BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032568
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D7M8|RPB4_MOUSE DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus
GN=Polr2d PE=2 SV=2
Length = 142
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>sp|O15514|RPB4_HUMAN DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens
GN=POLR2D PE=1 SV=1
Length = 142
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 67
Query: 62 VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +D
Sbjct: 68 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 124
Query: 122 EAIEKMLNDLSLIKKFE 138
E ++++L+D+ + F+
Sbjct: 125 EELQQILDDIQTKRSFQ 141
>sp|Q54S04|RPB4_DICDI DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium
discoideum GN=polr2d PE=3 SV=1
Length = 155
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 89/147 (60%), Gaps = 17/147 (11%)
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHK----------YEQ---LQQTSDDPMNQ 50
+EEE+ LK + AK L+N EVAI+L+H+ + Q L + +N
Sbjct: 12 QEEEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSIND 71
Query: 51 VSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVP 110
+ + F K+L Y ++FSRYKN +++QVR LS+ L EFE+ L NLCPE +EA +++P
Sbjct: 72 IIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIP 131
Query: 111 SIKTRGRAHDDEAIEKMLNDLSLIKKF 137
S+K + DDE ++ +L++LS ++KF
Sbjct: 132 SLK---KMEDDE-LQAILDELSNLRKF 154
>sp|Q9VEA5|RPB4_DROME DNA-directed RNA polymerase II 16 kDa polypeptide OS=Drosophila
melanogaster GN=Rpb4 PE=2 SV=5
Length = 139
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
+E+AA+L+ EF A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F
Sbjct: 11 DEDAADLQFPKEFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIE 125
++KN + + R +L + +L +FEL LGNLCPE EEA A++PS++ R +DE +
Sbjct: 69 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELR 125
Query: 126 KMLNDLS 132
++L+D+
Sbjct: 126 QILDDIG 132
>sp|O74825|RPB4_SCHPO DNA-directed RNA polymerase II subunit rpb4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb4 PE=1 SV=1
Length = 135
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 6 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDD--PMNQVSQVFEKSLQYVK 63
EE+AA+LK+G EF L E I+++ Q + ++ PM + V +K++ Y
Sbjct: 7 EEDAAQLKLGPEFENEDMLTVSEAKILIETVLAQRARETNGEIPM---TDVMKKTVAYFN 63
Query: 64 RFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 123
F+R+K +A IL + +FE LG LC E EEA ++PS+ + DD+
Sbjct: 64 VFARFKTAEATYACERILGN-RFHKFERAQLGTLCCEDAEEARTLIPSLANK---IDDQN 119
Query: 124 IEKMLNDLSLIKKFE 138
++ +L++LS ++KF+
Sbjct: 120 LQGILDELSTLRKFQ 134
>sp|P20433|RPB4_YEAST DNA-directed RNA polymerase II subunit RPB4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB4 PE=1
SV=1
Length = 221
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 FEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT 114
+ ++QY+ FSR+++ + V V ++L L FE+ LG+L +T +EA ++PS+
Sbjct: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN- 199
Query: 115 RGRAHDDEAIEKMLNDLS 132
+ DDE +E++L +LS
Sbjct: 200 -NKISDDE-LERILKELS 215
>sp|O94441|YPP1_SCHPO Putative cargo-transport protein ypp1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ypp1 PE=1 SV=1
Length = 862
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 47 PMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAI 106
P N + +F ++QY +R + VR++ E+ +Y + + L VL C E I
Sbjct: 491 PTN-TNALFHLAMQYSERRAITDAMQIVRRLLEVNPKYSIVSWHLLVLCVSCSEQYAAGI 549
Query: 107 AMVPSI-KTRGRAH--DDEAIEKMLNDLSL 133
++ S+ +T G H +D IE L +L+
Sbjct: 550 KLIDSVFETWGINHVNEDGTIEISLTNLTF 579
>sp|B2FMC1|METX_STRMK Homoserine O-acetyltransferase OS=Stenotrophomonas maltophilia
(strain K279a) GN=metX PE=3 SV=1
Length = 370
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 42 QTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEF-ELCVLGNLCPE 100
QT DDP QV + +RF R+ +P+ + + + LAE+ + VL L
Sbjct: 244 QTDDDPFGLEFQVESYLEGHARRFVRFFDPNCYLYLSRSMDWFDLAEYADGDVLAGLAKI 303
Query: 101 TVEEAIAM 108
VE+A+A+
Sbjct: 304 RVEKALAI 311
>sp|Q92AP8|PCRB_LISIN Heptaprenylglyceryl phosphate synthase OS=Listeria innocua serovar
6a (strain CLIP 11262) GN=pcrB PE=3 SV=1
Length = 225
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 26/108 (24%)
Query: 25 MNCEVAIIL--DHKYEQLQQTSDDPMNQ--------VSQVFEKSLQYVKRFSRYKNPDAV 74
+ E +IL D K QL + D ++ +F + YV+ Y +P+AV
Sbjct: 107 ITSEGYVILNKDAKVAQLTEAKTDLTDEDIIAYARLAENIFRLPIFYVEYSGMYGDPEAV 166
Query: 75 RQVREIL------------SRYQLAEF----ELCVLGNLCPETVEEAI 106
R+V E+L S+ Q AE + ++GN+ E +E+A+
Sbjct: 167 RKVSEVLSDTEFWYGGGIRSKEQAAEMAKYADTIIVGNIIYEDLEKAL 214
>sp|Q9WUP7|UCHL5_MOUSE Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Mus musculus
GN=Uchl5 PE=2 SV=2
Length = 329
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 23 CLMNCEVAIILD--HKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
C V+++L+ H+ L +T + + SQ F+ +++ + N D +RQV
Sbjct: 88 CATQAIVSVLLNCTHQDVHLGETLSE-FKEFSQSFDAAMKGLA----LSNSDVIRQVHNS 142
Query: 81 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
+R Q+ EF+ P E+A V + GR ++ + + + DL
Sbjct: 143 FARQQMFEFD-----TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLG 189
>sp|Q9P6K5|DML1_SCHPO Protein dml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dml1 PE=1 SV=1
Length = 465
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 40 LQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRY 84
++ T+D +N Q KSL +RF + + D + ++REILS Y
Sbjct: 421 VEATNDGQINSHIQGLTKSLN--RRFVSFVDQDELEEIREILSSY 463
>sp|A7HT52|ATPB_PARL1 ATP synthase subunit beta OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=atpD PE=3 SV=1
Length = 478
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 46 DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLG 95
DP++ S++ E R ++ D RQV+EIL RY+ + + +LG
Sbjct: 349 DPLDSTSRILEP------RVVGQEHYDTARQVQEILQRYKSLQDIIAILG 392
>sp|B8D5M3|EF1B_DESK1 Elongation factor 1-beta OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=ef1b PE=3 SV=1
Length = 90
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 11 ELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFS 66
ELK+ DE A L +AII+ + E +T ++ ++QV V + ++YV R S
Sbjct: 35 ELKMWDEEPIAFGLKALRLAIIMPEQTEGGTETLENLISQVQGVSQVEVEYVNRLS 90
>sp|A4IJY4|PCRB_GEOTN Heptaprenylglyceryl phosphate synthase OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=pcrB PE=3 SV=1
Length = 239
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 53 QVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQL------------AEF----ELCVLGN 96
+++ + Y++ Y NP V +V+ LSR QL AE + V+GN
Sbjct: 151 HLYKLPIFYLEYSGTYGNPSLVEKVKRALSRTQLVYGGGIMTPEQAAEMARYADTVVVGN 210
Query: 97 LCPETVEEAIAMVPSIK 113
++ E A+A V ++K
Sbjct: 211 AVYDSFESALATVEAVK 227
>sp|Q7ZXH2|NSE2_XENLA E3 SUMO-protein ligase NSE2 OS=Xenopus laevis GN=nsmce2 PE=2 SV=1
Length = 238
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 38/123 (30%)
Query: 32 ILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFEL 91
++ KY +Q+ +DD + L+ RF ++K+ Q+RE+ R Q+ E E
Sbjct: 97 LVQEKYATIQKKNDD----------EDLKKNDRFVQFKD-----QLREM--RKQMGEKEE 139
Query: 92 CVLGNLCPETVEEAIAMVPS----------------IKTR--GRAHDDEAIEKMLNDLSL 133
G+ E V+E IA++PS +K + G ++ EAIE+M+ D
Sbjct: 140 ---GDAAFENVDEDIAVLPSQQNLTCPITQMEMTNPVKNKVCGHTYEKEAIERMIQDRHQ 196
Query: 134 IKK 136
KK
Sbjct: 197 KKK 199
>sp|Q6BLT2|PALA_DEBHA pH-response regulator protein palA/RIM20 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=RIM20 PE=3 SV=2
Length = 766
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 6 EENAA--ELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
EENAA E D + K + N ++ + D K+ Q+ + ++ ++Q FE Q+
Sbjct: 605 EENAAIDERSFEDVYAKHITMFNSDLRFLEDSKHAQIALEGN--IDDLNQEFESEYQHTN 662
Query: 64 RFSRYKNPDAVRQVREILSRY 84
S+YK + ++ + + ++Y
Sbjct: 663 NESQYKRQEVLQTLENVYTKY 683
>sp|Q8SRG3|AMP12_ENCCU Probable M1 family aminopeptidase 2 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU08_0070 PE=3 SV=1
Length = 864
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 54 VFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFE---LCVLGNLCPETVEEAIAMVP 110
V +++L Y+ +YKN D RE+++ + + E L V+GNL +VE+ ++
Sbjct: 708 VVDENLGYM--MDKYKNGDTPGMRREVMNGFSGIKREENFLDVVGNLSQFSVEDIGVVIG 765
Query: 111 SIKTRGRAHDDEAIEKMLN 129
SI +RG A D +E +++
Sbjct: 766 SI-SRGGAFRDAMVEYVVS 783
>sp|Q8SQI6|AMP11_ENCCU Probable M1 family aminopeptidase 1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU01_0140 PE=3 SV=1
Length = 864
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 54 VFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFE---LCVLGNLCPETVEEAIAMVP 110
V +++L Y+ +YKN D RE+++ + + E L V+GNL +VE+ ++
Sbjct: 708 VVDENLGYM--MDKYKNGDTPGMRREVMNGFSGIKREENFLDVVGNLSQFSVEDIGVVIG 765
Query: 111 SIKTRGRAHDDEAIEKMLN 129
SI +RG A D +E +++
Sbjct: 766 SI-SRGGAFRDAMVEYVVS 783
>sp|P11536|E74EB_DROME Ecdysone-induced protein 74EF isoform B OS=Drosophila melanogaster
GN=Eip74EF PE=2 SV=2
Length = 883
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 39 QLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLC 98
Q +T +DP + + EK+ Q VK + P A+ +++R + V
Sbjct: 92 QQAKTQEDPTMKDQDMLEKTRQEVKDPVNVEEPGAIVDTESVMARQSPSP----VASTKV 147
Query: 99 PETVEEAIAMVPSIKTRGRAHDDEAIEKMLND 130
PE++EE P ++ D+E E + +D
Sbjct: 148 PESLEEISNKSPPVQ-----EDEEESESVASD 174
>sp|P47460|HMW2_MYCGE Cytadherence high molecular weight protein 2 OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=hmw2 PE=3 SV=1
Length = 1805
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 41 QQTSDDPMNQVSQVFEKSLQYVKRFSRYKNP-DAVRQVREILSR 83
QQ DD Q+ Q+FE+ LQ++++ RY+N + +R+ R +L +
Sbjct: 1627 QQKQDDNTLQIRQLFEQQLQFMQQ--RYENELNELRRQRNLLEK 1668
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,014,726
Number of Sequences: 539616
Number of extensions: 1628760
Number of successful extensions: 5156
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5138
Number of HSP's gapped (non-prelim): 38
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)