSLIKKFE 138
+ +LNDL ++KF+
Sbjct: 125 QNLLNDLQALRKFQ 138
>gi|268562714|ref|XP_002646754.1| C. briggsae CBR-RPB-4 protein [Caenorhabditis briggsae]
Length = 148
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 86/138 (62%), Gaps = 7/138 (5%)
Query: 3 GEEEENAAELKIGDEFLKAKC--LMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
G+ EE+AAE K EF C L+ EV ++L+H+ Q +T D+ + ++S+VF K+L
Sbjct: 16 GQVEEDAAECKFPKEFELNTCDALLTAEVYLLLEHR-RQSNETKDE-IEEMSEVFIKTLN 73
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
Y +R SR+KN + +R VR I S L +FE+ + NLCPE EEA A+VPS++ + +
Sbjct: 74 YARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKI---E 130
Query: 121 DEAIEKMLNDLSLIKKFE 138
+ +E++L DL + F+
Sbjct: 131 ESELEEVLKDLQSKRTFQ 148
>gi|390178627|ref|XP_003736694.1| GA30251 [Drosophila pseudoobscura pseudoobscura]
gi|388859523|gb|EIM52767.1| GA30251 [Drosophila pseudoobscura pseudoobscura]
Length = 139
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 80/127 (62%), Gaps = 5/127 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
+E+AA+L+ EF A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F
Sbjct: 11 DEDAADLQFPKEFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
++KN + + VR +L + +L +FEL LGNLCPE EEA A++PS++ R +DE +
Sbjct: 69 RKFKNKETIMSVRSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELR 125
Query: 126 KMLNDLS 132
++L+D+
Sbjct: 126 QILDDIG 132
>gi|145350124|ref|XP_001419467.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357498|ref|XP_001422955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579699|gb|ABO97760.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583199|gb|ABP01314.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 147
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 80/137 (58%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
S E+ E+A EL++G +F A CL EV I+ + K + +++ ++VFEK+L Y
Sbjct: 11 SAEDVEDAGELRLGPDFDDANCLSLAEVKIVCESKVADDAEQAEETSTTRTRVFEKTLAY 70
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
KRFS + A +RE+ + L +FE + NL P+ +EA +VPS++ R +
Sbjct: 71 AKRFSGNTSSTAAAAIRELHNNSGLHDFEGAAISNLKPQDWDEAKTLVPSLEQEDRGLTE 130
Query: 122 EAIEKMLNDLSLIKKFE 138
E I+ ML+++S ++KFE
Sbjct: 131 EGIQAMLDEMSNVRKFE 147
>gi|412990641|emb|CCO18013.1| predicted protein [Bathycoccus prasinos]
Length = 146
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 89/138 (64%), Gaps = 2/138 (1%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
S E+E+A ELK+G +F A+CL EV ++++ ++D + +QVFEK+L+Y
Sbjct: 10 SQTEDEDAQELKLGPDFSDAQCLSISEVRLVMEAMIYDYNNRNEDASSTNTQVFEKTLKY 69
Query: 62 VKRFSRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
V+RF + +AV+ +R++L++ L FE V+ NL P +EA +VPS++ GRA
Sbjct: 70 VQRFGGNVSQEAVQLIRDMLTKQNGLHTFEAAVVSNLRPVDYDEAKTLVPSLEAEGRAS- 128
Query: 121 DEAIEKMLNDLSLIKKFE 138
+E I++ML++++ +++FE
Sbjct: 129 EEQIQRMLDEMANVRRFE 146
>gi|225713530|gb|ACO12611.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
gi|290462181|gb|ADD24138.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
gi|290562964|gb|ADD38876.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
Length = 139
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 87/135 (64%), Gaps = 7/135 (5%)
Query: 6 EENAAELKIGDEF--LKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
EE+A++L+ EF + K L+ EV I+L+H+ Q Q + + + S+VF K+L Y +
Sbjct: 9 EEDASDLQFPTEFEDPETKTLLISEVHILLEHR--QKQNDAAEEEQEFSEVFMKTLNYTQ 66
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
RF++++N D + +R +L++ +L +FEL L NLCP++ EEA +++PS++ R DDE
Sbjct: 67 RFAKFRNLDNIASIRSVLTQKKLHKFELAALANLCPDSPEEARSLIPSLEGR---FDDEE 123
Query: 124 IEKMLNDLSLIKKFE 138
+ +L+D+ + F+
Sbjct: 124 LSVLLDDIQTKRSFQ 138
>gi|27263229|gb|AAN88031.1| RNA polymerase II accessory factor rpb4 [Drosophila melanogaster]
gi|27263231|gb|AAN88032.1| RNA polymerase II accessory factor rpb4 [Drosophila melanogaster]
Length = 139
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 80/127 (62%), Gaps = 5/127 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
+E+AA+L+ EF A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F
Sbjct: 11 DEDAADLQFPKEFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
++KN + + R +L + +L +FEL LGNLCPE EEA A++PS++ GR D+EA E
Sbjct: 69 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE--GRFEDEEARE 126
Query: 126 KMLNDLS 132
+L+D+
Sbjct: 127 -ILDDIG 132
>gi|328855128|gb|EGG04256.1| hypothetical protein MELLADRAFT_89474 [Melampsora larici-populina
98AG31]
Length = 130
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 87/135 (64%), Gaps = 15/135 (11%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE+A++LK+G EF A CL EV ++L+ + D P + + V++K+ ++V +
Sbjct: 9 QEEDASQLKLGPEFDAAGCLSISEVKLLLEQR--------DKPAD--TAVYKKTQEFVNQ 58
Query: 65 FSRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+ D+ + R+ILS+ Q L FEL L +LCPE EEA +++PS+ A DD+A
Sbjct: 59 FARFSTTDSAQAARQILSKDQTLKPFELAQLASLCPEEAEEAKSLIPSLA----AKDDDA 114
Query: 124 IEKMLNDLSLIKKFE 138
++ +LN++S +K+++
Sbjct: 115 LQAILNEISGLKRYQ 129
>gi|7503310|pir||T34046 hypothetical protein F43E2.1 - Caenorhabditis elegans
Length = 580
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 4/115 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKC--LMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
G+ EE+AAE K EF C L+ EV ++L+H+ + + S D + ++S+VF K+L
Sbjct: 12 GQVEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSSE--SKDEIEEMSEVFIKTLN 69
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
Y +R SR+KN + +R VR I S L +FE+ + NLCPE EEA A+VPS++ +
Sbjct: 70 YARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENK 124
>gi|241727036|ref|XP_002413767.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|215507583|gb|EEC17075.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|442756991|gb|JAA70654.1| Putative dna-directed rna polymerase ii [Ixodes ricinus]
Length = 144
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 87/133 (65%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A+ ++ EF A+CL+ EV ++L+H+ +Q + ++ ++S+VF K+L Y +RF
Sbjct: 16 EEDASAMQFPKEFENAECLLISEVNMLLEHRKQQNESAEEE--QELSEVFMKTLSYCQRF 73
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
SR+KN + + VR +L + +L +FE L NLCP+ EEA A++PS++ G DD+ +
Sbjct: 74 SRFKNRETITAVRNLLKQKKLHKFEAAQLANLCPDNPEEAKALIPSLE--GMFEDDD-LR 130
Query: 126 KMLNDLSLIKKFE 138
++L+D+ + F+
Sbjct: 131 QILDDIQTQRSFQ 143
>gi|391330614|ref|XP_003739752.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Metaseiulus occidentalis]
Length = 144
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 85/133 (63%), Gaps = 5/133 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A EL +F A+ L+ EV ++L+H+ +Q + ++ ++S+ F K+ Y RF
Sbjct: 16 EEDACELSFPKDFENAETLLISEVHMLLEHRSKQNESAEEE--QELSEFFTKTHGYCTRF 73
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
S++KN + + +VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE +
Sbjct: 74 SKFKNRETIGEVRNLLQQKKLHKFELAQLANLCPETPEEAKALIPSLEGR---FEDEDLR 130
Query: 126 KMLNDLSLIKKFE 138
++L+D+ K F+
Sbjct: 131 EVLDDIQTQKSFQ 143
>gi|281362019|ref|NP_001014633.2| Rpb4 [Drosophila melanogaster]
gi|143459115|sp|Q9VEA5.5|RPB4_DROME RecName: Full=DNA-directed RNA polymerase II 16 kDa polypeptide;
AltName: Full=RNA polymerase II accessory factor rpb4
gi|66571194|gb|AAY51562.1| IP01323p [Drosophila melanogaster]
gi|66772825|gb|AAY55724.1| IP02337p [Drosophila melanogaster]
gi|66772827|gb|AAY55725.1| IP02340p [Drosophila melanogaster]
gi|220943406|gb|ACL84246.1| Rpb4-PF [synthetic construct]
gi|220955702|gb|ACL90394.1| Rpb4-PF [synthetic construct]
gi|272477037|gb|AAF55522.5| Rpb4 [Drosophila melanogaster]
Length = 139
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
+E+AA+L+ EF A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F
Sbjct: 11 DEDAADLQFPKEFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
++KN + + R +L + +L +FEL LGNLCPE EEA A++PS++ R +DE +
Sbjct: 69 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELR 125
Query: 126 KMLNDLS 132
++L+D+
Sbjct: 126 QILDDIG 132
>gi|452825468|gb|EME32464.1| DNA-directed RNA polymerase II subunit D [Galdieria sulphuraria]
Length = 150
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 6/131 (4%)
Query: 5 EEENAAELKIGDEFL--KAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
E+E+AA L++G++F KA+ L EVAI+L K + ++ + S VF+K L+YV
Sbjct: 19 EQEDAATLQLGEDFSSEKAQPLTISEVAILLSRKRDMMRDLEGPRAEEFSSVFKKFLEYV 78
Query: 63 KRFSRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
+RF RYK ++ VR +L RY+ L FE+ L NLCP EEA +PS+K + DD
Sbjct: 79 ERFDRYKGLESATNVRNLLQRYESLDPFEMACLANLCPADAEEAKTTIPSLKHK---IDD 135
Query: 122 EAIEKMLNDLS 132
++ ++L DL+
Sbjct: 136 SSLNQLLQDLA 146
>gi|393233961|gb|EJD41528.1| hypothetical protein AURDEDRAFT_115438 [Auricularia delicata
TFB-10046 SS5]
Length = 135
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+AA LK+G EF A CL+ EV ++LDH+ + T+ V+ K+L+YVK
Sbjct: 13 EEEDAASLKLGAEFNNAGCLLISEVKLLLDHRRDNAPDTA---------VYNKTLEYVKT 63
Query: 65 FSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+++ ++ VRE L R QL +FE L NL P V+EA ++VPS+ DD+
Sbjct: 64 FAKFSTAESASAVRETLRREPQLTQFETAQLANLVPADVDEAKSIVPSLV----KIDDDR 119
Query: 124 IEKMLNDLSLIKKFE 138
++ +L+++ ++KF+
Sbjct: 120 LQSLLDEVQTLRKFQ 134
>gi|341899791|gb|EGT55726.1| hypothetical protein CAEBREN_32834 [Caenorhabditis brenneri]
Length = 144
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 3 GEEEENAAELKIGDEFLKAKC--LMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
G EE+AAE K EF C L+ EV ++L+H+ + + + D + ++S+VF K+L
Sbjct: 12 GHVEEDAAECKFPKEFETNTCDALLTAEVYLLLEHRRQSSE--NKDEIEEMSEVFIKTLN 69
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSI 112
Y +R SR+KN + +R VR I S L +FE+ + NLCPE EEA A+VPS+
Sbjct: 70 YARRMSRFKNRETIRAVRAIFSEKHLHKFEIAQIANLCPENAEEAKALVPSL 121
>gi|72150941|ref|XP_795859.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Strongylocentrotus purpuratus]
Length = 142
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 83/128 (64%), Gaps = 6/128 (4%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
E+EE+A+ELK F +A+ L+ EV ++L H+ + Q S + ++S+VF K+L Y
Sbjct: 10 EQEEDASELKFPKVFEQAETLLISEVQMLLQHR--KQQNESQEEEQELSEVFMKTLNYTG 67
Query: 64 RFSRYKNPDAVRQVREILSRYQ--LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + Q L +FEL +L NLCPET EEA A++PS++ GR DD
Sbjct: 68 RFSRFKNRETIGDVRGLLQQQQPKLHKFELALLANLCPETAEEAKALIPSLE--GRFEDD 125
Query: 122 EAIEKMLN 129
E E + N
Sbjct: 126 ELTEVLEN 133
>gi|331212571|ref|XP_003307555.1| DNA-directed RNA polymerase II subunit D [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309297958|gb|EFP74549.1| DNA-directed RNA polymerase II subunit D [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 130
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 88/135 (65%), Gaps = 15/135 (11%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE+A++LK+G EF A CL EV ++L E ++ +D + V++K+ +YV +
Sbjct: 9 QEEDASQLKLGQEFDMAGCLSISEVKLLL----ETGEKRAD------TAVYKKTHEYVNQ 58
Query: 65 FSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+ + D+ + R+ILS+ L +FEL L +LCPE EEA +++PSI + DD+A
Sbjct: 59 FARFNSTDSAQAARQILSKDTTLKQFELAQLASLCPEEAEEAKSLIPSIAGK----DDDA 114
Query: 124 IEKMLNDLSLIKKFE 138
++ +LN++S +K+++
Sbjct: 115 LQALLNEISGLKRYQ 129
>gi|357619360|gb|EHJ71970.1| putative histone acetyltransferase [Danaus plexippus]
Length = 138
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+AA+L+ EF A+ L+ EV ++L+H+ + Q S + + S+VF K+L Y F
Sbjct: 10 EEDAADLQFPKEFENAETLLISEVDMLLEHR--KAQNESAEEEQEFSEVFMKTLTYTNMF 67
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
++KN + + VR +L +L +FE+ L NLCPET EEA A++PS++ R +DE +
Sbjct: 68 KKFKNKETITAVRNLLQSKKLHKFEVASLANLCPETPEEAKALIPSLEGR---FEDEELR 124
Query: 126 KMLNDL 131
+L+D+
Sbjct: 125 ILLDDI 130
>gi|395331653|gb|EJF64033.1| RNA polymerase II [Dichomitus squalens LYAD-421 SS1]
Length = 134
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 84/135 (62%), Gaps = 12/135 (8%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A+ L++G EF A CL+ EV +L+H+ ++ + D + V+ K+L+YVK
Sbjct: 10 EEEDASALRLGPEFNNAGCLLISEVRYLLEHRPS--EKAAPD-----TAVYNKTLEYVKT 62
Query: 65 FSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+++ P+A +RE L R L +FE+ + NLCP T EEA ++VPS+ DD+
Sbjct: 63 FAKFDKPEAAAAIRETLRRESALTQFEIAQIANLCPVTAEEAKSIVPSLVK----IDDDK 118
Query: 124 IEKMLNDLSLIKKFE 138
++ +L+++ ++KF+
Sbjct: 119 LQPLLDEIQTMRKFQ 133
>gi|224124738|ref|XP_002329936.1| predicted protein [Populus trichocarpa]
gi|222871958|gb|EEF09089.1| predicted protein [Populus trichocarpa]
Length = 197
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 5 EEENAAELKIGDEFLK-AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
+E ELKI E + AK LM+CE A IL +Q+ S DP ++ F+K LQY K
Sbjct: 64 KEPPPLELKIESELPQNAKPLMDCEAAQILQGIQDQMVLLSQDPTIKLPVSFDKGLQYAK 123
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
+ Y NP +VR+V E L +Y +++ E+ ++ N+ PET +EA A+VPS+K++ E
Sbjct: 124 NGAHYTNPQSVRRVLEALRKYGVSDGEISLIANVFPETADEAFALVPSLKSKASTL-REP 182
Query: 124 IEKMLNDLSLIKK 136
++ +L +L+ K+
Sbjct: 183 LKDILGELAKFKQ 195
>gi|353242845|emb|CCA74453.1| hypothetical protein PIIN_08406 [Piriformospora indica DSM 11827]
Length = 135
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 13/135 (9%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+AA LK+G EF A CL+ EV I+L K + + D P VF K+++YV
Sbjct: 12 EEEDAATLKLGAEFNNAGCLLISEVKILLKEK--EGKPGVDSP------VFNKTVEYVNM 63
Query: 65 FSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
FS++ D + VR L R L +FE L NLCP T EEA +++PS+ +DD+
Sbjct: 64 FSKFSTEDTIGLVRATLRRQANLTQFETAQLANLCPSTAEEAKSIIPSLA----KYDDDE 119
Query: 124 IEKMLNDLSLIKKFE 138
++ +L++L +++F+
Sbjct: 120 LQPLLDELQSMRRFQ 134
>gi|389609397|dbj|BAM18310.1| histone acetyltransferase rpb4 [Papilio xuthus]
Length = 151
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+AA+L+ EF A+ L+ EV ++L+H+ + Q S + + S+VF K+L Y F
Sbjct: 10 EEDAADLQFPKEFENAETLLISEVDMLLEHR--KAQNESAEEEQEFSEVFMKTLTYTNMF 67
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
++KN + + VR +L +L +FE+ L NLCPET EEA A++PS++ R +DE +
Sbjct: 68 KKFKNKETIAAVRNLLQSKKLHKFEVASLANLCPETPEEAKALIPSLEGR---FEDEELR 124
Query: 126 KMLNDL 131
+L+D+
Sbjct: 125 ILLDDI 130
>gi|215769042|dbj|BAH01271.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 239
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 80/127 (62%), Gaps = 2/127 (1%)
Query: 10 AELKIGDEFLKAKC-LMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRY 68
AELK+ + C LMNCEVA +L +E + S+DP ++ + F+K+ QYVK +++
Sbjct: 111 AELKLELDMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQF 170
Query: 69 KNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKML 128
+V+QV + L +Y +++ E+C++ N+ PET+EE A+VPS+K R+ ++ I + L
Sbjct: 171 STAQSVKQVLDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKAT-RSLNESPIMEAL 229
Query: 129 NDLSLIK 135
L+ IK
Sbjct: 230 TALADIK 236
>gi|218191483|gb|EEC73910.1| hypothetical protein OsI_08747 [Oryza sativa Indica Group]
gi|222623580|gb|EEE57712.1| hypothetical protein OsJ_08195 [Oryza sativa Japonica Group]
Length = 231
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 80/127 (62%), Gaps = 2/127 (1%)
Query: 10 AELKIGDEFLKAKC-LMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRY 68
AELK+ + C LMNCEVA +L +E + S+DP ++ + F+K+ QYVK +++
Sbjct: 103 AELKLELDMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQF 162
Query: 69 KNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKML 128
+V+QV + L +Y +++ E+C++ N+ PET+EE A+VPS+K R+ ++ I + L
Sbjct: 163 STAQSVKQVLDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKAT-RSLNESPIMEAL 221
Query: 129 NDLSLIK 135
L+ IK
Sbjct: 222 TALADIK 228
>gi|392565043|gb|EIW58220.1| RNA polymerase II [Trametes versicolor FP-101664 SS1]
Length = 134
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 85/137 (62%), Gaps = 12/137 (8%)
Query: 3 GEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
E+E+A+ L++G EF A CL+ EV +L+H+ + + + D + V++K+L+YV
Sbjct: 8 AHEDEDASSLRLGPEFNNAGCLLISEVRYLLEHRPSE--KAAPD-----TSVYKKTLEYV 60
Query: 63 KRFSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
K F+++ P+A +RE L R L +FE+ + NLCP T EE+ +++PS+ DD
Sbjct: 61 KTFAKFDKPEAAAAIRETLRRESDLTQFEIAQIANLCPVTAEESKSIIPSLVKV----DD 116
Query: 122 EAIEKMLNDLSLIKKFE 138
+ ++ +L+++ ++KF+
Sbjct: 117 DKLQPLLDEIQTMRKFQ 133
>gi|345315614|ref|XP_001517684.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Ornithorhynchus anatinus]
Length = 104
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 73/108 (67%), Gaps = 5/108 (4%)
Query: 31 IILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFE 90
++L+H+ +Q + D+ ++S+VF K+L Y RFSR+KN + + VR +L + +L +FE
Sbjct: 1 MLLEHRKQQNESAEDE--QELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFE 58
Query: 91 LCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
L L NLCPET EEA A++PS++ R +DE ++++L+D+ + F+
Sbjct: 59 LACLANLCPETAEEAKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 103
>gi|383851643|ref|XP_003701341.1| PREDICTED: transcriptional adapter 2-alpha-like isoform 1
[Megachile rotundata]
Length = 569
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 74/115 (64%), Gaps = 5/115 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF A+ L+ EV+++L+H+ + Q S + + S+VF KSL Y RF R+KN + +
Sbjct: 452 EFENAETLLISEVSMLLEHR--KAQNESAEEEQEFSEVFMKSLTYTNRFRRFKNKETIAA 509
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 510 VRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEELRTILDDI 561
>gi|28076931|ref|NP_081377.1| DNA-directed RNA polymerase II subunit RPB4 isoform 2 [Mus
musculus]
gi|338715739|ref|XP_001499044.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Equus
caballus]
gi|13435942|gb|AAH04810.1| Polymerase (RNA) II (DNA directed) polypeptide D [Mus musculus]
gi|344254896|gb|EGW11000.1| DNA-directed RNA polymerase II subunit RPB4 [Cricetulus griseus]
gi|432115789|gb|ELK36944.1| DNA-directed RNA polymerase II subunit RPB4 [Myotis davidii]
Length = 104
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 73/108 (67%), Gaps = 5/108 (4%)
Query: 31 IILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFE 90
++L+H+ +Q + D+ ++S+VF K+L Y RFSR+KN + + VR +L + +L +FE
Sbjct: 1 MLLEHRKQQNESAEDE--QELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFE 58
Query: 91 LCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
L L NLCPET EE+ A++PS++ R +DE ++++L+D+ + F+
Sbjct: 59 LACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 103
>gi|347965542|ref|XP_003435782.1| AGAP001228-PB [Anopheles gambiae str. PEST]
gi|333470463|gb|EGK97631.1| AGAP001228-PB [Anopheles gambiae str. PEST]
Length = 139
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 82/127 (64%), Gaps = 5/127 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+AA+L+ EF A+ L+ EV ++L+H+ + Q S + + S+VF K+ Y F
Sbjct: 11 EEDAADLQFPKEFESAETLLISEVHMLLEHR--KNQNESSEEEQEFSEVFHKTYTYTNEF 68
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
+++N + + VR +L + +L +FEL LGNLCP + EEA A++PS++ GR DDE ++
Sbjct: 69 RKFRNKETIASVRSLLMQKKLHKFELAALGNLCPASPEEAKALIPSLE--GRFEDDE-LQ 125
Query: 126 KMLNDLS 132
++L+D+
Sbjct: 126 QILDDIG 132
>gi|301118222|ref|XP_002906839.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108188|gb|EEY66240.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 155
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 25/128 (19%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMN--QVSQVFEKSLQYVKR 64
E+AAEL +GD+F CL N EVA+IL+ +Q SD Q++ VF+K+ YV+R
Sbjct: 12 EDAAELNLGDDFRNETCLSNAEVAVILE------KQKSDYETQEKQLTNVFQKTYSYVQR 65
Query: 65 FSRYKNPDA----VRQVREIL-------------SRYQLAEFELCVLGNLCPETVEEAIA 107
FS K+P A V ++RE L Y+L EFE+ L NL PE VEEA+A
Sbjct: 66 FSGTKDPVANQASVTELREALMSLAFQREADGETVEYRLEEFEIACLSNLNPEEVEEAVA 125
Query: 108 MVPSIKTR 115
++PS+ R
Sbjct: 126 LIPSLHKR 133
>gi|348688883|gb|EGZ28697.1| hypothetical protein PHYSODRAFT_552395 [Phytophthora sojae]
Length = 155
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 25/128 (19%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMN--QVSQVFEKSLQYVKR 64
E+AAEL +GD+F CL N EVA+IL+ +Q SD Q++ VF+K+ YV+R
Sbjct: 12 EDAAELNLGDDFRNETCLSNAEVAVILE------KQKSDYETQEKQLTNVFQKTYSYVQR 65
Query: 65 FSRYKNPDA----VRQVREIL-------------SRYQLAEFELCVLGNLCPETVEEAIA 107
FS K+P A V ++RE L Y+L EFE+ L NL PE VEEA+A
Sbjct: 66 FSGTKDPVANQASVTELREALMSLAFQREEDGETVEYRLEEFEIACLSNLNPEEVEEAVA 125
Query: 108 MVPSIKTR 115
++PS+ R
Sbjct: 126 LIPSLHKR 133
>gi|358339513|dbj|GAA47564.1| DNA-directed RNA polymerase II subunit RPB4 [Clonorchis sinensis]
Length = 140
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Query: 8 NAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSR 67
+A ELK EF A LM EV ++L+H+ EQ + + + ++SQ F K+L Y + SR
Sbjct: 12 DACELKFPKEFENADTLMLSEVKLLLEHRKEQNESATVHEL-ELSQAFTKTLNYATQLSR 70
Query: 68 YKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 127
+ N + + VR +LS+ + FEL + NL P+T EEA A++PS+ + DE ++++
Sbjct: 71 FNNRETIESVRSLLSQKRFHGFELAAIANLLPDTAEEAKALIPSLDSSR--FTDEELQQL 128
Query: 128 LNDLSLIKKFE 138
L+++ + F+
Sbjct: 129 LDEIQSKRSFQ 139
>gi|388857176|emb|CCF49189.1| related to Rpb4-16 kD subunit of DNA-directed RNA polymerase II
[Ustilago hordei]
Length = 167
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 28/157 (17%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHK---YEQLQQTSDDPMNQV-SQVFEKSLQ 60
E+E+AA K+G EF A CL+ EV ++ T+D ++V + VF K+
Sbjct: 14 EDEDAAIGKLGAEFDDAGCLLISEVELVFSQPGALNSSTTSTADGSRDEVATAVFSKTKD 73
Query: 61 YVKRFSRYKNPDAVRQVREILSRY--------------------QLAEFELCVLGNLCPE 100
YV FSRYK+P+ +R++RE+L ++ QL +FE+ L NLC
Sbjct: 74 YVSEFSRYKDPNTIREIRELLLKHARLDERQVDEEANEIQQTGLQLTQFEMAQLANLCIT 133
Query: 101 TVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 137
VEEA A++P++ TR A D +++M N I++F
Sbjct: 134 EVEEAKALIPTLATRDEAMLDGVLQEMDN----IRRF 166
>gi|402586662|gb|EJW80599.1| RNA polymerase II subunit protein 4, partial [Wuchereria bancrofti]
Length = 129
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 67/100 (67%), Gaps = 2/100 (2%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
+E+A ELK EF +A L+ EV ++L+H+ +Q +Q + ++++S VF K+L Y +R
Sbjct: 26 DEDATELKFPKEFEQADTLLTSEVYLLLEHRRQQSEQKEE--IDEMSDVFVKTLNYTRRM 83
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA 105
+R+KN + +R VR +L+ L +FE+ + NLCPET EEA
Sbjct: 84 ARFKNRETIRAVRTLLATKPLHKFEVAQIANLCPETSEEA 123
>gi|443900174|dbj|GAC77501.1| hypothetical protein PANT_26d00080 [Pseudozyma antarctica T-34]
Length = 166
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 27/155 (17%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
E+E+AA K+G+EF A CL+ EV ++ + + L + + + VF K+ YV
Sbjct: 16 EDEDAAIGKLGEEFDDAGCLLISEVELVF-SQPDALGDGTAGRDDVATAVFSKTKDYVTE 74
Query: 65 FSRYKNPDAVRQVREILSRY----------------------QLAEFELCVLGNLCPETV 102
FSRYK+P+ +R++RE+L ++ QL +FE+ L NLC V
Sbjct: 75 FSRYKDPNTIREIRELLLKHAKLDDKPVDEDGNEIDAPDTGLQLTQFEMAQLANLCITEV 134
Query: 103 EEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 137
+EA A++P++ TR DD ++ +L +L +++F
Sbjct: 135 DEAKALIPTLATR----DDALLDSLLQELDNVRRF 165
>gi|256084764|ref|XP_002578596.1| DNA-directed RNA polymerase II [Schistosoma mansoni]
gi|353232909|emb|CCD80264.1| putative dna-directed RNA polymerase II [Schistosoma mansoni]
Length = 140
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 8 NAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSR 67
+A+ELK +F A LM EV I+L+H+ EQ + + + ++S VF K+L YV +FS+
Sbjct: 12 DASELKFSKDFENADTLMLAEVKILLEHRKEQNENATIHEL-ELSPVFTKTLNYVTQFSK 70
Query: 68 YKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ N + + VR +L++ + FEL L NL P+T EE+ A++PS+ +
Sbjct: 71 FNNRETIESVRNLLTQKRFHNFELASLANLLPDTAEESKALLPSLDS 117
>gi|350418623|ref|XP_003491918.1| PREDICTED: transcriptional adapter 2-alpha-like [Bombus impatiens]
Length = 569
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 78/128 (60%), Gaps = 6/128 (4%)
Query: 5 EEENAAELKIGD-EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
E + A L++ EF A+ L+ EV ++L+H+ + Q S + + S+VF KSL Y
Sbjct: 439 ENKKAGYLRLAQAEFENAETLLISEVLMLLEHR--KAQNESAEEEQEFSEVFMKSLTYTN 496
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
RF R+KN + + VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE
Sbjct: 497 RFRRFKNKETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEE 553
Query: 124 IEKMLNDL 131
+ +L D+
Sbjct: 554 LRTILEDI 561
>gi|380027418|ref|XP_003697421.1| PREDICTED: transcriptional adapter 2-alpha-like [Apis florea]
Length = 569
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 73/115 (63%), Gaps = 5/115 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF A+ L+ EV ++L+H+ + Q S + + S+VF KSL Y RF R+KN + +
Sbjct: 452 EFENAETLLISEVYMLLEHR--KAQNESAEEEQEFSEVFMKSLTYTNRFRRFKNKETIAA 509
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 510 VRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEELRTILDDI 561
>gi|340722607|ref|XP_003399695.1| PREDICTED: transcriptional adapter 2-alpha-like [Bombus terrestris]
Length = 569
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 78/128 (60%), Gaps = 6/128 (4%)
Query: 5 EEENAAELKIGD-EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
E + A L++ EF A+ L+ EV ++L+H+ + Q S + + S+VF KSL Y
Sbjct: 439 ENKKAGYLRLAQAEFENAETLLISEVLMLLEHR--KAQNESAEEEQEFSEVFMKSLTYTN 496
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
RF R+KN + + VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE
Sbjct: 497 RFRRFKNKETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEE 553
Query: 124 IEKMLNDL 131
+ +L D+
Sbjct: 554 LRTILEDI 561
>gi|328787524|ref|XP_391932.4| PREDICTED: transcriptional adapter 2-alpha-like [Apis mellifera]
Length = 569
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 73/115 (63%), Gaps = 5/115 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF A+ L+ EV ++L+H+ + Q S + + S+VF KSL Y RF R+KN + +
Sbjct: 452 EFENAETLLISEVYMLLEHR--KAQNESAEEEQEFSEVFMKSLTYTNRFRRFKNKETIAA 509
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 510 VRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEELRTILDDI 561
>gi|383851645|ref|XP_003701342.1| PREDICTED: transcriptional adapter 2-alpha-like isoform 2
[Megachile rotundata]
Length = 580
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 5/115 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
+F A+ L+ EV+++L+H+ + Q S + + S+VF KSL Y RF R+KN + +
Sbjct: 463 QFENAETLLISEVSMLLEHR--KAQNESAEEEQEFSEVFMKSLTYTNRFRRFKNKETIAA 520
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 521 VRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEELRTILDDI 572
>gi|297599854|ref|NP_001047971.2| Os02g0723300 [Oryza sativa Japonica Group]
gi|255671217|dbj|BAF09885.2| Os02g0723300, partial [Oryza sativa Japonica Group]
Length = 128
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Query: 24 LMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSR 83
LMNCEVA +L +E + S+DP ++ + F+K+ QYVK +++ +V+QV + L +
Sbjct: 15 LMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVKQVLDPLRK 74
Query: 84 YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 135
Y +++ E+C++ N+ PET+EE A+VPS+K R+ ++ I + L L+ IK
Sbjct: 75 YGVSDGEMCLIANVGPETIEEVYALVPSLKAT-RSLNESPIMEALTALADIK 125
>gi|196007958|ref|XP_002113845.1| hypothetical protein TRIADDRAFT_26370 [Trichoplax adhaerens]
gi|190584249|gb|EDV24319.1| hypothetical protein TRIADDRAFT_26370 [Trichoplax adhaerens]
Length = 106
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
Query: 31 IILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFE 90
++L+H+ Q + D ++S+VF+K+L + KRFS++KN + + VR +L+++ +FE
Sbjct: 1 MLLEHRKAQNEADELDEDQEMSEVFQKTLSHTKRFSKFKNKETIAAVRSLLNKHNFHKFE 60
Query: 91 LCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
L L NLCPET +EA +++PS+ + +DDE ++++L+D+
Sbjct: 61 LASLANLCPETSDEAKSLMPSLNGK---YDDEEMQQILDDI 98
>gi|170042819|ref|XP_001849109.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Culex
quinquefasciatus]
gi|167866266|gb|EDS29649.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Culex
quinquefasciatus]
Length = 139
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 78/127 (61%), Gaps = 5/127 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+AA+L+ EF A+ L+ EV ++L+H+ + Q S + + S VF K+ Y F
Sbjct: 11 EEDAADLQFPKEFENAETLLISEVHMLLEHR--KNQNESSEEEQEFSDVFLKTYNYTGLF 68
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
++KN + + VR +L +L +FEL LGNLCPE EEA A++PS++ R +DE +
Sbjct: 69 RKFKNKETIASVRNLLMSKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELR 125
Query: 126 KMLNDLS 132
++L+D+
Sbjct: 126 QILDDIG 132
>gi|50253574|gb|AAT71989.1| At4g15950 [Arabidopsis thaliana]
gi|51971649|dbj|BAD44489.1| unnamed protein product [Arabidopsis thaliana]
Length = 205
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
A+C+M+CE ILD QL S+DP ++ ++++L YV+ Y NP +VR+V E
Sbjct: 89 AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 148
Query: 81 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
L Y +++ E+CV+ N E+V+E +A +PS+KT+ + ++ ++ L +LS +KK E
Sbjct: 149 LKTYGISDGEMCVIANASSESVDEVLAFIPSLKTK-KEVINQPLQDALEELSKLKKSE 205
>gi|307179587|gb|EFN67883.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Camponotus
floridanus]
Length = 124
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 73/115 (63%), Gaps = 5/115 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF A+ L+ EV ++L+H+ + Q S + + S+VF KSL Y RF + KN + +
Sbjct: 7 EFENAETLLISEVYMLLEHR--KAQNESAEEEQEFSEVFMKSLTYTNRFGKLKNKETIAA 64
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
VR +L + +L +FE+ L NLCPET EEA A++PS++ GR D+E + +L+D+
Sbjct: 65 VRSLLMQKKLHKFEIASLANLCPETPEEAKALIPSLE--GRLEDEE-LRTILDDI 116
>gi|334186572|ref|NP_193330.2| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|332658269|gb|AEE83669.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
Length = 205
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
A+C+M+CE ILD QL S+DP ++ ++++L YV+ Y NP +VR+V E
Sbjct: 89 AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 148
Query: 81 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
L Y +++ E+CV+ N E+V+E +A +PS+KT+ + ++ ++ L +LS +KK E
Sbjct: 149 LKTYGISDGEMCVIANASSESVDEVLAFIPSLKTK-KEVINQPLQDALEELSKLKKSE 205
>gi|195348909|ref|XP_002040989.1| GM15313 [Drosophila sechellia]
gi|194122594|gb|EDW44637.1| GM15313 [Drosophila sechellia]
Length = 137
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F ++KN + +
Sbjct: 20 EFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMS 77
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
R +L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 78 ARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDIG 130
>gi|240849411|ref|NP_001155406.1| histone acetyltransferase-like [Acyrthosiphon pisum]
gi|328700946|ref|XP_003241435.1| PREDICTED: DNA-directed RNA polymerase II 16 kDa polypeptide-like
[Acyrthosiphon pisum]
gi|239793466|dbj|BAH72847.1| ACYPI000946 [Acyrthosiphon pisum]
Length = 138
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 85/131 (64%), Gaps = 5/131 (3%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
M+ +E+AA L+ EF A+ L+ EV ++L K+ + Q S + + S+VF K+L
Sbjct: 5 MNAAVDEDAALLQFPKEFENAETLLISEVNMLL--KFRKNQNESAEEEQEFSEVFNKTLT 62
Query: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
Y ++ S++KN + + VR +L+ +L +FEL +GNLCP+ +EA +++PS++ GR D
Sbjct: 63 YTEQCSKFKNKETIVAVRNLLAGKKLHKFELASIGNLCPQLADEAKSLIPSLE--GRFDD 120
Query: 121 DEAIEKMLNDL 131
DE ++++L+D+
Sbjct: 121 DE-LQQILDDI 130
>gi|194764549|ref|XP_001964391.1| GF23150 [Drosophila ananassae]
gi|190614663|gb|EDV30187.1| GF23150 [Drosophila ananassae]
Length = 624
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
+F A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F ++KN + +
Sbjct: 507 QFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMS 564
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
VR +L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 565 VRSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDIG 617
>gi|45735999|dbj|BAD13027.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 238
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 80/134 (59%), Gaps = 9/134 (6%)
Query: 10 AELKIGDEFLKAKC-LMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRY 68
AELK+ + C LMNCEVA +L +E + S+DP ++ + F+K+ QYVK +++
Sbjct: 103 AELKLELDMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQF 162
Query: 69 KNPDAVRQV-------REILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
+V+QV R L +Y +++ E+C++ N+ PET+EE A+VPS+K R+ ++
Sbjct: 163 STAQSVKQVLDSLTSIRSPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKAT-RSLNE 221
Query: 122 EAIEKMLNDLSLIK 135
I + L L+ IK
Sbjct: 222 SPIMEALTALADIK 235
>gi|393221841|gb|EJD07325.1| hypothetical protein FOMMEDRAFT_164324 [Fomitiporia mediterranea
MF3/22]
Length = 135
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 14/138 (10%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+ E+EE+A+ LK+G EF A CL+ EV +L+++ + T V+ K+L+Y
Sbjct: 10 TAEQEEDASVLKLGPEFNNAGCLLISEVKYLLENRDKDAPDTV---------VYNKTLEY 60
Query: 62 VKRFSRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
VK+F+++ D+ VRE L R L +FE + NLCP EEA +++PS+ D
Sbjct: 61 VKQFAKFTTTDSASAVRETLRREPLLTQFETAQIANLCPADAEEAKSIIPSLA----KID 116
Query: 121 DEAIEKMLNDLSLIKKFE 138
D+ ++ +L+++ ++KF+
Sbjct: 117 DDRLQALLDEIQTMRKFQ 134
>gi|345497367|ref|XP_001599421.2| PREDICTED: transcriptional adapter 2-alpha [Nasonia vitripennis]
Length = 569
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 76/120 (63%), Gaps = 7/120 (5%)
Query: 12 LKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNP 71
LKI +F A L+ EV ++L+H+ + Q S + + S+VF KSL Y RF ++KN
Sbjct: 449 LKI--DFENADTLLISEVHMLLEHR--KAQNESAEEEQEFSEVFMKSLTYTNRFRKFKNK 504
Query: 72 DAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
+ + VR +LS+ +L +FEL + NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 505 ETIAAVRNLLSQKKLHKFELASIANLCPETPEEAKALIPSLEGRL---EDEELRTILDDI 561
>gi|340376921|ref|XP_003386979.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Amphimedon queenslandica]
Length = 139
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 77/128 (60%), Gaps = 5/128 (3%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
E +E+A EL+ G +F A L+ EV ++L+H+ Q + DD +S+VF K+L Y +
Sbjct: 9 ELQEDATELRFGKDFDTADALLVSEVKMLLEHRKAQHESQDDD--QDLSEVFTKTLDYCQ 66
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
FS+Y + + + +R L +++L +FE+ L NL P +EA ++PS++ R DD
Sbjct: 67 TFSKYNSRETISAIRGALQKHKLHKFEVACLANLAPADADEAKTLLPSLQGR---FDDLE 123
Query: 124 IEKMLNDL 131
+ ++L+D+
Sbjct: 124 LNELLDDI 131
>gi|356532865|ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Glycine max]
Length = 211
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Query: 22 KCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREIL 81
KCLM+CE IL E++ S D ++ F+K LQY K S+Y + ++R + + L
Sbjct: 96 KCLMDCEAVDILQGIQERMVMLSRDSTVKMPISFDKGLQYAKSNSKYLDLQSIRHILDRL 155
Query: 82 SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
++ + + E+CV+GN+CPET++E A++PS+K R R D + ++ L++L+
Sbjct: 156 AKCGVTDSEICVIGNVCPETIDEVFALLPSLKDR-RNIDSQVLKDSLSELA 205
>gi|195152017|ref|XP_002016935.1| GL22027 [Drosophila persimilis]
gi|194111992|gb|EDW34035.1| GL22027 [Drosophila persimilis]
Length = 629
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
+F A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F ++KN + +
Sbjct: 512 QFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMS 569
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKK 136
VR +L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+ +
Sbjct: 570 VRSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDIGTKRS 626
Query: 137 FE 138
+
Sbjct: 627 LQ 628
>gi|169849315|ref|XP_001831361.1| hypothetical protein CC1G_00908 [Coprinopsis cinerea okayama7#130]
gi|116507629|gb|EAU90524.1| hypothetical protein CC1G_00908 [Coprinopsis cinerea okayama7#130]
Length = 134
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 14/135 (10%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE+AA LK+G EF A CL+ EV +L+++ + T+ V+ K+L YVK
Sbjct: 12 DEEDAATLKLGPEFNNAGCLLISEVKYLLENREKDAPDTA---------VYNKTLDYVKT 62
Query: 65 FSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+++ D+ VRE L R L +FE + NLCP + EEA +++PS+ DD+
Sbjct: 63 FAKFNTTDSASAVRETLRREPALTQFETAQIANLCPASAEEAKSIIPSLV----KIDDDR 118
Query: 124 IEKMLNDLSLIKKFE 138
++ +++++ ++KF+
Sbjct: 119 LQALVDEIQTMRKFQ 133
>gi|336368399|gb|EGN96742.1| hypothetical protein SERLA73DRAFT_140488 [Serpula lacrymans var.
lacrymans S7.3]
Length = 134
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 79/135 (58%), Gaps = 14/135 (10%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A+ LK+G EF A CL+ EV +L+++ + T+ V+ K+L+YVK
Sbjct: 12 EEEDASALKLGAEFNNAGCLLISEVKYLLENRDKDAPDTA---------VYNKTLEYVKT 62
Query: 65 FSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+++ D+ VRE L R L +FE + NLCP EEA +++PS+ DD+
Sbjct: 63 FTKFNTTDSASAVRETLRREPALTQFETAQIANLCPGDAEEAKSVIPSLV----KIDDDR 118
Query: 124 IEKMLNDLSLIKKFE 138
++ +L+++ ++KF+
Sbjct: 119 LQALLDEIQTMRKFQ 133
>gi|307196407|gb|EFN77996.1| Transcriptional adapter 2-alpha [Harpegnathos saltator]
Length = 570
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 5 EEENAAELKIGD-EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
E + LK+ +F A+ L+ EV ++L+H+ + Q S + + S+VF KSL Y
Sbjct: 440 ENKKNGSLKLAQAQFENAETLLISEVYMLLEHR--KAQNESAEEEQEFSEVFMKSLTYTN 497
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
RF + KN + + VR +L++ +L +FEL L NLCPET EEA A++PS++ R +DE
Sbjct: 498 RFGKLKNKETITAVRNLLAQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEE 554
Query: 124 IEKMLNDL 131
+ +L D+
Sbjct: 555 LRTILEDI 562
>gi|388515433|gb|AFK45778.1| unknown [Medicago truncatula]
Length = 201
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 22 KCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYK--NPDAVRQVRE 79
KCLM+CE A++L +Q+ S DP ++ F+K L Y K S K NP++VR E
Sbjct: 84 KCLMDCEAAVMLQGIQDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESVRHTLE 143
Query: 80 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 137
L + L E E+CV+ N+CPET +E A++PS+K++ R + + +E+ L++L+ K+
Sbjct: 144 PLMNHDLTESEICVIANVCPETADEVFALLPSLKSK-RGINSQPVEEALSELAKFKQM 200
>gi|195343319|ref|XP_002038245.1| GM10729 [Drosophila sechellia]
gi|194133266|gb|EDW54782.1| GM10729 [Drosophila sechellia]
Length = 146
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
+K L+ EV ++LDH+ + Q S D + S+VF K+ Y F ++KN + + R
Sbjct: 13 SKALLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSARSF 70
Query: 81 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 71 LMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 118
>gi|170086716|ref|XP_001874581.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649781|gb|EDR14022.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 134
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 14/135 (10%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A+ LK+G EF A CL+ EV +L+++ + T+ V+ K+L+YVK
Sbjct: 12 EEEDASALKLGPEFNNAGCLLISEVKYLLENRDKDAPDTA---------VYNKTLEYVKT 62
Query: 65 FSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+++ D+ VRE L R L +FE + NLCP EEA +++PS+ DD+
Sbjct: 63 FAKFNTTDSASAVRETLRREPALTQFETAQIANLCPADAEEAKSVIPSLVK----IDDDR 118
Query: 124 IEKMLNDLSLIKKFE 138
++ +L ++ ++KF+
Sbjct: 119 LQALLEEIQTMRKFQ 133
>gi|195569945|ref|XP_002102969.1| GD20190 [Drosophila simulans]
gi|194198896|gb|EDX12472.1| GD20190 [Drosophila simulans]
Length = 782
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
+F A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F ++KN + +
Sbjct: 665 QFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMS 722
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
R +L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 723 ARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDIG 775
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
+F A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F ++KN + +
Sbjct: 508 QFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMS 565
Query: 77 VREILSRYQ 85
R + Y+
Sbjct: 566 ARSNVQHYE 574
>gi|322792882|gb|EFZ16715.1| hypothetical protein SINV_12361 [Solenopsis invicta]
Length = 589
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF A+ L+ EV ++L+H+ + Q S + + S+VF KSL Y RF + KN + +
Sbjct: 472 EFENAETLLISEVYMLLEHR--KAQNESAEEEQEFSEVFMKSLTYTNRFGKLKNKETISA 529
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
VR +L + +L +FE+ L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 530 VRSLLMQKKLHKFEIASLANLCPETPEEAKALIPSLEGR---LEDEELRTILDDI 581
>gi|157113945|ref|XP_001652151.1| histone acetyltransferase, putative [Aedes aegypti]
gi|108877515|gb|EAT41740.1| AAEL006661-PA [Aedes aegypti]
Length = 139
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+AA+L+ EF A+ L+ EV ++L+H+ + Q + + + S+VF K+ Y F
Sbjct: 11 EEDAADLQFPKEFENAETLLISEVHMLLEHR--KNQNENSEEEQEFSEVFLKTYNYTGMF 68
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
++KN + + VR +L +L +FEL LGNLCPE +EA A++PS++ R +DE +
Sbjct: 69 RKFKNKETIASVRSLLMSKKLHKFELAALGNLCPEAPDEAKALIPSLEGR---FEDEELR 125
Query: 126 KMLNDLS 132
++L+D+
Sbjct: 126 QILDDIG 132
>gi|242009106|ref|XP_002425333.1| transcriptional adaptor, putative [Pediculus humanus corporis]
gi|212509118|gb|EEB12595.1| transcriptional adaptor, putative [Pediculus humanus corporis]
Length = 602
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
+F A+ L+ EV ++L+H+ + Q S + + S VF K+L Y RF ++KN + +
Sbjct: 485 QFENAETLIISEVHMLLEHR--KAQNESAEEELEFSDVFMKTLTYTNRFRKFKNKETISS 542
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
VR +L + +L +FEL L NLCPET EEA A++PS++ R +DE + + L+D+
Sbjct: 543 VRNLLMQKKLHKFELAALANLCPETPEEAKALIPSLEGR---FEDEELRQTLDDI 594
>gi|357448135|ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
gi|124360902|gb|ABN08874.1| RNA polymerase Rpb4 [Medicago truncatula]
gi|355483391|gb|AES64594.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
Length = 223
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 22 KCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYK--NPDAVRQVRE 79
KCLM+CE A++L +Q+ S DP ++ F+K L Y K S K NP++VR E
Sbjct: 106 KCLMDCEAAVMLQGIQDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESVRHTLE 165
Query: 80 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 137
L + L E E+CV+ N+CPET +E A++PS+K++ R + + +E+ L++L+ K+
Sbjct: 166 PLMNHDLTESEICVIANVCPETADEVFALLPSLKSK-RGINSQPVEEALSELAKFKQM 222
>gi|291391381|ref|XP_002712436.1| PREDICTED: DNA directed RNA polymerase II polypeptide D
[Oryctolagus cuniculus]
Length = 129
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 18/137 (13%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLTY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLC E GR +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCLE---------------GR-FED 111
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 112 EELQQILDDIQTKRSFQ 128
>gi|384496661|gb|EIE87152.1| hypothetical protein RO3G_11863 [Rhizopus delemar RA 99-880]
Length = 121
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
G E E+A L +G+EF A+CL EV +ILD + + T + V K+L+Y
Sbjct: 15 GGPELEDATNLNLGEEFSGAQCLYLSEVKVILD--VQDSKGTEVQNRASTNAVLAKTLEY 72
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVP 110
V+ FSRY D+VR+VR+I+ + L +FE+ + NLC E EEA A++P
Sbjct: 73 VRNFSRYNTIDSVREVRQIMGK-NLTQFEVAQMANLCCEEAEEAKALIP 120
>gi|403411898|emb|CCL98598.1| predicted protein [Fibroporia radiculosa]
Length = 153
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 24/149 (16%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A+ LK+G EF A CL+ EV +L+++ + T+ V+ K+L+YVK
Sbjct: 13 EEEDASVLKLGAEFNNAGCLLISEVKYLLENRDKDAPDTA---------VYNKTLEYVKT 63
Query: 65 FSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH---- 119
F+++ D+ VRE L R L +FE + NLCP EEA ++VP +H
Sbjct: 64 FAKFNTTDSASAVRETLRREPALTQFETAQIANLCPANAEEAKSVVPRYMVTSSSHDYVI 123
Query: 120 ----------DDEAIEKMLNDLSLIKKFE 138
DD+ ++ +L ++ ++KF+
Sbjct: 124 AYGNQSLVKIDDDRLQTLLQEIQTMRKFQ 152
>gi|343426150|emb|CBQ69681.1| related to Rpb4-16 kD subunit of DNA-directed RNA polymerase II
[Sporisorium reilianum SRZ2]
Length = 174
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIIL---DHKYEQLQQTSDDPMNQV-SQVFEKSLQ 60
E+E+AA K+G EF CL+ EV ++ D + ++V + VF K+
Sbjct: 17 EDEDAAIGKLGTEFDDVGCLLISEVELVFSQPDSLGSSATEAGAGGRDEVATAVFSKTKD 76
Query: 61 YVKRFSRYKNPDAVRQVREILSRY------------------------QLAEFELCVLGN 96
YV FSRYK+P+ +R++RE+L ++ QL +FE+ L N
Sbjct: 77 YVSEFSRYKDPNTIREIRELLLKHAKLDDRLVDEHGNELPDDDTPDGLQLTQFEMAQLAN 136
Query: 97 LCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 137
LC V+EA A++P++ TR DD ++ +L +L I++F
Sbjct: 137 LCITEVDEAKALIPTLATR----DDALLDSLLQELDNIRRF 173
>gi|325180261|emb|CCA14664.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 155
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 21/126 (16%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFS 66
E+AAEL +G++F CL N EVA+IL E+ +Q ++ Q++ VF+K+ YV+RFS
Sbjct: 12 EDAAELNLGEDFRDETCLSNAEVAVIL----EKQKQDYENQEKQLTNVFQKTYSYVQRFS 67
Query: 67 RYKNP----DAVRQVREILSRY-------------QLAEFELCVLGNLCPETVEEAIAMV 109
K+P +V ++RE L +L EFE+ L NL PE VEEA++++
Sbjct: 68 GTKDPVSNQASVTELREALMSLVFNREIDERVVEIRLEEFEISCLSNLNPEEVEEAVSLI 127
Query: 110 PSIKTR 115
PS+ R
Sbjct: 128 PSLSKR 133
>gi|297804626|ref|XP_002870197.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
gi|297316033|gb|EFH46456.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
Length = 210
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 59/95 (62%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
A+C+M+CE ILD L S+DP ++ ++++L YV Y NP +VR+V E
Sbjct: 94 AECMMDCEAFQILDGIKGHLVGLSEDPSIKIPVSYDRALAYVDSCVHYSNPQSVRKVLEP 153
Query: 81 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
L + +++ E+CV+ N P+TV+E +A +PS+K +
Sbjct: 154 LKTHGVSDGEMCVIANASPDTVDEVLAFIPSLKAK 188
>gi|71021277|ref|XP_760869.1| hypothetical protein UM04722.1 [Ustilago maydis 521]
gi|46100965|gb|EAK86198.1| hypothetical protein UM04722.1 [Ustilago maydis 521]
Length = 175
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 37/164 (22%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQ------VSQVFEKS 58
E+E+AA K+G EF CL+ EV ++ + +QL ++ P + VF K+
Sbjct: 17 EDEDAAIGKLGSEFDDIGCLLISEVELVF-SQPDQLGSMAN-PAGAGGRDEVATAVFSKT 74
Query: 59 LQYVKRFSRYKNPDAVRQVREILSRY-------------------------QLAEFELCV 93
YV FSRYK+P+ +R++RE+L ++ QL +FE+
Sbjct: 75 KDYVSEFSRYKDPNTIREIRELLLKHAKLDDRQIDEDGNELPEDEANAAGLQLTQFEMAQ 134
Query: 94 LGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 137
L NLC V+EA A++P++ TR DD ++ +L +L I++F
Sbjct: 135 LANLCITEVDEAKALIPTLATR----DDALLDSLLQELDNIRRF 174
>gi|332022936|gb|EGI63202.1| Transcriptional adapter 2-alpha [Acromyrmex echinatior]
Length = 567
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
+F A+ L+ EV ++L+H+ + Q S + + S+VF KSL Y RF + KN + +
Sbjct: 450 QFENAETLLISEVYMLLEHR--KAQNESAEEEQEFSEVFMKSLTYTNRFGKLKNKETIAA 507
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
VR +L + +L +FE+ L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 508 VRSLLMQKKLHKFEIASLANLCPETPEEAKALIPSLEGR---LEDEELRTILDDI 559
>gi|242216811|ref|XP_002474210.1| predicted protein [Postia placenta Mad-698-R]
gi|220726628|gb|EED80571.1| predicted protein [Postia placenta Mad-698-R]
Length = 134
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 14/135 (10%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A+ LK+G EF A CL+ EV +L+++ + T+ V+ K+L+YVK
Sbjct: 12 EEEDASVLKLGPEFNNAGCLLISEVKYLLENRDKDAPDTA---------VYNKTLEYVKT 62
Query: 65 FSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+++ D+ VRE L R L +FE + NLCP EEA ++VPS+ DD+
Sbjct: 63 FAKFNTTDSASAVRETLRREPALTQFETAQIANLCPVDAEEAKSVVPSLV----KIDDDR 118
Query: 124 IEKMLNDLSLIKKFE 138
+ +L ++ ++KF+
Sbjct: 119 LNALLVEIQTMRKFQ 133
>gi|212275294|ref|NP_001130236.1| uncharacterized protein LOC100191330 [Zea mays]
gi|194688634|gb|ACF78401.1| unknown [Zea mays]
gi|194692750|gb|ACF80459.1| unknown [Zea mays]
gi|195621576|gb|ACG32618.1| hypothetical protein [Zea mays]
gi|195623648|gb|ACG33654.1| hypothetical protein [Zea mays]
gi|238014082|gb|ACR38076.1| unknown [Zea mays]
gi|413923710|gb|AFW63642.1| alpha-6-galactosyltransferase, mRNA isoform 1 [Zea mays]
gi|413923711|gb|AFW63643.1| alpha-6-galactosyltransferase, mRNA isoform 2 [Zea mays]
gi|413923712|gb|AFW63644.1| alpha-6-galactosyltransferase, mRNA isoform 3 [Zea mays]
gi|413923713|gb|AFW63645.1| alpha-6-galactosyltransferase, mRNA isoform 4 [Zea mays]
gi|413923714|gb|AFW63646.1| hypothetical protein ZEAMMB73_143964 [Zea mays]
Length = 219
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
++ LMNCE A +L +E + S+DP ++ + F+K+ QY K + + +V+Q E
Sbjct: 103 SRMLMNCEAAELLQEIHEHMAILSEDPKIKIPESFDKAFQYSKDGNHFTTASSVKQAIEP 162
Query: 81 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 135
L + +++ E+C++ N+ PETVEE A+VPS+K R+ + ++ ++L L+ IK
Sbjct: 163 LKKCGVSDGEICMIANIGPETVEEVYALVPSLKAN-RSAIEGSVTEVLTALANIK 216
>gi|384247187|gb|EIE20674.1| polymeras-like protein II polypeptide D [Coccomyxa subellipsoidea
C-169]
Length = 141
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 7/137 (5%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
EEEENAAE + F A+ L N EV+ IL +Q +DP Q + + K+ +YV+
Sbjct: 7 EEEENAAEGRFPSVFDSAQALTNGEVSAILAKIVAAKKQ--EDPAYQPNPLLAKTQEYVE 64
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSI-KTRG---RAH 119
RFS KN +Q+R +L ++ FEL + NL PET EEA ++PS+ T+G R
Sbjct: 65 RFSGNKNEAVNQQIRMVLDAGEMTGFELASVANLQPETAEEARILIPSLDATQGDEPRFS 124
Query: 120 DDEAIEKMLNDLSLIKK 136
DD ++ +L+D++ K+
Sbjct: 125 DD-TLQIVLDDVATYKQ 140
>gi|194900250|ref|XP_001979670.1| GG16596 [Drosophila erecta]
gi|195036818|ref|XP_001989865.1| GH19030 [Drosophila grimshawi]
gi|195110591|ref|XP_001999863.1| GI22842 [Drosophila mojavensis]
gi|195392503|ref|XP_002054897.1| GJ24701 [Drosophila virilis]
gi|195497583|ref|XP_002096162.1| GE25223 [Drosophila yakuba]
gi|190651373|gb|EDV48628.1| GG16596 [Drosophila erecta]
gi|193894061|gb|EDV92927.1| GH19030 [Drosophila grimshawi]
gi|193916457|gb|EDW15324.1| GI22842 [Drosophila mojavensis]
gi|194152983|gb|EDW68417.1| GJ24701 [Drosophila virilis]
gi|194182263|gb|EDW95874.1| GE25223 [Drosophila yakuba]
Length = 104
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 31 IILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFE 90
++LDH+ + Q S D + S+VF K+ Y F ++KN + + VR +L + +L +FE
Sbjct: 1 MLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSVRSLLMQKKLHKFE 58
Query: 91 LCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
L LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 59 LAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDIG 97
>gi|320166248|gb|EFW43147.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 130
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIIL-DHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
+EE+AA+L++ ++F KA CL EV +IL D K S+ ++ EK+L YV+
Sbjct: 11 DEESAADLRLTEKFEKANCLFPAEVKLILEDRKNAHTNPESELSRIPITNTLEKTLAYVQ 70
Query: 64 RFSRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAM 108
F +YKN + R+VR L R++ +FE+ L +LCPE EEA A+
Sbjct: 71 AFPQYKNTETAREVRNKLERFEKFRQFEIAALASLCPEQAEEAKAL 116
>gi|219888911|gb|ACL54830.1| unknown [Zea mays]
Length = 115
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 24 LMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSR 83
LMNCE A +L +E + S+DP ++ + F+K+ QY K + + +V+Q E L +
Sbjct: 2 LMNCEAAELLQEIHEHMAILSEDPKIKIPESFDKAFQYSKDGNHFTTASSVKQAIEPLKK 61
Query: 84 YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 135
+++ E+C++ N+ PETVEE A+VPS+K R+ + ++ ++L L+ IK
Sbjct: 62 CGVSDGEICMIANIGPETVEEVYALVPSLKAN-RSAIEGSVTEVLTALANIK 112
>gi|158302373|ref|XP_321930.4| AGAP001228-PA [Anopheles gambiae str. PEST]
gi|157012920|gb|EAA01792.4| AGAP001228-PA [Anopheles gambiae str. PEST]
Length = 161
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 75/120 (62%), Gaps = 5/120 (4%)
Query: 13 KIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPD 72
++ EF A+ L+ EV ++L+H+ Q S + + S+VF K+ Y F +++N +
Sbjct: 40 RLFTEFESAETLLISEVHMLLEHRKNQ--NESSEEEQEFSEVFHKTYTYTNEFRKFRNKE 97
Query: 73 AVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
+ VR +L + +L +FEL LGNLCP + EEA A++PS++ GR DDE ++++L+D+
Sbjct: 98 TIASVRSLLMQKKLHKFELAALGNLCPASPEEAKALIPSLE--GRFEDDE-LQQILDDIG 154
>gi|307108038|gb|EFN56279.1| hypothetical protein CHLNCDRAFT_145153 [Chlorella variabilis]
Length = 130
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 13 KIGDEFL---KAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYK 69
K+ DE L K L EVA ++D + QQ D Q + + K+ +Y RF+ K
Sbjct: 4 KVDDEVLGDKDIKVLTISEVACLIDEYVKGTQQRDAD--YQPNPMLVKAAEYASRFATNK 61
Query: 70 NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLN 129
N D ++++RE+++ QL+E EL ++ NL ET +EA +VP++ R R DD ++ +L
Sbjct: 62 NRDTLQKIREVIAHNQLSELELGLVANLSIETADEARKLVPTLDDRDRFPDDATLDALLK 121
Query: 130 DLSLIKKFE 138
+L+ ++FE
Sbjct: 122 ELATYREFE 130
>gi|195450000|ref|XP_002072320.1| GK22783 [Drosophila willistoni]
gi|194168405|gb|EDW83306.1| GK22783 [Drosophila willistoni]
Length = 116
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 9/116 (7%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F ++KN + +
Sbjct: 3 EFESAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETII- 59
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
+L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 60 ---LLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDIG 109
>gi|390370008|ref|XP_003731750.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like,
partial [Strongylocentrotus purpuratus]
Length = 95
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 54 VFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ--LAEFELCVLGNLCPETVEEAIAMVPS 111
VF K+L Y RFSR+KN + + VR +L + Q L +FEL +L NLCPET EEA A++PS
Sbjct: 11 VFMKTLNYTGRFSRFKNRETIGDVRGLLQQQQPKLHKFELALLANLCPETAEEAKALIPS 70
Query: 112 IKTRGRAHDDEAIEKMLN 129
++ GR DDE E + N
Sbjct: 71 LE--GRFEDDELTEVLEN 86
>gi|326521954|dbj|BAK04105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 10 AELKIG-DEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRY 68
AELK+ D +K L NCEVA +L +E + S+DP ++ + F+K+ Y K + +
Sbjct: 103 AELKLQLDMSPNSKLLTNCEVAEMLQKIHEHMAILSEDPKIKIPESFDKAFLYAKEGNHF 162
Query: 69 KNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKML 128
+ V+++ L Y + + E+C++ N+ PET+EE A++PS+K R+ ++ I + L
Sbjct: 163 TSAKLVKEILGPLKDYGVNDGEICMIANIGPETIEEVYALIPSLKAT-RSINEGKIAEAL 221
Query: 129 NDLSLIK 135
L+ IK
Sbjct: 222 TALAKIK 228
>gi|402223652|gb|EJU03716.1| RNA polymerase II [Dacryopinax sp. DJM-731 SS1]
Length = 135
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 81/136 (59%), Gaps = 14/136 (10%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A++LK+ EF CL EV +L+ ++ D +QV+ K+L YV+
Sbjct: 11 EEEDASQLKLSSEFANDLCLSISEVRFLLELPRDR--GVPD------TQVYNKTLDYVRT 62
Query: 65 FSRYKNPDAVRQVREILSRY--QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
F+++ ++ + VR ++SR LA+FE + NL P T +EA +++P+++ +DD+
Sbjct: 63 FTKFPTQESTQAVRALISRGMDDLAQFETAQIANLTPLTADEAKSVIPTLQ----RYDDD 118
Query: 123 AIEKMLNDLSLIKKFE 138
++ +L+++ ++KF+
Sbjct: 119 VLQGILDEMQTLRKFQ 134
>gi|303275790|ref|XP_003057189.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461541|gb|EEH58834.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 150
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKY-EQLQQTSDDPMNQVSQVFEKSLQYVK 63
E+E+A EL++G++F A CL EV +I K + L + + ++VFE + YV+
Sbjct: 12 EDEDAQELRLGEDFTDAHCLSMDEVNLICAAKLGDDLDKIGEPTSTTQTKVFEMTNAYVR 71
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR----AH 119
RF++ R + ++ L +FE ++ NL EEAIA +PS+ +G H
Sbjct: 72 RFAKEAASRQTEAFRNLYAQAGLTDFEGAIMVNLNFGDYEEAIAHLPSLARKGDDGILIH 131
Query: 120 DDEAIEKMLNDLSLIKKFE 138
+E + K+++D++ +++FE
Sbjct: 132 SEEKVSKLIDDMADVRRFE 150
>gi|168032148|ref|XP_001768581.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680080|gb|EDQ66519.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 64
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 38 EQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNL 97
EQLQQ DP + S +F++ L+ V+RF + NPDAV Q+RE+L RY+L +FE CV GN+
Sbjct: 1 EQLQQLRSDPASHTSSIFQRKLRNVRRFGSFLNPDAVNQMREVLKRYRLHKFEECVAGNV 60
>gi|164659690|ref|XP_001730969.1| hypothetical protein MGL_1968 [Malassezia globosa CBS 7966]
gi|159104867|gb|EDP43755.1| hypothetical protein MGL_1968 [Malassezia globosa CBS 7966]
Length = 155
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 25/149 (16%)
Query: 5 EEENAAELKIGD--EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYV 62
E E+A+ K+G EF A CL+ EV + E S D + +S V +K+ +YV
Sbjct: 15 EVEDASTGKLGPVVEFQDAGCLLVSEVHLFFSRPGE-----SSDRDDGLSAVTQKTKEYV 69
Query: 63 KRFSRYKNPDAVRQVREILSRY--------------QLAEFELCVLGNLCPETVEEAIAM 108
FSRYK+ +R+VR +L ++ QL +FE+ L NL ++EA +
Sbjct: 70 DEFSRYKDQSTIREVRALLIKHAAQPDMEDEDEKGLQLTQFEMAQLANLSVTDIDEARTL 129
Query: 109 VPSIKTRGRAHDDEAIEKMLNDLSLIKKF 137
+P++ ++ DD +E +L++L+ I+ F
Sbjct: 130 IPTLASK----DDAQLESLLHELTAIRSF 154
>gi|388583691|gb|EIM23992.1| hypothetical protein WALSEDRAFT_59044 [Wallemia sebi CBS 633.66]
Length = 134
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 78/135 (57%), Gaps = 15/135 (11%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
++E+A++LK+G EF CL EV +LD + + +D P VF+K+ +YV
Sbjct: 14 DDEDASKLKLGAEFNDMGCLTISEVKHLLDGRAGE----ADTP------VFKKTSEYVNT 63
Query: 65 FSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+ + + ++ VRE L + ++ +FE +GNL P VEEA +++PS+ HD+
Sbjct: 64 FTVFGSKESAISVREALKKDEKMTQFEQAQIGNLVPGDVEEAKSLIPSL----YEHDEMT 119
Query: 124 IEKMLNDLSLIKKFE 138
++ +L++L ++K +
Sbjct: 120 VQTILDELDALRKMQ 134
>gi|452987725|gb|EME87480.1| hypothetical protein MYCFIDRAFT_27879 [Pseudocercospora fijiensis
CIRAD86]
Length = 152
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 81/138 (58%), Gaps = 15/138 (10%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE + +LK+G+ + L EV ++L E+L++ + P ++V+ K+ +Y K
Sbjct: 24 DEEASTQLKLGN-MTHEQALSPAEVTLML----ERLEEAA--PHKNHTEVYYKTKEYCKT 76
Query: 65 FSRYKNPDAVRQVREILSRYQ-----LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 119
FSR+++ A+ QV +I S + EFE C L LC ++VEEA ++PS++ G+
Sbjct: 77 FSRFRDNQAITQVNQITSNLTARGLGIVEFERCQLATLCCDSVEEARTLIPSLE--GKIS 134
Query: 120 DDEAIEKMLNDLSLIKKF 137
D+E +E LN++S ++ F
Sbjct: 135 DEE-LENTLNEISKLRDF 151
>gi|449020090|dbj|BAM83492.1| RNA polymerase II subunit [Cyanidioschyzon merolae strain 10D]
Length = 136
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 80/141 (56%), Gaps = 16/141 (11%)
Query: 1 MSGEEEENAAELKIGDEFL---KAKCLMNCEVAIILDHKYEQLQ---QTSDDPMNQVSQV 54
+ ++EENA LK G+ F + L+ CEVA +L K +L Q+S P +
Sbjct: 3 LGVDQEENAENLKFGELFGDNEHCQPLLICEVAELLRQKRAELPAELQSSLGP------I 56
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIK 113
F KS YV+RF+++++ + + VR L R+ +L FE L NL PET EA A++PS+K
Sbjct: 57 FVKSEAYVERFNQFRSAEVAKVVRVRLERHPELHPFERAQLANLLPETPAEAKAIIPSLK 116
Query: 114 TRGRAHDDEAIEKMLNDLSLI 134
+ DD+ + ++L DL+ +
Sbjct: 117 GK---LDDDVLGQLLRDLAAL 134
>gi|440639230|gb|ELR09149.1| DNA-directed RNA polymerase II subunit D [Geomyces destructans
20631-21]
Length = 149
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE AELK+G EF L + E A++++ + + D S++ K+L+Y+
Sbjct: 18 DEEAGAELKLG-EFQDVDALTHSEAALVINALVAKRKMDKDSKRVNDSEMLNKTLEYLDH 76
Query: 65 FSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + V V +LS + +LA+FE LG+LC E EEA +VPS+ + D+
Sbjct: 77 FARFKRKENVEAVERLLSAHPELAKFERAQLGSLCCELAEEAKTLVPSLADK---ISDDD 133
Query: 124 IEKMLNDLSLIKKFE 138
++++LN+++ + ++
Sbjct: 134 LQELLNEINKHRGYD 148
>gi|336381198|gb|EGO22350.1| hypothetical protein SERLADRAFT_339075 [Serpula lacrymans var.
lacrymans S7.9]
Length = 116
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 17/114 (14%)
Query: 5 EEENAAELKIG-------DEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEK 57
EEE+A+ LK+G EF A CL+ EV +L+++ + T+ V+ K
Sbjct: 11 EEEDASALKLGAVKRLHWSEFNNAGCLLISEVKYLLENRDKDAPDTA---------VYNK 61
Query: 58 SLQYVKRFSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVP 110
+L+YVK F+++ D+ VRE L R L +FE + NLCP EEA +++P
Sbjct: 62 TLEYVKTFTKFNTTDSASAVRETLRREPALTQFETAQIANLCPGDAEEAKSVIP 115
>gi|213401929|ref|XP_002171737.1| DNA-directed RNA polymerase II subunit RPB4 [Schizosaccharomyces
japonicus yFS275]
gi|211999784|gb|EEB05444.1| DNA-directed RNA polymerase II subunit RPB4 [Schizosaccharomyces
japonicus yFS275]
Length = 137
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDD--PMNQVSQVFEKSLQYVK 63
EE+A +LK+G EF L E I+++ Q + + PM + V +K+++Y
Sbjct: 9 EEDAGQLKLGPEFENEDMLTVSEAKILVETVLAQRSRETGGEVPM---TDVMKKTMEYFN 65
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K +A IL + +FE LG LC E EEA ++PS+ T+ DE+
Sbjct: 66 IFARFKTQEATYACERILGN-RFHKFERAQLGTLCCEDAEEARTLIPSLATK---ISDES 121
Query: 124 IEKMLNDLSLIKKFE 138
++ +L++LS ++KF+
Sbjct: 122 LQGILDELSTLRKFQ 136
>gi|156093884|ref|XP_001612980.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium vivax
Sal-1]
gi|148801854|gb|EDL43253.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
vivax]
Length = 132
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEK-SL 59
M+G E + L +G EF KCL CE+ +IL +QL+ TS N+ +Q K S
Sbjct: 1 MAGNEHGDVKNLDLGPEFKNCKCLNLCELQLILG---DQLRLTS--KRNEEAQALIKSSF 55
Query: 60 QYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRA 118
Y +F+ KN ++ VR L R +L E+E+ +L NL P+TV+EA +PS+ G
Sbjct: 56 DYANKFATIKNRSSIVDVRTNLERIGELHEYEIAMLVNLLPKTVQEARYFIPSLIRLG-- 113
Query: 119 HDDEAIEKMLNDL 131
DE + +L L
Sbjct: 114 --DETLNSILEHL 124
>gi|409040527|gb|EKM50014.1| hypothetical protein PHACADRAFT_105721 [Phanerochaete carnosa
HHB-10118-sp]
Length = 126
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 17/114 (14%)
Query: 5 EEENAAELKIGD-------EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEK 57
E+E+AA LK+G EF A CL+ EV +L+++ ++ T+ V+ K
Sbjct: 13 EDEDAAALKLGSGMANLASEFNNAGCLLISEVKYLLENRDKEPPDTA---------VYNK 63
Query: 58 SLQYVKRFSRYKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVP 110
+L+YVK F ++ DA VRE L R L +FE + NLCP EE+ +++P
Sbjct: 64 TLEYVKTFGKFNTTDAASAVRETLRREPALTQFETAQIANLCPADSEESKSIIP 117
>gi|453089606|gb|EMF17646.1| RNA_pol_Rpb4-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 148
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 80/138 (57%), Gaps = 15/138 (10%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE A LK+G+ + L EV ++L E++ + +D ++++ K+ +Y K
Sbjct: 20 DEEATARLKLGN-MTHEQALSPAEVTMML----ERIAEVAD--FRNTTEIYYKTKEYCKT 72
Query: 65 FSRYKNPDAVRQVREILS-----RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 119
FSR+K+ +AV QV +I S Y + EFE + LC ++ EEA ++PS++ G+
Sbjct: 73 FSRFKDANAVTQVNQISSGLTARGYGIVEFERAQIATLCCDSAEEARTLIPSLE--GKIS 130
Query: 120 DDEAIEKMLNDLSLIKKF 137
DDE ++ +L+++S ++ F
Sbjct: 131 DDE-LQAVLDEISKLRDF 147
>gi|452847857|gb|EME49789.1| hypothetical protein DOTSEDRAFT_76985 [Dothistroma septosporum
NZE10]
Length = 204
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 80/139 (57%), Gaps = 15/139 (10%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE LK+G E + L EV ++LD QL++ P + ++++ K+ Y +
Sbjct: 76 DEEATTHLKLG-EMSGEQALSPAEVTLMLD----QLEKARGQPNH--TEIYYKTRDYCRH 128
Query: 65 FSRYKNPDAVRQVREILSRYQ-----LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 119
F+R+K+ +++RQV +I + + +FE L LC +T EEA +VPS++ G+
Sbjct: 129 FARFKDDNSIRQVNQISTELTERELGITQFERAQLATLCCDTPEEARTLVPSLE--GKIA 186
Query: 120 DDEAIEKMLNDLSLIKKFE 138
DDE +E +LND++ ++ F+
Sbjct: 187 DDE-LEIVLNDIAKLRDFQ 204
>gi|19112207|ref|NP_595415.1| DNA-directed RNA polymerase II complex subunit Rpb4
[Schizosaccharomyces pombe 972h-]
gi|9297039|sp|O74825.1|RPB4_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb4;
Short=RNA polymerase II subunit B4
gi|256599718|pdb|3H0G|D Chain D, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599730|pdb|3H0G|P Chain P, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|7453509|gb|AAF62856.1|AF149308_1 RNA polymerase II specific subunit Rpb4 [Schizosaccharomyces pombe]
gi|3738191|emb|CAA21284.1| DNA-directed RNA polymerase II complex subunit Rpb4
[Schizosaccharomyces pombe]
gi|6088094|dbj|BAA85621.1| RNA polymerase II subunit 4 (Rpb4) [Schizosaccharomyces pombe]
Length = 135
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDD--PMNQVSQVFEKSLQYVK 63
EE+AA+LK+G EF L E I+++ Q + ++ PM + V +K++ Y
Sbjct: 7 EEDAAQLKLGPEFENEDMLTVSEAKILIETVLAQRARETNGEIPM---TDVMKKTVAYFN 63
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K +A IL + +FE LG LC E EEA ++PS+ + DD+
Sbjct: 64 VFARFKTAEATYACERILGN-RFHKFERAQLGTLCCEDAEEARTLIPSLANK---IDDQN 119
Query: 124 IEKMLNDLSLIKKFE 138
++ +L++LS ++KF+
Sbjct: 120 LQGILDELSTLRKFQ 134
>gi|390371162|dbj|GAB65043.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium cynomolgi
strain B]
Length = 132
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEK-SL 59
M+G E + L +G EF KCL CE+ +IL +QL+ TS N+ +Q K S
Sbjct: 1 MAGNEHGDVKNLDLGPEFKNCKCLNLCELQLILG---DQLRLTS--KRNEEAQTLIKSSF 55
Query: 60 QYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSI 112
Y +F+ KN ++ VR L R +L E+E+ +L NL P+TV+EA +PS+
Sbjct: 56 DYANKFATIKNRSSIVDVRTNLERIGELHEYEIAMLVNLLPKTVQEARYFIPSL 109
>gi|290996786|ref|XP_002680963.1| predicted protein [Naegleria gruberi]
gi|284094585|gb|EFC48219.1| predicted protein [Naegleria gruberi]
Length = 141
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 19/143 (13%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
+E+E + L++GD F +CL EVA +L K E+++Q D +N V F+KSL Y +
Sbjct: 5 DEQEVSERLELGD-FKDRQCLTISEVAQMLSKKKEEVEQEQTDYINDV---FDKSLTYAR 60
Query: 64 RFSRYKNPDAVRQVREILSRY-----------QLAEFELCVLGNLCPETVEEAIAMVPSI 112
RF + + ++ L R +L F++ L NL P EEA ++PS+
Sbjct: 61 RFGGGLSVETTMAIKSALGRATVTLKDSQERRKLQPFQIAQLANLMPGDAEEAATLIPSL 120
Query: 113 KTRGRAHDDEAIEKMLNDLSLIK 135
K A D+ I +L DL +K
Sbjct: 121 K----AFDETEIGNLLKDLESLK 139
>gi|449682668|ref|XP_004210141.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like,
partial [Hydra magnipapillata]
Length = 86
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE+A EL+ EF A+ L+N EV ++L+H+ Q + D+ ++S VF K+L Y +R
Sbjct: 14 EEEDATELQFPKEFESAETLLNSEVFMLLEHRKAQNESVDDE--QEMSDVFMKTLNYTQR 71
Query: 65 FSRYKNPDAVRQVR 78
FSR+KN + + QVR
Sbjct: 72 FSRFKNRETIAQVR 85
>gi|397516150|ref|XP_003828299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Pan
paniscus]
gi|403280272|ref|XP_003931649.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Saimiri
boliviensis boliviensis]
Length = 110
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQ 85
RFSR+KN + + VR + R++
Sbjct: 68 TARFSRFKNRETIASVRSLEGRFE 91
>gi|221053207|ref|XP_002257978.1| DNA-directed RNA polymerase I subunit [Plasmodium knowlesi strain
H]
gi|193807810|emb|CAQ38515.1| DNA-directed RNA polymerase I subunit, putative [Plasmodium
knowlesi strain H]
Length = 132
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEK-SL 59
M+G E + L +G EF KCL CE+ +IL +QL+ TS N+ +Q K S
Sbjct: 1 MAGNEHGDVKNLDLGPEFKNCKCLNLCELQLILG---DQLRLTS--KRNEEAQTLIKSSF 55
Query: 60 QYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSI 112
Y +F+ KN ++ VR L R +L E+E+ +L NL P+T +EA +PS+
Sbjct: 56 DYANKFATIKNRSSIVDVRTNLERIGELHEYEIAMLVNLLPKTAQEARYFIPSL 109
>gi|255088083|ref|XP_002505964.1| predicted protein [Micromonas sp. RCC299]
gi|226521235|gb|ACO67222.1| predicted protein [Micromonas sp. RCC299]
Length = 158
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 5 EEENAAELKIGDEFLKAK---CLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
EE++ LK GD K CL EV II + K + + ++ F+K+L+Y
Sbjct: 13 EEDDVTALKFGDLDRGDKFNGCLSMDEVRIIQESKINDDENDGVETSTTQTRTFQKTLEY 72
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLA-----EFELCVLGNLCPETVEEAIAMVPSIKTRG 116
+RFS + P+ + +RE+ A EFE NL P+ EA+ ++PS+ +
Sbjct: 73 TRRFSTVRTPEQTQMLRELYDEQTTAATNMHEFERAAFSNLQPQDAHEALTLIPSLGAKN 132
Query: 117 RAHDDEAIEKMLNDL----SLIKKFE 138
A +D E ++ + + I+KF+
Sbjct: 133 EAGEDRFTEGQISSIVEQSANIRKFD 158
>gi|430814348|emb|CCJ28407.1| unnamed protein product [Pneumocystis jirovecii]
Length = 168
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF A CL E IIL+ Q Q+ D + ++ V K+ Y+ F+R+K ++V
Sbjct: 49 EFTNATCLSVSEAKIILEAVLSQRQKELGDEI-VMTDVMRKTKDYLNIFARFKTQESVHA 107
Query: 77 VREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 135
+L L FE LG LC E EEA +VPS+ + DEA++ +L++LS ++
Sbjct: 108 AERVLRGDPDLHSFETAQLGTLCCEEAEEARTLVPSLADK---KSDEALQTLLDELSNLR 164
Query: 136 KFE 138
+F+
Sbjct: 165 RFQ 167
>gi|449297580|gb|EMC93598.1| hypothetical protein BAUCODRAFT_125443 [Baudoinia compniacensis
UAMH 10762]
Length = 161
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
SG+EE + LK+G EF CL E +L E+ + P Q + V+ K+ +Y
Sbjct: 23 SGDEEATSF-LKLG-EFDNTPCLSVAECNELLTRLAEKSGGGNTRPATQNNDVYLKTREY 80
Query: 62 VKRFSRYKNPDAVRQVREI----LSRYQ---LAEFELCVLGNLCPETVEEAIAMVPSIKT 114
V+ F+R+K+ V QV I L R + + FE L LC +T EEA ++PS++
Sbjct: 81 VESFARFKDSKTVTQVDAISSALLGRGKGEGVTNFERAQLATLCCDTAEEAKTLIPSLE- 139
Query: 115 RGRAHDDEAIEKMLNDLSLIKKF 137
G+ DDE +++ L+++S ++ F
Sbjct: 140 -GKLDDDE-LQRALDEISKLRDF 160
>gi|398409710|ref|XP_003856320.1| hypothetical protein MYCGRDRAFT_98518 [Zymoseptoria tritici IPO323]
gi|339476205|gb|EGP91296.1| hypothetical protein MYCGRDRAFT_98518 [Zymoseptoria tritici IPO323]
Length = 159
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 78/138 (56%), Gaps = 13/138 (9%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE L++GD + L EV ++L EQL++ + + + ++ K+ +Y K
Sbjct: 28 DEEATGNLRLGD-CANEQALSPAEVMLML----EQLERQPGNTHDPTNDIYYKTREYCKH 82
Query: 65 FSRYKNPDAVRQVR----EILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 119
F+R+K+ +++ QV E+ SR + EFE L LC +T EEA +VPS++ G+
Sbjct: 83 FARFKDNNSITQVNGISTELTSRGLGIVEFERAQLATLCCDTAEEARTLVPSLE--GKIG 140
Query: 120 DDEAIEKMLNDLSLIKKF 137
D+E ++ L+D+S ++ F
Sbjct: 141 DEE-LQAALDDISKLRDF 157
>gi|294899670|ref|XP_002776698.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239883872|gb|EER08514.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 153
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 75/143 (52%), Gaps = 15/143 (10%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
E+ +++AEL + KA+CL CEV +L Y +L ++ + +Q E+S ++
Sbjct: 2 EDHQDSAELSFDPVWQKAQCLNICEVEQLLRQPYARLVESGR--TSAKTQCLEQSYKHAL 59
Query: 64 RFSRYKNPDAVRQVREILSRYQ---------LAEFELCVLGNLCPETVEEAIAMVPSIKT 114
RFS+ +P+A+ ++R L ++ L FE+ L +L PE A +++PS+
Sbjct: 60 RFSKITDPEALTELRAALEDWEPPTAAQGGKLHSFEMAQLVSLLPENASVAKSLIPSMSR 119
Query: 115 RGRAHDDEAIEKMLNDLSLIKKF 137
+ D ++++L D++ K F
Sbjct: 120 ----YSDNDLDQLLADITTYKSF 138
>gi|296424796|ref|XP_002841932.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638184|emb|CAZ86123.1| unnamed protein product [Tuber melanosporum]
Length = 146
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 78/138 (56%), Gaps = 14/138 (10%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCE----VAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
+EE ELK+G EF L E + + +H+ EQ + D ++V K+ Q
Sbjct: 17 DEEAGTELKLG-EFQNVSSLTLSETKEVLTAVFNHRREQGKFKVPD-----NEVVTKTQQ 70
Query: 61 YVKRFSRYKNPDAVRQVREILS-RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 119
Y++ FSR+K ++V+ V IL+ + L FE LG LC +T +EA ++PSI+ +
Sbjct: 71 YLEVFSRFKQRESVQAVERILALQTDLVAFEKSQLGTLCCDTADEAKVLIPSIEGK---K 127
Query: 120 DDEAIEKMLNDLSLIKKF 137
DE ++++L++++ +++F
Sbjct: 128 SDEDLQELLDEITKLRQF 145
>gi|294945837|ref|XP_002784851.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239898093|gb|EER16647.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 153
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 75/143 (52%), Gaps = 15/143 (10%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
E+ +++AEL + KA+CL CEV +L Y +L ++ + +Q E+S ++
Sbjct: 2 EDHQDSAELNFDPVWQKAQCLNICEVEQLLRQPYARLVESGR--TSAKTQCLEQSYKHAL 59
Query: 64 RFSRYKNPDAVRQVREILSRYQ---------LAEFELCVLGNLCPETVEEAIAMVPSIKT 114
RFS+ +P+A+ ++R L ++ L FE+ L +L PE A +++PS+
Sbjct: 60 RFSKITDPEALTELRAALEDWEPPTAAQGGKLHSFEMAQLVSLLPENASVAKSLIPSMSR 119
Query: 115 RGRAHDDEAIEKMLNDLSLIKKF 137
+ D ++++L D++ K F
Sbjct: 120 ----YSDNDLDQLLADITTYKSF 138
>gi|62822328|gb|AAY14877.1| unknown [Homo sapiens]
Length = 84
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVR 78
RFSR+KN + + VR
Sbjct: 68 TARFSRFKNRETIASVR 84
>gi|28188691|gb|AAN46271.1| unknown protein [Arabidopsis thaliana]
gi|28188695|gb|AAN46273.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
A+C+M+CE ILD QL S+DP ++ +++SL YV+ Y NP +VR+V E
Sbjct: 70 AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRSLAYVESCVHYTNPQSVRKVLEP 129
Query: 81 LSRYQLAEFELCV 93
L Y +++ E+CV
Sbjct: 130 LKTYGISDGEMCV 142
>gi|392512812|emb|CAD26382.2| DNA-DIRECTED RNA POLYMERASE II 16KDA POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
Length = 120
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 15 GDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAV 74
G++ + +M E +L+ + E+ + D + S+VF +L Y+ F R K+
Sbjct: 7 GEDMKDSHPIMLAEARYLLEGQKERFRA---DFRSNASKVFRSTLGYLDDFCRIKDKSVA 63
Query: 75 RQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 127
+R LS E E+ + G+L P++VEEA ++VPS+ TR ++A+EK+
Sbjct: 64 EDLRTTLSGLGFGEVEIALFGSLFPQSVEEAKSLVPSLGTRDDDAINQAVEKI 116
>gi|83314554|ref|XP_730410.1| RNA polymerase Rpb4 [Plasmodium yoelii yoelii 17XNL]
gi|23490125|gb|EAA21975.1| RNA polymerase Rpb4 [Plasmodium yoelii yoelii]
Length = 152
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 12/133 (9%)
Query: 8 NAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQ-VFEKSLQYVKRFS 66
N +L +G EF KCL CE+ +IL +QL+ TS N+ +Q + S Y RF+
Sbjct: 9 NIQDLNLGPEFQNCKCLNLCELQLILG---DQLRLTS--KRNEDAQALIRSSFDYANRFA 63
Query: 67 RYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
KN ++ +R L R +L E+E+ +L NL P+T+ EA +PS+ ++E +
Sbjct: 64 TIKNRSSIVDIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSLIRL----NEETLN 119
Query: 126 KMLNDLSLIKKFE 138
+L L +IK+FE
Sbjct: 120 SILEHL-IIKQFE 131
>gi|302845327|ref|XP_002954202.1| hypothetical protein VOLCADRAFT_106291 [Volvox carteri f.
nagariensis]
gi|300260407|gb|EFJ44626.1| hypothetical protein VOLCADRAFT_106291 [Volvox carteri f.
nagariensis]
Length = 140
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 18 FLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQV 77
F A + N EVA IL Q ++ + P Q + +K+L+YV++F+ NP+AV+ +
Sbjct: 16 FEHAAVISNSEVATILSEYMRQRRE--EKPSFQPQPLVQKTLEYVQKFNCGTNPEAVQAM 73
Query: 78 REILSRYQLAEFELCVLGNLCPETVEEAIAMVPSI 112
R + + L FE ++ NL PE +EA ++PS+
Sbjct: 74 RNYMENFGLKPFEWGLIANLMPEDTDEANKLIPSL 108
>gi|28188699|gb|AAN46275.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
A+C+M+CE ILD QL S+DP ++ ++++L YV+ Y NP +VR+V E
Sbjct: 70 AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 129
Query: 81 LSRYQLAEFELCV 93
L Y +++ E+CV
Sbjct: 130 LKTYGISDGEMCV 142
>gi|28188687|gb|AAN46269.1| unknown protein [Arabidopsis thaliana]
gi|28188689|gb|AAN46270.1| unknown protein [Arabidopsis thaliana]
gi|28188697|gb|AAN46274.1| unknown protein [Arabidopsis thaliana]
gi|28188701|gb|AAN46276.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
A+C+M+CE ILD QL S+DP ++ ++++L YV+ Y NP +VR+V E
Sbjct: 70 AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 129
Query: 81 LSRYQLAEFELCV 93
L Y +++ E+CV
Sbjct: 130 LKTYGISDGEMCV 142
>gi|28188681|gb|AAN46266.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
A+C+M+CE ILD QL S+DP ++ ++++L YV+ Y NP +VR+V E
Sbjct: 70 AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 129
Query: 81 LSRYQLAEFELCV 93
L Y +++ E+CV
Sbjct: 130 LKTYGISDGEMCV 142
>gi|28188685|gb|AAN46268.1| unknown protein [Arabidopsis thaliana]
gi|28188693|gb|AAN46272.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
A+C+M+CE ILD QL S+DP ++ ++++L YV+ Y NP +VR+V E
Sbjct: 70 AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 129
Query: 81 LSRYQLAEFELCV 93
L Y +++ E+CV
Sbjct: 130 LKTYGISDGEMCV 142
>gi|19173403|ref|NP_597206.1| DNA-DIRECTED RNA POLYMERASE II 16KDA POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
gi|449328913|gb|AGE95189.1| DNA-directed RNA polymerase II 16kDa polypeptide [Encephalitozoon
cuniculi]
Length = 104
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 25 MNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRY 84
M E +L+ + E+ + D + S+VF +L Y+ F R K+ +R LS
Sbjct: 1 MLAEARYLLEGQKERFRA---DFRSNASKVFRSTLGYLDDFCRIKDKSVAEDLRTTLSGL 57
Query: 85 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 127
E E+ + G+L P++VEEA ++VPS+ TR ++A+EK+
Sbjct: 58 GFGEVEIALFGSLFPQSVEEAKSLVPSLGTRDDDAINQAVEKI 100
>gi|28188683|gb|AAN46267.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
A+C+M+CE ILD QL S+DP ++ ++++L YV+ Y NP +VR+V E
Sbjct: 70 AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 129
Query: 81 LSRYQLAEFELCV 93
L Y +++ E+CV
Sbjct: 130 LKTYGISDGEMCV 142
>gi|401827328|ref|XP_003887756.1| RNA polymerase II subunit Rpb4 [Encephalitozoon hellem ATCC 50504]
gi|392998763|gb|AFM98775.1| RNA polymerase II subunit Rpb4 [Encephalitozoon hellem ATCC 50504]
Length = 121
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 46 DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA 105
D + S++F +L Y+ F R K+ +R LS +E E+ + G+L P++VEEA
Sbjct: 35 DFRSNASKIFRSTLGYLDEFCRIKDKSVAEDLRTTLSALGFSELEIALFGSLFPQSVEEA 94
Query: 106 IAMVPSIKTRGRAHDDEAIEKM 127
++VPS++++G ++A+EK+
Sbjct: 95 KSLVPSLESKGDDVVEQAVEKI 116
>gi|68061507|ref|XP_672753.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium berghei
strain ANKA]
gi|68069061|ref|XP_676441.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490075|emb|CAI01817.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
berghei]
gi|56496141|emb|CAI00460.1| hypothetical protein PB000968.03.0 [Plasmodium berghei]
Length = 133
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 8 NAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQ-VFEKSLQYVKRFS 66
N +L +G EF KCL CE+ +IL +QL+ TS N+ +Q + S Y RF+
Sbjct: 9 NIQDLNLGPEFQNCKCLNLCELQLILG---DQLRLTSKR--NEDAQALIRSSFDYANRFA 63
Query: 67 RYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSI 112
KN ++ +R L R +L E+E+ +L NL P+T+ EA +PS+
Sbjct: 64 TIKNRSSIVDIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL 110
>gi|402077442|gb|EJT72791.1| hypothetical protein GGTG_09646 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 143
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILS-RYQLAEFELCVLGNLCPETVEEAIAMVP 110
++V K++ Y+ F+R+K + V V +LS R +L +FE LG+LCPET EEA ++P
Sbjct: 61 TEVLHKTIDYLDAFARFKQKENVEAVERLLSARPELTKFERAALGSLCPETAEEAKRLIP 120
Query: 111 SIK 113
S+K
Sbjct: 121 SLK 123
>gi|70923994|ref|XP_734917.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|70926439|ref|XP_735759.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium chabaudi
chabaudi]
gi|56508101|emb|CAH76309.1| hypothetical protein PC000412.01.0 [Plasmodium chabaudi chabaudi]
gi|56509703|emb|CAH86732.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
chabaudi chabaudi]
Length = 133
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 11 ELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQ-VFEKSLQYVKRFSRYK 69
+L +G EF KCL CE+ +IL +QL+ TS N+ +Q + S Y RF+ K
Sbjct: 12 DLNLGPEFQNCKCLNLCELQLILG---DQLRLTSKR--NEDAQALIRSSFDYANRFATIK 66
Query: 70 NPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSI 112
N ++ +R L R +L E+E+ +L NL P+T+ EA +PS+
Sbjct: 67 NRSSIVDIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL 110
>gi|345566765|gb|EGX49707.1| hypothetical protein AOL_s00078g196 [Arthrobotrys oligospora ATCC
24927]
Length = 158
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 6/134 (4%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE ELK+G EF L + E +++ + + + + ++V K+ Y+++
Sbjct: 28 DEEAGTELKLG-EFQNVTSLTHSEARLLIQAVLSHRAKGPNADIGE-TEVLIKTKDYLEQ 85
Query: 65 FSRYKNPDAVRQVREILS-RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + V V +L LA FE LG LC ET EEA ++PSI + DE
Sbjct: 86 FARFKKKENVSAVERLLQMEGGLASFEKSQLGTLCCETSEEAKTLIPSISDK---KSDED 142
Query: 124 IEKMLNDLSLIKKF 137
++++L++++ + F
Sbjct: 143 LQELLDEITKFRTF 156
>gi|156050981|ref|XP_001591452.1| hypothetical protein SS1G_08079 [Sclerotinia sclerotiorum 1980]
gi|154692478|gb|EDN92216.1| hypothetical protein SS1G_08079 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 146
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE + LK+G EF L + E A++++ + + D +++ K+ +Y+
Sbjct: 17 DEEASTVLKLG-EFQDVDALTHSEAALVINALVAK--RRGDRKNVNETEILSKTQEYLDH 73
Query: 65 FSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + V V +L SR +LA+FE LG+LC +T +EA ++PS++ + DD+
Sbjct: 74 FARFKRKENVEAVERLLGSRSELAKFERAQLGSLCCDTADEAKTLIPSLQ--DKISDDDL 131
Query: 124 IEKMLNDLSLIKKF 137
E +L++++ + F
Sbjct: 132 TE-LLDEITKLMGF 144
>gi|334349213|ref|XP_001369289.2| PREDICTED: hypothetical protein LOC100015134 [Monodelphis
domestica]
Length = 186
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 68 YKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 127
++N + + VR +L + +L +FEL L NLCPET EEA A++PS+ R +DE ++++
Sbjct: 118 FQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGR---LEDEDLQEV 174
Query: 128 LNDLSLIKKFE 138
L+D+ + F+
Sbjct: 175 LDDIQTKRSFQ 185
>gi|154296757|ref|XP_001548808.1| hypothetical protein BC1G_12406 [Botryotinia fuckeliana B05.10]
gi|347836043|emb|CCD50615.1| hypothetical protein [Botryotinia fuckeliana]
Length = 146
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE + LK+G EF L + E A++++ + + D +++ K+ +Y+
Sbjct: 17 DEEASTVLKLG-EFQDVDALTHSEAALVINALVAK--RRGDRKNVNETEILSKTQEYLDH 73
Query: 65 FSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + V V +L SR +LA+FE LG+LC +T +EA ++PS++ + DD+
Sbjct: 74 FARFKRKENVEAVERLLGSRGELAKFERAQLGSLCCDTADEAKTLIPSLQ--DKISDDDL 131
Query: 124 IEKMLNDLSLIKKF 137
E +L++++ + F
Sbjct: 132 TE-LLDEITKLMGF 144
>gi|399217783|emb|CCF74670.1| unnamed protein product [Babesia microti strain RI]
Length = 130
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 9/106 (8%)
Query: 10 AELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDP-MNQVSQVFEKSL-QYVKRFSR 67
+EL +G EF KCL CE+ +IL Q +P N+ +Q KS Y RFS+
Sbjct: 8 SELNLGPEFEDYKCLNLCELHLILG------DQIRLNPKRNEAAQQLLKSFYDYSGRFSK 61
Query: 68 YKNPDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSI 112
K +A+ +R L R L E+E+ L NL P++V+EA +++PSI
Sbjct: 62 LKYRNAIVDIRTSLEREGGLHEYEMASLVNLLPKSVQEAKSLIPSI 107
>gi|340992794|gb|EGS23349.1| hypothetical protein CTHT_0010170 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 147
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 78/129 (60%), Gaps = 7/129 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDD-PMNQVSQVFEKSLQYVKR 64
EE+AA+LK+G EF L E +++++ + ++ + P+N+ + V K+L+Y+
Sbjct: 19 EEDAAKLKLG-EFQDVDTLTLSEASLVINALIAKRRKDAKGRPINE-TDVLIKTLEYLDA 76
Query: 65 FSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + V V +LS + +L +FE +G+LC ++ +E +VPSI + DE
Sbjct: 77 FARFKQKENVEAVERLLSAHKELTKFERAQIGSLCCDSADECKTLVPSIADK---ISDED 133
Query: 124 IEKMLNDLS 132
++++L++++
Sbjct: 134 LQELLDEMA 142
>gi|189204019|ref|XP_001938345.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985444|gb|EDU50932.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 175
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 4 EEEENAAELKIGD-EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPM----NQVSQVFEKS 58
+EEE +E+K+GD E + A + + H+ + + ++P+ + S V
Sbjct: 32 QEEEIGSEIKLGDFEDVHALSVSEARAVVTAVHEARKKKDPENNPLRDRIHNDSGVIASF 91
Query: 59 LQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR 117
L Y+ F+RYK D++ + + + +++ E +LG L P+T EEA ++PS+K
Sbjct: 92 LDYLDNFARYKEEDSLHSIAALFDAHPEISVVEKALLGTLTPDTAEEATTLIPSLKM--- 148
Query: 118 AHDDEAIEKMLNDLSLIKKFE 138
D++ ++ +L++L+ +++ E
Sbjct: 149 --DEDELQLILDELNKMRELE 167
>gi|451849491|gb|EMD62794.1| hypothetical protein COCSADRAFT_92778 [Cochliobolus sativus ND90Pr]
Length = 177
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 4 EEEENAAELKIGD-EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQV----SQVFEKS 58
+EEE +E+K+GD E + A + + H+ + + ++P+ S +
Sbjct: 33 QEEEMGSEIKLGDFEDVHALSVSEARAVVTAVHEARKKKDPENNPLRDRIYNDSITITQF 92
Query: 59 LQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR 117
L Y+ F+RYK D++ + + + +++ E +LG L P+T EEAI ++PS+K
Sbjct: 93 LDYLDNFARYKEEDSLHSIAALFDAHPEISVVEKALLGTLTPDTAEEAITLIPSLKM--- 149
Query: 118 AHDDEAIEKMLNDLSLIKKFE 138
D++ ++ +L++L+ +++ E
Sbjct: 150 --DEDELQLILDELNKMRELE 168
>gi|406867922|gb|EKD20959.1| RNA polymerase Rpb4 family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 146
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE ++ELK+G EF L + E A++++ + ++ +N+ +++ K+ Y+
Sbjct: 17 DEEASSELKLG-EFQDVDALTHSEAALVINALVTK-RRMDKKNVNE-TELLIKTTDYLDH 73
Query: 65 FSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
F+R+K + V V +LS + +LA+FE LG+LC +T EEA ++PS++ +
Sbjct: 74 FARFKRKENVEAVERLLSAHKELAKFERAQLGSLCCDTSEEAKTLIPSLQDK 125
>gi|403221954|dbj|BAM40086.1| RNA polymerase subunit RPB4-like protein [Theileria orientalis
strain Shintoku]
Length = 130
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 8 NAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSR 67
+ ++ ++ EF +KCL CE+ +IL + +D + Q + S +Y RFS
Sbjct: 7 DPSKFELDPEFKNSKCLNLCELHLILGDQLRLHHNRNDTAI----QFIKTSHEYASRFSI 62
Query: 68 YKNPDAVRQVREILSRYQL-AEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
K +A+ +R + R L EFE+ L NL P++VEEA +++PS+ R DD+
Sbjct: 63 LKCRNAIVDIRTTIERDGLLHEFEMASLVNLLPKSVEEAKSLIPSL---SRISDDK 115
>gi|396081878|gb|AFN83492.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon romaleae SJ-2008]
Length = 104
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 25 MNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRY 84
M E +L+ + E+ + D + S++F +L Y+ F R K+ +R S
Sbjct: 1 MLSEARYLLEGQKERFRA---DFRSNASKIFRSTLGYLDEFCRIKDKSVAEDLRTTFSGL 57
Query: 85 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 127
+E E+ +LG+L P++VEEA ++PS+ ++ +A+EK+
Sbjct: 58 GFSELEIALLGSLFPQSVEEAKTLIPSLASKSDDAIGQAVEKI 100
>gi|367020396|ref|XP_003659483.1| hypothetical protein MYCTH_110536 [Myceliophthora thermophila ATCC
42464]
gi|347006750|gb|AEO54238.1| hypothetical protein MYCTH_110536 [Myceliophthora thermophila ATCC
42464]
Length = 146
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE A LK+G EF L E +++LD + ++ D + V K+L Y+
Sbjct: 19 EEEAGAVLKLG-EFENVDTLTLSEASLVLDALLTKRRKDRKD--RNETDVLNKTLDYLDA 75
Query: 65 FSRYKNPDAVRQVREILS-RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + V V +LS R +L +FE +G+LC + +E M+PS+ + DE
Sbjct: 76 FARFKEKENVEAVERLLSARKELTKFERAQIGSLCCDGADECKTMIPSLADK---ISDED 132
Query: 124 IEKMLNDLS 132
++++L++++
Sbjct: 133 LQELLDEMA 141
>gi|429327486|gb|AFZ79246.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Babesia
equi]
Length = 130
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFS 66
+++ + + EF +KCL CE+ +IL + Q +D+ + Q+ + S +Y RF+
Sbjct: 6 QDSNRIDLDPEFKNSKCLNLCELHLILGDQLRLHQNRNDNAL----QLIKASHEYASRFA 61
Query: 67 RYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSI 112
K +A+ VR + R L EFE+ + NL P++V+EA +++PS+
Sbjct: 62 ILKYRNAIVDVRTTIERDGCLHEFEMASIVNLLPKSVDEAKSLIPSL 108
>gi|28188703|gb|AAN46277.1| unknown protein [Arabidopsis lyrata]
gi|28188705|gb|AAN46278.1| unknown protein [Arabidopsis lyrata]
Length = 142
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
A+C+M+CE ILD L S+DP ++ ++++L YV Y NP +VR+V E
Sbjct: 70 AECMMDCEAFQILDGIKGHLVGLSEDPSIKIPVSYDRALAYVDSCVHYSNPQSVRKVLEP 129
Query: 81 LSRYQLAEFELCV 93
L + +++ E+CV
Sbjct: 130 LKTHGVSDGEMCV 142
>gi|336272363|ref|XP_003350938.1| hypothetical protein SMAC_04242 [Sordaria macrospora k-hell]
gi|380090705|emb|CCC04875.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 146
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 7/129 (5%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE +A LK+G EF L E +++++ + ++ D + V K+L Y+
Sbjct: 19 EEEASAVLKLG-EFNDVDTLTLSEASLVINALMTKRRKDRKD--RNETDVLNKTLDYLDA 75
Query: 65 FSRYKNPDAVRQVREILS-RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + V V +LS R +L +FE +G+LC ++ +E ++PS+ + DDE
Sbjct: 76 FARFKQKENVEAVERLLSARKELTKFERAQIGSLCCDSADECKTLIPSLADK---IDDEN 132
Query: 124 IEKMLNDLS 132
++++L++++
Sbjct: 133 LQELLDEMA 141
>gi|116206890|ref|XP_001229254.1| hypothetical protein CHGG_02738 [Chaetomium globosum CBS 148.51]
gi|88183335|gb|EAQ90803.1| hypothetical protein CHGG_02738 [Chaetomium globosum CBS 148.51]
Length = 146
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE A LK+G EF L E ++++D L++ D + V K+L Y+
Sbjct: 19 EEEAGAVLKLG-EFEGVDTLTLSEASLVIDALM--LKRRKDRKDRNETDVLNKTLDYLDA 75
Query: 65 FSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + V V +LS + +L +FE +G+LC ++ +E M+PS+ + DE
Sbjct: 76 FARFKEKENVEAVERLLSSHKELTKFERAHIGSLCCDSADECKTMIPSLADK---ISDER 132
Query: 124 IEKMLNDLS 132
++++L++++
Sbjct: 133 LQELLDEMA 141
>gi|301118218|ref|XP_002906837.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108186|gb|EEY66238.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 111
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 17/106 (16%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
E ++AAEL +G+EF CL N EVAIIL E+ Q ++ + VF+K+ YV R
Sbjct: 10 ESKDAAELNLGEEFENDTCLSNAEVAIIL----EKQQGNYNEQKKMFTGVFKKTQSYVTR 65
Query: 65 FSRYKNP----DAVRQVREILSR---------YQLAEFELCVLGNL 97
F+ K+P AV ++R+ L ++L EFE+ NL
Sbjct: 66 FTGTKDPVANQAAVIEIRDALQSHSFEHDDEVHRLEEFEIASSSNL 111
>gi|296204310|ref|XP_002749270.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Callithrix jacchus]
Length = 116
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 16/98 (16%)
Query: 54 VFEKSLQYVKRFSR------------YKNPDAVRQVR-EILSRYQLAEFELCVLGNLCPE 100
+F K R SR + +P+A Q R +L + +L +FEL L NLCPE
Sbjct: 21 IFPKGWARAARLSRATLRGPRRPGVSHASPEAWPQRRLSLLLQKKLHKFELACLANLCPE 80
Query: 101 TVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
T EE+ A++PS++ R +DE ++++L+D+ + F+
Sbjct: 81 TAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 115
>gi|47028255|gb|AAT09060.1| RNA polymerase 2 15.9 kDa subunit [Bigelowiella natans]
Length = 172
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 22/139 (15%)
Query: 8 NAAELKIGDEFLKAKCLMNCEVAIILDH--KYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
+A++LK+G EF +A CL N EVA+ILD K E L + D + + +L YV +F
Sbjct: 38 DASQLKLGKEFHEAHCLWNAEVAVILDTVIKRETLSDRNKD-------LVKTTLDYVNKF 90
Query: 66 SRYKNPDAVRQVREILS------------RYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113
+ + ++ RE + + +FE+ + N EEA ++P++K
Sbjct: 91 KYFPTKEMAKKAREYVEDNTKPDRKGGKPGIDIEQFEVAEMANTGIFQAEEARELLPTVK 150
Query: 114 TRGRAHDDEAIEKMLNDLS 132
+ +DE +E L+ L+
Sbjct: 151 EKFEGREDE-LEDFLSGLT 168
>gi|303390270|ref|XP_003073366.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon intestinalis ATCC 50506]
gi|303302512|gb|ADM12006.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon intestinalis ATCC 50506]
Length = 104
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 25 MNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRY 84
M E +L+ + E+ + D + S++F +L Y+ F R K+ +R S
Sbjct: 1 MLAEARYLLEGQKERFRA---DFRSNASKIFRSTLGYLDEFCRIKDKSVAEDLRTTFSGL 57
Query: 85 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 127
+E E+ +LG+L P++VEEA +++PS+ ++ A+EK+
Sbjct: 58 GFSEVEIALLGSLFPQSVEEAKSLIPSLASKDDDTISHAVEKI 100
>gi|428183244|gb|EKX52102.1| DNA-directed RNA polymerase II subunit, RPB4 [Guillardia theta
CCMP2712]
Length = 141
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
EE+E+ L G +F A+ ++N EV +I+D + + D M+ S++ + + V
Sbjct: 13 EEKEDITNLYFGADFEDAEAMLNAEVKVIID----SINEEKDLEMSDWSELMQNTTSNVS 68
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F R+++ ++ ++ L FE GNL P +EA ++PS+ TR D+A
Sbjct: 69 TFGRFQDKTSIATCKQELVDLGCHTFEAACFGNLQPANADEAKRLIPSL-TR---FTDDA 124
Query: 124 IEKM 127
+E M
Sbjct: 125 VEMM 128
>gi|392576163|gb|EIW69294.1| hypothetical protein TREMEDRAFT_62158 [Tremella mesenterica DSM
1558]
Length = 156
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE+A +L+ GD + L +V +L E ++ D P ++V++ +++YV F
Sbjct: 24 EEDATKLQFGD-LADGEALTLTDVNTLL----EAARKAPDVPPPPDNKVYKSTVEYVSTF 78
Query: 66 SRYKNPDAVRQVREILSRYQ--LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
S PDAV +R+ + + L +FE+ + L PE +E AIA++PS++ + E
Sbjct: 79 SN-ATPDAVESMRQAFAAHPGFLNKFEIAQIMYLRPERIEVAIALIPSLERYSQGDAKET 137
Query: 124 -IEKMLNDLSLIKKF 137
++++L+D+ I ++
Sbjct: 138 LLQQLLDDVRNISRY 152
>gi|124800957|ref|XP_001349565.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
falciparum 3D7]
gi|3845133|gb|AAC71838.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
falciparum 3D7]
Length = 132
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKS-L 59
M+ + L +G +F KCL CE+ +IL +QL+ TS N+ +Q KS
Sbjct: 1 MANNINGDIKNLDLGPDFKNCKCLNLCELQLILG---DQLRLTS--KRNEEAQALIKSSY 55
Query: 60 QYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSI 112
Y +F+ KN ++ +R L R L E+E+ +L NL P+T+ EA ++PS+
Sbjct: 56 DYANKFAAIKNRSSIVDIRTNLERIGDLHEYEIAMLVNLLPKTILEARYLIPSL 109
>gi|320592320|gb|EFX04759.1| DNA directed RNA polymerase 2 polypeptide d [Grosmannia clavigera
kw1407]
Length = 143
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVP 110
++V K++ Y+ F+R+K + V V +L S +L +FE LG+LCPE VEEA ++P
Sbjct: 61 TEVLTKTVDYLDAFARFKRKENVEAVERLLASHTELTKFERAALGSLCPEGVEEAKTLIP 120
Query: 111 SIKTR 115
S+ +
Sbjct: 121 SLTNK 125
>gi|255716330|ref|XP_002554446.1| KLTH0F05544p [Lachancea thermotolerans]
gi|238935829|emb|CAR24009.1| KLTH0F05544p [Lachancea thermotolerans CBS 6340]
Length = 197
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS 111
+Q ++++ Y+ FSR+K+ + V V ++L L FE+ LG+L E +EA ++PS
Sbjct: 114 NQALKQTMVYLTNFSRFKDQETVTAVTQLLQSTNLHPFEIAQLGSLSCEDADEAKTLIPS 173
Query: 112 IKTRGRAHDDEAIEKMLNDLS 132
+ G DE +E++L +LS
Sbjct: 174 L---GNKISDEDLERILKELS 191
>gi|212546661|ref|XP_002153484.1| polymerase (RNA) II (DNA directed) polypeptide D [Talaromyces
marneffei ATCC 18224]
gi|210065004|gb|EEA19099.1| polymerase (RNA) II (DNA directed) polypeptide D [Talaromyces
marneffei ATCC 18224]
Length = 150
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 13/135 (9%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTS---DDPMNQVSQVFEKSLQYVK 63
E A+ LK+GD+ L E ++++ E +++ D+P N K+L Y++
Sbjct: 23 EAASTLKLGDD-QNTHTLSLSEARLVINKVLENKRRSGKKYDEPEN-----LTKTLDYLE 76
Query: 64 RFSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
FSR+K+ + ++ V +L S +L FE LG+LC + EEA +++PS++ + D
Sbjct: 77 VFSRFKDEENIKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQNKISDID-- 134
Query: 123 AIEKMLNDLSLIKKF 137
++++L++L+ ++ F
Sbjct: 135 -LQELLDELTKLRNF 148
>gi|50302645|ref|XP_451258.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640389|emb|CAH02846.1| KLLA0A05797p [Kluyveromyces lactis]
Length = 200
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS 111
+Q ++++ Y+ FSR+++ + V V ++LS L FE+ LG+L E +EA ++PS
Sbjct: 117 NQALKQTMIYLTNFSRFRDQETVTAVSQLLSSTGLHPFEVAQLGSLSCEDADEAKTLIPS 176
Query: 112 IKTRGRAHDDEAIEKMLNDLS 132
+ T+ DE +E++L +LS
Sbjct: 177 LGTK---ISDEDLERILKELS 194
>gi|346975025|gb|EGY18477.1| hypothetical protein VDAG_08811 [Verticillium dahliae VdLs.17]
Length = 160
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 54/82 (65%), Gaps = 4/82 (4%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVP 110
+++ ++L Y+ FSR++ + V V +LS + QLA+FE +G+LC ET EEA ++P
Sbjct: 77 TEMLTQTLNYLDAFSRFRQKENVEAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIP 136
Query: 111 SIKTRGRAHDDEAIEKMLNDLS 132
S++ + DE ++++L+++S
Sbjct: 137 SLQDK---ITDEDLQELLDEIS 155
>gi|302412369|ref|XP_003004017.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261356593|gb|EEY19021.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 160
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 54/82 (65%), Gaps = 4/82 (4%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVP 110
+++ ++L Y+ FSR++ + V V +LS + QLA+FE +G+LC ET EEA ++P
Sbjct: 77 TEMLTQTLNYLDAFSRFRQKENVEAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIP 136
Query: 111 SIKTRGRAHDDEAIEKMLNDLS 132
S++ + DE ++++L+++S
Sbjct: 137 SLQDK---ITDEDLQELLDEIS 155
>gi|169602343|ref|XP_001794593.1| hypothetical protein SNOG_04169 [Phaeosphaeria nodorum SN15]
gi|111066809|gb|EAT87929.1| hypothetical protein SNOG_04169 [Phaeosphaeria nodorum SN15]
Length = 177
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 73/141 (51%), Gaps = 9/141 (6%)
Query: 4 EEEENAAELKIGD-EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPM----NQVSQVFEKS 58
+EEE E+K+GD E + A + + H+ + + ++P+ + V
Sbjct: 32 QEEEMGNEIKLGDFEDVHALSVSEARAVVTAVHEARRKKDPENNPLRDRIHNDQPVIMHF 91
Query: 59 LQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR 117
L+Y+ FSRYK +++ + + + +L E +LG L P+T +EA ++PS+ ++
Sbjct: 92 LEYLDNFSRYKQEESLHSIAALFDTHPELTTVEKALLGTLTPDTADEATTLIPSLASKM- 150
Query: 118 AHDDEAIEKMLNDLSLIKKFE 138
D + ++ +L++L+ ++ +
Sbjct: 151 --DSDTLQPILDELTKMRMLD 169
>gi|350593475|ref|XP_003483693.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Sus
scrofa]
Length = 127
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 41 QQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR-----EILSRYQLAEFELCVLG 95
+Q PMN + + S ++ + D + +V+ +L + +L +FEL L
Sbjct: 27 EQPPSSPMNHRAHAYASSRIGIRYYVTRVWADGLFRVQTAHVCSLLLQKKLHKFELACLA 86
Query: 96 NLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
NLCPET EE+ A++PS++ R +DE ++++L+D+ + F+
Sbjct: 87 NLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 126
>gi|358394175|gb|EHK43576.1| hypothetical protein TRIATDRAFT_148798 [Trichoderma atroviride IMI
206040]
Length = 142
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE +A L +G EF L E A++L+ + + +D +++ ++L Y+ F
Sbjct: 16 EEASASLNLG-EFQHVDTLTLSEAALVLNALVAK--RRNDRKNVNETEMLNQTLNYLDHF 72
Query: 66 SRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
+R+ + V V +LS ++ LA+FE LG+LC E +EA ++PS+ + + DE +
Sbjct: 73 ARFTQKENVEAVERLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIK---DEDL 129
Query: 125 EKMLNDLS 132
+ +L+++S
Sbjct: 130 QDLLDEIS 137
>gi|322708586|gb|EFZ00163.1| RNA polymerase Rpb4 family protein [Metarhizium anisopliae ARSEF
23]
Length = 143
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE +A L +G EF L E A++L+ + + +D +++ ++L Y+ F
Sbjct: 17 EEASATLNLG-EFQNVDTLTLSEAALVLNALVAK--RRNDRKNVNETEMLNQTLNYLDHF 73
Query: 66 SRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
+R+ + V V +LS ++ LA+FE LG+LC E +EA ++PS+ + + DE +
Sbjct: 74 ARFTQKENVEAVERLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIK---DEDL 130
Query: 125 EKMLNDLS 132
+ +L+++S
Sbjct: 131 QDLLDEIS 138
>gi|46403032|gb|AAS92528.1| hypothetical protein [Cryptococcus gattii]
Length = 147
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE+A +L+ GD F + + L EVA +L + +Q + P ++V++ + YV
Sbjct: 14 QEEDATKLQFGD-FAEGEALTLTEVATLL----KAARQAPNVPPAPDNKVYQSTTDYVNE 68
Query: 65 FSRYKNPDAVRQVREILSRYQ--LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
FS D +R LS L +FE+ + +L PE VE A+A++PS++ + ++E
Sbjct: 69 FSN-TTMDVSDSMRTALSARHGFLNKFEIAQIMSLRPERVEVAVALIPSLERYAQGDENE 127
Query: 123 A-IEKMLNDLSLIKKF 137
A ++ +L+D+ + ++
Sbjct: 128 AQLQSLLDDVRSMVRY 143
>gi|358387427|gb|EHK25022.1| hypothetical protein TRIVIDRAFT_30210 [Trichoderma virens Gv29-8]
Length = 142
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE +A L +G EF L E A++L+ + + +D +++ ++L Y+ F
Sbjct: 16 EEASATLNLG-EFQHVDTLTLSEAALVLNALVAK--RRNDRKNVNETEMLNQTLNYLDHF 72
Query: 66 SRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
+R+ + V V +LS ++ LA+FE LG+LC E +EA ++PS+ + + DE +
Sbjct: 73 ARFTQKENVEAVERLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIK---DEDL 129
Query: 125 EKMLNDLS 132
+ +L+++S
Sbjct: 130 QDLLDEIS 137
>gi|322696884|gb|EFY88670.1| RNA polymerase Rpb4 family protein [Metarhizium acridum CQMa 102]
Length = 143
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 73/128 (57%), Gaps = 7/128 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE +A L +G EF L E A++L+ + + + +N+ +++ ++L Y+ F
Sbjct: 17 EEASATLNLG-EFQDVDTLTLSEAALVLNALVTKRRNDRKN-INE-TEMLNQTLNYLDHF 73
Query: 66 SRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
+R+ + V V +LS ++ LA+FE LG+LC E +EA ++PS+ + + DE +
Sbjct: 74 ARFTQKENVEAVERLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIK---DEDL 130
Query: 125 EKMLNDLS 132
+ +L+++S
Sbjct: 131 QDLLDEIS 138
>gi|219121231|ref|XP_002185843.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582692|gb|ACI65313.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 30/142 (21%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMN---QVSQVFEKSLQYVK 63
EN AEL+ G EF L N +VA+I LQ +++ +N ++++V+ K+ +YV
Sbjct: 17 ENVAELQFGPEFEDIHILSNAQVAVI-------LQVSANSAVNRDEELNEVYRKTQKYVN 69
Query: 64 RFSRYKNP--------DAVRQVREILSRY----------QLAEFELCVLGNLCPET--VE 103
RF+ NP D + +++ LS + +L E+ L NL VE
Sbjct: 70 RFNTMTNPEKEHQELVDELDNLQDALSTFRKETDDGDELELHGAEVAALMNLVATDTLVE 129
Query: 104 EAIAMVPSIKTRGRAHDDEAIE 125
EA+A++PS+ A DE ++
Sbjct: 130 EAVALIPSLSRFPEAAIDEILD 151
>gi|85111201|ref|XP_963824.1| hypothetical protein NCU09378 [Neurospora crassa OR74A]
gi|28925563|gb|EAA34588.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|350286313|gb|EGZ67561.1| hypothetical protein NEUTE2DRAFT_153094 [Neurospora tetrasperma
FGSC 2509]
Length = 146
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 7/129 (5%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE +A LK+G EF L E +++++ + ++ D + V K+L Y+
Sbjct: 19 EEEASAVLKLG-EFQDVDTLTLSEASLVINALMTKRRKDRKD--RNETDVLNKTLDYLDA 75
Query: 65 FSRYKNPDAVRQVREILS-RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + V V +LS R +L +FE +G+LC ++ +E ++PS+ + DDE
Sbjct: 76 FARFKQKENVEAVERLLSARKELTKFERAQIGSLCCDSADECKTLIPSLA--DKITDDE- 132
Query: 124 IEKMLNDLS 132
++++L++++
Sbjct: 133 LQELLDEMA 141
>gi|429856634|gb|ELA31534.1| polymerase II polypeptide d [Colletotrichum gloeosporioides Nara
gc5]
Length = 144
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVP 110
+++ ++L Y+ FSR++ + V V +LS + QLA+FE +G+LC ET EEA ++P
Sbjct: 61 TEMLTQTLNYLDAFSRFRQKENVEAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIP 120
Query: 111 SIKTRGRAHDDEAIEKMLNDLS 132
S++ + D+ ++ +L+++S
Sbjct: 121 SLQDKI---SDDDLQILLDEIS 139
>gi|310793276|gb|EFQ28737.1| RNA polymerase Rpb4 [Glomerella graminicola M1.001]
Length = 144
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVP 110
+++ ++L Y+ FSR++ + V V +LS + QLA+FE +G+LC ET EEA ++P
Sbjct: 61 TEMLTQTLNYLDAFSRFRQKENVEAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIP 120
Query: 111 SIKTRGRAHDDEAIEKMLNDLS 132
S++ + D+ ++ +L+++S
Sbjct: 121 SLQDKI---SDDDLQILLDEIS 139
>gi|156088653|ref|XP_001611733.1| RNA polymerase Rpb4 family protein [Babesia bovis]
gi|154798987|gb|EDO08165.1| RNA polymerase Rpb4 family protein [Babesia bovis]
Length = 129
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 11 ELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKN 70
++++ +E AKCL CE+ +IL + +LQ ++ Q+ + S +Y RF+ K
Sbjct: 9 QVEVDEELKNAKCLNLCELHLILGDQL-RLQHKRNE---NAKQLIKTSHEYASRFAILKF 64
Query: 71 PDAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSI 112
A+ +R + R L EFE+ + NL P++V+EA +++PS+
Sbjct: 65 RSAIVDIRTTIEREGSLHEFEMASVVNLLPKSVDEAKSLIPSL 107
>gi|380495044|emb|CCF32692.1| RNA polymerase Rpb4 [Colletotrichum higginsianum]
Length = 144
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVP 110
+++ ++L Y+ FSR++ + V V +LS + QLA+FE +G+LC ET EEA ++P
Sbjct: 61 TEMLTQTLNYLDAFSRFRQKENVEAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIP 120
Query: 111 SIKTRGRAHDDEAIEKMLNDLS 132
S++ + D+ ++ +L+++S
Sbjct: 121 SLQDKI---SDDDLQILLDEIS 139
>gi|298709441|emb|CBJ31347.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 151
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 26/151 (17%)
Query: 4 EEEENAAELKIGDEFLK--AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
++EENA L+ G E K CL N EV+++L+ +Q + +N V+ F K++ Y
Sbjct: 5 DDEENANLLQFGPEHAKDDMSCLSNAEVSVVLE---KQRINYEEKDIN-VTPAFSKTMSY 60
Query: 62 VKRFSRYKNP---DAVRQVREILSRYQ---------LAEFELCVLGNL--CPETVEEAIA 107
VKRF A ++RE L +++ L +FE+ + NL VEE +A
Sbjct: 61 VKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLA 120
Query: 108 MVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
++PS+ R D E I L++++K +
Sbjct: 121 LIPSLGARLTEEDLENI------LAIVRKHQ 145
>gi|396473070|ref|XP_003839260.1| hypothetical protein LEMA_P029330.1 [Leptosphaeria maculans JN3]
gi|312215829|emb|CBX95781.1| hypothetical protein LEMA_P029330.1 [Leptosphaeria maculans JN3]
Length = 389
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 4 EEEENAAELKIGD-EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQV----SQVFEKS 58
+EEE E+++GD E + A + + H+ + + ++P+ Q +
Sbjct: 234 QEEEMGTEIRLGDFEDVHALSVSEARAVVTAVHEARKKKDPENNPLRDRIYNDQQTITQF 293
Query: 59 LQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVL-------GNLCPETVEEAIAMVP 110
L Y++ FSR+K +++ + + + +L+ E +L G L PET EEA ++P
Sbjct: 294 LDYLENFSRFKEEESLHSIAALFDTHPELSTVEKAMLAQEADKPGTLTPETAEEATYLIP 353
Query: 111 SIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
S+ T+ A D + I LN L +++ E
Sbjct: 354 SLATKMHADDLQPILDELNKLRMLEHVE 381
>gi|45185936|ref|NP_983652.1| ACR250Wp [Ashbya gossypii ATCC 10895]
gi|44981726|gb|AAS51476.1| ACR250Wp [Ashbya gossypii ATCC 10895]
gi|374106859|gb|AEY95768.1| FACR250Wp [Ashbya gossypii FDAG1]
Length = 192
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS 111
+Q ++++ Y+ F+R+++ + V V ++L+ L FE+ LG+L E +EA +VPS
Sbjct: 109 NQALKQTMVYLTNFARFRDQETVTAVTQLLASTGLHPFEIAQLGSLACEDADEAKTLVPS 168
Query: 112 IKTRGRAHDDEAIEKMLNDLS 132
+ G DE +E++L +LS
Sbjct: 169 L---GNKISDEDLERILKELS 186
>gi|400601404|gb|EJP69047.1| RNA polymerase Rpb4 [Beauveria bassiana ARSEF 2860]
Length = 138
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE +A L +G EF L E +++L+ + + +D +++ ++L Y+ F
Sbjct: 12 EEASATLNLG-EFNNVDTLTLSEASLVLNALVAK--RRNDRKNVNETEMLNQTLSYLDHF 68
Query: 66 SRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
+R+ + V V +LS ++ LA+FE LG+LC ET +EA ++PS+ + DE +
Sbjct: 69 ARFTQKENVEAVERLLSTHKDLAKFERAQLGSLCCETADEAKTLIPSLADK---ISDEDL 125
Query: 125 EKMLNDLS 132
+++L ++S
Sbjct: 126 KELLEEIS 133
>gi|70950532|ref|XP_744582.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524593|emb|CAH80182.1| hypothetical protein PC000766.03.0 [Plasmodium chabaudi chabaudi]
Length = 116
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQ-VFEKSLQYVKRFSRYKNPDAVR 75
EF KCL CE+ +IL +QL+ TS N+ +Q + S Y RF+ KN ++
Sbjct: 1 EFQNCKCLNLCELQLILG---DQLRLTSKR--NEDAQALIRSSFDYANRFATIKNRSSIV 55
Query: 76 QVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSI 112
+R L R +L E+E+ +L NL P+T+ EA +PS+
Sbjct: 56 DIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL 93
>gi|315046530|ref|XP_003172640.1| polymerase II polypeptide D [Arthroderma gypseum CBS 118893]
gi|311343026|gb|EFR02229.1| polymerase II polypeptide D [Arthroderma gypseum CBS 118893]
Length = 150
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFS 66
E A+LK+G EF L E ++++ K L++ D + + K+ Y++ F+
Sbjct: 23 EATAQLKLG-EFQHVPTLSLSEARLVIN-KVLDLRRKGDSKFEE-RETLVKTQDYLEVFA 79
Query: 67 RYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
R+K + + V +LS + +L FE LG+LC + EEA +++PSI G D ++
Sbjct: 80 RFKEKENIEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSI---GNKISDADLQ 136
Query: 126 KMLNDLSLIKKF 137
++L++L+ ++ F
Sbjct: 137 ELLDELTKLRNF 148
>gi|330918567|ref|XP_003298271.1| hypothetical protein PTT_08920 [Pyrenophora teres f. teres 0-1]
gi|311328637|gb|EFQ93641.1| hypothetical protein PTT_08920 [Pyrenophora teres f. teres 0-1]
Length = 184
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 77/149 (51%), Gaps = 19/149 (12%)
Query: 4 EEEENAAELKIGD-EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPM--------NQVSQV 54
+EEE +E+K+GD E + A + + H+ + + ++P+ +V+ V
Sbjct: 32 QEEEIGSEIKLGDFEDVHALSVSEARAVVTAVHEARKKKDPENNPLRDRIHNDSGRVAPV 91
Query: 55 ----FEKSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMV 109
L Y+ F+RYK D++ + + + +++ E +LG L P+T EEA ++
Sbjct: 92 QPLVIASFLDYLDNFARYKEEDSLHSIAALFDAHPEISVVEKALLGTLTPDTAEEATTLI 151
Query: 110 PSIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
PS+K D++ ++ +L++L+ +++ E
Sbjct: 152 PSLKM-----DEDELQLILDELNKMRELE 175
>gi|119195963|ref|XP_001248585.1| hypothetical protein CIMG_02356 [Coccidioides immitis RS]
gi|392862210|gb|EAS37168.2| polymerase II polypeptide D [Coccidioides immitis RS]
Length = 149
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFS 66
E +++LK+G EF L E ++++ K L++ S++ + + K+ Y++ F+
Sbjct: 22 EASSQLKLG-EFQNVPTLSLSEARLVIN-KVLDLRKKSNNKYEERETLI-KTQDYLEVFA 78
Query: 67 RYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
R+K + + V +LS + +L FE LG+LC + EEA A++PSI G D ++
Sbjct: 79 RFKEKENIEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKALIPSI---GNKISDADLQ 135
Query: 126 KMLNDLSLIKKF 137
++L++L+ ++ F
Sbjct: 136 ELLDELTKLRNF 147
>gi|320040371|gb|EFW22304.1| RNA polymerase Rpb4 [Coccidioides posadasii str. Silveira]
Length = 149
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFS 66
E +++LK+G EF L E ++++ K L++ S++ + + K+ Y++ F+
Sbjct: 22 EASSQLKLG-EFQNVPTLSLSEARLVIN-KVLDLRKKSNNKYEERETLI-KTQDYLEVFA 78
Query: 67 RYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
R+K + + V +LS + +L FE LG+LC + EEA A++PSI G D ++
Sbjct: 79 RFKEKENIEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKALIPSI---GSKISDADLQ 135
Query: 126 KMLNDLSLIKKF 137
++L++L+ ++ F
Sbjct: 136 ELLDELTKLRNF 147
>gi|340516575|gb|EGR46823.1| predicted protein [Trichoderma reesei QM6a]
Length = 142
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE A L +G EF L E A++L+ + + +D +++ ++L Y+ F
Sbjct: 16 EEAGAVLNLG-EFQDVDTLTLSEAALVLNALVAK--RRNDRKNVNETEMLNQTLNYLDHF 72
Query: 66 SRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
+R+ + V V +LS ++ LA+FE LG+LC E +EA ++PS+ + DE +
Sbjct: 73 ARFTQKENVEAVERLLSAHKNLAKFERAQLGSLCCENADEAKTLIPSLADK---ISDEDL 129
Query: 125 EKMLNDLS 132
+ +L+++S
Sbjct: 130 QDLLDEIS 137
>gi|405119928|gb|AFR94699.1| hypothetical protein CNAG_01444 [Cryptococcus neoformans var.
grubii H99]
Length = 152
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 78/140 (55%), Gaps = 12/140 (8%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE+A +L+ GD F + + L EVA +L + +Q + P ++V++ + YV
Sbjct: 14 QEEDATKLQFGD-FAEGEALTLTEVATLL----KAARQAPNVPPAPDNKVYQSTTDYVNE 68
Query: 65 FSRYKN--PDAVRQVREI--LSRYQ--LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRA 118
FS D++R + I LS L +FE+ + +L PE VE A+A++PS++ +
Sbjct: 69 FSNTTMDVSDSMRTLPAISALSARHGFLNKFEIAQIMSLRPERVEVAVALIPSLERYAQG 128
Query: 119 HDDEA-IEKMLNDLSLIKKF 137
++EA ++ +L+D+ + ++
Sbjct: 129 DENEAQLQSLLDDVRAMVRY 148
>gi|365981351|ref|XP_003667509.1| hypothetical protein NDAI_0A01080 [Naumovozyma dairenensis CBS 421]
gi|343766275|emb|CCD22266.1| hypothetical protein NDAI_0A01080 [Naumovozyma dairenensis CBS 421]
Length = 255
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ +L+Y+ FSR+++ + V V ++L L FE+ LG+L +T +EA +VPS+ +
Sbjct: 175 LKNTLEYLTNFSRFRDQETVSAVIQLLKSTGLHPFEIAQLGSLACDTADEAKTLVPSLTS 234
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 235 --KISDDE-LERILKELS 249
>gi|342879575|gb|EGU80820.1| hypothetical protein FOXB_08687 [Fusarium oxysporum Fo5176]
Length = 158
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE +A L +G EF L E A++L+ + + + + N +++ +L Y+ F
Sbjct: 32 EEASAVLNLG-EFQDVDTLTLSEAALVLNALHAKRKNDRRNVNN--TEMLNSTLTYLDNF 88
Query: 66 SRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
+R+ + V V +LS ++ LA+FE LG+LC E +EA ++PS+ + D+ +
Sbjct: 89 ARFTQKENVEAVERLLSAHKNLAKFERAQLGSLCCEGADEAKTLIPSLADK---ISDQDL 145
Query: 125 EKMLNDLS 132
+ +L+++S
Sbjct: 146 QDLLDEIS 153
>gi|407280318|pdb|1WCM|D Chain D, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
Length = 177
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 33/159 (20%)
Query: 4 EEEENAAELKIGDEF------------------LKAKCLMNCEVAIILDHKYEQLQQ-TS 44
EEEENAA L++G EF L L+ E + +++ Q+ T
Sbjct: 16 EEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKTR 75
Query: 45 DDPMNQVSQVFEKS-----------LQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCV 93
+ + + + E++ +QY+ FSR+++ + V V ++L L FE+
Sbjct: 76 EKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQ 135
Query: 94 LGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 136 LGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 171
>gi|336464636|gb|EGO52876.1| hypothetical protein NEUTE1DRAFT_114768 [Neurospora tetrasperma
FGSC 2508]
Length = 320
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 7/129 (5%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE +A LK+G EF L E +++++ + ++ D + V K+L Y+
Sbjct: 193 EEEASAVLKLG-EFQDVDTLTLSEASLVINALMTKRRKDRKD--RNETDVLNKTLDYLDA 249
Query: 65 FSRYKNPDAVRQVREILS-RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + V V +LS R +L +FE +G+LC ++ +E ++PS+ + DDE
Sbjct: 250 FARFKQKENVEAVERLLSARKELTKFERAQIGSLCCDSADECKTLIPSLA--DKITDDE- 306
Query: 124 IEKMLNDLS 132
++++L++++
Sbjct: 307 LQELLDEMA 315
>gi|326434249|gb|EGD79819.1| hypothetical protein PTSG_10802 [Salpingoeca sp. ATCC 50818]
Length = 153
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 17/142 (11%)
Query: 7 ENAAELKIGDEFLKAKC--LMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
E+A L+ ++F + L+ EV IL+ + + Q +DP +S F K+L Y +R
Sbjct: 16 EDANSLEFFEDFEQVSTVPLLLSEVEKILEARKDL--QLREDPDAAMSAEFTKTLDYAQR 73
Query: 65 FSRYKNPDAVRQVREILS--RYQ-------LAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
F ++ +A +R I+ R Q L +FE L NL PETVEEA A++P++
Sbjct: 74 FGHSRSYEADEALRSIMEELRTQTPDMEKRLHKFEEVQLINLAPETVEEAKALIPTLVR- 132
Query: 116 GRAHDDEAIEKMLNDLSLIKKF 137
DD+ +E +L + + F
Sbjct: 133 ---VDDDILENVLQQIMAFRSF 151
>gi|303321770|ref|XP_003070879.1| RNA polymerase Rpb4 family protein [Coccidioides posadasii C735
delta SOWgp]
gi|240110576|gb|EER28734.1| RNA polymerase Rpb4 family protein [Coccidioides posadasii C735
delta SOWgp]
Length = 225
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
E E +++LK+G EF L E ++++ K L++ S++ + + K+ Y++
Sbjct: 96 ELEASSQLKLG-EFQNVPTLSLSEARLVIN-KVLDLRKKSNNKYEE-RETLIKTQDYLEV 152
Query: 65 FSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + + V +LS + +L FE LG+LC + EEA A++PSI G D
Sbjct: 153 FARFKEKENIEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKALIPSI---GNKISDAD 209
Query: 124 IEKMLNDLSLIKKF 137
++++L++L+ ++ F
Sbjct: 210 LQELLDELTKLRNF 223
>gi|296805818|ref|XP_002843733.1| polymerase II polypeptide D [Arthroderma otae CBS 113480]
gi|238845035|gb|EEQ34697.1| polymerase II polypeptide D [Arthroderma otae CBS 113480]
Length = 150
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFS 66
E ++LK+G EF L E ++++ K L++ D+ + + K+ Y++ F+
Sbjct: 23 EATSQLKLG-EFQHVPTLSLSEARLVIN-KVLDLRRKGDNKFEE-RETLVKTQDYLEVFA 79
Query: 67 RYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
R+K + + V +LS + +L FE LG+LC + EEA +++PSI G D ++
Sbjct: 80 RFKEKENIEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSI---GNKISDADLQ 136
Query: 126 KMLNDLSLIKKF 137
++L++L+ ++ F
Sbjct: 137 ELLDELTKLRNF 148
>gi|134110404|ref|XP_776029.1| hypothetical protein CNBD0780 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258697|gb|EAL21382.1| hypothetical protein CNBD0780 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 152
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 78/140 (55%), Gaps = 12/140 (8%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE+A +L+ GD F + + L EVA +L + +Q + P ++V++ + YV
Sbjct: 14 QEEDATKLQFGD-FAEGEALTLTEVATLL----KAARQAPNVPPAPDNKVYQSTTDYVNE 68
Query: 65 FSRYKN--PDAVRQVREI--LSRYQ--LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRA 118
FS D++R + I LS L +FE+ + +L PE VE A+A++PS++ +
Sbjct: 69 FSNTTMDVSDSMRTLPAISALSARHGFLNKFEIAQIMSLRPERVEVAVALIPSLERYAQG 128
Query: 119 HDDEA-IEKMLNDLSLIKKF 137
++EA ++ +L+D+ + ++
Sbjct: 129 DENEAQLQSLLDDVRSMVRY 148
>gi|323337039|gb|EGA78295.1| Rpb4p [Saccharomyces cerevisiae Vin13]
Length = 118
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ ++QY+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 38 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN- 96
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 97 -NKISDDE-LERILKELS 112
>gi|397638640|gb|EJK73155.1| hypothetical protein THAOC_05240 [Thalassiosira oceanica]
gi|397639376|gb|EJK73539.1| hypothetical protein THAOC_04830 [Thalassiosira oceanica]
Length = 161
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 32/144 (22%)
Query: 7 ENAAELKIGDEF--LKAKCLMNCEVAIILDHKYEQLQQTSDDPM---NQVSQVFEKSLQY 61
EN AEL+ G EF + L N +VA+IL Q ++ + + ++ V+ K+ +Y
Sbjct: 11 ENLAELEFGSEFDETDIQILSNSQVAVIL-------QMSAQNALVRDEELHDVYTKTQKY 63
Query: 62 VKRFSRYKNP------------------DAVRQVREILSRYQLAEFELCVLGNLCP--ET 101
RF+ KNP D R+ +E +L +FE+ L NL
Sbjct: 64 TARFNTMKNPEKEHQELVDELDNLQNVLDTFRKEKEDGEEVKLHQFEVAALMNLVATDTM 123
Query: 102 VEEAIAMVPSIKTRGRAHDDEAIE 125
VEEA+A+VPS+ + DE ++
Sbjct: 124 VEEALALVPSLSKFRESEIDEILD 147
>gi|84995276|ref|XP_952360.1| RNA polymerase 16kd subunit, RPB4-like [Theileria annulata strain
Ankara]
gi|65302521|emb|CAI74628.1| RNA polymerase 16kd subunit, RPB4-like, putative [Theileria
annulata]
Length = 130
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 8 NAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSR 67
+ + + EF +KCL CE+ +IL + +L +D Q + S +Y RF+
Sbjct: 7 DPTKFDLDPEFKNSKCLNLCELHLILGDQL-RLHHNRND---TAVQFIKTSHEYASRFAI 62
Query: 68 YKNPDAVRQVREILSRYQL-AEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEK 126
K +A+ +R + R L EFE+ L NL P++ +EA +++PS+ R DD+ I K
Sbjct: 63 LKCRNAIVDIRTTIERDGLLHEFEMASLVNLLPKSADEAKSLIPSL---CRIPDDK-INK 118
Query: 127 ML 128
+L
Sbjct: 119 IL 120
>gi|323332974|gb|EGA74376.1| Rpb4p [Saccharomyces cerevisiae AWRI796]
Length = 108
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ ++QY+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 28 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN- 86
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 87 -NKISDDE-LERILKELS 102
>gi|61679565|pdb|1Y14|A Chain A, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|61679567|pdb|1Y14|C Chain C, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
Length = 187
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ ++QY+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 107 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN- 165
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 166 -NKISDDE-LERILKELS 181
>gi|389626587|ref|XP_003710947.1| hypothetical protein MGG_04508 [Magnaporthe oryzae 70-15]
gi|351650476|gb|EHA58335.1| hypothetical protein MGG_04508 [Magnaporthe oryzae 70-15]
gi|440463443|gb|ELQ33023.1| hypothetical protein OOU_Y34scaffold01005g49 [Magnaporthe oryzae
Y34]
gi|440481312|gb|ELQ61911.1| hypothetical protein OOW_P131scaffold01138g29 [Magnaporthe oryzae
P131]
Length = 150
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILS-RYQLAEFELCVLGNLCPETVEEAIAMVP 110
++V +K+ ++ F R+K P+ V+ +LS R +L +FE + +L PE +EA ++P
Sbjct: 68 TEVLQKTRDHLSLFRRFKTPENVQAAERLLSARPELHKFERAQIASLVPENSDEAKKLIP 127
Query: 111 SIKTRGRAHDDEAIEKMLNDLS 132
S+K + DD +E +L +LS
Sbjct: 128 SLKDK---FDDHDLEDLLQELS 146
>gi|401841500|gb|EJT43882.1| RPB4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 221
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ ++QY+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN- 199
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 200 -NKISDDE-LERILKELS 215
>gi|363753130|ref|XP_003646781.1| hypothetical protein Ecym_5193 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890417|gb|AET39964.1| hypothetical protein Ecym_5193 [Eremothecium cymbalariae
DBVPG#7215]
Length = 196
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS 111
+Q ++++ Y+ FSR+++ + V V ++L L FE+ LG+L E +EA ++PS
Sbjct: 113 NQALKQTMIYLTNFSRFRDQETVTAVTQLLQSTGLHPFEVAQLGSLSCEDADEAKTLIPS 172
Query: 112 IKTRGRAHDDEAIEKMLNDLS 132
+ + DE +E++L +LS
Sbjct: 173 LNNKI---SDEDLERILKELS 190
>gi|366991007|ref|XP_003675271.1| hypothetical protein NCAS_0B08160 [Naumovozyma castellii CBS 4309]
gi|342301135|emb|CCC68900.1| hypothetical protein NCAS_0B08160 [Naumovozyma castellii CBS 4309]
Length = 246
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ +L+Y+ FSR+++ + V V ++L L FE+ LG+L +T +EA +VPS+
Sbjct: 166 LKNTLEYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLVPSLN- 224
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 225 -NKISDDE-LERILKELS 240
>gi|326634541|pdb|3QT1|D Chain D, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
Length = 219
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ ++QY+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 139 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN- 197
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 198 -NKISDDE-LERILKELS 213
>gi|367043448|ref|XP_003652104.1| hypothetical protein THITE_2150040 [Thielavia terrestris NRRL 8126]
gi|346999366|gb|AEO65768.1| hypothetical protein THITE_2150040 [Thielavia terrestris NRRL 8126]
Length = 146
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
EEE A LK+G EF L E A++++ + ++ D + V K+L Y+
Sbjct: 19 EEEAGAVLKLG-EFQDVDTLTLSEAALVINALMAKRRKDRKD--RNETDVLVKTLDYLDS 75
Query: 65 FSRYKNPDAVRQVREILS-RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K + V V +LS + +L ++E +G+LC ++ +E ++PS+ + DE
Sbjct: 76 FARFKQKENVEAVERLLSAQKELTKYERAQIGSLCCDSADECKTLIPSLADK---ISDED 132
Query: 124 IEKMLNDLS 132
++++L++++
Sbjct: 133 LQELLDEMA 141
>gi|302664532|ref|XP_003023895.1| hypothetical protein TRV_01945 [Trichophyton verrucosum HKI 0517]
gi|291187915|gb|EFE43277.1| hypothetical protein TRV_01945 [Trichophyton verrucosum HKI 0517]
Length = 163
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 16/145 (11%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILD----------HKYEQLQQTSD-DPMNQVSQ 53
E E A+LK+G EF L E ++++ K+E+ + + P++ +
Sbjct: 21 ELEATAQLKLG-EFQHVPTLSLSEARLVINKVLDLRRKGESKFEEREPSMMLTPISLAGR 79
Query: 54 VFEKSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSI 112
K+ Y++ F+R+K + + V +LS + +L FE LG+LC + EEA +++PSI
Sbjct: 80 TLVKTQDYLEVFARFKEKENIEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSI 139
Query: 113 KTRGRAHDDEAIEKMLNDLSLIKKF 137
G D ++++L++L+ ++ F
Sbjct: 140 ---GNKISDADLQELLDELTKLRNF 161
>gi|408387669|gb|EKJ67386.1| hypothetical protein FPSE_12432 [Fusarium pseudograminearum CS3096]
Length = 157
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE A L +G EF L E A++L+ + + + + N +++ +L Y+ F
Sbjct: 31 EEATAVLNLG-EFQDVDTLTLSEAALVLNALHAKRKNDRRNVNN--TEMLNSTLTYLDNF 87
Query: 66 SRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
+R+ + V V +LS ++ LA+FE LG+LC E +EA ++PS+ + D+ +
Sbjct: 88 ARFTQKENVEAVERLLSAHKNLAKFERAQLGSLCCEGADEAKTLIPSLADKI---SDQDL 144
Query: 125 EKMLNDLS 132
+ +L+++S
Sbjct: 145 QDLLDEIS 152
>gi|6322321|ref|NP_012395.1| Rpb4p [Saccharomyces cerevisiae S288c]
gi|133336|sp|P20433.1|RPB4_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName: Full=B32;
AltName: Full=DNA-directed RNA polymerase II 32 kDa
polypeptide
gi|30749740|pdb|1NT9|D Chain D, Complete 12-Subunit Rna Polymerase Ii
gi|61679447|pdb|1Y1W|D Chain D, Complete Rna Polymerase Ii Elongation Complex
gi|61679464|pdb|1Y77|D Chain D, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679505|pdb|1Y1V|D Chain D, Refined Rna Polymerase Ii-tfiis Complex
gi|61679518|pdb|1Y1Y|D Chain D, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754246|pdb|2B63|D Chain D, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590857|pdb|2B8K|D Chain D, 12-Subunit Rna Polymerase Ii
gi|134104677|pdb|2JA5|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104692|pdb|2JA6|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104713|pdb|2JA7|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104725|pdb|2JA7|P Chain P, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104737|pdb|2JA8|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|160877776|pdb|2R7Z|D Chain D, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172230|pdb|2R92|D Chain D, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172243|pdb|2R93|D Chain D, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613465|pdb|2VUM|D Chain D, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|224983593|pdb|3FKI|D Chain D, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|240104514|pdb|3H3V|E Chain E, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839444|pdb|3HOU|D Chain D, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839459|pdb|3HOU|P Chain P, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839474|pdb|3HOV|D Chain D, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839489|pdb|3HOW|D Chain D, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839504|pdb|3HOX|D Chain D, Complete Rna Polymerase Ii Elongation Complex V
gi|254839519|pdb|3HOY|D Chain D, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839534|pdb|3HOZ|D Chain D, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471949|pdb|3I4M|D Chain D, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471964|pdb|3I4N|D Chain D, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618768|pdb|3K1F|D Chain D, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|325053966|pdb|3PO2|D Chain D, Arrested Rna Polymerase Ii Elongation Complex
gi|325053981|pdb|3PO3|D Chain D, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|353251636|pdb|3J0K|D Chain D, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380839|pdb|4A3C|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546293|pdb|4A3B|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546311|pdb|4A3D|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546328|pdb|4A3E|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546345|pdb|4A3F|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546362|pdb|4A3J|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546379|pdb|4A3K|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546395|pdb|4A3L|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546412|pdb|4A3M|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977882|pdb|4A3G|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977897|pdb|4A3I|D Chain D, Rna Polymerase Ii Binary Complex With Dna
gi|380764982|pdb|4A93|D Chain D, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145449|pdb|4BBR|D Chain D, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145462|pdb|4BBS|D Chain D, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|4834|emb|CAA41112.1| RPB4 [Saccharomyces cerevisiae]
gi|295648|gb|AAA34996.1| RNA polymerase II subunit RPB4 [Saccharomyces cerevisiae]
gi|854557|emb|CAA60815.1| RNA polymerase II subunit 4 [Saccharomyces cerevisiae]
gi|1015548|emb|CAA89435.1| RPB4 [Saccharomyces cerevisiae]
gi|45269603|gb|AAS56182.1| YJL140W [Saccharomyces cerevisiae]
gi|151944986|gb|EDN63241.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190409366|gb|EDV12631.1| RNA polymerase II fourth largest subunit [Saccharomyces cerevisiae
RM11-1a]
gi|256272141|gb|EEU07141.1| Rpb4p [Saccharomyces cerevisiae JAY291]
gi|285812762|tpg|DAA08660.1| TPA: Rpb4p [Saccharomyces cerevisiae S288c]
gi|290771093|emb|CBK33718.1| Rpb4p [Saccharomyces cerevisiae EC1118]
gi|323348033|gb|EGA82291.1| Rpb4p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354389|gb|EGA86228.1| Rpb4p [Saccharomyces cerevisiae VL3]
gi|349579060|dbj|GAA24223.1| K7_Rpb4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764917|gb|EHN06435.1| Rpb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298625|gb|EIW09722.1| Rpb4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 221
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ ++QY+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN- 199
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 200 -NKISDDE-LERILKELS 215
>gi|365760048|gb|EHN01796.1| Rpb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 221
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ ++QY+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN- 199
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 200 -NKISDDE-LERILKELS 215
>gi|302925861|ref|XP_003054179.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735120|gb|EEU48466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 154
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 73/128 (57%), Gaps = 7/128 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE + L +G EF + L E A++L+ + + + +N+ +++ ++L Y+ F
Sbjct: 28 EEASTVLNLG-EFQEVDTLTLSEAALVLNALVAKRRNDRKN-VNE-TEMLNQTLTYLDHF 84
Query: 66 SRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
+R+ + V V +LS ++ LA+FE LG+LC E +EA ++PS+ + + DE +
Sbjct: 85 ARFTQKENVEAVERLLSAHKNLAKFERAQLGSLCCENADEAKTLIPSLADKIK---DEDL 141
Query: 125 EKMLNDLS 132
+ +L+++S
Sbjct: 142 QDLLDEIS 149
>gi|34810556|pdb|1PQV|D Chain D, Rna Polymerase Ii-Tfiis Complex
Length = 221
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ ++QY+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN- 199
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 200 -NKISDDE-LERILKELS 215
>gi|46108486|ref|XP_381301.1| hypothetical protein FG01125.1 [Gibberella zeae PH-1]
Length = 157
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE A L +G EF L E A++L+ + + + + N +++ +L Y+ F
Sbjct: 31 EEATAVLNLG-EFQDVDTLTLSEAALVLNALHAKRKNDRRNVNN--TEMLNSTLTYLDNF 87
Query: 66 SRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
+R+ + V V +LS ++ LA+FE LG+LC E +EA ++PS+ + D+ +
Sbjct: 88 ARFTQKENVEAVERLLSAHKNLAKFERAQLGSLCCEGADEAKTLIPSLADKI---SDQDL 144
Query: 125 EKMLNDLS 132
+ +L+++S
Sbjct: 145 QDLLDEIS 152
>gi|327305417|ref|XP_003237400.1| polymerase II polypeptide D [Trichophyton rubrum CBS 118892]
gi|326460398|gb|EGD85851.1| polymerase II polypeptide D [Trichophyton rubrum CBS 118892]
gi|326472179|gb|EGD96188.1| polymerase II polypeptide D [Trichophyton tonsurans CBS 112818]
gi|326476957|gb|EGE00967.1| polymerase II polypeptide D [Trichophyton equinum CBS 127.97]
Length = 150
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFS 66
E A+LK+G EF L E ++++ K L++ + + + K+ Y++ F+
Sbjct: 23 EATAQLKLG-EFQHVPTLSLSEARLVIN-KVLDLRRKGESKFEE-RETLVKTQDYLEVFA 79
Query: 67 RYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
R+K + + V +LS + +L FE LG+LC + EEA +++PSI G D ++
Sbjct: 80 RFKEKENIEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSI---GNKISDADLQ 136
Query: 126 KMLNDLSLIKKF 137
++L++L+ ++ F
Sbjct: 137 ELLDELTKLRNF 148
>gi|261203243|ref|XP_002628835.1| polymerase II polypeptide D [Ajellomyces dermatitidis SLH14081]
gi|239586620|gb|EEQ69263.1| polymerase II polypeptide D [Ajellomyces dermatitidis SLH14081]
gi|239608342|gb|EEQ85329.1| polymerase II polypeptide D [Ajellomyces dermatitidis ER-3]
gi|327349543|gb|EGE78400.1| RNA polymerase Rpb4 family protein [Ajellomyces dermatitidis ATCC
18188]
Length = 152
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 27/142 (19%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIIL----------DHKYEQLQQTSDDPMNQVSQVFE 56
E ++LK+G EF L E +++ DHK+E+ +
Sbjct: 25 EATSQLKLG-EFQNVPTLSLSEARLVINKVLDLRRKGDHKFEE------------RETLV 71
Query: 57 KSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
K+ Y++ F+R+K + + V +LS + +L FE LG+LC EEA +++PSI
Sbjct: 72 KTQDYLELFARFKEKENIEAVERLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSI--- 128
Query: 116 GRAHDDEAIEKMLNDLSLIKKF 137
G D ++++L++L+ ++ F
Sbjct: 129 GNKISDTELQELLDELTKLRNF 150
>gi|240273524|gb|EER37044.1| polymerase II polypeptide D [Ajellomyces capsulatus H143]
gi|325087428|gb|EGC40738.1| polymerase II polypeptide D [Ajellomyces capsulatus H88]
Length = 152
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 27/142 (19%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIIL----------DHKYEQLQQTSDDPMNQVSQVFE 56
E ++LK+G EF L E +++ DHK+E+ +
Sbjct: 25 EATSQLKLG-EFQNVPTLSLSEARLVINKVLDLRRKGDHKFEE------------RETLV 71
Query: 57 KSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
K+ Y++ F+R+K + + V +LS + +L FE LG+LC EEA +++PSI
Sbjct: 72 KTQDYLELFARFKEKENIEAVERLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSI--- 128
Query: 116 GRAHDDEAIEKMLNDLSLIKKF 137
G D ++++L++L+ ++ F
Sbjct: 129 GNKISDTELQELLDELTKLRNF 150
>gi|342319350|gb|EGU11299.1| Hypothetical Protein RTG_02771 [Rhodotorula glutinis ATCC 204091]
Length = 105
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 54 VFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113
V+ K+ YV F+R+ + + VR FE L NLCP EEA A+VPSI+
Sbjct: 22 VYNKTKDYVDTFARFHDHETASNVRSSFPNPPFQFFEQVQLVNLCPMEAEEAKALVPSIQ 81
Query: 114 TRGRAHDDEAIEKMLNDLSLIKK 136
+D+ +++ L+D++ +K
Sbjct: 82 V-----EDDQLQQYLDDMTRARK 99
>gi|225556416|gb|EEH04704.1| polymerase II polypeptide D [Ajellomyces capsulatus G186AR]
Length = 152
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFS 66
E ++LK+G EF L E ++++ K L++ D + + K+ Y++ F+
Sbjct: 25 EATSQLKLG-EFQNVPTLSLSEARLVIN-KVLDLRRKGDHKFEE-RETLVKTQDYLELFA 81
Query: 67 RYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
R+K + + V +LS + +L FE LG+LC EEA +++PSI G D ++
Sbjct: 82 RFKEKENIEAVERLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSI---GNKISDTELQ 138
Query: 126 KMLNDLSLIKKF 137
++L++L+ ++ F
Sbjct: 139 ELLDELTKLRNF 150
>gi|323304432|gb|EGA58203.1| Rpb4p [Saccharomyces cerevisiae FostersB]
gi|323308580|gb|EGA61824.1| Rpb4p [Saccharomyces cerevisiae FostersO]
Length = 108
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ + QY+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 28 LKNTTQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN- 86
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 87 -NKISDDE-LERILKELS 102
>gi|346320862|gb|EGX90462.1| polymerase (RNA) II (DNA directed) polypeptide D [Cordyceps
militaris CM01]
Length = 143
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
EE + L +G EF L E +++L+ + + +D +++ ++L Y+ F
Sbjct: 17 EEASTILNLG-EFQNVDTLTLSEASLVLNALVAK--RRNDRKNVNETEMLSQTLSYLDHF 73
Query: 66 SRYKNPDAVRQVREILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAI 124
+R+ + V V +LS ++ LA+FE LG+LC E+ +EA ++PS+ + + DE +
Sbjct: 74 ARFTQKENVEAVERLLSTHKDLAKFERAQLGSLCCESADEAKTLIPSLTEKIK---DEDL 130
Query: 125 EKMLNDLS 132
+++L ++S
Sbjct: 131 QELLEEIS 138
>gi|259486116|tpe|CBF83701.1| TPA: polymerase (RNA) II (DNA directed) polypeptide D
(AFU_orthologue; AFUA_3G08040) [Aspergillus nidulans
FGSC A4]
Length = 149
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 76/137 (55%), Gaps = 13/137 (9%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTS---DDPMNQVSQVFEKSLQY 61
E E A+ LK+G + L E +++D E ++ ++P N + K+L+Y
Sbjct: 20 ELEAASTLKLGAD-QNTHTLSLSEARLVIDKVLENKRRGGKKYEEPENLI-----KTLEY 73
Query: 62 VKRFSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
+ F+R+K+ + ++ V +L S +L FE LG+LC + +EA +++PS++ +
Sbjct: 74 LSLFARFKDEENIKAVERLLNSHTELEMFERSQLGSLCCDNADEAKSLIPSLQNK---IS 130
Query: 121 DEAIEKMLNDLSLIKKF 137
D ++++L++L+ ++ F
Sbjct: 131 DGELQELLDELTKLRNF 147
>gi|154284806|ref|XP_001543198.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150406839|gb|EDN02380.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 152
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFS 66
E ++LK+G EF L E ++++ K L++ D + + K+ Y++ F+
Sbjct: 25 EATSQLKLG-EFQNVPTLSLSEARLVIN-KVLDLRRKGDHKFEE-REALVKTQDYLELFA 81
Query: 67 RYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
R+K + + V +LS + +L FE LG+LC EEA +++PSI G D ++
Sbjct: 82 RFKEKENIEAVERLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSI---GNKISDTELQ 138
Query: 126 KMLNDLSLIKKF 137
++L++L+ ++ F
Sbjct: 139 ELLDELTKLRNF 150
>gi|62420317|gb|AAX82034.1| unknown [Homo sapiens]
Length = 57
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 80 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
+L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+ + F+
Sbjct: 1 LLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 56
>gi|302496231|ref|XP_003010118.1| hypothetical protein ARB_03624 [Arthroderma benhamiae CBS 112371]
gi|291173657|gb|EFE29478.1| hypothetical protein ARB_03624 [Arthroderma benhamiae CBS 112371]
Length = 163
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 16/145 (11%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILD----------HKYEQLQQTSD-DPMNQVSQ 53
E E A+LK+G EF L E ++++ K+E+ + P++ +
Sbjct: 21 ELEATAQLKLG-EFQHVPTLSLSEARLVINKVLDLRRKGESKFEEREPPMMLTPISLAGR 79
Query: 54 VFEKSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSI 112
K+ Y++ F+R+K + + V +LS + +L FE LG+LC + EEA +++PSI
Sbjct: 80 TLVKTQDYLEVFARFKEKENIEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSI 139
Query: 113 KTRGRAHDDEAIEKMLNDLSLIKKF 137
G D ++++L++L+ ++ F
Sbjct: 140 ---GNKISDADLQELLDELTKLRNF 161
>gi|401625213|gb|EJS43234.1| rpb4p [Saccharomyces arboricola H-6]
Length = 221
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ ++QY+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 200
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ D+ +E++L +LS
Sbjct: 201 K---ISDDDLERILKELS 215
>gi|410080694|ref|XP_003957927.1| hypothetical protein KAFR_0F01950 [Kazachstania africana CBS 2517]
gi|372464514|emb|CCF58792.1| hypothetical protein KAFR_0F01950 [Kazachstania africana CBS 2517]
Length = 199
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ +++Y+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 119 LKNTMEYLTNFSRFRDQETVGAVIQLLKSTGLHPFEIAQLGSLACDTADEAKTLIPSLN- 177
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 178 -NKISDDE-LERILKELS 193
>gi|50290017|ref|XP_447440.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526750|emb|CAG60377.1| unnamed protein product [Candida glabrata]
Length = 215
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ S++Y+ FSR+++ + V V ++L L FE+ LG L +T +EA ++PS+
Sbjct: 135 LKNSMEYLTNFSRFRDQETVAAVLQLLKSTGLHPFEVAQLGTLACDTADEAKTLIPSLTN 194
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ D+ +E++L +LS
Sbjct: 195 KI---SDDDLERILKELS 209
>gi|444316670|ref|XP_004178992.1| hypothetical protein TBLA_0B06500 [Tetrapisispora blattae CBS 6284]
gi|387512032|emb|CCH59473.1| hypothetical protein TBLA_0B06500 [Tetrapisispora blattae CBS 6284]
Length = 208
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ +++Y+ FSR+++ + V V ++L +L FE+ LG+L ++ +EA ++PS+
Sbjct: 128 LKNTMEYLTNFSRFRDQETVGAVIQLLKSTELHPFEIAQLGSLACDSADEAKTLIPSLN- 186
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 187 -NKISDDE-LERILKELS 202
>gi|156844386|ref|XP_001645256.1| hypothetical protein Kpol_1060p55 [Vanderwaltozyma polyspora DSM
70294]
gi|156115915|gb|EDO17398.1| hypothetical protein Kpol_1060p55 [Vanderwaltozyma polyspora DSM
70294]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ +++Y+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 141 LKNTMEYLTNFSRFRDQETVGAVIQLLKSTGLHPFEIAQLGSLACDTADEAKTLIPSLN- 199
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 200 -NKISDDE-LERILKELS 215
>gi|224009492|ref|XP_002293704.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970376|gb|EED88713.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 172
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 32/132 (24%)
Query: 7 ENAAELKIGDEFLK--AKCLMNCEVAIILDHKYEQLQQTSDDPM---NQVSQVFEKSLQY 61
ENAAEL G F + L N +VA+IL Q ++ + + ++ V++K+ +Y
Sbjct: 22 ENAAELSFGGGFATEDIQILSNAQVAVIL-------QMSAQNALIRDEELHDVYKKTQKY 74
Query: 62 VKRFSRYKNP--------DAVRQVREILSRY----------QLAEFELCVLGNLCP--ET 101
V+R++ KNP D + ++ L+ + +L +FE+ L NL
Sbjct: 75 VERYNTMKNPEKEHQELVDELDNLQGALTTFRKETEDGQEMELHQFEVAALMNLVATDTM 134
Query: 102 VEEAIAMVPSIK 113
VEEA+A++PS+
Sbjct: 135 VEEAVALIPSLS 146
>gi|401407921|ref|XP_003883409.1| putative DNA-directed RNA polymerase II [Neospora caninum
Liverpool]
gi|325117826|emb|CBZ53377.1| putative DNA-directed RNA polymerase II [Neospora caninum
Liverpool]
Length = 130
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 12 LKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNP 71
+ +G EF AKCL CE+ +IL + +L T + + + S Y RF++
Sbjct: 10 MGLGPEFRSAKCLNLCELQLILSDQL-RLPNTRS---AEAQGLLKASYDYSTRFAKLLTR 65
Query: 72 DAVRQVREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSI 112
+ + +R L R L +FE+ L NL P++++EA A++P++
Sbjct: 66 NIIVDLRNNLEREGDLHQFEIAQLVNLLPKSLDEAKALIPTL 107
>gi|366999342|ref|XP_003684407.1| hypothetical protein TPHA_0B03010 [Tetrapisispora phaffii CBS 4417]
gi|357522703|emb|CCE61973.1| hypothetical protein TPHA_0B03010 [Tetrapisispora phaffii CBS 4417]
Length = 202
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ S+ Y+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 122 LKNSMGYLTNFSRFRDQETVGAVIQLLRSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 181
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 182 --KISDDE-LERILKELS 196
>gi|320582656|gb|EFW96873.1| RNA polymerase II subunit B32 [Ogataea parapolymorpha DL-1]
Length = 189
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 80/165 (48%), Gaps = 39/165 (23%)
Query: 4 EEEENAAELKIGDEF-------------------LKAKCLMNC----EVAIILDHKYEQL 40
E+EENAAELK+G EF +A+ L+ +A++ + L
Sbjct: 21 EDEENAAELKLGPEFQLEQIDNYGNETKLVALNVSEARILIRAALQERMAMVQKLGGQDL 80
Query: 41 QQTSDDPMNQV----------SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ---LA 87
+++P ++ ++V K+L Y+ F+R+K+ + V +L + L
Sbjct: 81 GLATENPDDETLARMATAPGANEVLRKTLDYLSTFARFKDAETCTAVEALLKSSENSVLH 140
Query: 88 EFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
FE LG+L E ++EA+ ++PS+ + D+ ++++L++L+
Sbjct: 141 PFEAAQLGSLACEDIDEAVTLIPSLNEK---KDEVDLQRILDELN 182
>gi|406603825|emb|CCH44684.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 200
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 52/179 (29%)
Query: 3 GEEEENAAELKIGDEF-----------LKAKCLMNCEVAIIL------------------ 33
EEEENAA L++G EF + L E II+
Sbjct: 19 NEEEENAANLQLGSEFDIRQYDHDGEPMDLIALNLSEARIIIRSALKERKKIMTPNGEFR 78
Query: 34 DHKYEQLQQ--------TSDDPMNQVS---------QVFEKSLQYVKRFSRYKNPDAVRQ 76
D E L Q ++DD N+++ +V +K+L ++ FSR+++
Sbjct: 79 DQPLETLDQDDENDEANSNDDDNNEIAKAAIAVGANEVLKKTLDHLSTFSRFRDTQTCSA 138
Query: 77 VREILS---RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
V ++L L FEL LG+L + V+EA ++PS+ + D ++ +LN LS
Sbjct: 139 VEQLLKSPENSNLHPFELAQLGSLACDDVDEAKTLIPSLTNKKT---DAELQNILNQLS 194
>gi|254581154|ref|XP_002496562.1| ZYRO0D02992p [Zygosaccharomyces rouxii]
gi|238939454|emb|CAR27629.1| ZYRO0D02992p [Zygosaccharomyces rouxii]
Length = 207
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ +++Y+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 127 LKNTMEYLTNFSRFRDQETVSAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 186
Query: 115 RGRAHDDEAIEKMLNDLSLI 134
+ D E I K L++L +
Sbjct: 187 KISDDDLERILKELSNLETV 206
>gi|242822702|ref|XP_002487941.1| polymerase (RNA) II (DNA directed) polypeptide D [Talaromyces
stipitatus ATCC 10500]
gi|218712862|gb|EED12287.1| polymerase (RNA) II (DNA directed) polypeptide D [Talaromyces
stipitatus ATCC 10500]
Length = 178
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 38 EQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREIL-SRYQLAEFELCVLGN 96
+ L DD N K+L Y++ F+R+K+ + ++ V +L S +L FE LG+
Sbjct: 84 DGLANVWDDGRN-----LTKTLDYLEVFARFKDEENIKAVERLLNSHTELEMFERSQLGS 138
Query: 97 LCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 137
LC + EEA +++PS++ + D ++++L++L+ ++ F
Sbjct: 139 LCCDNAEEAKSLIPSLQNK---ISDVDLQELLDELTKLRNF 176
>gi|403353084|gb|EJY76076.1| RNA polymerase 16kd subunit, RPB4-like, putative [Oxytricha
trifallax]
Length = 142
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 14 IGDEFLKAKCLMNCEVAIILDHKYEQ--------LQQTSDDPMNQVS-QVFEKSLQYVKR 64
IG F+ A + N EV ++ + +NQ+ ++ K+ QYV +
Sbjct: 14 IGANFVDAYLISNAEVVQLMKGNRSDKDKLVGAGVGLNMPQGINQIGDEMQRKTEQYVNK 73
Query: 65 FSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
F+ ++ D V +R + ++ ++ E EL +L NL P + EEA+ ++P +K R
Sbjct: 74 FNIFEQKDKVMVIRAEMQKFNEIPEIELILLWNLAPGSYEEAVTLIPQLKDR 125
>gi|71000204|ref|XP_754810.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
fumigatus Af293]
gi|119492539|ref|XP_001263635.1| polymerase (RNA) II (DNA directed) polypeptide D [Neosartorya
fischeri NRRL 181]
gi|66852447|gb|EAL92772.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
fumigatus Af293]
gi|119411795|gb|EAW21738.1| polymerase (RNA) II (DNA directed) polypeptide D [Neosartorya
fischeri NRRL 181]
gi|159127819|gb|EDP52934.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
fumigatus A1163]
Length = 148
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 57 KSLQYVKRFSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
K+L Y++ F+R+K+ + ++ V +L S +L FE LG+LC + EEA +++PS++ +
Sbjct: 68 KTLDYLEVFARFKDEENIKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQHK 127
Query: 116 GRAHDDEAIEKMLNDLSLIKKF 137
D ++++L++L+ ++ F
Sbjct: 128 I---SDADLQELLDELTKLRNF 146
>gi|403337994|gb|EJY68227.1| RNA polymerase 16kd subunit, RPB4-like, putative [Oxytricha
trifallax]
Length = 142
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 14 IGDEFLKAKCLMNCEVAIILDHKYEQ--------LQQTSDDPMNQVS-QVFEKSLQYVKR 64
IG F+ A + N EV ++ + +NQ+ ++ K+ QYV +
Sbjct: 14 IGANFVDAYLISNAEVVQLMKGNRSDKDKLVGAGVGLNMPQGINQIGDEMQRKTEQYVNK 73
Query: 65 FSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
F+ ++ D V +R + ++ ++ E EL +L NL P + EEA+ ++P +K R
Sbjct: 74 FNIFEQKDKVMVIRAEMQKFNEIPEIELILLWNLAPGSYEEAVTLIPQLKDR 125
>gi|367017324|ref|XP_003683160.1| hypothetical protein TDEL_0H00900 [Torulaspora delbrueckii]
gi|359750824|emb|CCE93949.1| hypothetical protein TDEL_0H00900 [Torulaspora delbrueckii]
Length = 236
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ +++Y+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 156 LKNTMEYLTNFSRFRDQETVSAVIQLLKSVGLHPFEVAQLGSLACDTADEAKTLIPSLNN 215
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ D+ +E++L +LS
Sbjct: 216 K---ISDDDLERILKELS 230
>gi|121705116|ref|XP_001270821.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
clavatus NRRL 1]
gi|119398967|gb|EAW09395.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
clavatus NRRL 1]
Length = 148
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 57 KSLQYVKRFSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
K+L Y++ F+R+K+ + ++ V +L S +L FE LG+LC + EEA +++PS++ +
Sbjct: 68 KTLDYLEVFARFKDEENIKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQHK 127
Query: 116 GRAHDDEAIEKMLNDLSLIKKF 137
D ++++L++L+ ++ F
Sbjct: 128 ---ISDGELQELLDELTKLRNF 146
>gi|425765673|gb|EKV04342.1| Polymerase (RNA) II (DNA directed) polypeptide D [Penicillium
digitatum PHI26]
gi|425783567|gb|EKV21411.1| Polymerase (RNA) II (DNA directed) polypeptide D [Penicillium
digitatum Pd1]
Length = 148
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 57 KSLQYVKRFSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
K+L Y+ F+R+K+ + ++ V +L S +L FE LG+LC + EEA +++PS++ +
Sbjct: 68 KTLDYLDVFARFKDEENIKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQNK 127
Query: 116 GRAHDDEAIEKMLNDLSLIKKF 137
D ++++L++L+ ++ F
Sbjct: 128 I---SDGDLQELLDELTKLRNF 146
>gi|295672311|ref|XP_002796702.1| polymerase II polypeptide D [Paracoccidioides sp. 'lutzii' Pb01]
gi|225683260|gb|EEH21544.1| polymerase II polypeptide D [Paracoccidioides brasiliensis Pb03]
gi|226283682|gb|EEH39248.1| polymerase II polypeptide D [Paracoccidioides sp. 'lutzii' Pb01]
gi|226288266|gb|EEH43778.1| polymerase (RNA) II (DNA directed) polypeptide D [Paracoccidioides
brasiliensis Pb18]
Length = 152
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 27/142 (19%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILD----------HKYEQLQQTSDDPMNQVSQVFE 56
E ++LK+G EF L E ++++ HK+E+ +
Sbjct: 25 EATSQLKLG-EFQNVPTLSLSEARLVINKVLDLRRKGEHKFEE------------RETLV 71
Query: 57 KSLQYVKRFSRYKNPDAVRQVREILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
K+ Y++ F+R+K + + V +LS + +L FE LG+LC EEA +++PSI
Sbjct: 72 KTQDYLELFARFKEKENIEAVERLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSI--- 128
Query: 116 GRAHDDEAIEKMLNDLSLIKKF 137
G D ++++L++L+ ++ F
Sbjct: 129 GNKISDTELQELLDELTKLRNF 150
>gi|145233803|ref|XP_001400274.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus niger
CBS 513.88]
gi|134057210|emb|CAK44473.1| unnamed protein product [Aspergillus niger]
gi|358367833|dbj|GAA84451.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
kawachii IFO 4308]
Length = 148
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 57 KSLQYVKRFSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
K+L Y++ F+R+K+ + ++ V +L S +L FE LG+LC + EEA +++PS++ +
Sbjct: 68 KTLDYLEVFARFKDEENIKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQHK 127
Query: 116 GRAHDDEAIEKMLNDLSLIKKF 137
D ++++L++L+ ++ F
Sbjct: 128 ---ISDGDLQELLDELTKLRNF 146
>gi|255724754|ref|XP_002547306.1| hypothetical protein CTRG_01612 [Candida tropicalis MYA-3404]
gi|240135197|gb|EER34751.1| hypothetical protein CTRG_01612 [Candida tropicalis MYA-3404]
Length = 225
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
++V K+L Y+ FSR+KN +V V ++L+ + L FEL LG L E EEA
Sbjct: 136 NEVVHKTLNYLTNFSRFKNTSSVETVEKLLNDFSEHCNEPLHPFELAQLGTLECEDSEEA 195
Query: 106 IAMVPSIKTR 115
+++PS+ +
Sbjct: 196 KSLIPSLTNK 205
>gi|209882974|ref|XP_002142921.1| DNA-directed RNA polymerase II subunit RPB4 [Cryptosporidium muris
RN66]
gi|209558527|gb|EEA08572.1| DNA-directed RNA polymerase II subunit RPB4 , putative
[Cryptosporidium muris RN66]
Length = 130
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 47 PM--NQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILS-RYQLAEFELCVLGNLCPETVE 103
PM + + + S QY +F + KN +V +RE L +L E+E+ L NL P+T +
Sbjct: 39 PMKSGEAHNLMKSSHQYATKFGKIKNRASVMLLREALDENKELHEYEISCLVNLLPKTPD 98
Query: 104 EAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
E A++PS+ R DDE IE++L L
Sbjct: 99 ETKALIPSL---ARLPDDE-IERILAHL 122
>gi|255944811|ref|XP_002563173.1| Pc20g06450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587908|emb|CAP85974.1| Pc20g06450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 148
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 57 KSLQYVKRFSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
K+L Y+ F+R+K+ + ++ V +L S +L FE LG+LC + EEA +++PS++ +
Sbjct: 68 KTLDYLDVFARFKDEENIKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQNK 127
Query: 116 GRAHDDEAIEKMLNDLSLIKKF 137
D ++++L++L+ ++ F
Sbjct: 128 I---SDGDLQELLDELTKLRNF 146
>gi|51970310|dbj|BAD43847.1| unnamed protein product [Arabidopsis thaliana]
Length = 158
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE 79
A+C+M+CE ILD QL S+DP ++ ++++L YV+ Y NP +VR+V E
Sbjct: 89 AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLE 147
>gi|51971721|dbj|BAD44525.1| unnamed protein product [Arabidopsis thaliana]
Length = 155
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 21 AKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE 79
A+C+M+CE ILD QL S+DP ++ ++++L YV+ Y NP +VR+V E
Sbjct: 86 AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLE 144
>gi|356558007|ref|XP_003547301.1| PREDICTED: uncharacterized protein LOC100775535 [Glycine max]
Length = 174
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 81 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
L++ L + E+CV+GN+CPET++E A++PS+K + R D + ++ L+ L+
Sbjct: 118 LAKCGLTDSEICVIGNVCPETIDEVFALLPSLKDK-RNIDRQVLKDSLSQLA 168
>gi|169767854|ref|XP_001818398.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
oryzae RIB40]
gi|238484773|ref|XP_002373625.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
flavus NRRL3357]
gi|83766253|dbj|BAE56396.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220701675|gb|EED58013.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
flavus NRRL3357]
gi|391870620|gb|EIT79800.1| RNA polymerase II, fourth largest subunit [Aspergillus oryzae
3.042]
Length = 148
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 57 KSLQYVKRFSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 115
K+L Y++ F+R+K+ + ++ V +L S +L FE LG+LC + EEA +++PS++ +
Sbjct: 68 KTLDYLEVFARFKDEENIKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQHK 127
Query: 116 GRAHDDEAIEKMLNDLSLIKKF 137
D ++++L++L+ ++ F
Sbjct: 128 ---ISDGDLQELLDELTKLRNF 146
>gi|294658380|ref|XP_460714.2| DEHA2F08140p [Debaryomyces hansenii CBS767]
gi|202953086|emb|CAG89054.2| DEHA2F08140p [Debaryomyces hansenii CBS767]
Length = 191
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
+++ K+L Y+ FSR+KN + V ++L+ + L FEL LG L E EEA
Sbjct: 102 NEIMHKTLNYLSNFSRFKNSSSTETVEKLLNDFNFSTSEPLHPFELAQLGTLECEDAEEA 161
Query: 106 IAMVPSIKTR 115
+++PS+ +
Sbjct: 162 KSLIPSLTNK 171
>gi|237837463|ref|XP_002368029.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|211965693|gb|EEB00889.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|221509208|gb|EEE34777.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 185
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF AKCL CE+ +IL + +L T + + + S Y RF++ + + +
Sbjct: 70 EFRSAKCLNLCELQLILSDQL-RLPNTRSA---EAQGLLKASYDYSTRFAKLRTRNVIVD 125
Query: 77 VREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSI 112
+R L R L +FE+ L NL P++++EA A++P++
Sbjct: 126 LRNNLEREGDLHQFEIAQLVNLLPKSLDEAKALIPTL 162
>gi|221488711|gb|EEE26925.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 185
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
EF AKCL CE+ +IL + +L T + + + S Y RF++ + + +
Sbjct: 70 EFRSAKCLNLCELQLILSDQL-RLPNTRSA---EAQGLLKASYDYSTRFAKLRTRNVIVD 125
Query: 77 VREILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSI 112
+R L R L +FE+ L NL P++++EA A++P++
Sbjct: 126 LRNNLEREGDLHQFEIAQLVNLLPKSLDEAKALIPTL 162
>gi|171680343|ref|XP_001905117.1| hypothetical protein [Podospora anserina S mat+]
gi|170939798|emb|CAP65024.1| unnamed protein product [Podospora anserina S mat+]
Length = 220
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 17/117 (14%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILD-----HKYEQLQQTSDDPMNQVSQVFEKSL 59
EEE A LK+G EF L E +++++ K ++ + D +NQ +L
Sbjct: 92 EEEAGAVLKLG-EFQDVDTLTLSEASLVINALMAKRKKDRKDRNETDALNQ-------TL 143
Query: 60 QYVKRFSRYKNPDAVRQVREILSRY-QLAEFE---LCVLGNLCPETVEEAIAMVPSI 112
Y+ F+R+K + V V +LS + +L++FE + LG+LC +T +E ++PS+
Sbjct: 144 DYLDAFARFKAKENVEAVERLLSTHKELSKFERAQIVPLGSLCCDTADECKTLIPSL 200
>gi|344302775|gb|EGW33049.1| RNA polymerase II fourth largest subunit [Spathaspora passalidarum
NRRL Y-27907]
Length = 203
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAE------FELCVLGNLCPETVEEA 105
+++ K+L Y+ F+R+KN + V ++L+ + L+ FEL LG L E EEA
Sbjct: 114 NEIMHKTLNYLSNFARFKNSSSTETVEKLLNDFSLSAIEPLHPFELAQLGTLECEDAEEA 173
Query: 106 IAMVPSIKTR 115
+++PS+ +
Sbjct: 174 KSLIPSLANK 183
>gi|407929444|gb|EKG22274.1| hypothetical protein MPH_00453 [Macrophomina phaseolina MS6]
Length = 80
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 61 YVKRFSRYKNPDAVRQVREIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 119
Y+ FSR+K+ + + +L +R LA FE LG LC ET +EA ++PS++ +
Sbjct: 4 YLDVFSRFKDREDCDSIDNLLRTRNDLAGFERSQLGTLCCETADEAKTLIPSLQDK---I 60
Query: 120 DDEAIEKMLNDLSLIKKF 137
D ++++L ++S ++ F
Sbjct: 61 SDADLQQLLTEISRLRHF 78
>gi|260945729|ref|XP_002617162.1| hypothetical protein CLUG_02606 [Clavispora lusitaniae ATCC 42720]
gi|238849016|gb|EEQ38480.1| hypothetical protein CLUG_02606 [Clavispora lusitaniae ATCC 42720]
Length = 191
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
+++ K+L Y+ FSR+KN + V ++L+ + L FE+ LGNL E EEA
Sbjct: 102 NEIVHKTLNYLSMFSRFKNSSSTETVEKLLNDFSSQASEPLHPFEIAQLGNLECEDAEEA 161
Query: 106 IAMVPSI 112
+++PS+
Sbjct: 162 KSLIPSL 168
>gi|344230891|gb|EGV62776.1| hypothetical protein CANTEDRAFT_115567 [Candida tenuis ATCC 10573]
gi|344230892|gb|EGV62777.1| hypothetical protein CANTEDRAFT_115567 [Candida tenuis ATCC 10573]
Length = 190
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 42/167 (25%)
Query: 4 EEEENAAELKIGDEFLKAK-----------CLMNCEVAIILDHKYEQLQQTSDDPMN--- 49
++EENAA LK+G EF + L E +++ ++ + PM+
Sbjct: 20 DDEENAATLKLGQEFQLHQLTNSGETEQLIALNTSEARLLIRAALKERKNKGKRPMDIED 79
Query: 50 -------------------QVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ----- 85
+++ +K+L Y+ F R+KN + V ++L+ +
Sbjct: 80 DDDENGKEDEISNLDLAGPNSNEIIQKTLNYLATFGRFKNSSSTETVEKLLADFGSSASD 139
Query: 86 -LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 131
L FE+ LG L + EEA +++PS+ + D ++ +LN+L
Sbjct: 140 PLHPFEIAQLGTLECDDSEEAKSLIPSLTNK---VTDTQLQNLLNEL 183
>gi|150865135|ref|XP_001384230.2| RNA polymerase II fourth largest subunit [Scheffersomyces stipitis
CBS 6054]
gi|149386391|gb|ABN66201.2| RNA polymerase II fourth largest subunit [Scheffersomyces stipitis
CBS 6054]
Length = 190
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAE------FELCVLGNLCPETVEEA 105
+++ K+L Y+ F+R+KN + V ++L+ + L+ FEL LG L E EEA
Sbjct: 101 NEIMHKTLNYLTNFARFKNSSSTETVEKLLNDFSLSASEPLHPFELAQLGTLECEDAEEA 160
Query: 106 IAMVPSI 112
+++PS+
Sbjct: 161 KSLIPSL 167
>gi|385302596|gb|EIF46721.1| rpb4p [Dekkera bruxellensis AWRI1499]
Length = 124
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 51 VSQVFEKSLQYVKRFSRYKNPDAVRQVREIL---SRYQLAEFELCVLGNLCPETVEEAIA 107
++V K+L+Y+ FSR+K+ + +L L FE+ LG+L E +EAI
Sbjct: 36 ANEVLSKTLKYLSTFSRFKDAETCTAAEALLKSDDNSALHPFEIAQLGSLACEDTDEAIT 95
Query: 108 MVPSIKTRGRAHDDEAIEKMLNDL 131
++PS+ + + D + I + LN L
Sbjct: 96 LIPSLNEKKDSIDLDRILEELNRL 119
>gi|448089277|ref|XP_004196760.1| Piso0_003985 [Millerozyma farinosa CBS 7064]
gi|448093518|ref|XP_004197791.1| Piso0_003985 [Millerozyma farinosa CBS 7064]
gi|359378182|emb|CCE84441.1| Piso0_003985 [Millerozyma farinosa CBS 7064]
gi|359379213|emb|CCE83410.1| Piso0_003985 [Millerozyma farinosa CBS 7064]
Length = 192
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
+++ K+L Y+ FSR+KN + V ++L+ + L FEL LG L E EEA
Sbjct: 103 NEILHKTLNYLSNFSRFKNSSSTEAVEKLLNDFSSSVSHPLHPFELAQLGTLECEEAEEA 162
Query: 106 IAMVPSIKTR 115
+++PS+ +
Sbjct: 163 KSLIPSLANK 172
>gi|146419657|ref|XP_001485789.1| hypothetical protein PGUG_01460 [Meyerozyma guilliermondii ATCC
6260]
Length = 188
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
++V K+L Y+ FSR++N + V ++L+ + L FE LGNL E EEA
Sbjct: 99 NEVIHKTLNYLSTFSRFQNTSSTETVEKLLNDFSALIAEPLHPFEFAQLGNLEFEDAEEA 158
Query: 106 IAMVPSIKTR 115
+++PS+ +
Sbjct: 159 KSLIPSLANK 168
>gi|403214872|emb|CCK69372.1| hypothetical protein KNAG_0C02610 [Kazachstania naganishii CBS
8797]
Length = 218
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQ--LAEFELCVLGNLCPETVEEAIAMVPSI 112
+ +++Y+ FSR+K+ V V +++ L FE+ LG+L +T +EA ++PS+
Sbjct: 136 LKNTMEYLTNFSRFKDQQTVSAVIQLMKTVDADLHPFEIAQLGSLACDTADEAKTLIPSL 195
Query: 113 KTRGRAHDDEAIEKMLNDLS 132
G+ DD +E++L +LS
Sbjct: 196 N--GKISDD-VLERILKELS 212
>gi|190345472|gb|EDK37362.2| hypothetical protein PGUG_01460 [Meyerozyma guilliermondii ATCC
6260]
Length = 188
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
++V K+L Y+ FSR++N + V ++L+ + L FE LGNL E EEA
Sbjct: 99 NEVIHKTLNYLSTFSRFQNTSSTETVEKLLNDFSASIAEPLHPFEFAQLGNLEFEDAEEA 158
Query: 106 IAMVPSIKTR 115
+++PS+ +
Sbjct: 159 KSLIPSLANK 168
>gi|448516912|ref|XP_003867666.1| Rpb4 protein [Candida orthopsilosis Co 90-125]
gi|380352005|emb|CCG22229.1| Rpb4 protein [Candida orthopsilosis]
Length = 208
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
++V K+L Y+ F+R+KN + V ++L+ + L FE+ LG L E EEA
Sbjct: 119 NEVIHKTLNYLTNFARFKNRSSCETVEKLLNDFNEHCKEYLHPFEIAQLGTLECEDAEEA 178
Query: 106 IAMVPSIKTR 115
+++PS++ +
Sbjct: 179 KSLIPSLQNK 188
>gi|159042536|ref|YP_001541788.1| RNA polymerase Rpb4 [Caldivirga maquilingensis IC-167]
gi|157921371|gb|ABW02798.1| RNA polymerase Rpb4 [Caldivirga maquilingensis IC-167]
Length = 115
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS 111
SQV +L Y++R+S+ K DA ++E+ S+Y LA + N+ P T EE A++
Sbjct: 31 SQVINITLDYLRRYSKVKPEDAEALIKELTSKYGLARITAIQVVNIMPSTPEELQAIISV 90
Query: 112 IKTRGRAHDDEAIEKMLN 129
K + D + I +LN
Sbjct: 91 EKRPFKEEDLKEIVDLLN 108
>gi|387593159|gb|EIJ88183.1| hypothetical protein NEQG_01627 [Nematocida parisii ERTm3]
gi|387596128|gb|EIJ93750.1| hypothetical protein NEPG_01322 [Nematocida parisii ERTm1]
Length = 116
Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 20 KAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE 79
KAK + + E II++ + +D F+ L+Y++ +NP +VR
Sbjct: 10 KAKSISSAEALIIVERTRMDRRMEGND-------AFQSILKYLRLCPSPRNPSWAERVRR 62
Query: 80 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLI 134
L + ++E ++ NL PE +A A++PS+ D+ +++ +LN +S I
Sbjct: 63 TLVSGGMTDYEASLIINLSPERHIDAKALIPSLNR----MDNYSLDTLLNSISDI 113
>gi|354543642|emb|CCE40363.1| hypothetical protein CPAR2_104010 [Candida parapsilosis]
Length = 208
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
++V K+L Y+ F+R+KN + V ++L+ + L FE+ LG L E EEA
Sbjct: 119 NEVIHKTLNYLTNFARFKNRSSCETVEKLLNDFNEHCKEYLHPFEIAQLGTLECEDAEEA 178
Query: 106 IAMVPSIKTR 115
+++PS++ +
Sbjct: 179 KSLIPSLQNK 188
>gi|238882243|gb|EEQ45881.1| hypothetical protein CAWG_04219 [Candida albicans WO-1]
Length = 269
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
+++ K+L ++ F+R+KN + V ++L+ + L FEL LG L E EEA
Sbjct: 180 NEIVHKTLNFLTNFARFKNRSSCETVEKLLNDFSEHCNEPLHPFELAQLGTLECEDPEEA 239
Query: 106 IAMVPSIKTR 115
+++PS++ +
Sbjct: 240 KSLIPSLQNK 249
>gi|50548611|ref|XP_501775.1| YALI0C12793p [Yarrowia lipolytica]
gi|49647642|emb|CAG82085.1| YALI0C12793p [Yarrowia lipolytica CLIB122]
Length = 178
Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 34/141 (24%)
Query: 5 EEENAAELKIGDEF-----------LKAKCLMNCEVAIILDHKYEQLQQTSDDPMN---- 49
++E+AA+LK+G EF L E +++H L++ +D +
Sbjct: 22 QDEDAAQLKLGPEFDVTQYTHDGFETALTALSTSEARSLINHT---LKKRKNDALGIENT 78
Query: 50 -----------QVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ----LAEFELCVL 94
+ V K+ +Y+ FSR++ V V +IL R+Q L FE+ L
Sbjct: 79 EDDTLDDEEEINANDVLRKTREYMNIFSRFREQQKVAAVAQIL-RHQDNADLHPFEIAQL 137
Query: 95 GNLCPETVEEAIAMVPSIKTR 115
G L + EEA ++PS+ +
Sbjct: 138 GTLSCDGAEEAKTLIPSLAAK 158
>gi|68491177|ref|XP_710596.1| RNA polymerase II fourth largest subunit fragment [Candida albicans
SC5314]
gi|68491206|ref|XP_710583.1| RNA polymerase II fourth largest subunit fragment [Candida albicans
SC5314]
gi|46431805|gb|EAK91331.1| RNA polymerase II fourth largest subunit fragment [Candida albicans
SC5314]
gi|46431819|gb|EAK91344.1| RNA polymerase II fourth largest subunit fragment [Candida albicans
SC5314]
Length = 137
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
+++ K+L ++ F+R+KN + V ++L+ + L FEL LG L E EEA
Sbjct: 48 NEIVHKTLNFLTNFARFKNRSSCETVEKLLNDFSEHCNEPLHPFELAQLGTLECEDPEEA 107
Query: 106 IAMVPSIKTR 115
+++PS++ +
Sbjct: 108 KSLIPSLQNK 117
>gi|241951362|ref|XP_002418403.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223641742|emb|CAX43703.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 269
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
+++ K+L ++ F+R+KN + V ++L+ + L FEL LG L E EEA
Sbjct: 180 NEIVHKTLNFLTNFARFKNRSSCETVEKLLNDFSDHCNESLHPFELAQLGTLECEDPEEA 239
Query: 106 IAMVPSIKTR 115
+++PS++ +
Sbjct: 240 KSLIPSLQNK 249
>gi|347522722|ref|YP_004780292.1| RNA polymerase Rpb4 [Pyrolobus fumarii 1A]
gi|343459604|gb|AEM38040.1| RNA polymerase Rpb4 [Pyrolobus fumarii 1A]
Length = 117
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS 111
S++ ++L Y++ FS+ + +AV+ V + + + L E+ ++ N+ P TV E A++ +
Sbjct: 31 SEIVYRTLNYLRMFSKCTSDNAVKAVERLKTEFGLNEYTCVLIVNIRPRTVYELKAILAA 90
Query: 112 IKTRGRAHDDEAIEKMLNDL 131
KT G DE ++K++ L
Sbjct: 91 AKT-GLTLTDEDLKKIIEVL 109
>gi|325968731|ref|YP_004244923.1| RNA polymerase Rpb4 [Vulcanisaeta moutnovskia 768-28]
gi|323707934|gb|ADY01421.1| RNA polymerase Rpb4 [Vulcanisaeta moutnovskia 768-28]
Length = 115
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 54 VFEKSLQYVKRFSRYKNPDAVRQ-VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSI 112
V +L Y+++FSR +PD + + E++ R+ LA+ + NL P+T +E + +
Sbjct: 35 VVNNTLNYLRKFSRI-SPDKAKDLISELMKRFGLAKLTAIQIVNLMPQTTDELRIL---L 90
Query: 113 KTRGRAHDDEAIEKMLN 129
T R D+ IE +LN
Sbjct: 91 GTEKREFSDKEIEDILN 107
>gi|126465676|ref|YP_001040785.1| DNA-directed RNA polymerase subunit F [Staphylothermus marinus F1]
gi|126014499|gb|ABN69877.1| DNA-directed RNA polymerase, subunit F [Staphylothermus marinus F1]
Length = 120
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 17 EFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76
E L+ K L N E +L +++Q+ VS + K+L Y+ FS+ + P++
Sbjct: 8 EILEEKLLSNPEAYKLLKKAVDKIQERE----GSVSMLLSKTLHYLSEFSKME-PESSEA 62
Query: 77 VREILSRYQLAEFELCVLGNLCPETVEE 104
+R +L L + + ++ N+CP+T++E
Sbjct: 63 LRNVLKNMDLKDETIIMIINICPQTLDE 90
>gi|430811367|emb|CCJ31200.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 58
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 86 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 138
L FE LG LC E EEA +VPS+ + DEA++ +L++LS +++F+
Sbjct: 8 LHSFETAQLGTLCCEEAEEARTLVPSLADK---KSDEALQTLLDELSNLRRFQ 57
>gi|395334491|gb|EJF66867.1| hypothetical protein DICSQDRAFT_151271 [Dichomitus squalens
LYAD-421 SS1]
Length = 368
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFE-LCVLGNLCPETVE-EAIAMVPSI 112
+ ++L+ + ++ NP+ + +R +L + L EF V GN+ P V A+ P
Sbjct: 87 YVRTLRLITLWNHSPNPNDIDWIR-LLPAHGLREFHWFWVRGNMVPAVVWYPAVRTAPRA 145
Query: 113 KTRGRAHDDEAIEKMLN 129
+ RGR HD E ++ +++
Sbjct: 146 RFRGRLHDSERLQSIID 162
>gi|254569986|ref|XP_002492103.1| RNA polymerase II subunit B32 [Komagataella pastoris GS115]
gi|238031900|emb|CAY69823.1| RNA polymerase II subunit B32 [Komagataella pastoris GS115]
gi|328351407|emb|CCA37806.1| DNA-directed RNA polymerase II subunit D [Komagataella pastoris CBS
7435]
Length = 186
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 45 DDPMNQVSQ------VFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ----LAEFELCVL 94
DD + +V+ V +K+L Y+ F+R+K+ + V ++L L FE+ L
Sbjct: 86 DDELAKVTSGAVANGVVKKTLDYLNTFARFKDEETCTAVDQLLHNSSDCSVLHPFEIAQL 145
Query: 95 GNLCPETVEEAIAMVPSIKTR 115
+L E V+EAI ++PS+ +
Sbjct: 146 SSLGCEDVDEAITLIPSLAAK 166
>gi|149245180|ref|XP_001527124.1| hypothetical protein LELG_01953 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449518|gb|EDK43774.1| hypothetical protein LELG_01953 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 226
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQ------LAEFELCVLGNLCPETVEEA 105
+++ K+L Y+ F+R+KN + V ++++ + L FE+ LG L E EEA
Sbjct: 137 NEIMHKTLNYLTNFARFKNRLSCETVEKLVNDFNDHCTEVLHPFEIAQLGTLECEDAEEA 196
Query: 106 IAMVPSIKTR 115
+++PS+ +
Sbjct: 197 KSLIPSLNNK 206
>gi|402471787|gb|EJW05341.1| hypothetical protein EDEG_00611 [Edhazardia aedis USNM 41457]
Length = 107
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 54 VFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113
+ E ++Y+ F K D + +R L ++ L++ E+ ++ ++ PE E +++VPS+K
Sbjct: 28 IHESVVKYLSSFDSIKTKDVAQNLRTHLLKFNLSQEEVALIASILPEYKSEVLSLVPSLK 87
Query: 114 TRGRAHDDEAIEKML 128
DD I++++
Sbjct: 88 RL----DDVVIDQIV 98
>gi|301100948|ref|XP_002899563.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262103871|gb|EEY61923.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 499
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 45 DDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFEL 91
D P+ + + S +Y++ F R KNPD V QV +++ RY+ E E
Sbjct: 146 DPPVRGFRRAWGDSREYLRAFYRQKNPDKVDQVDQVMDRYKGREDEF 192
>gi|378755722|gb|EHY65748.1| hypothetical protein NERG_01355 [Nematocida sp. 1 ERTm2]
Length = 116
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 40 LQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCP 99
+++T D + ++ F+ L+Y++ +N +VR L + ++E ++ NL P
Sbjct: 23 VEKTRMDRRMEGNEAFQSILKYLRVCPSPRNTSWAERVRRTLVSGGMTDYEASLVINLSP 82
Query: 100 ETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLI 134
E +A A++PS+ D+ A++ +LN +S I
Sbjct: 83 ERNTDAKALIPSLS----RMDNYALDALLNTISEI 113
>gi|71663674|ref|XP_818827.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884099|gb|EAN96976.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 169
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 76 QVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSI 112
++ L ++ FE+ LG LCP++VEEA+ +VPS+
Sbjct: 115 EIHGTLKTARMKPFEVVSLGTLCPKSVEEALVLVPSL 151
>gi|71420426|ref|XP_811486.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876155|gb|EAN89635.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 169
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 76 QVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSI 112
++ L ++ FE+ LG LCP++VEEA+ +VPS+
Sbjct: 115 EIHGTLKTARMKPFEVVSLGTLCPKSVEEALVLVPSL 151
>gi|300708648|ref|XP_002996499.1| hypothetical protein NCER_100401 [Nosema ceranae BRL01]
gi|239605806|gb|EEQ82828.1| hypothetical protein NCER_100401 [Nosema ceranae BRL01]
Length = 118
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 42/74 (56%)
Query: 42 QTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET 101
++S D + ++ +++L YV++F + + +R L E E+ +LG+L P++
Sbjct: 29 RSSVDNRSASYKILKQTLNYVEKFCKIEEKSLADDLRSSLFNCGCNEVEIALLGSLFPQS 88
Query: 102 VEEAIAMVPSIKTR 115
++EA ++PS+ +
Sbjct: 89 IDEAKMLIPSLSDK 102
>gi|297526048|ref|YP_003668072.1| RNA polymerase Rpb4 [Staphylothermus hellenicus DSM 12710]
gi|297254964|gb|ADI31173.1| RNA polymerase Rpb4 [Staphylothermus hellenicus DSM 12710]
Length = 120
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 22 KCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREIL 81
K L N E +L +++Q+ VS + K+L Y+ FS+ + P++ +R +L
Sbjct: 13 KLLSNPEAYKLLKKAVDKIQERE----GSVSMLLSKTLHYLSEFSKME-PESSEALRNVL 67
Query: 82 SRYQLAEFELCVLGNLCPETVEE 104
L + + ++ N+CP+T++E
Sbjct: 68 KNMDLKDETIVMIINICPQTLDE 90
>gi|321262671|ref|XP_003196054.1| hypothetical protein CGB_I1280W [Cryptococcus gattii WM276]
gi|317462529|gb|ADV24267.1| Hypothetical protein CGB_I1280W [Cryptococcus gattii WM276]
Length = 152
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE+A +L+ G EF + + L EVA +L Q P N+ ++ L R
Sbjct: 35 QEEDATKLQFG-EFAEGEALTLTEVATLLK-AARQAPNVPPAPDNKYARSPSSRLALSAR 92
Query: 65 FSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA- 123
L +FE+ + +L PE VE A+A++PS++ + ++EA
Sbjct: 93 HGF------------------LNKFEIAQIMSLRPERVEVAVALIPSLERYAQGDENEAQ 134
Query: 124 IEKMLNDLSLIKKF 137
++ +L+D+ + ++
Sbjct: 135 LQSLLDDVRSMVRY 148
>gi|307594673|ref|YP_003900990.1| RNA polymerase Rpb4 [Vulcanisaeta distributa DSM 14429]
gi|307549874|gb|ADN49939.1| RNA polymerase Rpb4 [Vulcanisaeta distributa DSM 14429]
Length = 115
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 53 QVFEKSLQYVKRFSRYKNPDAVRQ-VREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS 111
+V +L Y+++FS+ PD R+ + E++ R+ LA + +L P+T +E ++ +
Sbjct: 34 EVVNNTLDYLRKFSKV-GPDKARELISELMKRFGLARLTTIQIVDLMPQTADELRVLLGA 92
Query: 112 IKTRGRAHDDEAIEKMLN 129
K R D+ +E++LN
Sbjct: 93 EK---REFSDKDVEEILN 107
>gi|443916881|gb|ELU37814.1| hypothetical protein AG1IA_08154 [Rhizoctonia solani AG-1 IA]
Length = 51
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHK 36
EEE+AA LK+G EF A CL+ EV +L+H+
Sbjct: 11 EEEDAAALKLGSEFNNAGCLLISEVKYLLEHR 42
>gi|312112465|ref|YP_003990781.1| geranylgeranylglyceryl phosphate synthase family protein
[Geobacillus sp. Y4.1MC1]
gi|336236934|ref|YP_004589550.1| geranylgeranylglyceryl phosphate synthase [Geobacillus
thermoglucosidasius C56-YS93]
gi|423721416|ref|ZP_17695598.1| geranylgeranylglyceryl phosphate synthase family protein
[Geobacillus thermoglucosidans TNO-09.020]
gi|311217566|gb|ADP76170.1| geranylgeranylglyceryl phosphate synthase family protein
[Geobacillus sp. Y4.1MC1]
gi|335363789|gb|AEH49469.1| geranylgeranylglyceryl phosphate synthase family protein
[Geobacillus thermoglucosidasius C56-YS93]
gi|383365787|gb|EID43080.1| geranylgeranylglyceryl phosphate synthase family protein
[Geobacillus thermoglucosidans TNO-09.020]
Length = 228
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 24/117 (20%)
Query: 18 FLKAKCLM--NCEVAIILDHKYEQLQQTSDDPMN---QVSQVFEKSLQYVKRFSRYKNPD 72
F++ C++ +C+ A++ D E LQ+ DD + ++ + YV+ Y NP
Sbjct: 114 FMEGYCILHKDCKAAVLTDANTE-LQE--DDVIAYALMAEHMYRLPIFYVEYSGSYGNPQ 170
Query: 73 AVRQVREILSRYQL------------AEFELC----VLGNLCPETVEEAIAMVPSIK 113
V++V+++L + QL AE C V+GN+ E + +A+A V ++K
Sbjct: 171 LVQRVKQVLKQTQLFYGGGIKTEKQAAEMAQCADTIVVGNVIYEDINKALATVKAVK 227
>gi|449302518|gb|EMC98527.1| hypothetical protein BAUCODRAFT_66730 [Baudoinia compniacensis UAMH
10762]
Length = 516
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 23 CLMNCEVAIIL-----DHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQV 77
C M+ + I+L H +Q++Q + M + + + + +++ F + ++V +
Sbjct: 61 CYMSSVLQILLFCTPFYHFLDQVRQRTVHSMKSDTPLVDAMIMFMRDFKVLASAESVEAL 120
Query: 78 REILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
R+ L + QL +F V PE V EA+ +P + R H +A E
Sbjct: 121 RKTLKQEQLEQFGEPV----TPEYVYEAVRDLPRFQNMRRGHQQDAEE 164
>gi|378733222|gb|EHY59681.1| DNA-directed RNA polymerase II subunit D [Exophiala dermatitidis
NIH/UT8656]
Length = 152
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 7 ENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFS 66
E A LK+G EF L E IIL + + + ++ K+ Y++ F+
Sbjct: 18 EAGAVLKLG-EFQNEVTLNLSEARIILQKTL--ATRAARGGHYEETETTAKTRDYLEIFA 74
Query: 67 RYKNPDAVRQVREILSRY--QLAEFELCVLGNLCPETVEEAIAMVPSIK 113
+K +QV I++ Y L FE LG+L P +EA A++PS++
Sbjct: 75 VFKELAEAQQVEGIINSYGENLERFEKSQLGSLVPTCSDEAKALIPSLE 123
>gi|58265956|ref|XP_570134.1| hypothetical protein CND05580 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57226367|gb|AAW42827.1| hypothetical protein CND05580 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 162
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 31/136 (22%)
Query: 5 EEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKR 64
+EE+A +L+ GD F + + L EVA +L + +Q + P
Sbjct: 51 QEEDATKLQFGD-FAEGEALTLTEVATLL----KAARQAPNVP----------------- 88
Query: 65 FSRYKNPDAVRQVREILSRYQ--LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 122
P +R LS L +FE+ + +L PE VE A+A++PS++ + ++E
Sbjct: 89 ------PAPDNNMRTALSARHGFLNKFEIAQIMSLRPERVEVAVALIPSLERYAQGDENE 142
Query: 123 A-IEKMLNDLSLIKKF 137
A ++ +L+D+ + ++
Sbjct: 143 AQLQSLLDDVRSMVRY 158
>gi|342306201|dbj|BAK54290.1| DNA-directed RNA polymerase subunit F [Sulfolobus tokodaii str. 7]
Length = 114
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 47/81 (58%), Gaps = 9/81 (11%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVR---QVREILSRYQLAEFELCVLGNLCPETVEEAIAM 108
S + +++ +Y+ ++ + DA++ +++EI+ R + V+ ++CP T+EE ++
Sbjct: 32 STILQRTFEYLNSVAKCSSEDALKIMDELKEIIQREDVR----AVIASICPTTIEEVRSI 87
Query: 109 VPSIKTRGRAHDDEAIEKMLN 129
+ + G+ + E I+K++N
Sbjct: 88 L--VLDSGKTYTTEQIQKIIN 106
>gi|15920670|ref|NP_376339.1| hypothetical protein ST0458 [Sulfolobus tokodaii str. 7]
Length = 117
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 47/81 (58%), Gaps = 9/81 (11%)
Query: 52 SQVFEKSLQYVKRFSRYKNPDAVR---QVREILSRYQLAEFELCVLGNLCPETVEEAIAM 108
S + +++ +Y+ ++ + DA++ +++EI+ R + V+ ++CP T+EE ++
Sbjct: 35 STILQRTFEYLNSVAKCSSEDALKIMDELKEIIQREDVR----AVIASICPTTIEEVRSI 90
Query: 109 VPSIKTRGRAHDDEAIEKMLN 129
+ + G+ + E I+K++N
Sbjct: 91 L--VLDSGKTYTTEQIQKIIN 109
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,906,872,448
Number of Sequences: 23463169
Number of extensions: 64281189
Number of successful extensions: 184955
Number of sequences better than 100.0: 409
Number of HSP's better than 100.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 184372
Number of HSP's gapped (non-prelim): 458
length of query: 138
length of database: 8,064,228,071
effective HSP length: 103
effective length of query: 35
effective length of database: 9,942,488,960
effective search space: 347987113600
effective search space used: 347987113600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)