Query 032570
Match_columns 138
No_of_seqs 132 out of 1189
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 03:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01162 purE phosphoribosyla 100.0 4.2E-62 9.1E-67 375.2 15.7 138 1-138 5-143 (156)
2 COG0041 PurE Phosphoribosylcar 100.0 3.6E-62 7.8E-67 374.4 14.8 138 1-138 9-147 (162)
3 PF00731 AIRC: AIR carboxylase 100.0 8.8E-59 1.9E-63 354.9 12.1 138 1-138 7-145 (150)
4 PLN02948 phosphoribosylaminoim 100.0 2E-52 4.2E-57 372.6 15.7 138 1-138 417-555 (577)
5 COG1691 NCAIR mutase (PurE)-re 100.0 1.2E-31 2.6E-36 217.1 9.6 118 2-124 125-250 (254)
6 KOG2835 Phosphoribosylamidoimi 99.9 1.9E-24 4.1E-29 184.6 3.6 135 1-137 215-350 (373)
7 cd08550 GlyDH-like Glycerol_de 96.9 0.0052 1.1E-07 51.8 7.9 75 8-82 36-111 (349)
8 cd08170 GlyDH Glycerol dehydro 96.8 0.0077 1.7E-07 50.7 8.8 75 8-82 36-111 (351)
9 PRK00843 egsA NAD(P)-dependent 96.6 0.011 2.5E-07 50.0 8.2 72 9-82 49-121 (350)
10 PRK09423 gldA glycerol dehydro 96.5 0.016 3.4E-07 49.3 8.4 74 9-82 44-118 (366)
11 cd08175 G1PDH Glycerol-1-phosp 96.4 0.012 2.7E-07 49.4 7.1 72 10-82 39-114 (348)
12 TIGR01357 aroB 3-dehydroquinat 96.2 0.023 5E-07 47.8 7.9 73 9-81 35-116 (344)
13 cd08171 GlyDH-like2 Glycerol d 96.2 0.02 4.3E-07 48.3 7.4 75 8-82 36-112 (345)
14 cd07766 DHQ_Fe-ADH Dehydroquin 96.2 0.026 5.5E-07 46.9 7.8 74 8-82 37-114 (332)
15 cd08195 DHQS Dehydroquinate sy 96.2 0.034 7.3E-07 46.9 8.5 74 8-81 38-120 (345)
16 cd08551 Fe-ADH iron-containing 96.1 0.023 5E-07 48.1 7.4 75 8-82 38-132 (370)
17 cd08173 Gro1PDH Sn-glycerol-1- 96.0 0.049 1.1E-06 45.7 8.6 73 8-82 39-112 (339)
18 cd08194 Fe-ADH6 Iron-containin 95.8 0.039 8.5E-07 47.0 7.4 76 7-82 37-132 (375)
19 PRK15454 ethanol dehydrogenase 95.7 0.031 6.8E-07 48.3 6.6 76 7-82 63-158 (395)
20 cd08183 Fe-ADH2 Iron-containin 95.7 0.057 1.2E-06 46.0 8.1 74 9-82 35-131 (374)
21 cd08193 HVD 5-hydroxyvalerate 95.7 0.031 6.7E-07 47.6 6.3 77 6-82 39-135 (376)
22 cd08192 Fe-ADH7 Iron-containin 95.6 0.041 8.8E-07 46.7 6.8 76 7-82 38-137 (370)
23 cd08197 DOIS 2-deoxy-scyllo-in 95.6 0.065 1.4E-06 45.9 8.0 73 9-81 38-119 (355)
24 cd08549 G1PDH_related Glycerol 95.6 0.059 1.3E-06 45.3 7.6 73 9-82 39-114 (332)
25 PF06506 PrpR_N: Propionate ca 95.6 0.12 2.6E-06 39.6 8.6 107 17-136 3-122 (176)
26 PRK00002 aroB 3-dehydroquinate 95.5 0.092 2E-06 44.6 8.5 74 8-81 45-127 (358)
27 cd08182 HEPD Hydroxyethylphosp 95.5 0.086 1.9E-06 44.7 8.3 74 9-82 36-133 (367)
28 cd08199 EEVS 2-epi-5-epi-valio 95.4 0.086 1.9E-06 45.1 8.2 73 9-81 41-123 (354)
29 cd08185 Fe-ADH1 Iron-containin 95.4 0.084 1.8E-06 45.0 8.1 77 6-82 39-140 (380)
30 PRK15424 propionate catabolism 95.4 0.25 5.5E-06 44.8 11.5 118 9-137 25-153 (538)
31 cd08186 Fe-ADH8 Iron-containin 95.4 0.065 1.4E-06 45.9 7.3 74 9-82 43-137 (383)
32 cd08189 Fe-ADH5 Iron-containin 95.3 0.055 1.2E-06 46.1 6.6 75 8-82 41-136 (374)
33 cd08174 G1PDH-like Glycerol-1- 95.3 0.1 2.3E-06 43.6 8.0 73 8-82 35-109 (331)
34 TIGR02638 lactal_redase lactal 95.2 0.067 1.5E-06 45.7 6.8 76 8-83 44-141 (379)
35 cd08176 LPO Lactadehyde:propan 95.2 0.067 1.4E-06 45.7 6.7 75 8-82 43-137 (377)
36 PF00465 Fe-ADH: Iron-containi 95.2 0.073 1.6E-06 45.0 6.9 76 8-83 36-132 (366)
37 cd08187 BDH Butanol dehydrogen 95.1 0.1 2.2E-06 44.6 7.6 75 8-82 44-138 (382)
38 cd08178 AAD_C C-terminal alcoh 94.9 0.12 2.6E-06 44.5 7.4 54 8-61 36-90 (398)
39 COG2515 Acd 1-aminocyclopropan 94.9 0.15 3.2E-06 43.8 7.8 74 8-83 132-218 (323)
40 PRK14021 bifunctional shikimat 94.8 0.31 6.7E-06 44.0 10.1 73 9-81 223-304 (542)
41 cd08181 PPD-like 1,3-propanedi 94.7 0.17 3.7E-06 42.9 7.9 74 9-82 42-134 (357)
42 cd08172 GlyDH-like1 Glycerol d 94.6 0.1 2.2E-06 44.0 6.3 70 10-82 39-110 (347)
43 cd08179 NADPH_BDH NADPH-depend 94.6 0.21 4.6E-06 42.5 8.2 75 8-82 39-136 (375)
44 PRK10624 L-1,2-propanediol oxi 94.5 0.14 3E-06 43.9 7.0 77 6-82 43-141 (382)
45 cd08188 Fe-ADH4 Iron-containin 94.5 0.14 3E-06 43.8 6.9 75 8-82 43-137 (377)
46 PRK09860 putative alcohol dehy 94.4 0.13 2.8E-06 44.2 6.5 77 6-82 44-140 (383)
47 PLN02834 3-dehydroquinate synt 94.4 0.24 5.3E-06 43.6 8.4 73 9-81 115-198 (433)
48 cd08190 HOT Hydroxyacid-oxoaci 94.3 0.22 4.9E-06 43.2 7.8 55 8-62 38-93 (414)
49 cd08177 MAR Maleylacetate redu 94.2 0.083 1.8E-06 44.4 4.9 73 9-82 38-111 (337)
50 PRK06203 aroB 3-dehydroquinate 94.1 0.34 7.3E-06 42.1 8.5 73 9-81 60-146 (389)
51 cd08180 PDD 1,3-propanediol de 93.9 0.19 4.2E-06 42.0 6.5 73 9-82 38-119 (332)
52 cd08191 HHD 6-hydroxyhexanoate 93.9 0.25 5.3E-06 42.4 7.2 74 7-82 36-131 (386)
53 COG3199 Predicted inorganic po 93.7 0.53 1.1E-05 41.0 8.8 72 34-123 85-157 (355)
54 cd08169 DHQ-like Dehydroquinat 93.7 0.4 8.7E-06 40.7 8.0 72 8-81 37-118 (344)
55 PF04392 ABC_sub_bind: ABC tra 93.6 0.24 5.3E-06 40.3 6.4 71 8-80 15-89 (294)
56 COG2984 ABC-type uncharacteriz 93.5 0.29 6.2E-06 42.1 6.9 68 8-77 46-114 (322)
57 TIGR02329 propionate_PrpR prop 93.5 1.4 3E-05 39.9 11.6 116 11-137 17-143 (526)
58 cd08198 DHQS-like2 Dehydroquin 93.4 0.49 1.1E-05 41.0 8.2 72 10-81 49-134 (369)
59 PRK13055 putative lipid kinase 93.4 0.7 1.5E-05 38.8 9.0 78 2-82 14-95 (334)
60 TIGR00147 lipid kinase, YegS/R 92.8 0.69 1.5E-05 37.6 7.9 77 2-82 13-93 (293)
61 PRK11914 diacylglycerol kinase 92.6 1.1 2.3E-05 36.9 8.8 77 2-82 20-98 (306)
62 COG0695 GrxC Glutaredoxin and 92.5 0.43 9.4E-06 32.4 5.4 40 4-44 8-47 (80)
63 cd08196 DHQS-like1 Dehydroquin 92.5 0.92 2E-05 38.8 8.6 69 9-81 34-111 (346)
64 PRK10586 putative oxidoreducta 92.2 0.74 1.6E-05 39.5 7.7 70 11-83 51-121 (362)
65 COG0371 GldA Glycerol dehydrog 92.2 0.5 1.1E-05 41.2 6.6 73 10-83 46-119 (360)
66 KOG2835 Phosphoribosylamidoimi 92.2 0.19 4E-06 44.0 4.0 69 11-82 253-322 (373)
67 PF13685 Fe-ADH_2: Iron-contai 91.9 0.25 5.5E-06 40.7 4.3 121 10-132 35-178 (250)
68 cd01575 PBP1_GntR Ligand-bindi 91.7 4.7 0.0001 30.8 11.0 68 7-78 15-84 (268)
69 COG1454 EutG Alcohol dehydroge 91.7 0.9 2E-05 39.7 7.7 77 6-82 42-138 (377)
70 TIGR03702 lip_kinase_YegS lipi 91.6 1 2.2E-05 36.9 7.6 74 6-83 12-91 (293)
71 PRK15138 aldehyde reductase; P 91.5 0.81 1.8E-05 39.5 7.2 52 9-62 46-98 (387)
72 PRK13337 putative lipid kinase 91.4 1.2 2.6E-05 36.7 7.9 72 7-82 18-93 (304)
73 TIGR02189 GlrX-like_plant Glut 91.3 0.61 1.3E-05 32.7 5.2 69 3-95 14-83 (99)
74 cd06275 PBP1_PurR Ligand-bindi 91.0 5.8 0.00013 30.4 11.9 71 8-80 16-87 (269)
75 TIGR02180 GRX_euk Glutaredoxin 91.0 0.88 1.9E-05 29.4 5.5 68 4-95 6-76 (84)
76 cd08184 Fe-ADH3 Iron-containin 90.5 1.2 2.5E-05 38.1 7.1 72 11-82 39-133 (347)
77 cd01988 Na_H_Antiporter_C The 90.4 3.1 6.8E-05 28.6 8.2 53 8-63 56-108 (132)
78 cd06280 PBP1_LacI_like_4 Ligan 90.3 6.9 0.00015 30.1 11.4 69 7-78 15-83 (263)
79 cd01539 PBP1_GGBP Periplasmic 90.0 2.1 4.6E-05 34.4 8.0 71 8-78 16-88 (303)
80 PRK13805 bifunctional acetalde 89.8 1.4 3.1E-05 41.8 7.7 53 7-61 494-551 (862)
81 cd03419 GRX_GRXh_1_2_like Glut 89.7 1.9 4E-05 27.9 6.2 68 4-95 7-75 (82)
82 TIGR02417 fruct_sucro_rep D-fr 89.3 9.9 0.00022 30.5 12.2 97 8-122 77-175 (327)
83 PRK00861 putative lipid kinase 89.2 2.3 5E-05 34.8 7.7 76 2-82 14-91 (300)
84 PF10096 DUF2334: Uncharacteri 88.7 1.8 3.9E-05 35.1 6.7 51 4-54 12-73 (243)
85 PRK10481 hypothetical protein; 88.4 2.8 6.1E-05 34.2 7.6 67 11-77 143-211 (224)
86 cd01391 Periplasmic_Binding_Pr 88.3 5.1 0.00011 29.4 8.4 73 8-80 17-90 (269)
87 cd01537 PBP1_Repressors_Sugar_ 88.1 6.3 0.00014 29.5 8.9 71 8-81 16-88 (264)
88 PF00532 Peripla_BP_1: Peripla 87.7 13 0.00029 30.0 12.2 111 8-137 18-143 (279)
89 cd06298 PBP1_CcpA_like Ligand- 87.6 11 0.00023 28.8 10.5 69 7-78 15-84 (268)
90 PRK13054 lipid kinase; Reviewe 87.3 2.8 6E-05 34.5 7.0 60 8-71 18-77 (300)
91 cd06310 PBP1_ABC_sugar_binding 87.2 12 0.00026 28.9 10.3 69 8-78 16-88 (273)
92 TIGR03405 Phn_Fe-ADH phosphona 87.1 2.1 4.6E-05 36.3 6.4 75 7-83 37-137 (355)
93 cd06267 PBP1_LacI_sugar_bindin 87.0 7.4 0.00016 29.2 8.8 69 8-78 16-84 (264)
94 PF00462 Glutaredoxin: Glutare 87.0 2.3 5.1E-05 26.3 5.1 38 5-44 7-44 (60)
95 cd06321 PBP1_ABC_sugar_binding 86.8 4.5 9.7E-05 31.3 7.7 71 8-78 16-88 (271)
96 cd03418 GRX_GRXb_1_3_like Glut 86.8 3 6.5E-05 26.5 5.7 38 4-43 7-44 (75)
97 KOG3857 Alcohol dehydrogenase, 86.7 2.8 6E-05 37.3 7.0 77 7-83 84-186 (465)
98 cd06283 PBP1_RegR_EndR_KdgR_li 86.5 12 0.00027 28.4 10.9 69 7-79 15-85 (267)
99 cd06296 PBP1_CatR_like Ligand- 86.5 13 0.00028 28.5 11.4 69 6-78 14-84 (270)
100 cd06273 PBP1_GntR_like_1 This 86.1 9.3 0.0002 29.3 9.1 68 7-78 15-84 (268)
101 PRK13059 putative lipid kinase 86.1 4.2 9.1E-05 33.4 7.5 76 2-82 13-92 (295)
102 cd06323 PBP1_ribose_binding Pe 85.9 13 0.00029 28.2 11.0 69 8-78 16-86 (268)
103 PRK13951 bifunctional shikimat 85.5 3.3 7.2E-05 37.1 7.0 52 30-81 215-272 (488)
104 cd06300 PBP1_ABC_sugar_binding 85.4 6.5 0.00014 30.4 7.9 72 8-79 16-92 (272)
105 cd06290 PBP1_LacI_like_9 Ligan 85.4 15 0.00032 28.2 12.3 67 8-78 16-83 (265)
106 PF01761 DHQ_synthase: 3-dehyd 85.1 2 4.4E-05 35.5 5.2 51 31-81 8-64 (260)
107 cd06318 PBP1_ABC_sugar_binding 85.1 7.6 0.00016 30.1 8.2 68 9-78 17-86 (282)
108 PRK11175 universal stress prot 84.9 7.9 0.00017 31.0 8.5 68 11-81 72-147 (305)
109 cd06311 PBP1_ABC_sugar_binding 84.9 16 0.00035 28.3 11.6 72 8-79 16-92 (274)
110 cd01542 PBP1_TreR_like Ligand- 84.9 11 0.00023 28.8 8.8 67 8-78 16-84 (259)
111 PF13407 Peripla_BP_4: Peripla 84.7 9.9 0.00021 29.2 8.6 69 9-78 16-86 (257)
112 TIGR02190 GlrX-dom Glutaredoxi 84.5 2.9 6.4E-05 27.6 4.9 26 4-29 15-40 (79)
113 COG1597 LCB5 Sphingosine kinas 83.6 8.3 0.00018 32.2 8.3 73 6-82 18-93 (301)
114 cd06292 PBP1_LacI_like_10 Liga 83.6 18 0.00039 27.8 12.0 70 7-78 15-89 (273)
115 cd06274 PBP1_FruR Ligand bindi 83.3 18 0.0004 27.7 12.6 66 9-78 17-84 (264)
116 PRK13057 putative lipid kinase 83.3 8.7 0.00019 31.3 8.1 71 8-83 13-85 (287)
117 cd05564 PTS_IIB_chitobiose_lic 83.3 4 8.7E-05 28.5 5.4 71 9-88 15-88 (96)
118 TIGR02634 xylF D-xylose ABC tr 83.2 7.5 0.00016 31.3 7.7 67 10-78 17-85 (302)
119 cd06320 PBP1_allose_binding Pe 83.0 6.9 0.00015 30.3 7.2 72 8-79 16-89 (275)
120 PRK12361 hypothetical protein; 82.1 7.5 0.00016 34.8 7.9 77 2-83 254-332 (547)
121 cd03027 GRX_DEP Glutaredoxin ( 82.0 6.5 0.00014 25.2 5.7 36 5-42 9-44 (73)
122 PRK10653 D-ribose transporter 81.9 24 0.00051 28.0 11.3 71 7-79 42-114 (295)
123 cd03029 GRX_hybridPRX5 Glutare 81.7 3.7 8.1E-05 26.3 4.4 28 3-30 7-34 (72)
124 PRK10014 DNA-binding transcrip 81.6 26 0.00056 28.2 12.2 68 8-78 81-150 (342)
125 TIGR02181 GRX_bact Glutaredoxi 81.1 7.4 0.00016 25.2 5.8 65 4-95 6-71 (79)
126 cd01538 PBP1_ABC_xylose_bindin 81.1 16 0.00034 28.9 8.7 69 8-78 16-86 (288)
127 cd06284 PBP1_LacI_like_6 Ligan 80.8 22 0.00049 27.0 10.9 69 7-78 15-83 (267)
128 PRK10727 DNA-binding transcrip 80.7 29 0.00062 28.1 11.1 49 8-58 76-124 (343)
129 TIGR02717 AcCoA-syn-alpha acet 80.3 9 0.00019 33.7 7.6 126 2-135 184-336 (447)
130 PRK11175 universal stress prot 80.2 7.4 0.00016 31.2 6.6 67 12-82 227-302 (305)
131 cd06313 PBP1_ABC_sugar_binding 80.1 13 0.00029 29.1 7.9 69 8-78 16-86 (272)
132 PRK10423 transcriptional repre 80.0 28 0.00062 27.7 12.1 70 7-78 72-142 (327)
133 cd06281 PBP1_LacI_like_5 Ligan 79.8 24 0.00052 27.2 9.2 73 3-78 11-85 (269)
134 PRK10703 DNA-binding transcrip 79.8 19 0.0004 29.1 8.9 67 8-78 76-145 (341)
135 cd06289 PBP1_MalI_like Ligand- 79.7 23 0.0005 26.9 9.0 68 8-78 16-85 (268)
136 cd03031 GRX_GRX_like Glutaredo 79.6 5.8 0.00012 30.2 5.5 27 6-32 15-41 (147)
137 cd06277 PBP1_LacI_like_1 Ligan 79.4 26 0.00057 26.9 10.9 68 6-78 17-86 (268)
138 cd03786 GT1_UDP-GlcNAc_2-Epime 79.4 15 0.00032 29.8 8.2 78 2-79 7-119 (363)
139 cd06294 PBP1_ycjW_transcriptio 79.3 26 0.00055 26.8 12.7 67 8-79 21-90 (270)
140 PF01297 TroA: Periplasmic sol 79.0 14 0.00031 29.3 7.9 64 17-81 164-231 (256)
141 cd01541 PBP1_AraR Ligand-bindi 78.6 28 0.00061 26.8 10.7 71 6-78 14-89 (273)
142 TIGR00736 nifR3_rel_arch TIM-b 78.6 25 0.00055 28.6 9.3 95 6-104 119-221 (231)
143 TIGR02194 GlrX_NrdH Glutaredox 78.6 8.5 0.00018 24.7 5.4 34 6-41 8-41 (72)
144 PRK10116 universal stress prot 78.5 20 0.00044 25.1 7.9 62 18-82 74-141 (142)
145 cd00763 Bacterial_PFK Phosphof 78.2 5.7 0.00012 33.8 5.6 48 34-82 77-125 (317)
146 cd06317 PBP1_ABC_sugar_binding 78.1 19 0.00041 27.6 8.1 69 8-78 17-87 (275)
147 cd07943 DRE_TIM_HOA 4-hydroxy- 77.9 8 0.00017 31.3 6.2 64 3-67 107-172 (263)
148 COG0337 AroB 3-dehydroquinate 77.1 14 0.0003 32.3 7.7 122 9-135 48-202 (360)
149 TIGR01481 ccpA catabolite cont 76.9 36 0.00078 27.2 10.8 67 9-78 77-144 (329)
150 cd06305 PBP1_methylthioribose_ 76.7 19 0.0004 27.7 7.7 69 8-78 16-86 (273)
151 PRK03202 6-phosphofructokinase 76.7 5 0.00011 34.2 4.8 49 34-82 78-126 (320)
152 cd06309 PBP1_YtfQ_like Peripla 76.5 22 0.00047 27.5 8.1 70 7-78 15-86 (273)
153 TIGR00853 pts-lac PTS system, 76.3 3.5 7.5E-05 29.0 3.2 68 5-82 16-85 (95)
154 TIGR00365 monothiol glutaredox 76.1 11 0.00024 26.2 5.8 23 5-27 25-47 (97)
155 cd05212 NAD_bind_m-THF_DH_Cycl 76.0 6.2 0.00013 29.7 4.7 31 26-61 53-83 (140)
156 cd06322 PBP1_ABC_sugar_binding 75.8 21 0.00046 27.3 7.8 70 8-79 16-87 (267)
157 PRK09982 universal stress prot 75.7 19 0.00041 25.9 7.1 44 38-82 92-141 (142)
158 TIGR02482 PFKA_ATP 6-phosphofr 75.3 7 0.00015 33.1 5.3 48 34-82 76-125 (301)
159 cd03045 GST_N_Delta_Epsilon GS 74.9 5.8 0.00012 25.0 3.7 35 8-42 10-44 (74)
160 COG0589 UspA Universal stress 74.9 25 0.00053 24.3 8.8 72 7-81 73-153 (154)
161 cd02911 arch_FMN Archeal FMN-b 74.7 28 0.0006 28.1 8.5 69 6-77 124-196 (233)
162 PF02954 HTH_8: Bacterial regu 74.2 2 4.4E-05 25.6 1.3 20 116-135 23-42 (42)
163 cd06319 PBP1_ABC_sugar_binding 74.1 24 0.00053 27.1 7.8 69 8-78 16-86 (277)
164 PRK15408 autoinducer 2-binding 74.1 51 0.0011 27.5 11.1 69 10-79 42-112 (336)
165 TIGR00236 wecB UDP-N-acetylglu 74.0 8 0.00017 31.9 5.3 67 11-78 41-116 (365)
166 cd06314 PBP1_tmGBP Periplasmic 73.9 39 0.00084 26.1 11.7 69 8-78 15-85 (271)
167 PLN02958 diacylglycerol kinase 73.9 23 0.0005 31.7 8.5 65 3-71 124-189 (481)
168 cd03028 GRX_PICOT_like Glutare 73.8 15 0.00033 24.8 5.8 63 6-95 22-85 (90)
169 PRK10329 glutaredoxin-like pro 73.7 12 0.00027 25.1 5.3 35 5-41 9-43 (81)
170 cd01989 STK_N The N-terminal d 73.6 26 0.00057 24.7 7.3 51 11-64 68-118 (146)
171 cd03059 GST_N_SspA GST_N famil 73.6 7.4 0.00016 24.4 4.0 28 5-32 7-34 (73)
172 PRK12757 cell division protein 73.1 18 0.00039 30.3 7.1 59 1-59 189-256 (256)
173 PRK11303 DNA-binding transcrip 73.0 46 0.001 26.5 12.0 67 9-78 79-147 (328)
174 PF00781 DAGK_cat: Diacylglyce 73.0 16 0.00035 26.1 6.1 82 10-98 17-104 (130)
175 PRK10638 glutaredoxin 3; Provi 72.8 14 0.00031 24.3 5.4 65 3-94 8-73 (83)
176 cd06293 PBP1_LacI_like_11 Liga 72.8 41 0.00088 25.8 10.6 68 7-78 15-84 (269)
177 PF02882 THF_DHG_CYH_C: Tetrah 72.7 7.6 0.00017 30.0 4.5 50 26-81 61-110 (160)
178 cd06285 PBP1_LacI_like_7 Ligan 72.5 41 0.00089 25.7 12.6 69 7-79 15-85 (265)
179 cd06270 PBP1_GalS_like Ligand 72.2 42 0.00091 25.7 12.1 68 8-79 16-85 (268)
180 PRK09230 cytosine deaminase; P 72.2 39 0.00085 29.3 9.3 100 7-110 194-315 (426)
181 PRK09864 putative peptidase; P 71.9 44 0.00096 28.9 9.5 38 100-137 317-354 (356)
182 cd06301 PBP1_rhizopine_binding 71.7 41 0.00088 25.8 8.5 68 9-78 17-87 (272)
183 PRK08195 4-hyroxy-2-oxovalerat 71.6 22 0.00047 30.3 7.5 64 4-67 111-175 (337)
184 cd01540 PBP1_arabinose_binding 71.5 26 0.00057 27.2 7.5 67 9-78 17-85 (289)
185 PF00763 THF_DHG_CYH: Tetrahyd 71.1 15 0.00034 26.4 5.7 41 7-47 44-84 (117)
186 PF02006 DUF137: Protein of un 70.9 13 0.00027 29.7 5.4 73 10-84 20-101 (178)
187 PRK02645 ppnK inorganic polyph 70.5 11 0.00023 31.7 5.3 72 5-80 16-89 (305)
188 cd00363 PFK Phosphofructokinas 70.3 7.4 0.00016 33.2 4.4 48 34-81 77-130 (338)
189 cd05565 PTS_IIB_lactose PTS_II 70.1 18 0.00038 25.8 5.6 66 7-81 14-81 (99)
190 TIGR03217 4OH_2_O_val_ald 4-hy 69.9 28 0.0006 29.7 7.8 64 4-67 110-174 (333)
191 cd06315 PBP1_ABC_sugar_binding 69.7 28 0.00061 27.3 7.4 69 8-78 17-87 (280)
192 PRK09492 treR trehalose repres 69.5 55 0.0012 26.0 10.3 49 7-57 78-126 (315)
193 TIGR02955 TMAO_TorT TMAO reduc 69.4 35 0.00076 27.1 7.9 68 9-78 17-87 (295)
194 PF04028 DUF374: Domain of unk 69.1 16 0.00035 24.8 5.0 47 10-58 22-68 (74)
195 cd03174 DRE_TIM_metallolyase D 69.0 13 0.00029 29.2 5.3 50 6-55 113-165 (265)
196 cd06302 PBP1_LsrB_Quorum_Sensi 68.9 31 0.00067 27.5 7.5 69 8-78 16-87 (298)
197 cd03041 GST_N_2GST_N GST_N fam 68.9 17 0.00036 23.6 5.0 25 6-30 9-33 (77)
198 PHA03050 glutaredoxin; Provisi 68.5 21 0.00045 25.5 5.8 68 3-95 19-91 (108)
199 COG1609 PurR Transcriptional r 68.2 70 0.0015 26.7 13.7 113 7-137 74-199 (333)
200 PRK10076 pyruvate formate lyas 68.2 27 0.00058 27.9 6.9 50 4-54 141-211 (213)
201 cd00570 GST_N_family Glutathio 68.1 15 0.00032 21.6 4.3 30 7-36 9-38 (71)
202 COG0205 PfkA 6-phosphofructoki 68.0 9.8 0.00021 33.0 4.7 49 33-81 78-127 (347)
203 PRK13761 hypothetical protein; 67.9 14 0.00031 30.7 5.4 72 10-84 83-162 (248)
204 PRK10355 xylF D-xylose transpo 67.5 35 0.00077 28.1 7.8 68 9-78 43-112 (330)
205 cd04509 PBP1_ABC_transporter_G 67.3 43 0.00092 25.3 7.7 72 9-81 22-100 (299)
206 cd06308 PBP1_sensor_kinase_lik 66.6 48 0.001 25.5 7.9 69 8-78 16-87 (270)
207 cd03060 GST_N_Omega_like GST_N 66.5 13 0.00029 23.4 4.1 28 5-32 7-34 (71)
208 PRK15005 universal stress prot 66.3 42 0.00092 23.5 8.3 59 16-79 75-144 (144)
209 cd01019 ZnuA Zinc binding prot 66.1 39 0.00084 27.8 7.7 62 17-78 193-257 (286)
210 PRK14177 bifunctional 5,10-met 66.0 11 0.00023 31.9 4.4 66 10-81 143-233 (284)
211 COG1879 RbsB ABC-type sugar tr 65.9 43 0.00094 27.0 7.9 69 12-80 54-124 (322)
212 cd06341 PBP1_ABC_ligand_bindin 65.4 47 0.001 26.7 8.0 71 8-78 18-96 (341)
213 PTZ00286 6-phospho-1-fructokin 65.3 13 0.00027 33.5 4.9 55 28-82 155-215 (459)
214 cd06354 PBP1_BmpA_PnrA_like Pe 65.2 38 0.00083 26.5 7.3 68 8-78 19-87 (265)
215 PRK14071 6-phosphofructokinase 64.9 10 0.00023 32.7 4.2 47 35-82 93-141 (360)
216 cd06291 PBP1_Qymf_like Ligand 64.9 60 0.0013 24.7 8.4 67 7-78 15-81 (265)
217 COG4126 Hydantoin racemase [Am 64.9 12 0.00026 30.9 4.3 64 13-77 125-202 (230)
218 PRK06830 diphosphate--fructose 64.8 12 0.00026 33.4 4.7 54 28-82 151-211 (443)
219 TIGR02483 PFK_mixed phosphofru 63.8 16 0.00036 31.1 5.2 47 36-82 81-127 (324)
220 PLN02884 6-phosphofructokinase 63.7 13 0.00028 33.0 4.6 50 31-81 125-181 (411)
221 PRK14180 bifunctional 5,10-met 63.3 11 0.00024 31.7 4.0 66 10-81 142-232 (282)
222 PRK03708 ppnK inorganic polyph 63.2 14 0.0003 30.8 4.5 77 5-82 13-90 (277)
223 PRK09701 D-allose transporter 63.1 58 0.0013 26.2 8.1 71 8-78 41-113 (311)
224 cd01536 PBP1_ABC_sugar_binding 63.1 62 0.0013 24.3 9.1 69 8-78 16-86 (267)
225 cd07944 DRE_TIM_HOA_like 4-hyd 63.0 42 0.00091 27.5 7.3 61 4-64 105-166 (266)
226 cd06312 PBP1_ABC_sugar_binding 62.9 43 0.00094 25.8 7.1 69 8-78 17-88 (271)
227 cd00758 MoCF_BD MoCF_BD: molyb 62.7 30 0.00065 25.1 5.8 68 12-81 23-96 (133)
228 cd05014 SIS_Kpsf KpsF-like pro 62.3 50 0.0011 22.9 7.3 61 5-65 10-90 (128)
229 COG3414 SgaB Phosphotransferas 62.3 18 0.00039 25.6 4.4 48 7-67 16-63 (93)
230 TIGR02637 RhaS rhamnose ABC tr 62.2 65 0.0014 25.5 8.1 68 10-78 17-87 (302)
231 PRK10824 glutaredoxin-4; Provi 62.1 32 0.0007 25.1 5.8 62 7-95 30-92 (115)
232 cd06325 PBP1_ABC_uncharacteriz 62.0 66 0.0014 24.7 7.9 69 8-78 15-87 (281)
233 cd06324 PBP1_ABC_sugar_binding 61.8 63 0.0014 25.8 8.1 68 8-78 17-88 (305)
234 cd04740 DHOD_1B_like Dihydroor 61.5 70 0.0015 26.0 8.4 48 6-56 138-186 (296)
235 PRK14187 bifunctional 5,10-met 61.4 13 0.00029 31.5 4.2 66 9-80 143-233 (294)
236 PF14528 LAGLIDADG_3: LAGLIDAD 61.4 11 0.00024 24.4 3.0 26 3-28 27-52 (77)
237 TIGR01037 pyrD_sub1_fam dihydr 61.2 68 0.0015 26.2 8.3 50 5-57 140-190 (300)
238 PRK10936 TMAO reductase system 61.2 92 0.002 25.6 11.0 68 9-78 64-134 (343)
239 PF05036 SPOR: Sporulation rel 61.2 28 0.00061 21.7 4.9 54 1-55 9-75 (76)
240 cd01574 PBP1_LacI Ligand-bindi 60.8 71 0.0015 24.2 8.9 71 7-78 15-85 (264)
241 PRK10401 DNA-binding transcrip 60.7 89 0.0019 25.3 11.9 48 8-57 76-123 (346)
242 cd06286 PBP1_CcpB_like Ligand- 60.3 48 0.001 25.2 6.8 49 7-57 15-63 (260)
243 cd06306 PBP1_TorT-like TorT-li 60.3 70 0.0015 24.8 7.9 69 8-78 16-87 (268)
244 cd03048 GST_N_Ure2p_like GST_N 60.2 19 0.00042 23.2 4.0 25 8-32 10-34 (81)
245 TIGR02470 sucr_synth sucrose s 60.2 1.6E+02 0.0036 28.3 11.6 112 9-134 604-722 (784)
246 PRK14168 bifunctional 5,10-met 60.2 15 0.00033 31.2 4.3 50 26-81 190-239 (297)
247 COG3340 PepE Peptidase E [Amin 60.1 21 0.00046 29.4 5.0 50 3-58 44-93 (224)
248 PF00682 HMGL-like: HMGL-like 60.0 32 0.0007 26.9 5.9 61 7-67 107-168 (237)
249 TIGR02183 GRXA Glutaredoxin, G 59.9 31 0.00067 23.1 5.1 33 3-35 6-41 (86)
250 cd02977 ArsC_family Arsenate R 59.9 24 0.00053 24.3 4.7 40 5-44 7-47 (105)
251 PRK01372 ddl D-alanine--D-alan 59.6 17 0.00037 29.3 4.4 63 9-80 24-90 (304)
252 smart00854 PGA_cap Bacterial c 59.4 30 0.00065 27.4 5.7 47 6-55 158-211 (239)
253 cd04795 SIS SIS domain. SIS (S 59.4 44 0.00095 21.3 6.6 28 26-53 51-78 (87)
254 PLN02616 tetrahydrofolate dehy 59.0 15 0.00032 32.3 4.1 66 10-81 215-305 (364)
255 PRK10222 PTS system L-ascorbat 58.9 43 0.00093 22.9 5.7 44 11-63 5-48 (85)
256 cd03036 ArsC_like Arsenate Red 58.9 25 0.00054 24.9 4.7 38 7-44 9-47 (111)
257 PF13409 GST_N_2: Glutathione 58.8 24 0.00051 22.6 4.2 28 8-35 3-30 (70)
258 cd03056 GST_N_4 GST_N family, 58.7 23 0.00049 21.9 4.1 24 8-31 10-33 (73)
259 cd00578 L-fuc_L-ara-isomerases 58.4 1.3E+02 0.0027 26.3 11.2 71 9-81 24-97 (452)
260 cd03061 GST_N_CLIC GST_N famil 58.3 27 0.00058 24.5 4.7 37 5-41 20-56 (91)
261 PRK14182 bifunctional 5,10-met 57.7 17 0.00038 30.6 4.2 66 10-81 141-231 (282)
262 PF09587 PGA_cap: Bacterial ca 57.7 32 0.00069 27.4 5.6 46 10-55 170-222 (250)
263 cd01987 USP_OKCHK USP domain i 57.6 58 0.0013 22.2 6.6 19 48-66 84-102 (124)
264 PLN02251 pyrophosphate-depende 57.5 19 0.00041 33.3 4.7 49 33-81 174-228 (568)
265 PF02608 Bmp: Basic membrane p 57.4 19 0.0004 29.7 4.3 62 23-84 162-225 (306)
266 cd03051 GST_N_GTT2_like GST_N 57.0 27 0.00058 21.5 4.2 24 8-31 10-33 (74)
267 PRK05286 dihydroorotate dehydr 57.0 1E+02 0.0022 26.2 8.8 54 5-59 189-248 (344)
268 cd06278 PBP1_LacI_like_2 Ligan 56.9 83 0.0018 23.8 12.1 68 7-79 15-84 (266)
269 PRK10017 colanic acid biosynth 56.9 1.3E+02 0.0029 26.4 9.8 63 64-135 338-403 (426)
270 cd00293 USP_Like Usp: Universa 56.4 54 0.0012 21.5 8.3 42 20-65 68-109 (130)
271 cd06295 PBP1_CelR Ligand bindi 56.3 90 0.002 24.0 10.3 67 8-80 27-95 (275)
272 cd05017 SIS_PGI_PMI_1 The memb 55.8 69 0.0015 22.5 7.7 55 26-83 47-101 (119)
273 PF01380 SIS: SIS domain SIS d 55.7 64 0.0014 22.1 6.5 77 2-83 12-109 (131)
274 PRK14186 bifunctional 5,10-met 55.4 19 0.00042 30.6 4.2 50 26-81 183-232 (297)
275 PRK14172 bifunctional 5,10-met 55.3 20 0.00043 30.2 4.2 50 26-81 183-232 (278)
276 PRK00311 panB 3-methyl-2-oxobu 55.0 80 0.0017 26.3 7.7 65 12-79 121-203 (264)
277 smart00046 DAGKc Diacylglycero 54.7 76 0.0016 22.6 7.9 76 16-98 19-100 (124)
278 PRK14987 gluconate operon tran 54.6 1.1E+02 0.0024 24.5 10.8 67 8-78 80-148 (331)
279 PRK09526 lacI lac repressor; R 54.4 1.1E+02 0.0024 24.5 11.6 69 8-78 80-150 (342)
280 PLN02204 diacylglycerol kinase 54.3 48 0.001 31.0 6.8 65 2-70 171-238 (601)
281 PLN02516 methylenetetrahydrofo 54.1 20 0.00044 30.5 4.1 50 26-81 192-241 (299)
282 PRK03692 putative UDP-N-acetyl 54.0 75 0.0016 26.0 7.3 54 5-59 113-167 (243)
283 cd07937 DRE_TIM_PC_TC_5S Pyruv 53.9 58 0.0013 26.7 6.7 55 3-57 113-170 (275)
284 cd05008 SIS_GlmS_GlmD_1 SIS (S 53.8 71 0.0015 22.0 7.6 61 5-65 9-89 (126)
285 COG2901 Fis Factor for inversi 53.8 12 0.00025 27.1 2.2 21 115-135 75-95 (98)
286 cd03040 GST_N_mPGES2 GST_N fam 53.8 19 0.0004 23.0 3.1 23 7-29 10-32 (77)
287 PRK15456 universal stress prot 53.2 78 0.0017 22.3 7.6 54 21-79 81-142 (142)
288 TIGR00676 fadh2 5,10-methylene 52.9 75 0.0016 26.0 7.2 52 10-61 47-98 (272)
289 cd06268 PBP1_ABC_transporter_L 52.7 98 0.0021 23.3 7.8 59 20-78 37-96 (298)
290 PRK09545 znuA high-affinity zi 52.6 92 0.002 26.0 7.8 64 17-81 217-284 (311)
291 PRK15118 universal stress glob 52.5 80 0.0017 22.2 7.8 61 18-82 75-141 (144)
292 cd03032 ArsC_Spx Arsenate Redu 52.4 31 0.00067 24.4 4.3 40 6-45 9-49 (115)
293 PF00582 Usp: Universal stress 52.3 66 0.0014 21.2 6.2 58 19-79 75-140 (140)
294 PRK14170 bifunctional 5,10-met 52.3 25 0.00054 29.7 4.3 49 27-81 183-231 (284)
295 PLN02564 6-phosphofructokinase 52.0 29 0.00062 31.6 4.9 53 28-81 155-214 (484)
296 cd06602 GH31_MGAM_SI_GAA This 51.6 66 0.0014 27.2 6.8 50 7-56 23-86 (339)
297 COG4213 XylF ABC-type xylose t 51.6 45 0.00098 29.1 5.8 71 6-81 43-115 (341)
298 PRK14166 bifunctional 5,10-met 51.6 25 0.00054 29.7 4.2 50 26-81 182-231 (282)
299 PF01177 Asp_Glu_race: Asp/Glu 51.5 36 0.00077 25.8 4.8 79 1-80 4-97 (216)
300 PRK01231 ppnK inorganic polyph 51.2 22 0.00048 29.8 3.9 77 4-81 16-95 (295)
301 TIGR02855 spore_yabG sporulati 50.8 63 0.0014 27.6 6.4 54 4-61 111-164 (283)
302 cd03035 ArsC_Yffb Arsenate Red 50.7 47 0.001 23.4 5.0 37 8-44 10-47 (105)
303 PRK14169 bifunctional 5,10-met 50.2 27 0.00058 29.5 4.2 50 26-81 181-230 (282)
304 cd07025 Peptidase_S66 LD-Carbo 50.2 54 0.0012 27.0 6.0 55 8-62 14-75 (282)
305 PF13727 CoA_binding_3: CoA-bi 50.1 41 0.00089 24.1 4.7 44 11-55 131-174 (175)
306 PRK14173 bifunctional 5,10-met 50.0 28 0.0006 29.5 4.3 49 27-81 181-229 (287)
307 cd00860 ThrRS_anticodon ThrRS 49.8 68 0.0015 20.7 5.4 51 4-59 11-61 (91)
308 PF05582 Peptidase_U57: YabG p 49.8 49 0.0011 28.2 5.7 54 4-61 112-165 (287)
309 PRK07259 dihydroorotate dehydr 49.8 1.4E+02 0.0031 24.3 8.4 47 6-55 141-188 (301)
310 PLN03028 pyrophosphate--fructo 49.7 27 0.00059 32.6 4.5 48 34-81 158-211 (610)
311 PRK09432 metF 5,10-methylenete 49.7 74 0.0016 26.7 6.8 49 12-60 73-121 (296)
312 PHA03392 egt ecdysteroid UDP-g 49.7 1.7E+02 0.0038 26.2 9.5 122 6-136 313-443 (507)
313 PRK06555 pyrophosphate--fructo 49.7 27 0.00058 31.0 4.3 46 36-81 99-150 (403)
314 TIGR02200 GlrX_actino Glutared 49.6 61 0.0013 20.0 5.5 34 5-40 8-41 (77)
315 PF02798 GST_N: Glutathione S- 49.3 57 0.0012 21.1 4.9 36 9-44 11-46 (76)
316 cd06316 PBP1_ABC_sugar_binding 49.3 99 0.0021 24.3 7.2 70 8-78 16-87 (294)
317 COG2086 FixA Electron transfer 49.3 1.4E+02 0.003 24.9 8.2 69 11-79 69-145 (260)
318 cd03053 GST_N_Phi GST_N family 49.3 46 0.00099 20.9 4.4 25 8-32 11-35 (76)
319 PRK10310 PTS system galactitol 49.2 86 0.0019 21.6 6.4 40 9-57 19-58 (94)
320 PRK14188 bifunctional 5,10-met 49.2 56 0.0012 27.6 6.0 51 5-55 45-96 (296)
321 PRK14072 6-phosphofructokinase 49.1 25 0.00055 31.0 4.0 47 34-81 88-141 (416)
322 PF13477 Glyco_trans_4_2: Glyc 49.1 86 0.0019 21.6 7.7 70 5-76 8-103 (139)
323 PF10137 TIR-like: Predicted n 49.0 72 0.0016 23.6 5.9 54 2-55 5-58 (125)
324 cd06594 GH31_glucosidase_YihQ 48.9 80 0.0017 26.5 6.9 50 6-56 21-91 (317)
325 TIGR02477 PFKA_PPi diphosphate 48.8 29 0.00062 31.9 4.4 49 33-81 145-199 (539)
326 PRK00430 fis global DNA-bindin 48.7 15 0.00033 25.9 2.1 21 116-136 73-93 (95)
327 cd01017 AdcA Metal binding pro 48.7 54 0.0012 26.6 5.7 65 17-82 185-253 (282)
328 cd06303 PBP1_LuxPQ_Quorum_Sens 48.4 1.3E+02 0.0028 23.5 8.9 50 9-58 18-69 (280)
329 cd03047 GST_N_2 GST_N family, 48.2 39 0.00084 21.3 3.9 25 8-32 10-34 (73)
330 PRK14191 bifunctional 5,10-met 48.2 56 0.0012 27.6 5.8 51 5-55 44-95 (285)
331 PRK14189 bifunctional 5,10-met 48.2 63 0.0014 27.3 6.1 53 4-56 44-97 (285)
332 PF11495 Regulator_TrmB: Archa 47.9 72 0.0016 25.3 6.2 52 5-58 7-58 (233)
333 cd06353 PBP1_BmpA_Med_like Per 47.7 90 0.002 25.0 6.8 40 16-57 26-65 (258)
334 cd00765 Pyrophosphate_PFK Phos 47.6 32 0.0007 31.7 4.6 49 33-81 150-204 (550)
335 smart00642 Aamy Alpha-amylase 47.6 87 0.0019 23.8 6.4 21 34-54 68-88 (166)
336 PRK07085 diphosphate--fructose 47.5 29 0.00063 31.9 4.3 49 33-81 148-202 (555)
337 PRK14176 bifunctional 5,10-met 47.4 70 0.0015 27.1 6.3 52 4-55 50-102 (287)
338 cd03058 GST_N_Tau GST_N family 47.2 45 0.00098 21.0 4.1 23 8-30 10-32 (74)
339 COG0402 SsnA Cytosine deaminas 47.1 1.8E+02 0.004 24.9 9.2 98 3-106 193-304 (421)
340 smart00852 MoCF_biosynth Proba 46.9 83 0.0018 22.5 5.9 68 12-82 22-96 (135)
341 cd00537 MTHFR Methylenetetrahy 46.9 95 0.0021 25.1 6.9 54 8-61 45-98 (274)
342 PRK10415 tRNA-dihydrouridine s 46.8 1.7E+02 0.0036 24.6 8.5 102 5-111 116-232 (321)
343 PRK14190 bifunctional 5,10-met 46.8 36 0.00078 28.7 4.4 51 10-65 142-217 (284)
344 cd07948 DRE_TIM_HCS Saccharomy 46.7 82 0.0018 25.8 6.5 58 8-65 112-170 (262)
345 PRK14183 bifunctional 5,10-met 46.4 36 0.00079 28.7 4.4 34 27-65 183-216 (281)
346 PF04007 DUF354: Protein of un 46.3 35 0.00076 29.2 4.4 64 11-79 38-110 (335)
347 PRK14190 bifunctional 5,10-met 46.2 61 0.0013 27.4 5.7 51 5-55 45-96 (284)
348 COG1393 ArsC Arsenate reductas 46.2 56 0.0012 23.8 4.9 37 9-45 13-50 (117)
349 TIGR02990 ectoine_eutA ectoine 46.1 88 0.0019 25.4 6.5 69 8-76 132-210 (239)
350 cd07381 MPP_CapA CapA and rela 46.0 56 0.0012 25.7 5.3 47 6-55 160-213 (239)
351 PRK15395 methyl-galactoside AB 45.8 1.4E+02 0.003 24.4 7.8 70 8-78 41-112 (330)
352 PF06490 FleQ: Flagellar regul 45.8 1.1E+02 0.0023 21.7 6.7 84 4-97 6-94 (109)
353 cd06592 GH31_glucosidase_KIAA1 45.8 78 0.0017 26.2 6.3 52 5-57 27-91 (303)
354 cd04336 YeaK YeaK is an unchar 45.3 40 0.00086 24.7 4.1 44 11-54 2-45 (153)
355 TIGR00177 molyb_syn molybdenum 45.3 85 0.0018 23.0 5.9 56 12-69 31-90 (144)
356 PRK14184 bifunctional 5,10-met 45.1 41 0.00089 28.4 4.5 50 26-81 186-235 (286)
357 PRK14193 bifunctional 5,10-met 45.1 63 0.0014 27.3 5.7 51 5-55 45-96 (284)
358 cd06597 GH31_transferase_CtsY 45.1 1.1E+02 0.0025 25.9 7.3 48 6-54 22-103 (340)
359 TIGR00677 fadh2_euk methylenet 45.0 1.1E+02 0.0023 25.4 7.0 52 10-61 48-99 (281)
360 PRK14180 bifunctional 5,10-met 44.9 63 0.0014 27.3 5.6 51 5-55 44-95 (282)
361 cd01545 PBP1_SalR Ligand-bindi 44.9 1.4E+02 0.0029 22.7 10.9 71 7-79 15-87 (270)
362 PRK02277 orotate phosphoribosy 44.8 94 0.002 24.3 6.3 72 7-78 28-114 (200)
363 PRK14166 bifunctional 5,10-met 44.7 66 0.0014 27.2 5.7 51 5-55 43-94 (282)
364 PF00365 PFK: Phosphofructokin 44.6 17 0.00036 30.3 2.1 46 36-82 79-126 (282)
365 PRK03958 tRNA 2'-O-methylase; 44.5 1E+02 0.0022 24.5 6.4 48 5-58 39-86 (176)
366 PRK13523 NADPH dehydrogenase N 44.4 1.3E+02 0.0029 25.5 7.6 39 21-59 207-250 (337)
367 TIGR03314 Se_ssnA putative sel 44.3 1.2E+02 0.0026 26.3 7.5 108 6-120 202-327 (441)
368 cd06304 PBP1_BmpA_like Peripla 44.2 1.5E+02 0.0032 22.9 7.8 46 9-57 19-64 (260)
369 PRK14171 bifunctional 5,10-met 44.2 80 0.0017 26.8 6.1 51 5-55 45-96 (288)
370 PRK14467 ribosomal RNA large s 44.0 1E+02 0.0023 26.5 6.9 52 4-55 264-324 (348)
371 PRK05447 1-deoxy-D-xylulose 5- 43.9 1.2E+02 0.0026 26.8 7.4 36 9-44 13-48 (385)
372 PF05728 UPF0227: Uncharacteri 43.9 1.2E+02 0.0026 23.6 6.8 79 2-80 9-89 (187)
373 PLN02540 methylenetetrahydrofo 43.8 94 0.002 28.9 7.0 59 2-61 40-98 (565)
374 PRK14167 bifunctional 5,10-met 43.8 70 0.0015 27.2 5.8 51 5-55 44-95 (297)
375 PRK14177 bifunctional 5,10-met 43.8 70 0.0015 27.0 5.8 51 5-55 46-97 (284)
376 cd03042 GST_N_Zeta GST_N famil 43.8 54 0.0012 20.2 4.0 25 8-32 10-34 (73)
377 PRK03910 D-cysteine desulfhydr 43.7 37 0.00079 28.4 4.1 45 39-83 171-221 (331)
378 COG1744 Med Uncharacterized AB 43.6 81 0.0018 27.0 6.2 63 22-85 193-256 (345)
379 PRK14171 bifunctional 5,10-met 43.4 40 0.00088 28.5 4.3 50 26-81 184-233 (288)
380 TIGR01616 nitro_assoc nitrogen 43.1 59 0.0013 23.9 4.7 37 8-44 12-49 (126)
381 PRK10792 bifunctional 5,10-met 43.1 35 0.00075 28.9 3.8 49 27-81 185-233 (285)
382 TIGR02495 NrdG2 anaerobic ribo 42.9 1.3E+02 0.0028 22.5 6.6 41 9-49 141-183 (191)
383 PRK14186 bifunctional 5,10-met 42.9 79 0.0017 26.9 5.9 51 5-55 45-96 (297)
384 TIGR02196 GlrX_YruB Glutaredox 42.8 74 0.0016 19.1 5.6 49 5-55 8-56 (74)
385 cd03030 GRX_SH3BGR Glutaredoxi 42.8 86 0.0019 21.8 5.3 36 7-44 16-51 (92)
386 PLN02897 tetrahydrofolate dehy 42.4 39 0.00085 29.4 4.1 52 9-65 197-273 (345)
387 cd04738 DHOD_2_like Dihydrooro 42.3 2.1E+02 0.0044 24.0 8.7 54 4-58 179-238 (327)
388 PRK14169 bifunctional 5,10-met 42.1 81 0.0018 26.6 5.9 51 5-55 43-94 (282)
389 PRK14173 bifunctional 5,10-met 42.1 74 0.0016 26.9 5.6 51 5-55 42-93 (287)
390 PF01976 DUF116: Protein of un 42.0 94 0.002 23.8 5.8 64 11-82 76-140 (158)
391 cd06347 PBP1_ABC_ligand_bindin 41.9 1.3E+02 0.0029 23.7 6.9 70 8-77 21-96 (334)
392 PRK14453 chloramphenicol/florf 41.7 1E+02 0.0022 26.6 6.5 56 4-59 260-329 (347)
393 TIGR00737 nifR3_yhdG putative 41.7 2E+02 0.0044 23.8 8.6 103 5-111 114-230 (319)
394 cd02066 GRX_family Glutaredoxi 41.6 76 0.0016 18.8 5.8 22 5-26 8-29 (72)
395 PF03808 Glyco_tran_WecB: Glyc 41.4 1.4E+02 0.0029 22.7 6.6 52 6-59 57-111 (172)
396 PRK14174 bifunctional 5,10-met 41.4 81 0.0018 26.7 5.8 51 5-55 44-95 (295)
397 COG1635 THI4 Ribulose 1,5-bisp 41.3 44 0.00095 28.1 4.0 17 9-25 81-97 (262)
398 PF01522 Polysacc_deac_1: Poly 41.3 65 0.0014 21.9 4.5 47 8-58 18-64 (123)
399 PF13417 GST_N_3: Glutathione 41.1 78 0.0017 20.1 4.6 27 5-31 5-31 (75)
400 COG2984 ABC-type uncharacteriz 41.1 2.4E+02 0.0052 24.5 10.6 123 3-126 138-282 (322)
401 PF01910 DUF77: Domain of unkn 40.9 28 0.00061 24.3 2.5 43 3-45 12-56 (92)
402 PRK10792 bifunctional 5,10-met 40.8 84 0.0018 26.6 5.8 51 5-55 46-97 (285)
403 PRK14179 bifunctional 5,10-met 40.8 89 0.0019 26.4 5.9 51 5-55 45-96 (284)
404 PF13072 DUF3936: Protein of u 40.5 24 0.00052 21.4 1.8 15 124-138 15-29 (38)
405 PRK05437 isopentenyl pyrophosp 40.5 2.4E+02 0.0051 24.2 8.8 49 3-55 167-216 (352)
406 PF02670 DXP_reductoisom: 1-de 40.1 1E+02 0.0022 23.1 5.5 38 8-45 9-46 (129)
407 PF03698 UPF0180: Uncharacteri 39.9 49 0.0011 22.9 3.6 29 48-77 34-62 (80)
408 cd06299 PBP1_LacI_like_13 Liga 39.9 1.6E+02 0.0036 22.2 11.4 67 8-78 16-84 (265)
409 PRK12559 transcriptional regul 39.9 85 0.0018 23.1 5.1 37 8-44 11-48 (131)
410 PF01488 Shikimate_DH: Shikima 39.8 1.4E+02 0.003 21.6 6.2 34 9-45 23-56 (135)
411 PRK14045 1-aminocyclopropane-1 39.8 49 0.0011 27.7 4.2 43 40-82 173-221 (329)
412 TIGR01884 cas_HTH CRISPR locus 39.7 1.3E+02 0.0029 23.2 6.5 73 9-81 43-122 (203)
413 PRK13811 orotate phosphoribosy 39.6 1.7E+02 0.0036 22.3 6.8 67 11-77 3-84 (170)
414 PF13528 Glyco_trans_1_3: Glyc 39.3 1.3E+02 0.0028 24.0 6.5 62 12-82 206-280 (318)
415 PRK14175 bifunctional 5,10-met 39.3 90 0.002 26.3 5.7 51 5-55 45-96 (286)
416 cd00886 MogA_MoaB MogA_MoaB fa 39.2 1.2E+02 0.0027 22.4 6.0 59 13-72 25-88 (152)
417 PRK05382 chorismate synthase; 39.2 92 0.002 27.3 5.9 41 73-115 204-248 (359)
418 PRK14184 bifunctional 5,10-met 39.2 99 0.0022 26.1 6.0 51 5-55 44-95 (286)
419 KOG4417 Predicted endonuclease 39.2 22 0.00047 29.6 1.9 68 7-80 71-151 (261)
420 cd03037 GST_N_GRX2 GST_N famil 39.1 39 0.00085 21.1 2.8 24 7-30 9-32 (71)
421 PRK14172 bifunctional 5,10-met 39.1 88 0.0019 26.3 5.6 50 6-55 46-96 (278)
422 COG0011 Uncharacterized conser 39.0 38 0.00083 24.5 3.0 43 3-47 16-62 (100)
423 PRK10499 PTS system N,N'-diace 38.9 77 0.0017 22.5 4.6 72 9-89 19-91 (106)
424 PF06506 PrpR_N: Propionate ca 38.9 86 0.0019 23.7 5.2 58 15-82 94-151 (176)
425 PF00994 MoCF_biosynth: Probab 38.9 1E+02 0.0022 22.3 5.4 64 11-76 20-87 (144)
426 cd06601 GH31_lyase_GLase GLase 38.8 1.4E+02 0.0031 25.4 6.9 48 6-54 22-82 (332)
427 PF13607 Succ_CoA_lig: Succiny 38.8 82 0.0018 23.5 4.9 65 2-71 35-103 (138)
428 PRK12759 bifunctional gluaredo 38.8 66 0.0014 28.1 5.0 33 3-37 8-40 (410)
429 TIGR02883 spore_cwlD N-acetylm 38.7 1.2E+02 0.0025 23.3 6.0 52 7-58 29-92 (189)
430 cd07939 DRE_TIM_NifV Streptomy 38.5 1.1E+02 0.0024 24.6 6.0 60 8-67 110-170 (259)
431 cd06591 GH31_xylosidase_XylS X 38.5 1.4E+02 0.003 25.0 6.7 50 6-56 22-86 (319)
432 COG1103 Archaea-specific pyrid 38.5 35 0.00077 29.7 3.2 64 2-78 167-231 (382)
433 PRK14191 bifunctional 5,10-met 38.5 68 0.0015 27.1 4.9 34 27-65 183-216 (285)
434 cd03055 GST_N_Omega GST_N fami 38.4 69 0.0015 21.3 4.1 25 6-30 26-50 (89)
435 PLN02378 glutathione S-transfe 38.4 49 0.0011 25.5 3.8 32 7-38 20-51 (213)
436 cd01452 VWA_26S_proteasome_sub 38.3 2E+02 0.0043 22.7 7.7 40 6-45 121-161 (187)
437 PRK14181 bifunctional 5,10-met 38.3 90 0.0019 26.4 5.6 51 5-55 39-90 (287)
438 PF03618 Kinase-PPPase: Kinase 38.2 1.4E+02 0.0031 24.9 6.6 64 3-68 5-70 (255)
439 PRK00865 glutamate racemase; P 38.2 41 0.0009 27.3 3.5 45 33-78 47-97 (261)
440 TIGR01275 ACC_deam_rel pyridox 38.1 48 0.001 27.2 3.9 41 39-79 158-203 (311)
441 cd03033 ArsC_15kD Arsenate Red 38.0 82 0.0018 22.6 4.7 36 8-43 11-47 (113)
442 PRK14194 bifunctional 5,10-met 38.0 59 0.0013 27.7 4.5 49 27-81 185-233 (301)
443 PRK01905 DNA-binding protein F 37.9 30 0.00065 23.2 2.2 21 116-136 55-75 (77)
444 PRK14040 oxaloacetate decarbox 37.9 1.6E+02 0.0035 27.3 7.6 62 3-65 119-183 (593)
445 cd03522 MoeA_like MoeA_like. T 37.8 1.1E+02 0.0024 26.0 6.1 70 12-82 183-257 (312)
446 cd02976 NrdH NrdH-redoxin (Nrd 37.8 91 0.002 18.7 5.5 35 6-42 9-43 (73)
447 PRK11361 acetoacetate metaboli 37.8 25 0.00054 30.0 2.2 21 116-136 435-455 (457)
448 COG3077 RelB DNA-damage-induci 37.7 74 0.0016 22.6 4.2 37 6-46 12-67 (88)
449 cd00956 Transaldolase_FSA Tran 37.7 97 0.0021 24.6 5.5 42 7-53 141-182 (211)
450 cd06595 GH31_xylosidase_XylS-l 37.6 1.6E+02 0.0034 24.3 6.9 50 6-56 23-94 (292)
451 PF02016 Peptidase_S66: LD-car 37.6 39 0.00086 27.9 3.3 74 4-78 10-97 (284)
452 cd06271 PBP1_AglR_RafR_like Li 37.5 1.8E+02 0.0039 21.9 8.8 67 8-78 20-88 (268)
453 PRK14194 bifunctional 5,10-met 37.3 1.1E+02 0.0023 26.1 5.9 51 5-55 46-97 (301)
454 TIGR02478 6PF1K_euk 6-phosphof 37.2 48 0.001 31.6 4.1 47 36-82 465-518 (745)
455 PRK14168 bifunctional 5,10-met 37.1 1E+02 0.0022 26.3 5.7 51 5-55 46-97 (297)
456 PRK14187 bifunctional 5,10-met 37.0 1.2E+02 0.0025 25.9 6.1 51 5-55 45-96 (294)
457 TIGR00260 thrC threonine synth 37.0 45 0.00098 27.5 3.6 47 37-83 163-218 (328)
458 PLN02516 methylenetetrahydrofo 36.9 1.1E+02 0.0025 26.0 6.0 51 5-55 52-103 (299)
459 PRK14192 bifunctional 5,10-met 36.9 1.1E+02 0.0024 25.5 5.9 43 6-48 47-89 (283)
460 PRK11815 tRNA-dihydrouridine s 36.8 2.6E+02 0.0056 23.6 11.3 109 5-117 116-247 (333)
461 PRK02842 light-independent pro 36.8 1.5E+02 0.0032 25.8 6.9 15 10-24 180-194 (427)
462 PRK00768 nadE NAD synthetase; 36.8 1.8E+02 0.004 24.2 7.2 96 15-117 5-119 (268)
463 PRK14170 bifunctional 5,10-met 36.7 99 0.0021 26.1 5.6 51 5-55 44-95 (284)
464 PF01922 SRP19: SRP19 protein; 36.7 34 0.00074 24.1 2.4 21 6-26 27-47 (95)
465 PRK05339 PEP synthetase regula 36.7 1.6E+02 0.0035 24.7 6.8 63 3-67 11-75 (269)
466 cd06288 PBP1_sucrose_transcrip 36.7 1.9E+02 0.004 21.9 12.3 68 8-78 17-84 (269)
467 cd06353 PBP1_BmpA_Med_like Per 36.6 1.2E+02 0.0025 24.3 5.8 56 24-82 154-210 (258)
468 cd00858 GlyRS_anticodon GlyRS 36.5 1E+02 0.0022 21.8 5.0 48 6-59 40-87 (121)
469 PF07302 AroM: AroM protein; 36.4 2.4E+02 0.0052 23.1 7.9 64 13-76 141-206 (221)
470 cd03054 GST_N_Metaxin GST_N fa 36.4 54 0.0012 20.6 3.2 27 4-30 13-39 (72)
471 PF02350 Epimerase_2: UDP-N-ac 36.3 57 0.0012 27.6 4.1 74 3-79 18-98 (346)
472 PF02310 B12-binding: B12 bind 36.1 95 0.0021 21.2 4.7 35 13-52 20-54 (121)
473 cd06282 PBP1_GntR_like_2 Ligan 36.0 1.9E+02 0.0041 21.8 9.4 69 7-78 15-85 (266)
474 PRK12330 oxaloacetate decarbox 35.9 1.8E+02 0.0038 26.6 7.4 62 3-66 119-184 (499)
475 PRK07203 putative chlorohydrol 35.8 2.2E+02 0.0048 24.4 7.8 96 7-109 204-313 (442)
476 PRK09590 celB cellobiose phosp 35.8 97 0.0021 22.1 4.7 67 8-81 16-84 (104)
477 PRK11608 pspF phage shock prot 35.7 26 0.00057 29.3 2.0 21 116-136 304-324 (326)
478 TIGR02109 PQQ_syn_pqqE coenzym 35.7 1.5E+02 0.0033 24.7 6.5 46 7-52 131-176 (358)
479 PRK14183 bifunctional 5,10-met 35.7 1.1E+02 0.0023 25.9 5.6 51 5-55 44-95 (281)
480 cd03557 L-arabinose_isomerase 35.7 3.4E+02 0.0073 24.6 11.3 71 9-81 24-100 (484)
481 TIGR01304 IMP_DH_rel_2 IMP deh 35.6 1.4E+02 0.003 26.1 6.5 59 13-77 124-193 (369)
482 PRK03094 hypothetical protein; 35.6 65 0.0014 22.4 3.6 24 54-77 39-62 (80)
483 PRK15115 response regulator Gl 35.6 27 0.00059 29.7 2.1 21 116-136 416-436 (444)
484 PRK13758 anaerobic sulfatase-m 35.6 1.3E+02 0.0028 25.2 6.1 50 4-53 140-189 (370)
485 PRK14178 bifunctional 5,10-met 35.4 1.2E+02 0.0025 25.6 5.8 51 5-55 39-90 (279)
486 cd03038 GST_N_etherase_LigE GS 35.2 41 0.0009 21.9 2.5 27 5-31 14-40 (84)
487 TIGR00742 yjbN tRNA dihydrouri 35.1 2.8E+02 0.006 23.5 10.9 54 5-58 106-163 (318)
488 PRK14182 bifunctional 5,10-met 35.0 1.2E+02 0.0025 25.7 5.8 51 5-55 43-94 (282)
489 TIGR01617 arsC_related transcr 35.0 1.3E+02 0.0027 21.2 5.2 35 6-42 8-42 (117)
490 PRK14185 bifunctional 5,10-met 34.9 62 0.0013 27.5 4.1 51 25-81 185-235 (293)
491 cd06604 GH31_glucosidase_II_Ma 34.9 1.8E+02 0.004 24.3 7.0 49 6-55 22-83 (339)
492 PRK09389 (R)-citramalate synth 34.9 2.3E+02 0.0051 25.4 8.0 61 8-68 114-175 (488)
493 cd07304 Chorismate_synthase Ch 34.7 1.1E+02 0.0025 26.6 5.8 86 13-115 133-250 (344)
494 PRK14176 bifunctional 5,10-met 34.7 62 0.0013 27.4 4.0 35 26-65 189-223 (287)
495 cd01311 PDC_hydrolase 2-pyrone 34.7 1.4E+02 0.003 23.9 5.9 49 6-59 108-156 (263)
496 cd03409 Chelatase_Class_II Cla 34.6 1.4E+02 0.003 19.8 6.4 43 9-51 18-60 (101)
497 PRK10923 glnG nitrogen regulat 34.4 30 0.00065 29.8 2.2 21 116-136 447-467 (469)
498 cd04335 PrdX_deacylase This CD 34.4 82 0.0018 23.2 4.3 45 11-55 2-46 (156)
499 cd06332 PBP1_aromatic_compound 34.3 2.1E+02 0.0046 22.5 6.9 70 8-78 18-95 (333)
500 PRK13361 molybdenum cofactor b 34.2 2.1E+02 0.0045 23.9 7.1 49 5-53 137-187 (329)
No 1
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=100.00 E-value=4.2e-62 Score=375.18 Aligned_cols=138 Identities=46% Similarity=0.726 Sum_probs=135.9
Q ss_pred CCCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecC
Q 032570 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPL 80 (138)
Q Consensus 1 mGS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~ 80 (138)
|||+||+++++|+.++|++|||+||++|+|+||+|+++.+|++++++++++|||++||++||||||+|++|++||||||+
T Consensus 5 mGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~ 84 (156)
T TIGR01162 5 MGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPV 84 (156)
T ss_pred ECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchh-hhhhhcCCCCCeeeEEecCCchhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 032570 81 LSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 138 (138)
Q Consensus 81 ~~~~~~G~d-LlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~~~~~~l~~kl~~~~~~ 138 (138)
++++++|+| ||||+|||+|+||+||+|||++|||++|+|||+++|++||+||++||++
T Consensus 85 ~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~d~~l~~kl~~~r~~ 143 (156)
T TIGR01162 85 PSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYREN 143 (156)
T ss_pred CccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 988899999 9999999999999999999999999999999999999999999999974
No 2
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.6e-62 Score=374.39 Aligned_cols=138 Identities=41% Similarity=0.668 Sum_probs=136.5
Q ss_pred CCCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecC
Q 032570 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPL 80 (138)
Q Consensus 1 mGS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~ 80 (138)
|||+|||++|+++.++|++|||+||++|.||||||+++.+|+++++++|++|||++||+++|||||+|++|++||||||+
T Consensus 9 MGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVPv 88 (162)
T COG0041 9 MGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVPV 88 (162)
T ss_pred ecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEeccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchh-hhhhhcCCCCCeeeEEecCCchhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 032570 81 LSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 138 (138)
Q Consensus 81 ~~~~~~G~d-LlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~~~~~~l~~kl~~~~~~ 138 (138)
++..|+|+| |+|++|||+|+||+||.||+++|||++|+|||++.|+++++||++||++
T Consensus 89 ~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~d~~l~~kl~~~r~~ 147 (162)
T COG0041 89 QSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIKDPELAEKLAEFREA 147 (162)
T ss_pred ccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999973
No 3
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=100.00 E-value=8.8e-59 Score=354.94 Aligned_cols=138 Identities=38% Similarity=0.618 Sum_probs=123.1
Q ss_pred CCCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecC
Q 032570 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPL 80 (138)
Q Consensus 1 mGS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~ 80 (138)
|||+||+++++|+.++|++||++||++|+|+||+|+++.+|++++++++++|||++||++|||||++|++|++||||||+
T Consensus 7 ~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~ 86 (150)
T PF00731_consen 7 MGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLPVIGVPV 86 (150)
T ss_dssp ESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-EEEEEE
T ss_pred eCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCCEEEeec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchh-hhhhhcCCCCCeeeEEecCCchhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 032570 81 LSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 138 (138)
Q Consensus 81 ~~~~~~G~d-LlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~~~~~~l~~kl~~~~~~ 138 (138)
+++++.|+| |||++|||+|+||+||+|||++|||++|+|||+++|+++|+||++||++
T Consensus 87 ~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~ 145 (150)
T PF00731_consen 87 SSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREK 145 (150)
T ss_dssp -STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999974
No 4
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=2e-52 Score=372.63 Aligned_cols=138 Identities=44% Similarity=0.722 Sum_probs=136.0
Q ss_pred CCCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecC
Q 032570 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPL 80 (138)
Q Consensus 1 mGS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~ 80 (138)
|||+||+++|+|+.++|++|||+|+++|+||||+|+++.+|++++++++++|||++|||++|||||+|++|++||||||+
T Consensus 417 ~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~ 496 (577)
T PLN02948 417 MGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPV 496 (577)
T ss_pred ECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchh-hhhhhcCCCCCeeeEEecCCchhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 032570 81 LSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 138 (138)
Q Consensus 81 ~~~~~~G~d-LlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~~~~~~l~~kl~~~~~~ 138 (138)
+++.++|+| ||||+|||+|+||+||+|||++|||++|+|||+++|++||+||++||++
T Consensus 497 ~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~~~~~~~~~~~~~~~ 555 (577)
T PLN02948 497 KTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDPDLLDKMEAYQED 555 (577)
T ss_pred CCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 988999999 9999999999999999999999999999999999999999999999974
No 5
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.97 E-value=1.2e-31 Score=217.12 Aligned_cols=118 Identities=26% Similarity=0.311 Sum_probs=105.8
Q ss_pred CCcCCHHHHHHHHHHHHHhCCC----eEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEE
Q 032570 2 ESDLDLPVMNDAARTLSDFGVP----YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIR 77 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~----~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIg 77 (138)
.+|||+|++|||+.+++.+|++ ||++|++.||....+.+... ++++++|++|||+++||+++||+++.|||+
T Consensus 125 AGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~----~~~~~lIVvAGMEGaLPsvvagLvD~PVIa 200 (254)
T COG1691 125 AGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKI----EDADVLIVVAGMEGALPSVVAGLVDVPVIA 200 (254)
T ss_pred cCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHh----hCCCeEEEEcccccchHHHHHhccCCCeEe
Confidence 3799999999999999999997 89999999999997766543 679999999999999999999999999999
Q ss_pred ecCCCCC---CCchh-hhhhhcCCCCCeeeEEecCCchhHHHHHHHHHccC
Q 032570 78 VPLLSED---WSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIA 124 (138)
Q Consensus 78 vP~~~~~---~~G~d-LlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~~~ 124 (138)
||++.++ ++|+. ||+|||.++ .++++|||||+++||.+|+||+...
T Consensus 201 vPTsVGYG~g~gGiaaLltMLqSCs-pGv~VVNIdNGfGAa~~A~~I~r~~ 250 (254)
T COG1691 201 VPTSVGYGAGGGGIAALLTMLQSCS-PGVGVVNIDNGFGAAVLAVQILRRI 250 (254)
T ss_pred cccccccCcCCccHHHHHHHHHhcC-CCeEEEEccCchHHHHHHHHHHHHH
Confidence 9999764 67899 999999652 1288899999999999999999764
No 6
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.89 E-value=1.9e-24 Score=184.56 Aligned_cols=135 Identities=30% Similarity=0.345 Sum_probs=131.6
Q ss_pred CCCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecC
Q 032570 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPL 80 (138)
Q Consensus 1 mGS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~ 80 (138)
|++++|.++|..++..++.+++++|.-+.++||+|.....|...+.+++.+++|+.||.++|+|+++++.+..| ++|+
T Consensus 215 ~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~~~--gvp~ 292 (373)
T KOG2835|consen 215 MWPDGDGRIMKDKKVYFDLDEVTNEGLILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFERP--GVPV 292 (373)
T ss_pred EcccCCcceeeeeeEEeccccCCccceEEEeecCchhHhhhhhhcccCceEEEEeccCCCCCChhhHHhhcccc--Ccce
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCchh-hhhhhcCCCCCeeeEEecCCchhHHHHHHHHHccCCHHHHHHHHHHHh
Q 032570 81 LSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVE 137 (138)
Q Consensus 81 ~~~~~~G~d-LlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~~~~~~l~~kl~~~~~ 137 (138)
....++|.| +||+||||.|+||+|++|++++|||++|+|||++.|+.+|.|++.|+.
T Consensus 293 ~~~~~dg~~~~l~~V~~~~~~~~~~v~v~~p~~aa~~aar~l~~~~~~i~gk~~~~~l 350 (373)
T KOG2835|consen 293 VFVAVDGRDNLLSIVQMPNGVPVATVAVNNPENAALLAARILGLSNEMITGKMRSYQL 350 (373)
T ss_pred eeeecccccccccceeccCCccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 998999999 999999999999999999999999999999999999999999999864
No 7
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=96.87 E-value=0.0052 Score=51.83 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcC-CchhHHhhhccCCcEEEecCCC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~-a~L~gvva~~t~~PVIgvP~~~ 82 (138)
...+++.+.|++-|+.+++.+.+-+-+.+.+.+.++.+++.++++||++-|++ --.+..+|....+|+|.||+..
T Consensus 36 ~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~p~i~VPTta 111 (349)
T cd08550 36 KSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDKPIVIVPTIA 111 (349)
T ss_pred HHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 45678888888888877766666677888899999888888899999998875 4577788888899999999964
No 8
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=96.84 E-value=0.0077 Score=50.67 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC-chhHHhhhccCCcEEEecCCC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a-~L~gvva~~t~~PVIgvP~~~ 82 (138)
...++..+.|++.|+.+.+.....+-+.+.+.+.++.+++.++++||++-|++. -.+-.+|....+|+|.||+..
T Consensus 36 ~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~P~iaIPTTa 111 (351)
T cd08170 36 LVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGAPVVIVPTIA 111 (351)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCCCEEEeCCcc
Confidence 577888899999999876556667888889999999898889999999999965 456677777889999999974
No 9
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=96.61 E-value=0.011 Score=49.97 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCc-CCchhHHhhhccCCcEEEecCCC
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~-~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
..++..+.|++.| .+.+. ...|.+.+.+.++.+.+.+.++++||++-|+ ..-+++++|-....|+|.||+..
T Consensus 49 ~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 49 AGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred HHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCCc
Confidence 4566777888888 76654 4579999999999998888789999999887 45589999988899999999974
No 10
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=96.50 E-value=0.016 Score=49.27 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcC-CchhHHhhhccCCcEEEecCCC
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~-a~L~gvva~~t~~PVIgvP~~~ 82 (138)
..++..+.|++-|+.+.+-....+-+-+.+.++++.+++.++++||++-|++ --++..+|....+|+|.||+..
T Consensus 44 ~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 44 VGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 5677788888888887544456777888888888888888899999999885 4577888888899999999964
No 11
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=96.41 E-value=0.012 Score=49.45 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEccC---CCchHHHHHHHHhhhcCCeEEEEecCcC-CchhHHhhhccCCcEEEecCCC
Q 032570 10 MNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~SaH---R~p~~~~~~~~~~~~~~~~viIa~AG~~-a~L~gvva~~t~~PVIgvP~~~ 82 (138)
.+++.+.|++.|+++++...... .+.+.+.+.++.+++ ++++||++-|++ --.+..+|....+|+|.||+..
T Consensus 39 ~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~~~~p~i~IPTTa 114 (348)
T cd08175 39 GKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYKTGIPYISVPTAP 114 (348)
T ss_pred HHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHhcCCCEEEecCcc
Confidence 57788899999998765443333 788888888887766 799999999985 4577888888899999999974
No 12
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=96.25 E-value=0.023 Score=47.76 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHhhhcCC---eEEEEecCcCC-chhHHhhh--ccCCcEEEec
Q 032570 9 VMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGVEA-HLSGVAAA--NSQILVIRVP 79 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~Sa---HR~p~~~~~~~~~~~~~~~---~viIa~AG~~a-~L~gvva~--~t~~PVIgvP 79 (138)
+.+++.+.|++.|+++.+.+... +.+.+.+.+.++.+.+.++ +++|++-|++. -+++++|. ....|+|.||
T Consensus 35 ~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~~~~p~i~VP 114 (344)
T TIGR01357 35 YADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATYMRGIRFIQVP 114 (344)
T ss_pred HHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHHccCCCEEEec
Confidence 67888889999999887555542 5566788888887766554 89999988854 47788873 4578999999
Q ss_pred CC
Q 032570 80 LL 81 (138)
Q Consensus 80 ~~ 81 (138)
+.
T Consensus 115 TT 116 (344)
T TIGR01357 115 TT 116 (344)
T ss_pred Cc
Confidence 95
No 13
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=96.23 E-value=0.02 Score=48.27 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHhhhcCCeEEEEecCcC-CchhHHhhhccCCcEEEecCCC
Q 032570 8 PVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~-~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~-a~L~gvva~~t~~PVIgvP~~~ 82 (138)
...+++.+.|++-|+.+.+ .....+-+-+.+.+..+.++..++++||++-|++ --++..+|....+|+|.||+..
T Consensus 36 ~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt~ 112 (345)
T cd08171 36 AAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTIA 112 (345)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCcc
Confidence 3467778888888887653 3345677778888888888888999999998875 4567788877789999999964
No 14
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=96.19 E-value=0.026 Score=46.86 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcC-CchhHHhhhcc--CCcEEEecCCC
Q 032570 8 PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANS--QILVIRVPLLS 82 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~-a~L~gvva~~t--~~PVIgvP~~~ 82 (138)
...++..+.|++. +.+.+. ....+.+.+.+.+.++.+++.++++||++-|++ --++..+|... .+|+|.||+..
T Consensus 37 ~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~~~~p~i~iPTt~ 114 (332)
T cd07766 37 GVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLNRGLPIIIVPTTA 114 (332)
T ss_pred hHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 6777888888876 665543 244678888999999888888899999998874 56777888776 89999999974
No 15
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=96.16 E-value=0.034 Score=46.89 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHhhhcCC---eEEEEecCc-CCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~Sa---HR~p~~~~~~~~~~~~~~~---~viIa~AG~-~a~L~gvva~--~t~~PVIgv 78 (138)
.+.++..+.|+..|+++++-+... +++.+.+.+..+.+.+.++ ++||++-|+ ..-+++++|+ ....|+|.|
T Consensus 38 ~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~rgip~i~V 117 (345)
T cd08195 38 LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATYMRGIDFIQI 117 (345)
T ss_pred HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHHhcCCCeEEc
Confidence 577888999999898887666553 7888999999888877666 899999887 5668888884 668999999
Q ss_pred cCC
Q 032570 79 PLL 81 (138)
Q Consensus 79 P~~ 81 (138)
|+.
T Consensus 118 PTT 120 (345)
T cd08195 118 PTT 120 (345)
T ss_pred chh
Confidence 996
No 16
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=96.13 E-value=0.023 Score=48.07 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC-chhHHhhhcc--------------
Q 032570 8 PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANS-------------- 71 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a-~L~gvva~~t-------------- 71 (138)
...++..+.|++-|+.+.+. -...|-+.+.+.+.++.++..++++||++-|++. -++-.+|...
T Consensus 38 ~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~ 117 (370)
T cd08551 38 GVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKP 117 (370)
T ss_pred ccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCccc
Confidence 56678888888888876532 2447889999999999998889999999998754 4555666544
Q ss_pred ----CCcEEEecCCC
Q 032570 72 ----QILVIRVPLLS 82 (138)
Q Consensus 72 ----~~PVIgvP~~~ 82 (138)
.+|+|.||+..
T Consensus 118 ~~~~~~p~i~VPTt~ 132 (370)
T cd08551 118 VIKPALPLIAIPTTA 132 (370)
T ss_pred ccCCCCCEEEecCCC
Confidence 78999999975
No 17
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=95.98 E-value=0.049 Score=45.73 Aligned_cols=73 Identities=23% Similarity=0.211 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCc-CCchhHHhhhccCCcEEEecCCC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~-~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
...++..+.|++.| .+.+.+ ..+=+.+.+.+..+.+++.++++||++-|+ ..-++..+|....+|+|.||+..
T Consensus 39 ~~~~~v~~~l~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~p~i~iPTT~ 112 (339)
T cd08173 39 IAGKKVEALLEDEG-EVDVVI-VEDATYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGIPFISVPTAA 112 (339)
T ss_pred HHHHHHHHHHHhcC-CeEEEE-eCCCCHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCCCEEEecCcc
Confidence 56778888999888 776654 356677888888888888889999998887 45688888888889999999974
No 18
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=95.79 E-value=0.039 Score=47.01 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhh---------------
Q 032570 7 LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA--------------- 69 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~--------------- 69 (138)
....+++.+.|++.|+.+.+- -...|-+.+.+.+.++.++..++++||++-|++.. .+-++|.
T Consensus 37 ~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~ 116 (375)
T cd08194 37 LGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPR 116 (375)
T ss_pred cchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcc
Confidence 347788999999999976542 34578888889999999988899999999998654 2334442
Q ss_pred ---ccCCcEEEecCCC
Q 032570 70 ---NSQILVIRVPLLS 82 (138)
Q Consensus 70 ---~t~~PVIgvP~~~ 82 (138)
...+|+|.||+..
T Consensus 117 ~~~~~~~P~i~IPTta 132 (375)
T cd08194 117 IVDKPGLPLIAIPTTA 132 (375)
T ss_pred cccCCCCCEEEECCCC
Confidence 2468999999974
No 19
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=95.75 E-value=0.031 Score=48.31 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh----HHhhhc-----------
Q 032570 7 LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS----GVAAAN----------- 70 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~----gvva~~----------- 70 (138)
....+++.+.|++-|+.+.+. -...+-+.+.+.+.++.+++.++++||++-|+|.-=. +++..+
T Consensus 63 ~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~ 142 (395)
T PRK15454 63 AGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSET 142 (395)
T ss_pred CccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcc
Confidence 456788999999999976543 2345666688999999898899999999999975322 122111
Q ss_pred ----cCCcEEEecCCC
Q 032570 71 ----SQILVIRVPLLS 82 (138)
Q Consensus 71 ----t~~PVIgvP~~~ 82 (138)
..+|+|.||+..
T Consensus 143 ~~~~~~~P~iaIPTta 158 (395)
T PRK15454 143 SVLQPRLPLIAIPTTA 158 (395)
T ss_pred cccCCCCCEEEECCCC
Confidence 357999999975
No 20
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=95.74 E-value=0.057 Score=46.03 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhhc-----------------
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN----------------- 70 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~~----------------- 70 (138)
..+++.+.|++.|+.+++.-....-+.+.+.+.++.+++.++++||++-|++.. .+-.+|..
T Consensus 35 ~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~ 114 (374)
T cd08183 35 RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRG 114 (374)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCcc
Confidence 678888899999998765423345566778888888888899999999999653 33344332
Q ss_pred -----cCCcEEEecCCC
Q 032570 71 -----SQILVIRVPLLS 82 (138)
Q Consensus 71 -----t~~PVIgvP~~~ 82 (138)
..+|+|.||+..
T Consensus 115 ~~~~~~~~p~i~VPTta 131 (374)
T cd08183 115 LPLDGPPLPFIAIPTTA 131 (374)
T ss_pred ccCCCCCCCEEEecCCC
Confidence 368999999974
No 21
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=95.69 E-value=0.031 Score=47.59 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhhc-------------
Q 032570 6 DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN------------- 70 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~~------------- 70 (138)
+....++..+.|++-|+.+.+. -.-.|.+.+.+.+.++.+++.++++||++-|++.. .+..+|..
T Consensus 39 ~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~ 118 (376)
T cd08193 39 KAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGV 118 (376)
T ss_pred hCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCC
Confidence 4456788888999989876531 23378888999999999988899999999999764 34455543
Q ss_pred -----cCCcEEEecCCC
Q 032570 71 -----SQILVIRVPLLS 82 (138)
Q Consensus 71 -----t~~PVIgvP~~~ 82 (138)
..+|+|.||+..
T Consensus 119 ~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 119 DLVAGPRLPLILVPTTA 135 (376)
T ss_pred CccCCCCCCEEEeCCCC
Confidence 368999999975
No 22
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=95.62 E-value=0.041 Score=46.71 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhhc--------------
Q 032570 7 LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN-------------- 70 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~~-------------- 70 (138)
....+++.+.|++-|+++.+- -...|-+.+.+.+.++.++..++++||++-|++.. ++-.+|..
T Consensus 38 ~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~ 117 (370)
T cd08192 38 LGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIE 117 (370)
T ss_pred CccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhccc
Confidence 346788999999989876532 23478888889999998988899999999997643 33344432
Q ss_pred --------cCCcEEEecCCC
Q 032570 71 --------SQILVIRVPLLS 82 (138)
Q Consensus 71 --------t~~PVIgvP~~~ 82 (138)
..+|+|.||+..
T Consensus 118 ~~~~~~~~~~~p~i~VPTta 137 (370)
T cd08192 118 GGWPRITDAIPPLIAIPTTA 137 (370)
T ss_pred ccccccCCCCCCEEEecCCC
Confidence 248999999975
No 23
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=95.62 E-value=0.065 Score=45.88 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHhhhcCCe---EEEEecCc-CCchhHHhhhc--cCCcEEEec
Q 032570 9 VMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIK---IIIVGDGV-EAHLSGVAAAN--SQILVIRVP 79 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~S---aHR~p~~~~~~~~~~~~~~~~---viIa~AG~-~a~L~gvva~~--t~~PVIgvP 79 (138)
..++..+.|++.|+++++.+.+ .+++.+.+.+..+.+.+.+++ +||++-|+ ..-+++++|+. ...|+|.||
T Consensus 38 ~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~~rgip~I~IP 117 (355)
T cd08197 38 YGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALLFRGIRLVHIP 117 (355)
T ss_pred HHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhccCCCEEEec
Confidence 5678888999999988766654 467778888888888777887 99988887 56688888854 578999999
Q ss_pred CC
Q 032570 80 LL 81 (138)
Q Consensus 80 ~~ 81 (138)
+.
T Consensus 118 TT 119 (355)
T cd08197 118 TT 119 (355)
T ss_pred Cc
Confidence 95
No 24
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=95.61 E-value=0.059 Score=45.34 Aligned_cols=73 Identities=10% Similarity=-0.037 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc--cCCCchHHHHHHHHhhhcCCeEEEEecCc-CCchhHHhhhccCCcEEEecCCC
Q 032570 9 VMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~S--aHR~p~~~~~~~~~~~~~~~~viIa~AG~-~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
..+++.+.|++-|+.+++.... .+.+.+.+.+..+.+.. ++++||++-|+ ..-+++++|.....|+|.||+..
T Consensus 39 ~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA~~~gip~I~VPTT~ 114 (332)
T cd08549 39 AGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVSFKVGKPFISVPTAP 114 (332)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 3577888898888876653222 33456778888877766 89999999887 56688899988899999999974
No 25
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=95.56 E-value=0.12 Score=39.63 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=62.8
Q ss_pred HHHhC--CCeEEEEEccCCCchHHHHHHHHh-hhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCCCCCCchhhhhh
Q 032570 17 LSDFG--VPYEIKILPPHQNCKEALSYALSA-KERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINS 93 (138)
Q Consensus 17 L~~~g--i~~~~~V~SaHR~p~~~~~~~~~~-~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~~~~~G~dLlS~ 93 (138)
.++|. +..++... +.++..+.+++. ..++++|||+--| -+-.+-.++..|||-+|++ +.|++..
T Consensus 3 ~~e~~~~~~i~v~~~----~~e~~v~~a~~~~~~~g~dViIsRG~----ta~~lr~~~~iPVV~I~~s-----~~Dil~a 69 (176)
T PF06506_consen 3 AKEYEDEAEIDVIEA----SLEEAVEEARQLLESEGADVIISRGG----TAELLRKHVSIPVVEIPIS-----GFDILRA 69 (176)
T ss_dssp HCCCTTTSEEEEEE------HHHHHHHHHHHHTTTT-SEEEEEHH----HHHHHHCC-SS-EEEE--------HHHHHHH
T ss_pred hhhhCCCceEEEEEe----cHHHHHHHHHHhhHhcCCeEEEECCH----HHHHHHHhCCCCEEEECCC-----HhHHHHH
Confidence 45566 33444444 448888888888 7899999999544 4556677889999999986 4564444
Q ss_pred hcC-CC-CCeeeEEecCCchhHHHHHHHHHccC--------CHHHHHHHHHHH
Q 032570 94 IRM-PS-HVQVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYV 136 (138)
Q Consensus 94 lqm-P~-GvpvatV~I~~~~nAA~~AaqIl~~~--------~~~l~~kl~~~~ 136 (138)
++. .. +-.++.|+-.+...-.-...++|++. ..++...+++.+
T Consensus 70 l~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~ 122 (176)
T PF06506_consen 70 LAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAK 122 (176)
T ss_dssp HHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHH
Confidence 443 22 33488888777766566667777752 335666555544
No 26
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=95.51 E-value=0.092 Score=44.56 Aligned_cols=74 Identities=23% Similarity=0.271 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHhhhcCC---eEEEEecCc-CCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~S---aHR~p~~~~~~~~~~~~~~~---~viIa~AG~-~a~L~gvva~--~t~~PVIgv 78 (138)
...+++.+.|+..|+.+.+.+.+ .+.+.+.+.+.++.+.+.++ +++|++-|+ ..-+++++|+ ....|+|.|
T Consensus 45 ~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~~gip~i~I 124 (358)
T PRK00002 45 LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATYMRGIRFIQV 124 (358)
T ss_pred HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCEEEc
Confidence 47788888999999988765433 36677888888887766555 999999887 4567888874 567899999
Q ss_pred cCC
Q 032570 79 PLL 81 (138)
Q Consensus 79 P~~ 81 (138)
|+.
T Consensus 125 PTT 127 (358)
T PRK00002 125 PTT 127 (358)
T ss_pred Cch
Confidence 996
No 27
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=95.50 E-value=0.086 Score=44.67 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC-chhHHhhhc----------------
Q 032570 9 VMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAAN---------------- 70 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~-~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a-~L~gvva~~---------------- 70 (138)
..++..+.|++.|+.+.+ .-...|.+.+.+.+.++.+++.++++||++-|++. -++.++|..
T Consensus 36 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~ 115 (367)
T cd08182 36 IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNK 115 (367)
T ss_pred HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhcc
Confidence 557788889998876543 22446888889999999888889999999999754 344455442
Q ss_pred ------cCCcEEEecCCC
Q 032570 71 ------SQILVIRVPLLS 82 (138)
Q Consensus 71 ------t~~PVIgvP~~~ 82 (138)
...|+|.||+..
T Consensus 116 ~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 116 ERENRERALPLIAIPTTA 133 (367)
T ss_pred CCCCCCCCCCEEEeCCCC
Confidence 357999999975
No 28
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=95.44 E-value=0.086 Score=45.08 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHhhhcCC----eEEEEecCc-CCchhHHhh--hccCCcEEEe
Q 032570 9 VMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI----KIIIVGDGV-EAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~S---aHR~p~~~~~~~~~~~~~~~----~viIa~AG~-~a~L~gvva--~~t~~PVIgv 78 (138)
+.++..+.|+..|++++.-+.. .+++.+.+.+..+.+.+.++ ++||++-|+ ..-+++++| .....|.|.|
T Consensus 41 ~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~rg~p~i~V 120 (354)
T cd08199 41 YGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLYRRGTPYVRI 120 (354)
T ss_pred HHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 4567888888889987765554 58888999998888877666 999988885 778999998 4678999999
Q ss_pred cCC
Q 032570 79 PLL 81 (138)
Q Consensus 79 P~~ 81 (138)
|+.
T Consensus 121 PTT 123 (354)
T cd08199 121 PTT 123 (354)
T ss_pred cCc
Confidence 995
No 29
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=95.44 E-value=0.084 Score=45.01 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhH-Hhhhc-------------
Q 032570 6 DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAAN------------- 70 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~-~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~g-vva~~------------- 70 (138)
.....+++.+.|++.|+++.+ .-...+-+.+.+.+.++.+++.++++||++-|+|..=.+ .++..
T Consensus 39 ~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~ 118 (380)
T cd08185 39 KTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFG 118 (380)
T ss_pred hccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcc
Confidence 346778999999999998754 233467888889999888888899999999998753222 22221
Q ss_pred ----------cCCcEEEecCCC
Q 032570 71 ----------SQILVIRVPLLS 82 (138)
Q Consensus 71 ----------t~~PVIgvP~~~ 82 (138)
..+|+|.||+..
T Consensus 119 ~~~~~~~~~~~~~p~i~IPTta 140 (380)
T cd08185 119 GTGKGKPPPEKALPIIAITTTA 140 (380)
T ss_pred cccccccCCCCCCCEEEEcCCC
Confidence 358999999964
No 30
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.42 E-value=0.25 Score=44.83 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH-HHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCCCCCCc
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE 87 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~-~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~~~~~G 87 (138)
..+.+.++..+|+-..++++ .....++..+++ +..+.++++|||+-.|. +..+-.++++|||-++++ |
T Consensus 25 l~~~~~~i~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~dviIsrG~t----a~~i~~~~~iPVv~i~~s-----~ 93 (538)
T PRK15424 25 LFELFRDISLEFDHLANITP--IQLGFEKAVTYIRKRLATERCDAIIAAGSN----GAYLKSRLSVPVILIKPS-----G 93 (538)
T ss_pred HHHHHHHHHHhcCCCceEEe--hhhhHHHHHHHHHHHHhhCCCcEEEECchH----HHHHHhhCCCCEEEecCC-----H
Confidence 34566777778887666554 456778888888 55667789999995554 445666789999998876 4
Q ss_pred hhhhhhhcCCCC--CeeeEEecCCchhHHHHHHHHHcc--------CCHHHHHHHHHHHh
Q 032570 88 DDVINSIRMPSH--VQVASVPRNNAKNAALYAVKVLGI--------ADEDLLERIRKYVE 137 (138)
Q Consensus 88 ~dLlS~lqmP~G--vpvatV~I~~~~nAA~~AaqIl~~--------~~~~l~~kl~~~~~ 137 (138)
.|++..+.-... -.+++|+-.+-...+..-.++|++ +.++++..+++.|+
T Consensus 94 ~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~ 153 (538)
T PRK15424 94 FDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKA 153 (538)
T ss_pred hHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 564444433222 248889888888888888888876 33477788877765
No 31
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=95.41 E-value=0.065 Score=45.87 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhhc----------------
Q 032570 9 VMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN---------------- 70 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V-~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~~---------------- 70 (138)
..+++.+.|++.|+.+.+-- ...+.+.+.+.+.++.+++.++++||++-|++.. .+..+|..
T Consensus 43 ~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~ 122 (383)
T cd08186 43 AWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKF 122 (383)
T ss_pred hHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCc
Confidence 45788899999999765421 3367788999999999988899999999997643 33344331
Q ss_pred ---cCCcEEEecCCC
Q 032570 71 ---SQILVIRVPLLS 82 (138)
Q Consensus 71 ---t~~PVIgvP~~~ 82 (138)
..+|+|.||+..
T Consensus 123 ~~~~~~P~iaIPTTa 137 (383)
T cd08186 123 TPEKALPLIAINLTH 137 (383)
T ss_pred ccCCCCCEEEEeCCC
Confidence 257999999964
No 32
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=95.34 E-value=0.055 Score=46.13 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhhcc--------------
Q 032570 8 PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANS-------------- 71 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~~t-------------- 71 (138)
...++..+.|++.|+.+.+. -.-.|-+.+.+.+.++.+++.++++||++-|++.. .+-.+|...
T Consensus 41 g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~ 120 (374)
T cd08189 41 GLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLL 120 (374)
T ss_pred ccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCcc
Confidence 35678888899889876532 23367888889999988888899999999998653 333444321
Q ss_pred -----CCcEEEecCCC
Q 032570 72 -----QILVIRVPLLS 82 (138)
Q Consensus 72 -----~~PVIgvP~~~ 82 (138)
.+|+|.||+..
T Consensus 121 ~~~~~~~p~i~VPTta 136 (374)
T cd08189 121 KVKKPLPPLFAIPTTA 136 (374)
T ss_pred ccCCCCCCEEEEECCC
Confidence 27999999974
No 33
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=95.26 E-value=0.1 Score=43.57 Aligned_cols=73 Identities=14% Similarity=0.007 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhc-CCeEEEEecCc-CCchhHHhhhccCCcEEEecCCC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGV-EAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~-~~~viIa~AG~-~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
.+.+++.+.|++.++ .++.+.. ..+-..+.++.+..+.. +.++||++-|+ ..-+++++|.+..+|+|.||+..
T Consensus 35 ~~~~~~~~~L~~~~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~~~~p~i~vPTt~ 109 (331)
T cd08174 35 GVGEQVAESLKTSFS-AEVEAVE-EVSNSDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFLRGIPLSVPTTNL 109 (331)
T ss_pred cHHHHHHHHHHhccC-ceEEEec-CCCccCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhhcCCCEEEecCcc
Confidence 346788888888777 3333332 23334444444434332 58999988886 56789999999999999999974
No 34
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=95.22 E-value=0.067 Score=45.71 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhh----------------
Q 032570 8 PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA---------------- 69 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~---------------- 69 (138)
...++..+.|++.|+++++. -...+.+.+.+.+.++.++..++++||++-|++.. .+=.+|.
T Consensus 44 g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~ 123 (379)
T TIGR02638 44 GVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGV 123 (379)
T ss_pred cchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCC
Confidence 36678889999999976542 12367888999999988888899999999998754 2212221
Q ss_pred ----ccCCcEEEecCCCC
Q 032570 70 ----NSQILVIRVPLLSE 83 (138)
Q Consensus 70 ----~t~~PVIgvP~~~~ 83 (138)
...+|+|.||+..+
T Consensus 124 ~~~~~~~~P~i~IPTTag 141 (379)
T TIGR02638 124 APTKKPGVPIIAIPTTAG 141 (379)
T ss_pred CccCCCCCCEEEECCCCc
Confidence 13479999999753
No 35
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=95.19 E-value=0.067 Score=45.65 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCch-hHHhh-----------------
Q 032570 8 PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL-SGVAA----------------- 68 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L-~gvva----------------- 68 (138)
...+++.+.|++.|+.+.+- -...|-+-+.+.+.++.+++.++++||++-|++.-= +=.+|
T Consensus 43 ~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~ 122 (377)
T cd08176 43 GVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAK 122 (377)
T ss_pred CcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCc
Confidence 46778899999999976542 133588888999999988888999999999987611 11111
Q ss_pred -hccCCcEEEecCCC
Q 032570 69 -ANSQILVIRVPLLS 82 (138)
Q Consensus 69 -~~t~~PVIgvP~~~ 82 (138)
-...+|+|.||+..
T Consensus 123 ~~~~~~P~i~IPTta 137 (377)
T cd08176 123 SKKPAVPIVAINTTA 137 (377)
T ss_pred cCCCCCCEEEeCCCC
Confidence 12568999999964
No 36
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=95.18 E-value=0.073 Score=44.96 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc----hhHHhhhc------------
Q 032570 8 PVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSGVAAAN------------ 70 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V-~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~----L~gvva~~------------ 70 (138)
+..++..+.|++-|+++.+-- ...|-+.+.+.+.++.+++.++++||++-|++.- .-.+...+
T Consensus 36 ~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~ 115 (366)
T PF00465_consen 36 GLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGP 115 (366)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECS
T ss_pred ccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhcc
Confidence 367888888999999875433 6789999999999999999999999999998642 22222221
Q ss_pred ----cCCcEEEecCCCC
Q 032570 71 ----SQILVIRVPLLSE 83 (138)
Q Consensus 71 ----t~~PVIgvP~~~~ 83 (138)
..+|+|.||+..+
T Consensus 116 ~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 116 PPTKPALPLIAIPTTAG 132 (366)
T ss_dssp CCSS--SEEEEEESSSS
T ss_pred ccccCCCcEEEeeCCcc
Confidence 1289999999754
No 37
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=95.12 E-value=0.1 Score=44.65 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhH-Hhhhc---------------
Q 032570 8 PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAAN--------------- 70 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~g-vva~~--------------- 70 (138)
...++..+.|++.|+.+.+. -..+|-+.+.+.+.++.++..++++||++-|++..=.+ .++..
T Consensus 44 ~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~ 123 (382)
T cd08187 44 GLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKA 123 (382)
T ss_pred CcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccC
Confidence 34678888999988865432 23467778899999888888899999999998764332 44332
Q ss_pred ---cCCcEEEecCCC
Q 032570 71 ---SQILVIRVPLLS 82 (138)
Q Consensus 71 ---t~~PVIgvP~~~ 82 (138)
..+|+|.||+..
T Consensus 124 ~~~~~~P~iaIPTTa 138 (382)
T cd08187 124 KIEKALPVGTVLTLA 138 (382)
T ss_pred CCCCCCCEEEEeCCC
Confidence 368999999964
No 38
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=94.87 E-value=0.12 Score=44.46 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC
Q 032570 8 PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 61 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a 61 (138)
...+++.+.|++.|+.+.+- -...+.+.+.+.+.++.+++.++++||++-|++.
T Consensus 36 g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (398)
T cd08178 36 GYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSP 90 (398)
T ss_pred ccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 46778888999999876532 2346788889999998888889999999999764
No 39
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=94.87 E-value=0.15 Score=43.84 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHH-hCCCeEEEEEccCCCc-------hHHHHHHHHhhh-cCCeEEEEecCcCCchhHHhhhcc----CCc
Q 032570 8 PVMNDAARTLSD-FGVPYEIKILPPHQNC-------KEALSYALSAKE-RGIKIIIVGDGVEAHLSGVAAANS----QIL 74 (138)
Q Consensus 8 ~~~~~~~~~L~~-~gi~~~~~V~SaHR~p-------~~~~~~~~~~~~-~~~~viIa~AG~~a~L~gvva~~t----~~P 74 (138)
...++.++.+++ .+-||-+-.-+ ++| +-..|+.++.+. ..++-++++.|..+..+|++++.. ..+
T Consensus 132 ~~~~~~~e~~~~~g~kpyvIp~GG--~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ 209 (323)
T COG2515 132 ASAEELAEEVRKQGGKPYVIPEGG--SSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVE 209 (323)
T ss_pred hhhHHHHHHHHhcCCCCcEeccCC--cCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCc
Confidence 455666666664 45555554433 444 455667766664 679999999999999999999987 899
Q ss_pred EEEecCCCC
Q 032570 75 VIRVPLLSE 83 (138)
Q Consensus 75 VIgvP~~~~ 83 (138)
|||||++..
T Consensus 210 ViG~~v~~~ 218 (323)
T COG2515 210 VIGIDVSAD 218 (323)
T ss_pred eEEEeecCC
Confidence 999999864
No 40
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.78 E-value=0.31 Score=43.96 Aligned_cols=73 Identities=18% Similarity=0.108 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHhhhc---CCeEEEEecCc-CCchhHHhhh--ccCCcEEEec
Q 032570 9 VMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKER---GIKIIIVGDGV-EAHLSGVAAA--NSQILVIRVP 79 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~Sa---HR~p~~~~~~~~~~~~~---~~~viIa~AG~-~a~L~gvva~--~t~~PVIgvP 79 (138)
+.++..+.|+..|+.+...+... +++.+.+.+..+.+.+. +.+++|++-|+ ..-+++++|+ +--.|+|.||
T Consensus 223 ~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vP 302 (542)
T PRK14021 223 HSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCP 302 (542)
T ss_pred HHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeC
Confidence 56778888888888654444432 34556666655555443 58999998886 6779999996 6899999999
Q ss_pred CC
Q 032570 80 LL 81 (138)
Q Consensus 80 ~~ 81 (138)
+.
T Consensus 303 TT 304 (542)
T PRK14021 303 TS 304 (542)
T ss_pred Ch
Confidence 94
No 41
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=94.72 E-value=0.17 Score=42.92 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCch-hHHhhh-----------------
Q 032570 9 VMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL-SGVAAA----------------- 69 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L-~gvva~----------------- 69 (138)
..++..+.|++.|+.+.+. -...+-+-+.+.+.++.+++.++++||++-|++..= +-.++.
T Consensus 42 ~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~ 121 (357)
T cd08181 42 SLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKY 121 (357)
T ss_pred cHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhccccc
Confidence 4577888899989876542 234688888899999999888999999999997642 224432
Q ss_pred ccCCcEEEecCCC
Q 032570 70 NSQILVIRVPLLS 82 (138)
Q Consensus 70 ~t~~PVIgvP~~~ 82 (138)
...+|+|.||+..
T Consensus 122 ~~~~P~i~VPTta 134 (357)
T cd08181 122 LKALPVVAIPTTA 134 (357)
T ss_pred CCCCCEEEEeCCC
Confidence 2358999999975
No 42
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.62 E-value=0.1 Score=44.00 Aligned_cols=70 Identities=21% Similarity=0.110 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHHhhhcCCeEEEEecCcC-CchhHHhhhccCCcEEEecCCC
Q 032570 10 MNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~S-aHR~p~~~~~~~~~~~~~~~~viIa~AG~~-a~L~gvva~~t~~PVIgvP~~~ 82 (138)
.++..+.|++.++.+. +.+ . .+-+.+.+.++.+++.++++||++-|++ --++..+|.....|+|.||+..
T Consensus 39 ~~~l~~~L~~~~~~~~--~~~~~-p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~p~i~VPTT~ 110 (347)
T cd08172 39 KPYLPESLAAGEAFVL--RYDGE-CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGVPVITVPTLA 110 (347)
T ss_pred HHHHHHHHhcCeEEEE--EeCCC-CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCCCEEEecCcc
Confidence 3444444444455432 222 3 7778888998888888999999998874 5688888888899999999974
No 43
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=94.56 E-value=0.21 Score=42.54 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhH-Hhhh----------------
Q 032570 8 PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA---------------- 69 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~g-vva~---------------- 69 (138)
...++..+.|++.|+++.+. =...|-+.+.+.+.++.+++.++++||++-|+|.-=.+ .+|.
T Consensus 39 g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~~ 118 (375)
T cd08179 39 GFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKPF 118 (375)
T ss_pred ChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhccc
Confidence 45578888899888876432 13368888999999999988899999999998753221 2221
Q ss_pred -----ccCCcEEEecCCC
Q 032570 70 -----NSQILVIRVPLLS 82 (138)
Q Consensus 70 -----~t~~PVIgvP~~~ 82 (138)
...+|+|.||+..
T Consensus 119 ~~~~~~~~~p~iaIPTta 136 (375)
T cd08179 119 TLPELRNKARFCAIPSTS 136 (375)
T ss_pred cccccCCCCCEEEeCCCC
Confidence 1247999999964
No 44
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=94.54 E-value=0.14 Score=43.87 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhh---h-----------
Q 032570 6 DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAA---A----------- 69 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva---~----------- 69 (138)
+....+++.+.|++.|+.+++. =...+.+.+.+.+.++.+++.++++||++-|++.. ++-+++ .
T Consensus 43 ~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~ 122 (382)
T PRK10624 43 KCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLE 122 (382)
T ss_pred hCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHh
Confidence 3457788899999999976542 12256677888888888888899999999998643 221222 1
Q ss_pred ------ccCCcEEEecCCC
Q 032570 70 ------NSQILVIRVPLLS 82 (138)
Q Consensus 70 ------~t~~PVIgvP~~~ 82 (138)
...+|+|.||+..
T Consensus 123 ~~~~~~~~~~p~i~VPTTa 141 (382)
T PRK10624 123 GVAPTKKPSVPIIAIPTTA 141 (382)
T ss_pred CcCcccCCCCCEEEECCCC
Confidence 1247999999974
No 45
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=94.52 E-value=0.14 Score=43.77 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh----HHhhhc------------
Q 032570 8 PVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS----GVAAAN------------ 70 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V-~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~----gvva~~------------ 70 (138)
...+++.+.|++.|+.+.+.- ...+-+.+.+.+.++.++..++++||++-|++..=. ++++.+
T Consensus 43 ~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~ 122 (377)
T cd08188 43 GWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDK 122 (377)
T ss_pred ccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCccc
Confidence 356788889999998765421 224566677888888888888999999999864322 222221
Q ss_pred ---cCCcEEEecCCC
Q 032570 71 ---SQILVIRVPLLS 82 (138)
Q Consensus 71 ---t~~PVIgvP~~~ 82 (138)
..+|+|.||+..
T Consensus 123 ~~~~~~p~i~IPTT~ 137 (377)
T cd08188 123 ITRPLPPLICIPTTA 137 (377)
T ss_pred ccCCCCCEEEECCCC
Confidence 147999999975
No 46
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=94.40 E-value=0.13 Score=44.20 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhH-Hhhh--------------
Q 032570 6 DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA-------------- 69 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~-~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~g-vva~-------------- 69 (138)
+....++..+.|++.|+.+.+ .=...+-+.+.+.+.++.++..++++||++-|+|.-=.+ +++.
T Consensus 44 ~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~ 123 (383)
T PRK09860 44 KLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGV 123 (383)
T ss_pred hCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCc
Confidence 345678899999999987532 123357777889999998988899999999998753222 1111
Q ss_pred ----ccCCcEEEecCCC
Q 032570 70 ----NSQILVIRVPLLS 82 (138)
Q Consensus 70 ----~t~~PVIgvP~~~ 82 (138)
...+|+|.||+..
T Consensus 124 ~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 124 DRSAKPQLPMIAINTTA 140 (383)
T ss_pred CccCCCCCCEEEEeCCC
Confidence 2468999999965
No 47
>PLN02834 3-dehydroquinate synthase
Probab=94.40 E-value=0.24 Score=43.63 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhCCCeEE--EEEc---cCCCchHHHHHHHHhhhcCCe---EEEEecCc-CCchhHHhhh--ccCCcEEE
Q 032570 9 VMNDAARTLSDFGVPYEI--KILP---PHQNCKEALSYALSAKERGIK---IIIVGDGV-EAHLSGVAAA--NSQILVIR 77 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~--~V~S---aHR~p~~~~~~~~~~~~~~~~---viIa~AG~-~a~L~gvva~--~t~~PVIg 77 (138)
+.+++.+.|+.-|+++++ .+.. .+++.+.+.+..+.+.+.+++ +||++-|+ ..-+++++|+ .-..|+|.
T Consensus 115 ~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~rgiplI~ 194 (433)
T PLN02834 115 YLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASYQRGVNFVQ 194 (433)
T ss_pred HHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHhcCCCCEEE
Confidence 667888889888987665 3433 467888888888877776666 99999887 5678888874 45789999
Q ss_pred ecCC
Q 032570 78 VPLL 81 (138)
Q Consensus 78 vP~~ 81 (138)
||+.
T Consensus 195 VPTT 198 (433)
T PLN02834 195 IPTT 198 (433)
T ss_pred ECCc
Confidence 9995
No 48
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=94.30 E-value=0.22 Score=43.19 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc
Q 032570 8 PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 62 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~ 62 (138)
...+++.+.|++.|+.+.+. -...+-+.+.+.+.++.+++.++++||++-|++..
T Consensus 38 g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 38 PPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred chHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 35688888899989987642 23467888899999998988899999999999754
No 49
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=94.25 E-value=0.083 Score=44.42 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC-chhHHhhhccCCcEEEecCCC
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a-~L~gvva~~t~~PVIgvP~~~ 82 (138)
..++..+.|++.++. .+.-...|-+.+.+.+.++.+++.++++||++-|++. -++.+++....+|+|.||+..
T Consensus 38 ~~~~v~~~l~~~~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~p~i~IPTta 111 (337)
T cd08177 38 LAERVASALGDRVAG-TFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGLPIIAIPTTL 111 (337)
T ss_pred HHHHHHHHhccCCcE-EeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcCCEEEEcCCc
Confidence 555677777765432 1122235777788888888888888999999998754 567788877799999999964
No 50
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=94.08 E-value=0.34 Score=42.11 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEE--------ccCCCchHHHHHHHHhhhcCCe---EEEEecCc-CCchhHHhhh--ccCCc
Q 032570 9 VMNDAARTLSDFGVPYEIKIL--------PPHQNCKEALSYALSAKERGIK---IIIVGDGV-EAHLSGVAAA--NSQIL 74 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~--------SaHR~p~~~~~~~~~~~~~~~~---viIa~AG~-~a~L~gvva~--~t~~P 74 (138)
..++..+.|++-|+++++... ..+-.++.+.++.+.+.+.+++ +||++-|+ ..-+++++|+ +-..|
T Consensus 60 l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~~~rgip 139 (389)
T PRK06203 60 LLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAATAHRGVR 139 (389)
T ss_pred HHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHHhcCCCC
Confidence 456777778777887643221 2233336677777766665555 99999888 5568888886 33589
Q ss_pred EEEecCC
Q 032570 75 VIRVPLL 81 (138)
Q Consensus 75 VIgvP~~ 81 (138)
.|.||+.
T Consensus 140 ~I~IPTT 146 (389)
T PRK06203 140 LIRIPTT 146 (389)
T ss_pred EEEEcCC
Confidence 9999996
No 51
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=93.94 E-value=0.19 Score=42.04 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhh---c----cCCcEEEec
Q 032570 9 VMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA---N----SQILVIRVP 79 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~-~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~---~----t~~PVIgvP 79 (138)
..+++.+.|++- +.+.+ .-...+.+.+.+.+.++.+++.++++||++-|++.. .+..++. + ...|+|.||
T Consensus 38 ~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VP 116 (332)
T cd08180 38 MLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIP 116 (332)
T ss_pred cHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeC
Confidence 456666777665 55432 122467788888898888888899999999998765 4434432 2 237999999
Q ss_pred CCC
Q 032570 80 LLS 82 (138)
Q Consensus 80 ~~~ 82 (138)
+..
T Consensus 117 Tta 119 (332)
T cd08180 117 TTS 119 (332)
T ss_pred CCC
Confidence 964
No 52
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=93.87 E-value=0.25 Score=42.38 Aligned_cols=74 Identities=24% Similarity=0.260 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhhcc-----------
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANS----------- 71 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~Sa---HR~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~~t----------- 71 (138)
....+++.+.|++-|+.+++ .+- +-..+.+.+.++.+++.++++||++-|++.. .+-.+|...
T Consensus 36 ~~~~~~v~~~L~~~~~~~~~--f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~ 113 (386)
T cd08191 36 TPVFAELVQALAAAGVEVEV--FDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYG 113 (386)
T ss_pred cchHHHHHHHHHHcCCeEEE--ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhC
Confidence 35678888889988987643 332 3345556666777777889999999998653 333444332
Q ss_pred -------CCcEEEecCCC
Q 032570 72 -------QILVIRVPLLS 82 (138)
Q Consensus 72 -------~~PVIgvP~~~ 82 (138)
.+|+|.||+..
T Consensus 114 ~~~~~~~~~p~i~IPTta 131 (386)
T cd08191 114 EFKVPGPVLPLIAVPTTA 131 (386)
T ss_pred ccccCCCCCCEEEEeCCC
Confidence 68999999974
No 53
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=93.67 E-value=0.53 Score=41.01 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=55.4
Q ss_pred CchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh-ccCCcEEEecCCCCCCCchhhhhhhcCCCCCeeeEEecCCchh
Q 032570 34 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKN 112 (138)
Q Consensus 34 ~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~-~t~~PVIgvP~~~~~~~G~dLlS~lqmP~GvpvatV~I~~~~n 112 (138)
|-+.+...++++.++|.++ |++||+.+..--+..+ --..||+|+|.-.... |||+ --.|+-
T Consensus 85 Ta~DT~~~~r~~~~~gVdl-IvfaGGDGTarDVa~av~~~vPvLGipaGvk~~------------Sgvf-----A~~P~~ 146 (355)
T COG3199 85 TAEDTINAVRRMVERGVDL-IVFAGGDGTARDVAEAVGADVPVLGIPAGVKNY------------SGVF-----ALSPED 146 (355)
T ss_pred cHHHHHHHHHHHHhcCceE-EEEeCCCccHHHHHhhccCCCceEeecccccee------------cccc-----ccChHH
Confidence 3466777788888888776 5678888888888888 8899999999976542 3422 228899
Q ss_pred HHHHHHHHHcc
Q 032570 113 AALYAVKVLGI 123 (138)
Q Consensus 113 AA~~AaqIl~~ 123 (138)
||.++.+++.-
T Consensus 147 aa~l~~~~lkg 157 (355)
T COG3199 147 AARLLGAFLKG 157 (355)
T ss_pred HHHHHHHHhcc
Confidence 99999998876
No 54
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=93.66 E-value=0.4 Score=40.73 Aligned_cols=72 Identities=21% Similarity=0.185 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHH-hCCCeEEEEEc---cCCCchHHHHHHHHhhhc---CCeEEEEecCc-CCchhHHhhh--ccCCcEEE
Q 032570 8 PVMNDAARTLSD-FGVPYEIKILP---PHQNCKEALSYALSAKER---GIKIIIVGDGV-EAHLSGVAAA--NSQILVIR 77 (138)
Q Consensus 8 ~~~~~~~~~L~~-~gi~~~~~V~S---aHR~p~~~~~~~~~~~~~---~~~viIa~AG~-~a~L~gvva~--~t~~PVIg 77 (138)
.+.++..+.|+. .++. +.+.+ .+++.+.+.++.+.+.+. +.++||++-|+ ..-+++++|+ +-..|.|.
T Consensus 37 ~~~~~v~~~L~~~~~~~--~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~rgip~i~ 114 (344)
T cd08169 37 LIAHYIAEYLSKILPVH--ILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTLFRGIAFIR 114 (344)
T ss_pred HHHHHHHHHHHhhcCce--EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhccCCcEEE
Confidence 466778888877 6664 33444 477888888887777643 48999999887 5568889887 45889999
Q ss_pred ecCC
Q 032570 78 VPLL 81 (138)
Q Consensus 78 vP~~ 81 (138)
||+.
T Consensus 115 VPTT 118 (344)
T cd08169 115 VPTT 118 (344)
T ss_pred ecCC
Confidence 9995
No 55
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=93.60 E-value=0.24 Score=40.33 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhCCCe---EEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccC-CcEEEecC
Q 032570 8 PVMNDAARTLSDFGVPY---EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ-ILVIRVPL 80 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~---~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~-~PVIgvP~ 80 (138)
+..+-.++.|++.|+.- ++.+..+++.++++.+++++....++++||++...++ .. +...... .||+-|-+
T Consensus 15 ~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa-~~-~~~~~~~~iPVVf~~V 89 (294)
T PF04392_consen 15 DIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAA-QA-LAKHLKDDIPVVFCGV 89 (294)
T ss_dssp HHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHH-HH-HHHH-SS-S-EEEECE
T ss_pred HHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHH-HH-HHHhcCCCcEEEEEec
Confidence 45677788899999875 7888999999999999999998889999999865543 22 3333445 89998887
No 56
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=93.52 E-value=0.29 Score=42.15 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEE
Q 032570 8 PVMNDAARTLSDFGV-PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIR 77 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi-~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIg 77 (138)
...+-+.+.|+++|. ..++.+-++|-.+....++.++...++++|+|++++-++. .+++.-.++||+-
T Consensus 46 ~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq--~~~s~~~~iPVV~ 114 (322)
T COG2984 46 AAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQ--ALVSATKTIPVVF 114 (322)
T ss_pred HHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHHH--HHHHhcCCCCEEE
Confidence 456678889999999 7889999999999999999999999999999999987654 4666667799984
No 57
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.51 E-value=1.4 Score=39.92 Aligned_cols=116 Identities=10% Similarity=0.121 Sum_probs=76.3
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHH-HHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCCCCCCchh
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD 89 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~-~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~~~~~G~d 89 (138)
+-+.++..++.-..++.|. -...++..+++ +....++++|||.-.|. +..+-.++++|||-++++. .|
T Consensus 17 ~~~~~i~~~~~~~~~~~v~--~~~~~~~~~~a~~~~~~~~~dviIsrG~t----a~~i~~~~~iPVv~i~~s~-----~D 85 (526)
T TIGR02329 17 DLFRDIAPEFDHRANITPI--QLGFEDAVREIRQRLGAERCDVVVAGGSN----GAYLKSRLSLPVIVIKPTG-----FD 85 (526)
T ss_pred HHHHHHHHhCCCCceEEEE--eccHHHHHHHHHHHHHhCCCcEEEECchH----HHHHHHhCCCCEEEecCCh-----hh
Confidence 3344455566533333332 34457777777 44667789999995544 4566678899999998764 56
Q ss_pred hhhhhcCCCC--CeeeEEecCCchhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 032570 90 VINSIRMPSH--VQVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE 137 (138)
Q Consensus 90 LlS~lqmP~G--vpvatV~I~~~~nAA~~AaqIl~~~--------~~~l~~kl~~~~~ 137 (138)
+|..++-... -.+++|+-.+-.+.+..-.++|++. .++++..+++.|+
T Consensus 86 il~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~ 143 (526)
T TIGR02329 86 VMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA 143 (526)
T ss_pred HHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 4555543222 2488898888888888888888763 3477777777765
No 58
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=93.39 E-value=0.49 Score=41.05 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCCeEEE--E--Ec---cCCCc-hHHHHHHHHhhhcCCe---EEEEecCc-CCchhHHhhh--ccCCcE
Q 032570 10 MNDAARTLSDFGVPYEIK--I--LP---PHQNC-KEALSYALSAKERGIK---IIIVGDGV-EAHLSGVAAA--NSQILV 75 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~--V--~S---aHR~p-~~~~~~~~~~~~~~~~---viIa~AG~-~a~L~gvva~--~t~~PV 75 (138)
.++....|+.-|+++++. + .. .++++ +.+.++.+.+.+.+++ ++|++-|+ ..-+++++|+ +--.|.
T Consensus 49 ~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~~~rGip~ 128 (369)
T cd08198 49 ASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAATAHRGVRL 128 (369)
T ss_pred HHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHHhcCCCCE
Confidence 466666777668665422 2 11 34553 5667777777666666 99999888 5668999987 446899
Q ss_pred EEecCC
Q 032570 76 IRVPLL 81 (138)
Q Consensus 76 IgvP~~ 81 (138)
|.||+.
T Consensus 129 I~IPTT 134 (369)
T cd08198 129 IRIPTT 134 (369)
T ss_pred EEECCC
Confidence 999997
No 59
>PRK13055 putative lipid kinase; Reviewed
Probab=93.37 E-value=0.7 Score=38.83 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=51.9
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhcc---CCcEEE-
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS---QILVIR- 77 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t---~~PVIg- 77 (138)
|+.+.....+++...|++.|+.+++....-+ +....++++++..++++++| ++|+.+.|--++.++. ..|.+|
T Consensus 14 G~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vv-v~GGDGTl~evvngl~~~~~~~~Lgi 90 (334)
T PRK13055 14 GQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLII-AAGGDGTINEVVNGIAPLEKRPKMAI 90 (334)
T ss_pred CchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEE-EECCCCHHHHHHHHHhhcCCCCcEEE
Confidence 4444456678888999999998777665433 33445566655556678666 6688999988888764 235566
Q ss_pred ecCCC
Q 032570 78 VPLLS 82 (138)
Q Consensus 78 vP~~~ 82 (138)
+|.-+
T Consensus 91 iP~GT 95 (334)
T PRK13055 91 IPAGT 95 (334)
T ss_pred ECCCc
Confidence 45433
No 60
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=92.77 E-value=0.69 Score=37.58 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=51.1
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhcc---CCcEEE-
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS---QILVIR- 77 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t---~~PVIg- 77 (138)
|+.......+++.+.|++.|+++++.... ++ ....++++....++++++| ++|+.+.+--++-+.- ..|.|+
T Consensus 13 g~~~~~~~~~~i~~~l~~~~~~~~~~~t~-~~--~~~~~~~~~~~~~~~d~iv-v~GGDGTl~~v~~~l~~~~~~~~lgi 88 (293)
T TIGR00147 13 GKSNDNKPLREVIMLLREEGMEIHVRVTW-EK--GDAARYVEEARKFGVDTVI-AGGGDGTINEVVNALIQLDDIPALGI 88 (293)
T ss_pred cchhhHHHHHHHHHHHHHCCCEEEEEEec-Cc--ccHHHHHHHHHhcCCCEEE-EECCCChHHHHHHHHhcCCCCCcEEE
Confidence 44455677888999999999988765442 32 1223444444445677655 5788999998887743 357788
Q ss_pred ecCCC
Q 032570 78 VPLLS 82 (138)
Q Consensus 78 vP~~~ 82 (138)
+|.-+
T Consensus 89 iP~Gt 93 (293)
T TIGR00147 89 LPLGT 93 (293)
T ss_pred EcCcC
Confidence 77754
No 61
>PRK11914 diacylglycerol kinase; Reviewed
Probab=92.62 E-value=1.1 Score=36.94 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=53.4
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhc--cCCcEEEec
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIRVP 79 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~--t~~PVIgvP 79 (138)
|+.......+++.+.|++.|+++++.... + +....++++++..+++++|| ++|+.+.+--++-++ +..|+--+|
T Consensus 20 G~g~~~~~~~~~~~~l~~~g~~~~~~~t~--~-~~~~~~~a~~~~~~~~d~vv-v~GGDGTi~evv~~l~~~~~~lgiiP 95 (306)
T PRK11914 20 GHGAAPHAAERAIARLHHRGVDVVEIVGT--D-AHDARHLVAAALAKGTDALV-VVGGDGVISNALQVLAGTDIPLGIIP 95 (306)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEEeC--C-HHHHHHHHHHHHhcCCCEEE-EECCchHHHHHhHHhccCCCcEEEEe
Confidence 34445667888888999999877665442 2 67788888877677778654 778888888888765 445544455
Q ss_pred CCC
Q 032570 80 LLS 82 (138)
Q Consensus 80 ~~~ 82 (138)
.-+
T Consensus 96 ~GT 98 (306)
T PRK11914 96 AGT 98 (306)
T ss_pred CCC
Confidence 544
No 62
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.43 Score=32.35 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHH
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 44 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~ 44 (138)
.++=|+|.++++.|++.|++|+......|.. ++..++++.
T Consensus 8 ~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~ 47 (80)
T COG0695 8 KPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKR 47 (80)
T ss_pred CCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHH
Confidence 4556899999999999999999988877665 566666653
No 63
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=92.49 E-value=0.92 Score=38.82 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHhhhcCC---eEEEEecCcC-CchhHHhhh--ccCCcEEEec
Q 032570 9 VMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGVE-AHLSGVAAA--NSQILVIRVP 79 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~S---aHR~p~~~~~~~~~~~~~~~---~viIa~AG~~-a~L~gvva~--~t~~PVIgvP 79 (138)
+.++..+.|+ ++ ++.+.+ .+++.+.+.+..+.+.+.++ +++|++.|++ .-+++++|+ .-..|.|.+|
T Consensus 34 ~~~~l~~~L~--~~--~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~~rgi~~i~iP 109 (346)
T cd08196 34 YRDRLDLPLD--AA--PVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIYMRGVSWSFVP 109 (346)
T ss_pred HHHHHHHHhc--CC--eEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEEec
Confidence 4444454444 33 344444 59999999999988888777 7999998884 569999985 4578999999
Q ss_pred CC
Q 032570 80 LL 81 (138)
Q Consensus 80 ~~ 81 (138)
+.
T Consensus 110 TT 111 (346)
T cd08196 110 TT 111 (346)
T ss_pred cc
Confidence 85
No 64
>PRK10586 putative oxidoreductase; Provisional
Probab=92.24 E-value=0.74 Score=39.48 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCch-hHHhhhccCCcEEEecCCCC
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL-SGVAAANSQILVIRVPLLSE 83 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L-~gvva~~t~~PVIgvP~~~~ 83 (138)
++..+.|++-|+.+ .+.+-+-+.+.+.++.+..+ .++++||++-|++..= +=.+|....+|+|.||+..+
T Consensus 51 ~~~~~~l~~~~~~~--~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~~~~p~i~vPT~a~ 121 (362)
T PRK10586 51 PYLPPAFELPGAKH--ILFRGHCSESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARRLGLPFVAIPTIAA 121 (362)
T ss_pred HHHHHHHHHcCCeE--EEeCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhhcCCCEEEEeCCcc
Confidence 44556677777644 34455556777777766554 4789999999986543 33666777899999999643
No 65
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=92.19 E-value=0.5 Score=41.16 Aligned_cols=73 Identities=21% Similarity=0.224 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC-chhHHhhhccCCcEEEecCCCC
Q 032570 10 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQILVIRVPLLSE 83 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a-~L~gvva~~t~~PVIgvP~~~~ 83 (138)
.++..+.|+..|+ ...-+..-+-+-++++++.+.....+++++|++-|+.. -.+=++|-...+|+|.||+..+
T Consensus 46 ~~~~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT~AS 119 (360)
T COG0371 46 GEKVEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGLPFISVPTIAS 119 (360)
T ss_pred HHHHHHHhcccCc-ceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCCCEEEecCccc
Confidence 3455566677776 34445556777788988888777678999999988854 4777888899999999999864
No 66
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=92.16 E-value=0.19 Score=44.04 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=53.6
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCe-EEEEecCcCCchhHHhhhccCCcEEEecCCC
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK-IIIVGDGVEAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~-viIa~AG~~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
+.-+..+..=| +++.++|+|..++.-..+.++++..+.. ++++++|+++.|+-|.++++ .||=.+++..
T Consensus 253 sr~a~~a~~~~--~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~-~~~~~v~v~~ 322 (373)
T KOG2835|consen 253 SRYATSAKSRG--VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNG-VPVATVAVNN 322 (373)
T ss_pred hhhhhhcccCc--eEEEEeccCCCCCChhhHHhhccccCcceeeeecccccccccceeccCC-ccccccccCC
Confidence 33333444444 6899999999999999999888765555 89999999999999999999 5665555543
No 67
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=91.88 E-value=0.25 Score=40.68 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHhhhcCCeEEEEecCc-CCchhHHhhhccCCcEEEecCCCCCCCc
Q 032570 10 MNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQILVIRVPLLSEDWSE 87 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V-~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~-~a~L~gvva~~t~~PVIgvP~~~~~~~G 87 (138)
.++..+.|+..|+++.+-. ...+-+-+.+.++.+.++..+++++|++-|+ ..-+.=++|.++.+|.|.||+..+ .+|
T Consensus 35 g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~~p~isVPTa~S-~DG 113 (250)
T PF13685_consen 35 GEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFELGIPFISVPTAAS-HDG 113 (250)
T ss_dssp HHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHHT--EEEEES--S-SGG
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcCCCEEEeccccc-ccc
Confidence 4677788888898776322 1122244556666666666688888887665 677999999999999999999864 555
Q ss_pred hh-hhhhhcC---------CCCCeeeEEecC-----------CchhHHHHHHHHHccCCHHHHHHH
Q 032570 88 DD-VINSIRM---------PSHVQVASVPRN-----------NAKNAALYAVKVLGIADEDLLERI 132 (138)
Q Consensus 88 ~d-LlS~lqm---------P~GvpvatV~I~-----------~~~nAA~~AaqIl~~~~~~l~~kl 132 (138)
+. -.+++.. |.-.|.+++. | ..-+.+=+..++-++.||.|..++
T Consensus 114 ~aS~~Asl~~~~g~k~s~~~a~~P~aIia-D~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~~~ 178 (250)
T PF13685_consen 114 FASPVASLTVDDGFKVSYGPAKAPIAIIA-DTDIIANAPRRLIAAGFGDLISKYTALADWKLAHEY 178 (250)
T ss_dssp GTSSEEEEEET-TEEEEE-E----SEEEE-EHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCeeEEecCCCceeecCCCCCeEEEE-eHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHHHh
Confidence 44 2222221 3444555443 4 223455567888888888887654
No 68
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=91.68 E-value=4.7 Score=30.77 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
....+.+.+.++++|. ++.+......+++..++++....++++.+|...-... ...+. -....|||.+
T Consensus 15 ~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 15 ADVLQGISDVLEAAGY--QLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT--ERTRQLLRAAGIPVVEI 84 (268)
T ss_pred HHHHHHHHHHHHHcCC--EEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHhcCCCEEEE
Confidence 4455677788889885 5666666778888888888888888998888764433 22332 2346799987
No 69
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=91.65 E-value=0.9 Score=39.72 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc----hhHHhhhcc---------
Q 032570 6 DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSGVAAANS--------- 71 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~----L~gvva~~t--------- 71 (138)
.....+++.+.|+.-||+|.+. -...+-+-+.+.+-++.+++.+++.||++-|+|.. +-.+++.+.
T Consensus 42 ~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i 121 (377)
T COG1454 42 KLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGI 121 (377)
T ss_pred cchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhccc
Confidence 4568999999999999887653 23477777888888888999999999999999853 333444332
Q ss_pred ------CCcEEEecCCC
Q 032570 72 ------QILVIRVPLLS 82 (138)
Q Consensus 72 ------~~PVIgvP~~~ 82 (138)
..|+|.||+..
T Consensus 122 ~~~~~~~~plIaIPTTa 138 (377)
T COG1454 122 GKVKKPKAPLIAIPTTA 138 (377)
T ss_pred ccccCCCCCEEEecCCC
Confidence 17999999975
No 70
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=91.60 E-value=1 Score=36.92 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccC------CcEEEec
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ------ILVIRVP 79 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~------~PVIgvP 79 (138)
.....+++.+.|++-|+.|++... +.+....++++++..+++++|| ++|+.+.+--|+.++.. .|.--+|
T Consensus 12 ~~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP 87 (293)
T TIGR03702 12 DNEDVREAVGDLRDEGIQLHVRVT---WEKGDAQRYVAEALALGVSTVI-AGGGDGTLREVATALAQIRDDAAPALGLLP 87 (293)
T ss_pred chhHHHHHHHHHHHCCCeEEEEEe---cCCCCHHHHHHHHHHcCCCEEE-EEcCChHHHHHHHHHHhhCCCCCCcEEEEc
Confidence 334566777889999998887743 3345556667666556677655 78999999888887641 2455566
Q ss_pred CCCC
Q 032570 80 LLSE 83 (138)
Q Consensus 80 ~~~~ 83 (138)
.-++
T Consensus 88 ~GTg 91 (293)
T TIGR03702 88 LGTA 91 (293)
T ss_pred CCch
Confidence 6543
No 71
>PRK15138 aldehyde reductase; Provisional
Probab=91.51 E-value=0.81 Score=39.45 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc
Q 032570 9 VMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 62 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~ 62 (138)
..+++.+.|+ |+.+.+. -...|-+.+.+.+.++.+++.++++||++-|+|.-
T Consensus 46 ~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 98 (387)
T PRK15138 46 VLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSVL 98 (387)
T ss_pred cHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 3456666665 5544322 12457777889999988888899999999997653
No 72
>PRK13337 putative lipid kinase; Reviewed
Probab=91.40 E-value=1.2 Score=36.69 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhcc---CCcEEEe-cCCC
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS---QILVIRV-PLLS 82 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t---~~PVIgv-P~~~ 82 (138)
....+++...|++.|++|++..... +....++++++..+++++ |+++|+.+.|..++.++. ..|.+|+ |.-+
T Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~t~~---~~~a~~~a~~~~~~~~d~-vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~GT 93 (304)
T PRK13337 18 KKNLPDVLQKLEQAGYETSAHATTG---PGDATLAAERAVERKFDL-VIAAGGDGTLNEVVNGIAEKENRPKLGIIPVGT 93 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecC---CCCHHHHHHHHHhcCCCE-EEEEcCCCHHHHHHHHHhhCCCCCcEEEECCcC
Confidence 4556677888999999888876653 356666666666667776 557788999999998753 2244554 5443
No 73
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.30 E-value=0.61 Score=32.74 Aligned_cols=69 Identities=10% Similarity=-0.010 Sum_probs=44.9
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCC
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
|++.=|+|+++++.|+++|++|++.-..-+..-.+..+.+. . ..+..+.|+|= +.+
T Consensus 14 sk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~---~-------------------~tg~~tvP~Vf--i~g 69 (99)
T TIGR02189 14 SRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALS---R-------------------LGCSPAVPAVF--VGG 69 (99)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHH---H-------------------hcCCCCcCeEE--ECC
Confidence 34556899999999999999998655543322222222221 1 13567889884 445
Q ss_pred CCCCchh-hhhhhc
Q 032570 83 EDWSEDD-VINSIR 95 (138)
Q Consensus 83 ~~~~G~d-LlS~lq 95 (138)
..++|.| |..+.+
T Consensus 70 ~~iGG~ddl~~l~~ 83 (99)
T TIGR02189 70 KLVGGLENVMALHI 83 (99)
T ss_pred EEEcCHHHHHHHHH
Confidence 5678888 887765
No 74
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=91.05 E-value=5.8 Score=30.45 Aligned_cols=71 Identities=8% Similarity=0.044 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh-HHhhhccCCcEEEecC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-GVAAANSQILVIRVPL 80 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~-gvva~~t~~PVIgvP~ 80 (138)
...+.+.+.++++|. ++.+......+++..+.++....++++.+|.......... -.+......||+-+-.
T Consensus 16 ~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ipvV~i~~ 87 (269)
T cd06275 16 EVVRGVEQYCYRQGY--NLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMDW 87 (269)
T ss_pred HHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEec
Confidence 445667777888885 5556666778888888888888888897776554322221 2222234688886644
No 75
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=91.02 E-value=0.88 Score=29.41 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=45.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC--eEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 4 DLDLPVMNDAARTLSDFGVP--YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~--~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
.+.=|.|+++...|++++++ |++.-....+..+.+.+++.+. .+..+.|+|- ..
T Consensus 6 ~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~----------------------~g~~~vP~v~--i~ 61 (84)
T TIGR02180 6 KSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEI----------------------TGQRTVPNIF--IN 61 (84)
T ss_pred CCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHH----------------------hCCCCCCeEE--EC
Confidence 45568999999999999998 7766666666666666654321 2334566663 34
Q ss_pred CCCCCchh-hhhhhc
Q 032570 82 SEDWSEDD-VINSIR 95 (138)
Q Consensus 82 ~~~~~G~d-LlS~lq 95 (138)
+..++|.| +..+.+
T Consensus 62 g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 62 GKFIGGCSDLLALYK 76 (84)
T ss_pred CEEEcCHHHHHHHHH
Confidence 44577877 777765
No 76
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=90.50 E-value=1.2 Score=38.15 Aligned_cols=72 Identities=15% Similarity=0.008 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHhhhc---CCeEEEEecCcCCchhH-Hhhh----------------
Q 032570 11 NDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKER---GIKIIIVGDGVEAHLSG-VAAA---------------- 69 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~~~~~---~~~viIa~AG~~a~L~g-vva~---------------- 69 (138)
++..+.|++-|+.+.+. -...+=+.+.+.+.++.+++. ++++||++-|+|.-=.+ .+|.
T Consensus 39 ~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~ 118 (347)
T cd08184 39 KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDL 118 (347)
T ss_pred hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhccccc
Confidence 45566677778876553 134566667788888777765 89999999998642211 1211
Q ss_pred --ccCCcEEEecCCC
Q 032570 70 --NSQILVIRVPLLS 82 (138)
Q Consensus 70 --~t~~PVIgvP~~~ 82 (138)
...+|+|.||+..
T Consensus 119 ~~~~~~PlIaVPTTa 133 (347)
T cd08184 119 VKNPAVYKIGIPTLS 133 (347)
T ss_pred ccCCCCcEEEEeCCC
Confidence 1247899999964
No 77
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=90.43 E-value=3.1 Score=28.56 Aligned_cols=53 Identities=30% Similarity=0.367 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCch
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 63 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L 63 (138)
...+++.+.++++|++++..+...+...+.+.+++ ++.++++||.+......+
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a---~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRTA---KERQADLIIMGWHGSTSL 108 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHH---HhcCCCEEEEecCCCCCc
Confidence 44556666677789998877765554334555544 456789888888776654
No 78
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.32 E-value=6.9 Score=30.14 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
....+.+.+.++++|. ++-+...+..++...++++....+.++-+|...-. ....-.-.-....|||-+
T Consensus 15 ~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~-~~~~~~~~~~~~iPvV~~ 83 (263)
T cd06280 15 TAVSRAVEDAAYRAGL--RVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTR-ATLRRLAELRLSFPVVLI 83 (263)
T ss_pred HHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-CCchHHHHHhcCCCEEEE
Confidence 3456777788889984 55666778888888888888888788977775432 222211111235788876
No 79
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=90.00 E-value=2.1 Score=34.39 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhc--cCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~--t~~PVIgv 78 (138)
.+.+.+.+.++++|..|++.+...+..+++-.++++++..++++.||..+.....+..++... ...|||.+
T Consensus 16 ~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 16 LVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHHCCCCEEEe
Confidence 455677777888666678888888999998889998888888998887665444455555433 36799875
No 80
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=89.76 E-value=1.4 Score=41.77 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHH--HhCCCeEEEEEc---cCCCchHHHHHHHHhhhcCCeEEEEecCcCC
Q 032570 7 LPVMNDAARTLS--DFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDGVEA 61 (138)
Q Consensus 7 ~~~~~~~~~~L~--~~gi~~~~~V~S---aHR~p~~~~~~~~~~~~~~~~viIa~AG~~a 61 (138)
....+++.+.|+ .-|+.+ .+.+ .|.+.+.+.+.++.+++.++++||++-|++.
T Consensus 494 ~g~~~~v~~~L~~~~~~i~~--~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSv 551 (862)
T PRK13805 494 LGYVDKVTDVLKKRENGVEY--EVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSP 551 (862)
T ss_pred cchHHHHHHHHhcccCCCeE--EEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 346677888888 566644 4443 5777889999999888889999999999864
No 81
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=89.70 E-value=1.9 Score=27.87 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=44.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCCC
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE 83 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~~ 83 (138)
..+=|.|+++.+.|++++++|+..-...+....++.+.+++ +.+..+.|++- ..+.
T Consensus 7 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~----------------------~~g~~~~P~v~--~~g~ 62 (82)
T cd03419 7 KSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQE----------------------LTGQRTVPNVF--IGGK 62 (82)
T ss_pred cCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHH----------------------HhCCCCCCeEE--ECCE
Confidence 34558999999999999999876666666655555444432 22446777763 3344
Q ss_pred CCCchh-hhhhhc
Q 032570 84 DWSEDD-VINSIR 95 (138)
Q Consensus 84 ~~~G~d-LlS~lq 95 (138)
.++|.| +..+.+
T Consensus 63 ~igg~~~~~~~~~ 75 (82)
T cd03419 63 FIGGCDDLMALHK 75 (82)
T ss_pred EEcCHHHHHHHHH
Confidence 567777 666654
No 82
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=89.30 E-value=9.9 Score=30.48 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEecCCCCCC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRVPLLSEDW 85 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgvP~~~~~~ 85 (138)
.+.+.+.+.+++.|. ++.+...+..+++..++++....++++-+|........- ..+. .....||+-+=....
T Consensus 77 ~~~~~i~~~~~~~gy--~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~-- 151 (327)
T TIGR02417 77 RIAKELEQQCREAGY--QLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPED-AYYQKLQNEGLPVVALDRSLD-- 151 (327)
T ss_pred HHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCh-HHHHHHHhcCCCEEEEccccC--
Confidence 455667777778775 556666677888878888887777888777665432111 2222 124578876422111
Q ss_pred CchhhhhhhcCCCCCeeeEEecCCchhHHHHHHHHHc
Q 032570 86 SEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLG 122 (138)
Q Consensus 86 ~G~dLlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~ 122 (138)
+..+..|..||-..+..++-.++.
T Consensus 152 -------------~~~~~~V~~dn~~~~~~~~~~L~~ 175 (327)
T TIGR02417 152 -------------DEHFCSVISDDVDAAAELIERLLS 175 (327)
T ss_pred -------------CCCCCEEEeCcHHHHHHHHHHHHH
Confidence 112344777777766665555553
No 83
>PRK00861 putative lipid kinase; Reviewed
Probab=89.19 E-value=2.3 Score=34.81 Aligned_cols=76 Identities=25% Similarity=0.204 Sum_probs=50.5
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhcc--CCcEEEec
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS--QILVIRVP 79 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t--~~PVIgvP 79 (138)
|+.+.....+++...|++ +++|++....... ...++++++...+++++| ++|+.+.|-.|+.+.. ..|+--+|
T Consensus 14 G~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~~---~a~~~a~~~~~~~~d~vv-~~GGDGTl~evv~~l~~~~~~lgviP 88 (300)
T PRK00861 14 GQGNPEVDLALIRAILEP-EMDLDIYLTTPEI---GADQLAQEAIERGAELII-ASGGDGTLSAVAGALIGTDIPLGIIP 88 (300)
T ss_pred CCCchhhhHHHHHHHHHh-cCceEEEEccCCC---CHHHHHHHHHhcCCCEEE-EECChHHHHHHHHHHhcCCCcEEEEc
Confidence 344445566788888887 4788888876543 445566666556778766 5889999999998874 34444455
Q ss_pred CCC
Q 032570 80 LLS 82 (138)
Q Consensus 80 ~~~ 82 (138)
.-+
T Consensus 89 ~GT 91 (300)
T PRK00861 89 RGT 91 (300)
T ss_pred CCc
Confidence 544
No 84
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=88.67 E-value=1.8 Score=35.12 Aligned_cols=51 Identities=22% Similarity=0.433 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchH-----------HHHHHHHhhhcCCeEEE
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKE-----------ALSYALSAKERGIKIII 54 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~-----------~~~~~~~~~~~~~~viI 54 (138)
.+|++.++++.+.|.+.|||+-+-|+.-|+.|.. +.++++++..+|..|+.
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~l 73 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVL 73 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEE
Confidence 5899999999999999999999999999887766 33455666778877764
No 85
>PRK10481 hypothetical protein; Provisional
Probab=88.42 E-value=2.8 Score=34.20 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCeEEEEEccC-CCchHHHHHHHHhhhcCCe-EEEEecCcCCchhHHhhhccCCcEEE
Q 032570 11 NDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIK-IIIVGDGVEAHLSGVAAANSQILVIR 77 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaH-R~p~~~~~~~~~~~~~~~~-viIa~AG~~a~L~gvva~~t~~PVIg 77 (138)
++..+-..++|.+..+...|.+ -+++.+.+..++....|++ +|+.++|++......+.-.+.+|||-
T Consensus 143 ~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 143 AQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLL 211 (224)
T ss_pred HHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEc
Confidence 3333444455888777777754 4455777777777777888 77889999977789999999999983
No 86
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=88.27 E-value=5.1 Score=29.39 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh-HHhhhccCCcEEEecC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-GVAAANSQILVIRVPL 80 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~-gvva~~t~~PVIgvP~ 80 (138)
...+.+...++++|..+++.+......++...+.+++...++++.+|.......... .-.+.....|+|.+-.
T Consensus 17 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~ 90 (269)
T cd01391 17 QLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDA 90 (269)
T ss_pred HHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCcEEEecC
Confidence 344556667778677778888888888888888888887778898887655433321 1222356789987644
No 87
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=88.06 E-value=6.3 Score=29.46 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEecCC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRVPLL 81 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgvP~~ 81 (138)
...+.+.+.++++|+ ++.+...+..++...+.+++..+++++.+|+.......+. .+.- ....|||.+-..
T Consensus 16 ~~~~g~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-~~~~l~~~~ip~v~~~~~ 88 (264)
T cd01537 16 QVLKGIEEAAKAAGY--QVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT-IVKLARKAGIPVVLVDRD 88 (264)
T ss_pred HHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh-HHHHhhhcCCCEEEeccC
Confidence 445566677778886 5666666777888888888887778998888776655554 3333 456899987543
No 88
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=87.65 E-value=13 Score=29.98 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhc-cCCcEEEecCCCCCCC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN-SQILVIRVPLLSEDWS 86 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~-t~~PVIgvP~~~~~~~ 86 (138)
.+++.+.+.+++.|. .+-++.....+++- ++++...++.++=||.. +....-+-+..-. ...||+-+=.....
T Consensus 18 ~ii~gIe~~a~~~Gy--~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~-s~~~~~~~l~~~~~~~iPvV~~~~~~~~-- 91 (279)
T PF00532_consen 18 EIIRGIEQEAREHGY--QLLLCNTGDDEEKE-EYIELLLQRRVDGIILA-SSENDDEELRRLIKSGIPVVLIDRYIDN-- 91 (279)
T ss_dssp HHHHHHHHHHHHTTC--EEEEEEETTTHHHH-HHHHHHHHTTSSEEEEE-SSSCTCHHHHHHHHTTSEEEEESS-SCT--
T ss_pred HHHHHHHHHHHHcCC--EEEEecCCCchHHH-HHHHHHHhcCCCEEEEe-cccCChHHHHHHHHcCCCEEEEEeccCC--
Confidence 456677777888876 67778888888888 99999988888866655 4444433332221 26899876554322
Q ss_pred chhhhhhhcCCCCCeeeEEecCCchhHHHHHHH-HHccCCHH-------------HHHHHHHHHh
Q 032570 87 EDDVINSIRMPSHVQVASVPRNNAKNAALYAVK-VLGIADED-------------LLERIRKYVE 137 (138)
Q Consensus 87 G~dLlS~lqmP~GvpvatV~I~~~~nAA~~Aaq-Il~~~~~~-------------l~~kl~~~~~ 137 (138)
|.++|+ |.+|| +.|+..|++ ++...... -++|++.|++
T Consensus 92 ----------~~~~~~--V~~D~-~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~ 143 (279)
T PF00532_consen 92 ----------PEGVPS--VYIDN-YEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRD 143 (279)
T ss_dssp ----------TCTSCE--EEEEH-HHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHH
T ss_pred ----------cccCCE--EEEcc-hHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHH
Confidence 224444 55554 444445544 44433333 3567766764
No 89
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=87.60 E-value=11 Score=28.83 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC-chhHHhhhccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a-~L~gvva~~t~~PVIgv 78 (138)
..+.+.+.+.+++.|. ++.+...+..++...++++.....+++.+|....... ..-..+ .....|||.+
T Consensus 15 ~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l-~~~~ipvV~~ 84 (268)
T cd06298 15 AELARGIDDIATMYKY--NIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKISEEHREEF-KRSPTPVVLA 84 (268)
T ss_pred HHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCcHHHHHHH-hcCCCCEEEE
Confidence 3455667777888875 5566667888998888888877778898887643221 111112 2346788876
No 90
>PRK13054 lipid kinase; Reviewed
Probab=87.30 E-value=2.8 Score=34.49 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhcc
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 71 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t 71 (138)
...+++...|++-|++|++... +.+....++++++..++++++| ++|+.+.|..|+.++.
T Consensus 18 ~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-v~GGDGTl~evv~~l~ 77 (300)
T PRK13054 18 EELREAVGLLREEGHTLHVRVT---WEKGDAARYVEEALALGVATVI-AGGGDGTINEVATALA 77 (300)
T ss_pred HHHHHHHHHHHHcCCEEEEEEe---cCCCcHHHHHHHHHHcCCCEEE-EECCccHHHHHHHHHH
Confidence 4566677788999988777444 3345566777766666777655 7899999999998854
No 91
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=87.20 E-value=12 Score=28.85 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc--cCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~S--aHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
...+.+.+.+++.|. ++.+.. ....+++..+++++....+++-+|............+.- ....|||.+
T Consensus 16 ~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 16 AVKAGAEAAAKELGV--KVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred HHHHHHHHHHHHcCC--EEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEe
Confidence 445666677788876 455543 256888888888887777889777765433323334433 346799876
No 92
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=87.08 E-value=2.1 Score=36.31 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHhhhcC--CeEEEEecCcCCc-hhHHhhhc------------
Q 032570 7 LPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERG--IKIIIVGDGVEAH-LSGVAAAN------------ 70 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~-~V~SaHR~p~~~~~~~~~~~~~~--~~viIa~AG~~a~-L~gvva~~------------ 70 (138)
....++..+.|++. .+.+ .=.-.|.+.+.+.+..+.++..+ +++||++-|++.. .+..++..
T Consensus 37 ~g~~~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~ 114 (355)
T TIGR03405 37 LGLARRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQL 114 (355)
T ss_pred cchHHHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHH
Confidence 34566666666543 2222 11236777788888888776655 9999999999754 22233322
Q ss_pred ----------cCCcEEEecCCCC
Q 032570 71 ----------SQILVIRVPLLSE 83 (138)
Q Consensus 71 ----------t~~PVIgvP~~~~ 83 (138)
..+|+|.||+..+
T Consensus 115 ~~~~~~~~~~~~~P~IaVPTTag 137 (355)
T TIGR03405 115 LRNGRDFAPTARLPLVAIPTTAG 137 (355)
T ss_pred HhcCCccCCCCCCCEEEEcCCCc
Confidence 2479999999753
No 93
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=87.04 E-value=7.4 Score=29.16 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
...+.+.+.++++|+. +.+......+++..+.+++..+++++.+|........+.--.+-....|||.+
T Consensus 16 ~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~~~~~~~~~ipvv~~ 84 (264)
T cd06267 16 ELLRGIEEAAREAGYS--VLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDELLEELAALGIPVVLV 84 (264)
T ss_pred HHHHHHHHHHHHcCCE--EEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHHHHHHHHcCCCEEEe
Confidence 3445666667788765 44556666788888888888888999999988877776611234567899986
No 94
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=87.04 E-value=2.3 Score=26.32 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHH
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 44 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~ 44 (138)
..=+.|+++++.|++.|++|+..=.+-+. +...++.+.
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~ 44 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKEL 44 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHH
Confidence 34478999999999999998776666553 444444443
No 95
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.84 E-value=4.5 Score=31.27 Aligned_cols=71 Identities=8% Similarity=0.139 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
.+.+.+.+.++++|..|++.+......+++..++++.+.+++++-+|............+.- ....|||.+
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 16 ALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQAAGIVVVAV 88 (271)
T ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHHHHCCCeEEEe
Confidence 45666778888888888888887788888888888888788899887765433322333332 345799987
No 96
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=86.80 E-value=3 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=27.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHH
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 43 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~ 43 (138)
.++=+.|.+++..|++.|++|+..-.. +.++...++.+
T Consensus 7 ~~~Cp~C~~ak~~L~~~~i~~~~i~i~--~~~~~~~~~~~ 44 (75)
T cd03418 7 KPNCPYCVRAKALLDKKGVDYEEIDVD--GDPALREEMIN 44 (75)
T ss_pred CCCChHHHHHHHHHHHCCCcEEEEECC--CCHHHHHHHHH
Confidence 455689999999999999999765443 44555555543
No 97
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=86.74 E-value=2.8 Score=37.25 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh----HHhh-------------
Q 032570 7 LPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS----GVAA------------- 68 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~-SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~----gvva------------- 68 (138)
++-.+.+.+.|++-||+|++.=- -.--+-..+.+-++.++++.++.||++.|+|+|=- ...|
T Consensus 84 ~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~Asn~~~eflDyvg~ 163 (465)
T KOG3857|consen 84 LGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLASNGEGEFLDYVGP 163 (465)
T ss_pred cccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHhhcCCCccchhccCC
Confidence 34567889999999999875210 02223334445555566778999999999998732 2222
Q ss_pred --------hccCCcEEEecCCCC
Q 032570 69 --------ANSQILVIRVPLLSE 83 (138)
Q Consensus 69 --------~~t~~PVIgvP~~~~ 83 (138)
++-.+|.|++|+.++
T Consensus 164 pigk~~~~s~p~lPLiAipTTaG 186 (465)
T KOG3857|consen 164 PIGKVKQSSKPLLPLIAIPTTAG 186 (465)
T ss_pred cccccccccccccceEecccCCC
Confidence 344689999999753
No 98
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=86.54 E-value=12 Score=28.40 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEec
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRVP 79 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgvP 79 (138)
....+.+.+.++++|+ ++.+......++...+++++....+++.||......... .+. -....|||.+=
T Consensus 15 ~~~~~~i~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~--~l~~~~~~~ipvV~~~ 85 (267)
T cd06283 15 SLVLKGIEDVCRAHGY--QVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNKE--LYQRLAKNGKPVVLVD 85 (267)
T ss_pred HHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCChH--HHHHHhcCCCCEEEEc
Confidence 4566778888889985 455555555677777888888777889777665433221 121 23467888763
No 99
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=86.50 E-value=13 Score=28.53 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
.....+.+.+.++++| |++.+......++...+++++...++++.+|........ ..+- ..-..|||.+
T Consensus 14 ~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~--~~~~~~~~~~ipvV~i 84 (270)
T cd06296 14 ASEVLRGVEEAAAAAG--YDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELTS--AQRAALRRTGIPFVVV 84 (270)
T ss_pred HHHHHHHHHHHHHHcC--CeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCCh--HHHHHHhcCCCCEEEE
Confidence 4566777888888888 466777778888778788888888889988876654322 2222 2345688875
No 100
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=86.12 E-value=9.3 Score=29.26 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
..+.+.+.+.++++|+ .+-+.+....+++..++++...+++++.+|...... ...++. -....||+.+
T Consensus 15 ~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 15 ARVIQAFQETLAAHGY--TLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH--SPALLDLLARRGVPYVAT 84 (268)
T ss_pred HHHHHHHHHHHHHCCC--EEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC--CHHHHHHHHhCCCCEEEE
Confidence 4566778888999985 555567777888888888888777888777654332 122222 2356898876
No 101
>PRK13059 putative lipid kinase; Reviewed
Probab=86.12 E-value=4.2 Score=33.44 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=47.0
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhcc----CCcEEE
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS----QILVIR 77 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t----~~PVIg 77 (138)
|+.++....+++.+.|++-|+++++....-+...+ ...++...+++++ +++|+.+.+--|+.+.. ..|+--
T Consensus 13 G~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~d~v-i~~GGDGTv~evv~gl~~~~~~~~lgv 87 (295)
T PRK13059 13 GENAIISELDKVIRIHQEKGYLVVPYRISLEYDLK----NAFKDIDESYKYI-LIAGGDGTVDNVVNAMKKLNIDLPIGI 87 (295)
T ss_pred cchhHHHHHHHHHHHHHHCCcEEEEEEccCcchHH----HHHHHhhcCCCEE-EEECCccHHHHHHHHHHhcCCCCcEEE
Confidence 33444566788888999999887764444332222 2333334566755 47788999988887764 355555
Q ss_pred ecCCC
Q 032570 78 VPLLS 82 (138)
Q Consensus 78 vP~~~ 82 (138)
+|.-+
T Consensus 88 iP~GT 92 (295)
T PRK13059 88 LPVGT 92 (295)
T ss_pred ECCCC
Confidence 56544
No 102
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=85.94 E-value=13 Score=28.23 Aligned_cols=69 Identities=17% Similarity=0.302 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
...+.+.+.++++|+ ++.+......+++..+.+++...++++.+|...-.+......+.- .-..|||.+
T Consensus 16 ~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 16 TLKDGAQKEAKELGY--ELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred HHHHHHHHHHHHcCc--eEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCcEEEE
Confidence 455677788888875 555665566788888888887777789777654332222233332 235688776
No 103
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=85.48 E-value=3.3 Score=37.08 Aligned_cols=52 Identities=12% Similarity=0.023 Sum_probs=45.2
Q ss_pred ccCCCchHHHHHHHHhhhcCC---eEEEEecCc-CCchhHHhhh--ccCCcEEEecCC
Q 032570 30 PPHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAAA--NSQILVIRVPLL 81 (138)
Q Consensus 30 SaHR~p~~~~~~~~~~~~~~~---~viIa~AG~-~a~L~gvva~--~t~~PVIgvP~~ 81 (138)
-.|++.+.+.++.+.+.+.++ +++|++.|+ ..-++|++|+ .--.|.|.||+.
T Consensus 215 e~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y~RGi~~i~vPTT 272 (488)
T PRK13951 215 EEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTT 272 (488)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHhcCCCeEecCcc
Confidence 379999999999998888888 899999888 5779999998 477899999996
No 104
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=85.42 E-value=6.5 Score=30.37 Aligned_cols=72 Identities=13% Similarity=0.242 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHh---CCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEec
Q 032570 8 PVMNDAARTLSDF---GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRVP 79 (138)
Q Consensus 8 ~~~~~~~~~L~~~---gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgvP 79 (138)
.+.+.+.+.++++ |.++++.+....-.+++..+.++++..++++.||........+...+. ..-..|||.+-
T Consensus 16 ~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~ 92 (272)
T cd06300 16 QMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFD 92 (272)
T ss_pred HHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEe
Confidence 3556666777888 887788887666678888888888877889988887765444443332 23567999874
No 105
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=85.36 E-value=15 Score=28.18 Aligned_cols=67 Identities=22% Similarity=0.196 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh-ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~-~t~~PVIgv 78 (138)
.+.+.+.+.++++|. ++-+...+-.+++..++++...+++++-+|........ ..+.. ....|||-+
T Consensus 16 ~~~~gi~~~~~~~gy--~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~--~~~~~~~~~iPvV~i 83 (265)
T cd06290 16 RILKGMERGLNGSGY--SPIIATGHWNQSRELEALELLKSRRVDALILLGGDLPE--EEILALAEEIPVLAV 83 (265)
T ss_pred HHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCh--HHHHHHhcCCCEEEE
Confidence 456677788888984 55566667888888889998888889988877543221 11211 235788865
No 106
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=85.15 E-value=2 Score=35.49 Aligned_cols=51 Identities=25% Similarity=0.289 Sum_probs=36.4
Q ss_pred cCCCchHHHHHHHHhhhcCC---eEEEEecCc-CCchhHHhhhc--cCCcEEEecCC
Q 032570 31 PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAAAN--SQILVIRVPLL 81 (138)
Q Consensus 31 aHR~p~~~~~~~~~~~~~~~---~viIa~AG~-~a~L~gvva~~--t~~PVIgvP~~ 81 (138)
-+|+.+.+.++.+.+.+.++ +++|++-|+ -.-|.|++|+. --.|.|-||+.
T Consensus 8 ~~Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~RGi~~i~vPTT 64 (260)
T PF01761_consen 8 ESKSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYMRGIPFIQVPTT 64 (260)
T ss_dssp GGSSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBTT--EEEEEE-S
T ss_pred ccCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHccCCceEecccc
Confidence 46888888888877644333 577777766 78899999985 47899999996
No 107
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=85.07 E-value=7.6 Score=30.08 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
..+.+.+.++++|. ++.+......++.-.++++.+.+++++.||....-...+.-.+.- .-..|||-+
T Consensus 17 ~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (282)
T cd06318 17 LTEAAKAHAKALGY--ELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV 86 (282)
T ss_pred HHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHCCCCEEEe
Confidence 45566777788885 566666777888888888888888999888765444433333332 245688755
No 108
>PRK11175 universal stress protein UspE; Provisional
Probab=84.92 E-value=7.9 Score=31.02 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHH--------hhhccCCcEEEecCC
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPLL 81 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gv--------va~~t~~PVIgvP~~ 81 (138)
+++.+.++..|++.+..+.--++..+. +.+.+++++++.||.++-+...+... +.-+++.||+-||..
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~g~~~~~---i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 72 REQAKPYLDAGIPIEIKVVWHNRPFEA---IIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred HHHHHHHhhcCCceEEEEecCCCcHHH---HHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccc
Confidence 333334445677777766522333333 44444567899999987655555544 346788999999974
No 109
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.88 E-value=16 Score=28.25 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhC---CCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEec
Q 032570 8 PVMNDAARTLSDFG---VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRVP 79 (138)
Q Consensus 8 ~~~~~~~~~L~~~g---i~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgvP 79 (138)
.+.+.+.+.++++| ..|++.+......++...++++++..++++.||....-...+...+. .....|||.+-
T Consensus 16 ~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~~d 92 (274)
T cd06311 16 GIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKAKKAGIFVVVVD 92 (274)
T ss_pred HHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCeEEEEc
Confidence 34455666666664 67888888887778877788888888889988887654444444443 24568998763
No 110
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=84.87 E-value=11 Score=28.77 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
...+.+.+.++++|. ++.+...++.+++..+++++..+.+++.+|...... . ...+.. ....|||.+
T Consensus 16 ~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~-~-~~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 16 RTVKGILAALYENGY--QMLLMNTNFSIEKEIEALELLARQKVDGIILLATTI-T-DEHREAIKKLNVPVVVV 84 (259)
T ss_pred HHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-C-HHHHHHHhcCCCCEEEE
Confidence 456667777888885 555666778899888888888888899888875432 1 122222 235788876
No 111
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=84.72 E-value=9.9 Score=29.16 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhcc--CCcEEEe
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS--QILVIRV 78 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t--~~PVIgv 78 (138)
..+.+.+.++++|+.+++. ....-.+++..+.++++.+++++.||...--...+...+.-.. ..|||.+
T Consensus 16 ~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 4566778888999866555 6788999999999999999999999988888877777776443 5799985
No 112
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=84.47 E-value=2.9 Score=27.58 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEE
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKIL 29 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~ 29 (138)
.+.=++|+++++.|+++|++|+..-.
T Consensus 15 ~~~Cp~C~~ak~~L~~~gi~y~~idi 40 (79)
T TIGR02190 15 KPGCPFCAKAKATLKEKGYDFEEIPL 40 (79)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEC
Confidence 45558999999999999999987544
No 113
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=83.65 E-value=8.3 Score=32.24 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhc--cCCcEEE-ecCCC
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIR-VPLLS 82 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~--t~~PVIg-vP~~~ 82 (138)
...+.+++.+.|++.|..+++++.... ....++++++...+++.+|+ +|+.+-+.-|+.++ +..|.+| +|.-+
T Consensus 18 ~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~via-~GGDGTv~evingl~~~~~~~LgilP~GT 93 (301)
T COG1597 18 AKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVIA-AGGDGTVNEVANGLAGTDDPPLGILPGGT 93 (301)
T ss_pred hhhHHHHHHHHHHhcCCeEEEEEeecC---ccHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHhcCCCCceEEecCCc
Confidence 456778899999999999999988654 67888888887778888776 57788888888875 5566344 44443
No 114
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=83.57 E-value=18 Score=27.80 Aligned_cols=70 Identities=10% Similarity=0.136 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcC---CchhHHhhh--ccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE---AHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~---a~L~gvva~--~t~~PVIgv 78 (138)
....+.+.+.++++|. ++-+...+..++.-.++++....++++-+|...... ..++..+.. ....|||.+
T Consensus 15 ~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 15 PAFAEAIEAALAQYGY--TVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEE
Confidence 3456777888888885 666777778888888888888888899777754321 133333432 356798876
No 115
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=83.29 E-value=18 Score=27.68 Aligned_cols=66 Identities=9% Similarity=0.110 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc--hhHHhhhccCCcEEEe
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH--LSGVAAANSQILVIRV 78 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~--L~gvva~~t~~PVIgv 78 (138)
..+.+.+.++++|. ++.+......+++..++++....++++.+|..+..... +--.. .-..||+.+
T Consensus 17 ~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~--~~~ipvV~~ 84 (264)
T cd06274 17 IAKRLEALARERGY--QLLIACSDDDPETERETVETLIARQVDALIVAGSLPPDDPYYLCQ--KAGLPVVAL 84 (264)
T ss_pred HHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchHHHHHHH--hcCCCEEEe
Confidence 34555566778776 45555556677888888888888889988887764332 22222 234688766
No 116
>PRK13057 putative lipid kinase; Reviewed
Probab=83.27 E-value=8.7 Score=31.28 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhc--cCCcEEEecCCCC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIRVPLLSE 83 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~--t~~PVIgvP~~~~ 83 (138)
...+++.+.|++.|++|++... +.+....+++++. .++++.|| ++|+.+.+--|+.+. +..|.--+|.-++
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t---~~~~~a~~~~~~~-~~~~d~ii-v~GGDGTv~~v~~~l~~~~~~lgiiP~GT~ 85 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPA---EDPDDLSEVIEAY-ADGVDLVI-VGGGDGTLNAAAPALVETGLPLGILPLGTA 85 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHH-HcCCCEEE-EECchHHHHHHHHHHhcCCCcEEEECCCCc
Confidence 4577888999999998766544 4456666666653 45577654 678899988888775 4566666666543
No 117
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=83.26 E-value=4 Score=28.49 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh--hhccCCcEEEecCCC-CCC
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANSQILVIRVPLLS-EDW 85 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv--a~~t~~PVIgvP~~~-~~~ 85 (138)
.++++.+.+++.|+++++.-+|. .++.++. +++++|+..--..-.+.-+- +.....||..+|+.. +.+
T Consensus 15 ~~~ki~~~~~~~~~~~~v~~~~~----~~~~~~~-----~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~ 85 (96)
T cd05564 15 LVKKMKKAAEKRGIDAEIEAVPE----SELEEYI-----DDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMM 85 (96)
T ss_pred HHHHHHHHHHHCCCceEEEEecH----HHHHHhc-----CCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcccC
Confidence 68999999999999998887776 4443332 45788888766666777776 356788999999874 334
Q ss_pred Cch
Q 032570 86 SED 88 (138)
Q Consensus 86 ~G~ 88 (138)
+|-
T Consensus 86 dg~ 88 (96)
T cd05564 86 NGE 88 (96)
T ss_pred CHH
Confidence 443
No 118
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=83.23 E-value=7.5 Score=31.33 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 10 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
.+.+.+.++++| |++.+.+..-.+++-.++++++..++++.||...-....+...+.- ....|||.+
T Consensus 17 ~~~i~~~a~~~g--~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~ 85 (302)
T TIGR02634 17 RDIFVAAAESLG--AKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAY 85 (302)
T ss_pred HHHHHHHHHhcC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEe
Confidence 345556666777 4677788888888888999999888899888876444444444432 245699876
No 119
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=83.03 E-value=6.9 Score=30.28 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEec
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRVP 79 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgvP 79 (138)
...+.+.+.+++.|+...+......+.++.-.+.++++.+++++.+|.....+..+...+.. .-..|||.+-
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (275)
T cd06320 16 SLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVN 89 (275)
T ss_pred HHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEEC
Confidence 34566777888888754444334456777777888888777899887765433333333332 3467998774
No 120
>PRK12361 hypothetical protein; Provisional
Probab=82.15 E-value=7.5 Score=34.82 Aligned_cols=77 Identities=21% Similarity=0.244 Sum_probs=50.3
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhc--cCCcEEEec
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIRVP 79 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~--t~~PVIgvP 79 (138)
|+.....+.+++.+.|++. +++++..... .....++++++.+++++++| ++|+.+.|..|+.+. +..|+--+|
T Consensus 254 G~g~~~~~~~~i~~~L~~~-~~~~v~~t~~---~~~a~~la~~~~~~~~d~Vi-v~GGDGTl~ev~~~l~~~~~~lgiiP 328 (547)
T PRK12361 254 GGGKWQEYGEQIQRELKAY-FDLTVKLTTP---EISAEALAKQARKAGADIVI-ACGGDGTVTEVASELVNTDITLGIIP 328 (547)
T ss_pred CCCcHHHHHHHHHHHHhcC-CceEEEECCC---CccHHHHHHHHHhcCCCEEE-EECCCcHHHHHHHHHhcCCCCEEEec
Confidence 4444567788888888874 5555554432 24456677766666777755 578899999999886 344544456
Q ss_pred CCCC
Q 032570 80 LLSE 83 (138)
Q Consensus 80 ~~~~ 83 (138)
.-++
T Consensus 329 ~GTg 332 (547)
T PRK12361 329 LGTA 332 (547)
T ss_pred CCch
Confidence 5543
No 121
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=82.03 E-value=6.5 Score=25.23 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 42 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~ 42 (138)
+.=+.|+++.+.|++.|++|+..=.. ..++...++.
T Consensus 9 ~~C~~C~ka~~~L~~~gi~~~~~di~--~~~~~~~el~ 44 (73)
T cd03027 9 LGCEDCTAVRLFLREKGLPYVEINID--IFPERKAELE 44 (73)
T ss_pred CCChhHHHHHHHHHHCCCceEEEECC--CCHHHHHHHH
Confidence 44578999999999999999876443 3344444443
No 122
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=81.90 E-value=24 Score=27.97 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEec
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRVP 79 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgvP 79 (138)
..+.+.+.+.++++|+... +...+..+++..+++++..+++++.+|........+...+.- ....|||.+-
T Consensus 42 ~~~~~~i~~~~~~~G~~~~--~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~ 114 (295)
T PRK10653 42 VSLKDGAQKEADKLGYNLV--VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLD 114 (295)
T ss_pred HHHHHHHHHHHHHcCCeEE--EecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCCEEEEc
Confidence 3456667788889996544 455677888888888888777889777765443333222222 2457888764
No 123
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=81.74 E-value=3.7 Score=26.27 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=22.3
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEc
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKILP 30 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V~S 30 (138)
|.+.=|.|.++++.|++.|++|+..-..
T Consensus 7 s~~~Cp~C~~ak~~L~~~~i~~~~~~v~ 34 (72)
T cd03029 7 TKPGCPFCARAKAALQENGISYEEIPLG 34 (72)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 3455689999999999999999765444
No 124
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=81.62 E-value=26 Score=28.20 Aligned_cols=68 Identities=9% Similarity=0.132 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
.+.+.+.+.+++.| |++-+...+..++...++++.+...+++.||....... ....+. .....|||-+
T Consensus 81 ~i~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~~l~~~~iPvV~~ 150 (342)
T PRK10014 81 ELTAGLTEALEAQG--RMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGS-SDDLREMAEEKGIPVVFA 150 (342)
T ss_pred HHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-cHHHHHHHhhcCCCEEEE
Confidence 44556677778888 46666666778888888888887778998887665432 223322 2345798876
No 125
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=81.15 E-value=7.4 Score=25.18 Aligned_cols=65 Identities=14% Similarity=-0.010 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCCC
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE 83 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~~ 83 (138)
.+.=|.|.++...|+++|++|+.+=.. ..++...++.+. .+..+.|+|-+ .+.
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~--~~~~~~~~~~~~-----------------------~g~~~vP~i~i--~g~ 58 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVD--GDPALRDEMMQR-----------------------SGRRTVPQIFI--GDV 58 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEec--CCHHHHHHHHHH-----------------------hCCCCcCEEEE--CCE
Confidence 455689999999999999998876443 445555554321 23566677642 344
Q ss_pred CCCchh-hhhhhc
Q 032570 84 DWSEDD-VINSIR 95 (138)
Q Consensus 84 ~~~G~d-LlS~lq 95 (138)
.++|.| +.++.+
T Consensus 59 ~igg~~~~~~~~~ 71 (79)
T TIGR02181 59 HVGGCDDLYALDR 71 (79)
T ss_pred EEcChHHHHHHHH
Confidence 567777 776654
No 126
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=81.13 E-value=16 Score=28.90 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
...+.+.+.++++|+ ++.+......+++..++++++..++++.||..+.-...+...+. ..-..|||.+
T Consensus 16 ~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 16 RDRPNFEAALKELGA--EVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHCCCCEEEE
Confidence 455677778888886 55666677788888888888888889988887644333333432 2346799876
No 127
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=80.78 E-value=22 Score=26.95 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
....+.+.+.++++|+. +.+...-..++...++++....++++.+|......... -.-.-....|||.+
T Consensus 15 ~~~~~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-~~~~~~~~ipvv~~ 83 (267)
T cd06284 15 SEILKGIEDEAREAGYG--VLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPPT-ALTALAKLPPIVQA 83 (267)
T ss_pred HHHHHHHHHHHHHcCCe--EEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCHH-HHHHHhcCCCEEEE
Confidence 45667788888899864 44555556677777888888888899777765442211 11122236799976
No 128
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=80.68 E-value=29 Score=28.14 Aligned_cols=49 Identities=8% Similarity=-0.033 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 58 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG 58 (138)
...+.+.+.+++.|. ++-+...+..+++..++++....++++-+|....
T Consensus 76 ~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 124 (343)
T PRK10727 76 AMVKAVEQVAYHTGN--FLLIGNGYHNEQKERQAIEQLIRHRCAALVVHAK 124 (343)
T ss_pred HHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 345667777888885 5666667777777778888777778887777654
No 129
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=80.28 E-value=9 Score=33.72 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=72.3
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEccC----CCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEE-
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILPPH----QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVI- 76 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~SaH----R~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVI- 76 (138)
|...|... .+.|++|.=.-+.+++-.| |.+.++.+.++.+.. +..|++.-+|++.+=.-...+||--..=
T Consensus 184 Gn~~d~~~----~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa~~a~~-~KPVv~~k~Grs~~g~~aa~sHtgalag~ 258 (447)
T TIGR02717 184 GNKADIDE----SDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAREISK-KKPIVVLKSGTSEAGAKAASSHTGALAGS 258 (447)
T ss_pred CchhhCCH----HHHHHHHhhCCCCCEEEEEecCCCCHHHHHHHHHHHcC-CCCEEEEecCCChhhhhhhhhccccccCh
Confidence 55566543 4566777665555555544 777888887776643 6789999999986433334455543220
Q ss_pred -----------EecCCCCCCC-chh---hhhhhcCCCCCeeeEEecCCchhHHHHHHHHHcc-------CCHHHHHHHHH
Q 032570 77 -----------RVPLLSEDWS-EDD---VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI-------ADEDLLERIRK 134 (138)
Q Consensus 77 -----------gvP~~~~~~~-G~d---LlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~~-------~~~~l~~kl~~ 134 (138)
|+..- .+++ -+| +|+....|.|-.+++|. |+-+.+.+++-.+.- -.++.++||++
T Consensus 259 ~~~~~a~~~~~Gv~~~-~~~~el~~~~~~l~~~~~~~g~rvaivs--~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~ 335 (447)
T TIGR02717 259 DEAYDAAFKQAGVIRA-DSIEELFDLARLLSNQPLPKGNRVAIIT--NAGGPGVIATDACEENGLELAELSEATKNKLRN 335 (447)
T ss_pred HHHHHHHHHHCCeEEe-CCHHHHHHHHHHHhcCCCCCCCeEEEEE--CCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHH
Confidence 11110 1111 122 44444456777799988 666666677655533 24556777775
Q ss_pred H
Q 032570 135 Y 135 (138)
Q Consensus 135 ~ 135 (138)
+
T Consensus 336 ~ 336 (447)
T TIGR02717 336 I 336 (447)
T ss_pred h
Confidence 4
No 130
>PRK11175 universal stress protein UspE; Provisional
Probab=80.16 E-value=7.4 Score=31.20 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCeE-EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHH--------hhhccCCcEEEecCCC
Q 032570 12 DAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPLLS 82 (138)
Q Consensus 12 ~~~~~L~~~gi~~~-~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gv--------va~~t~~PVIgvP~~~ 82 (138)
...+.++.+|++.+ ..+ .+..|. ..+.+..++.+++.+|.++-.-..+... +.-+.+.||+-||+.+
T Consensus 227 ~l~~~~~~~~~~~~~~~v--~~G~~~--~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 227 AMKALRQKFGIDEEQTHV--EEGLPE--EVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKPDG 302 (305)
T ss_pred HHHHHHHHhCCChhheee--ccCCHH--HHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcCCC
Confidence 34555567888753 333 344444 3455666677899999888433333333 3567889999998643
No 131
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=80.05 E-value=13 Score=29.05 Aligned_cols=69 Identities=13% Similarity=0.061 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
...+.+.+.++++| |++.+......+++..++++++..++++.+|..+.......-.+.- ....|||-+
T Consensus 16 ~~~~gi~~~~~~~G--~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 16 QGKQAADEAGKLLG--VDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred HHHHHHHHHHHHcC--CEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEe
Confidence 44556677777888 4666777777899999999988888899887765433333333322 346798876
No 132
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=80.04 E-value=28 Score=27.69 Aligned_cols=70 Identities=3% Similarity=-0.003 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC-chhHHhhhccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a-~L~gvva~~t~~PVIgv 78 (138)
....+.+.+.+++.|. ++.+......+++..++++...+++++-+|....... ...-.+......||+.+
T Consensus 72 ~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i 142 (327)
T PRK10423 72 SELVRGVERSCFERGY--SLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMM 142 (327)
T ss_pred HHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhhHHHHHhcCCCCEEEE
Confidence 3556777788888884 5666666667887778888787778897776543322 12222322235788776
No 133
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.80 E-value=24 Score=27.18 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=48.7
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
+.......+.+.+.++++|.. +-+......+++..+.++...+.+++-+|...+.... +..+. -.-..|||-+
T Consensus 11 ~~~~~~~~~~i~~~a~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~-~~~~~~~~~~~ipvV~i 85 (269)
T cd06281 11 NPLLAQLFSGAEDRLRAAGYS--LLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERD-PELVDALASLDLPIVLL 85 (269)
T ss_pred cccHHHHHHHHHHHHHHcCCE--EEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCc-HHHHHHHHhCCCCEEEE
Confidence 344556777888889998865 5555566778888888888887788988876654322 23322 2235788766
No 134
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=79.78 E-value=19 Score=29.09 Aligned_cols=67 Identities=10% Similarity=0.168 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--c-cCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N-SQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~-t~~PVIgv 78 (138)
.+.+.+.+.++++| |++.+...+..+++..++++....++++.||....... ...+.- . ...||+-+
T Consensus 76 ~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--~~~~~~l~~~~~iPvV~~ 145 (341)
T PRK10703 76 EIIEAVEKNCYQKG--YTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYP--EPLLAMLEEYRHIPMVVM 145 (341)
T ss_pred HHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCC--HHHHHHHHhcCCCCEEEE
Confidence 44566777788888 56777777888998888888888888998887665321 122222 2 46788865
No 135
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.65 E-value=23 Score=26.89 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh--hhccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv--a~~t~~PVIgv 78 (138)
.+.+.+.+.++++|. .+.+.+....+++..++++++.+++++.+|..+....... .+ +-.-..|||.+
T Consensus 16 ~~~~g~~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~~~~~~~~ipvV~~ 85 (268)
T cd06289 16 ELAAGLEEVLEEAGY--TVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPD-LLKRLAESGIPVVLV 85 (268)
T ss_pred HHHHHHHHHHHHcCC--eEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHH-HHHHHHhcCCCEEEE
Confidence 455667777888985 4555555667888888888888888998888775544444 32 22346788876
No 136
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=79.57 E-value=5.8 Score=30.23 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccC
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPH 32 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaH 32 (138)
..|.+++++.+|+.++|+|+.+=.|.|
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~~ 41 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSMD 41 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCCC
Confidence 789999999999999999998877776
No 137
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.41 E-value=26 Score=26.89 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
-....+.+.+.++++|+.+.+... ....+...++.+...+++++.||....... ..+- -....|||.+
T Consensus 17 ~~~~~~~i~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~~~~~---~~~~~l~~~~ipvV~~ 86 (268)
T cd06277 17 YSEIYRAIEEEAKKYGYNLILKFV--SDEDEEEFELPSFLEDGKVDGIILLGGIST---EYIKEIKELGIPFVLV 86 (268)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeC--CCChHHHHHHHHHHHHCCCCEEEEeCCCCh---HHHHHHhhcCCCEEEE
Confidence 345677788888999976555543 344455556666666678898887653322 2222 1235788875
No 138
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=79.39 E-value=15 Score=29.83 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCcCCHHHHHHHHHHHHHh-CCCeEEEEEccCCCchH---------------------------------HHHHHHHhhh
Q 032570 2 ESDLDLPVMNDAARTLSDF-GVPYEIKILPPHQNCKE---------------------------------ALSYALSAKE 47 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~-gi~~~~~V~SaHR~p~~---------------------------------~~~~~~~~~~ 47 (138)
|+-+|.-.+....+.|++- +++..+-+.+-|+.+.. ..++.+...+
T Consensus 7 gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 86 (363)
T cd03786 7 GTRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLE 86 (363)
T ss_pred ecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666654 56666666666655442 2222333344
Q ss_pred cCCeEEEEecCcCCchhHHhhh-ccCCcEEEec
Q 032570 48 RGIKIIIVGDGVEAHLSGVAAA-NSQILVIRVP 79 (138)
Q Consensus 48 ~~~~viIa~AG~~a~L~gvva~-~t~~PVIgvP 79 (138)
..++++++.......+++.+++ ....||+.+.
T Consensus 87 ~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~ 119 (363)
T cd03786 87 EKPDLVLVLGDTNETLAAALAAFKLGIPVAHVE 119 (363)
T ss_pred hCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEe
Confidence 5789998885456677766665 5788999864
No 139
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.32 E-value=26 Score=26.75 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHH-hhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEec
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS-AKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRVP 79 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~-~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgvP 79 (138)
...+.+.+.++++|.. +.+..... +++..+.+.+ ..+..++.+|..+...+ ...+. .....||+.+=
T Consensus 21 ~~~~~~~~~~~~~g~~--~~~~~~~~-~~~~~~~~~~~~~~~~~dgiii~~~~~~--~~~~~~~~~~~ipvV~~~ 90 (270)
T cd06294 21 EVLRGISAVANENGYD--ISLATGKN-EEELLEEVKKMIQQKRVDGFILLYSRED--DPIIDYLKEEKFPFVVIG 90 (270)
T ss_pred HHHHHHHHHHHHCCCE--EEEecCCC-cHHHHHHHHHHHHHcCcCEEEEecCcCC--cHHHHHHHhcCCCEEEEC
Confidence 4567778888888854 55555553 4444444433 34556888777764332 12232 23457888763
No 140
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=79.03 E-value=14 Score=29.31 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=46.5
Q ss_pred HHHhCCCeEEEEEccC----CCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 17 LSDFGVPYEIKILPPH----QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 17 L~~~gi~~~~~V~SaH----R~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
+++||+.. +.+.+.. =+|+++.++.+..+++++++|+.=.+.+..+.-.+|-.+..||+-+.+.
T Consensus 164 ~~~~gl~~-~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 164 AKRYGLKV-IGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHTT-EE-EEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHhcCCce-eeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 45677663 3333221 4788999999999999999999999999999999999999999877776
No 141
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=78.65 E-value=28 Score=26.81 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh---HHhh--hccCCcEEEe
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS---GVAA--ANSQILVIRV 78 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~---gvva--~~t~~PVIgv 78 (138)
...+.+.+.+.++++|+.. -+...-..+++-.+.+++....+++.+|.....+.... ..+. -....|||.+
T Consensus 14 ~~~~~~gi~~~~~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 14 FPSIIRGIESVLSEKGYSL--LLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFI 89 (273)
T ss_pred HHHHHHHHHHHHHHcCCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEE
Confidence 4567778888899998654 45555677887788888887788998887665432211 2222 2345799876
No 142
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=78.63 E-value=25 Score=28.63 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc----hhHH--hhhcc-CCcEEEe
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSGV--AAANS-QILVIRV 78 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~----L~gv--va~~t-~~PVIgv 78 (138)
|.+.+.++.+.+++.++|..+++- ++-....+.++.+..++.|++.+.+=.+..+. +--+ +.-.+ .+||||
T Consensus 119 dp~~l~~iv~av~~~~~PVsvKiR-~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg- 196 (231)
T TIGR00736 119 NKELLKEFLTKMKELNKPIFVKIR-GNCIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG- 196 (231)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEeC-CCCCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE-
Confidence 888899999999888999888876 44455677788888888888877664444432 2111 22233 488988
Q ss_pred cCCCCCCCchhhhhhhcC-CCCCeeeE
Q 032570 79 PLLSEDWSEDDVINSIRM-PSHVQVAS 104 (138)
Q Consensus 79 P~~~~~~~G~dLlS~lqm-P~Gvpvat 104 (138)
.++-.+..|..-|+.. ..||.|++
T Consensus 197 --NGgI~s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 197 --NNSIDDIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred --ECCcCCHHHHHHHHHhCCCeEEEcH
Confidence 2332334445555553 44444443
No 143
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=78.60 E-value=8.5 Score=24.72 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHH
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 41 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~ 41 (138)
.=+.|+++.+.|++.|++|+.+=. .+.++...++
T Consensus 8 ~Cp~C~~ak~~L~~~~i~~~~~di--~~~~~~~~~~ 41 (72)
T TIGR02194 8 NCVQCKMTKKALEEHGIAFEEINI--DEQPEAIDYV 41 (72)
T ss_pred CCHHHHHHHHHHHHCCCceEEEEC--CCCHHHHHHH
Confidence 348999999999999999876533 3445444443
No 144
>PRK10116 universal stress protein UspC; Provisional
Probab=78.49 E-value=20 Score=25.14 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh------hhccCCcEEEecCCC
Q 032570 18 SDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA------AANSQILVIRVPLLS 82 (138)
Q Consensus 18 ~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv------a~~t~~PVIgvP~~~ 82 (138)
+..|++.+..+. .+..|. ..+.+..++.+++.+|...-...+|..+. .-++..||+-||..+
T Consensus 74 ~~~~~~~~~~~~-~~G~~~--~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 74 QDADYPIEKTFI-AYGELS--EHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLTG 141 (142)
T ss_pred HhcCCCeEEEEE-ecCCHH--HHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 456666542222 333333 45666667778999888766555555543 346899999999754
No 145
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=78.24 E-value=5.7 Score=33.79 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=35.0
Q ss_pred CchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh-hccCCcEEEecCCC
Q 032570 34 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-ANSQILVIRVPLLS 82 (138)
Q Consensus 34 ~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva-~~t~~PVIgvP~~~ 82 (138)
.++...+.+++.++.+++.+|++-|- ..+.+.-. +...+||||+|-.-
T Consensus 77 ~~~~~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~~i~vigiPkTI 125 (317)
T cd00763 77 DEEGQAKAIEQLKKHGIDALVVIGGD-GSYMGAMRLTEHGFPCVGLPGTI 125 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCc-hHHHHHHHHHHcCCCEEEecccc
Confidence 45667788888999999999998774 44444422 33469999999863
No 146
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=78.11 E-value=19 Score=27.59 Aligned_cols=69 Identities=12% Similarity=0.025 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
...+.+.+.++++|+ ++.+......+++..++++....++++.+|....-.......+. -....|||.+
T Consensus 17 ~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 17 TYNKAFQAAAEEDGV--EVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHHHHHHHhcCC--EEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHCCCcEEEe
Confidence 344566677778885 55566667788888888887777789988776654332223332 2356788765
No 147
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=77.88 E-value=8 Score=31.30 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=47.4
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEccCCC-chHHHHHHHHhhhcCCeEEEEecCcCC-chhHHh
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEA-HLSGVA 67 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~-p~~~~~~~~~~~~~~~~viIa~AG~~a-~L~gvv 67 (138)
+.||...++++.+..++.|....+.+.-++|. |+.+.++++...+-|++.| .++=..+ ..|--+
T Consensus 107 ~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i-~l~DT~G~~~P~~v 172 (263)
T cd07943 107 HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV-YVTDSAGAMLPDDV 172 (263)
T ss_pred chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE-EEcCCCCCcCHHHH
Confidence 56888899999999999999888887666664 7888888888887788865 4444433 334433
No 148
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=77.11 E-value=14 Score=32.34 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHhhhc---CCeEEEEecCc-CCchhHHhhh--ccCCcEEEec
Q 032570 9 VMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKER---GIKIIIVGDGV-EAHLSGVAAA--NSQILVIRVP 79 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~S---aHR~p~~~~~~~~~~~~~---~~~viIa~AG~-~a~L~gvva~--~t~~PVIgvP 79 (138)
+.++....|+..|+..+..+.. .+|+.+.+.++.+..-.. .-+.+|++-|+ -+-|+|++|+ +--.+.|.||
T Consensus 48 y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~Aaty~RGv~fiqiP 127 (360)
T COG0337 48 YLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAAATYMRGVRFIQIP 127 (360)
T ss_pred HHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEecc
Confidence 5788899999999988767766 577877777766555332 23577777666 7889999998 5789999999
Q ss_pred CCC-----CCCCc---------hhhhhhhcCCCCCeeeEEecC---------CchhHHHHH-HHHHccCCHHHHHHHHHH
Q 032570 80 LLS-----EDWSE---------DDVINSIRMPSHVQVASVPRN---------NAKNAALYA-VKVLGIADEDLLERIRKY 135 (138)
Q Consensus 80 ~~~-----~~~~G---------~dLlS~lqmP~GvpvatV~I~---------~~~nAA~~A-aqIl~~~~~~l~~kl~~~ 135 (138)
+.- ++.+| -.|....-.|.. |.|| .-..+++.= .+.--+.|+++++.|++.
T Consensus 128 TTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~a-----Vi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~~f~~Le~~ 202 (360)
T COG0337 128 TTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKA-----VLIDTDFLKTLPPRELRAGMAEVIKYGLIADPEFFDWLEEN 202 (360)
T ss_pred chHHHHhhcccccccccCCCCCcceeecccCCcE-----EEEchHHhccCCHHHHHHhHHHHHHHhhhcCHHHHHHHHHH
Confidence 961 12222 225555555654 3334 334455442 455556799998888775
No 149
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=76.90 E-value=36 Score=27.17 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCc-CCchhHHhhhccCCcEEEe
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~-~a~L~gvva~~t~~PVIgv 78 (138)
+.+.+.+.+++.| |++.+...+..+++..++++...+++++-+|..... ...+--.+ .....||+-+
T Consensus 77 l~~~i~~~~~~~g--~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l-~~~~iPvV~~ 144 (329)
T TIGR01481 77 LARGIEDIATMYK--YNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGTITEKLREEF-SRSPVPVVLA 144 (329)
T ss_pred HHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHH-HhcCCCEEEE
Confidence 3455566677776 466777777788888888877777788877765322 21111122 2346788865
No 150
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=76.70 E-value=19 Score=27.66 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
...+.+.+.++++|+.+.+ ...-..++...+++++...++++.||...+........+.- .-..|||.+
T Consensus 16 ~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 16 AYLAGTKAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred HHHHHHHHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEe
Confidence 3456677788899876554 44445677777888877777899999987755544454432 345788876
No 151
>PRK03202 6-phosphofructokinase; Provisional
Probab=76.70 E-value=5 Score=34.16 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=35.6
Q ss_pred CchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCC
Q 032570 34 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 34 ~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
.++...+.+++.++.+++.+|++-|-...-....=+....|||++|-.-
T Consensus 78 ~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTI 126 (320)
T PRK03202 78 DEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTI 126 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEecccc
Confidence 5567888889999999999999877543323222234589999999863
No 152
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=76.49 E-value=22 Score=27.50 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
..+.+.+.+.++++|+ ++.+......++.-.++++.+..++++-+|............+. -....|||.+
T Consensus 15 ~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 15 TAETKSIKDAAEKRGF--DLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILV 86 (273)
T ss_pred HHHHHHHHHHHHhcCC--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEE
Confidence 3466777888888886 55556666677777788888888889988876544443333332 2346788876
No 153
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=76.31 E-value=3.5 Score=28.95 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEecCCC
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRVPLLS 82 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgvP~~~ 82 (138)
|-+ .++++.+.+++.|+++++.-++.. ++.+.. .++++|+...-..-.+.-+-. .....||.-+|+..
T Consensus 16 SS~-l~~k~~~~~~~~gi~~~v~a~~~~----~~~~~~-----~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 16 TSL-LVNKMNKAAEEYGVPVKIAAGSYG----AAGEKL-----DDADVVLLAPQVAYMLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred HHH-HHHHHHHHHHHCCCcEEEEEecHH----HHHhhc-----CCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeChhh
Confidence 334 779999999999999998877763 343332 347888887666666666553 23456999888763
No 154
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=76.13 E-value=11 Score=26.15 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIK 27 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~ 27 (138)
+.=|+|.++++.|+++|++|+..
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~ 47 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYV 47 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEE
Confidence 34578899999999999998743
No 155
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=76.01 E-value=6.2 Score=29.68 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=23.1
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 61 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a 61 (138)
..|...|+....+.++++ .+|++|++.|...
T Consensus 53 atV~~~~~~t~~l~~~v~-----~ADIVvsAtg~~~ 83 (140)
T cd05212 53 ATVYSCDWKTIQLQSKVH-----DADVVVVGSPKPE 83 (140)
T ss_pred CEEEEeCCCCcCHHHHHh-----hCCEEEEecCCCC
Confidence 566677877766777653 5799999999884
No 156
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.81 E-value=21 Score=27.32 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEec
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRVP 79 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgvP 79 (138)
.+.+.+.+.+++.|+. +.+......+++-.+.+++..+++++.+|...-........+.- ....|||.+-
T Consensus 16 ~~~~~i~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~ 87 (267)
T cd06322 16 ELANAMKEEAKKQKVN--LIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITVD 87 (267)
T ss_pred HHHHHHHHHHHhcCCE--EEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEEc
Confidence 4556777778888864 44444556777778888888778899888764333323333322 2457998874
No 157
>PRK09982 universal stress protein UspD; Provisional
Probab=75.70 E-value=19 Score=25.90 Aligned_cols=44 Identities=7% Similarity=0.178 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCeEEEEecCcCCchhHHh------hhccCCcEEEecCCC
Q 032570 38 ALSYALSAKERGIKIIIVGDGVEAHLSGVA------AANSQILVIRVPLLS 82 (138)
Q Consensus 38 ~~~~~~~~~~~~~~viIa~AG~~a~L~gvv------a~~t~~PVIgvP~~~ 82 (138)
...+++.+++.+++.||.+.++ ..+..++ .-++..||+-||+.+
T Consensus 92 ~~~I~~~A~~~~aDLIVmG~~~-~~~~~~~~va~~V~~~s~~pVLvv~~~~ 141 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCGHHH-SFINRLMPAYRGMINKMSADLLIVPFID 141 (142)
T ss_pred HHHHHHHHHHcCCCEEEEeCCh-hHHHHHHHHHHHHHhcCCCCEEEecCCC
Confidence 4445566677899999999884 4454443 236899999999864
No 158
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=75.28 E-value=7 Score=33.06 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=34.7
Q ss_pred CchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh--hhccCCcEEEecCCC
Q 032570 34 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANSQILVIRVPLLS 82 (138)
Q Consensus 34 ~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv--a~~t~~PVIgvP~~~ 82 (138)
.++...+.+++.++.+++.+|++-|-. .+.+.. +-....||||+|-.-
T Consensus 76 ~~~~~~~~~~~l~~~~Id~Li~IGGdg-s~~~a~~L~e~~~i~vigiPkTI 125 (301)
T TIGR02482 76 TEEGRQKAVENLKKLGIEGLVVIGGDG-SYTGAQKLYEEGGIPVIGLPGTI 125 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCch-HHHHHHHHHHhhCCCEEeecccc
Confidence 456677888999999999999887764 444332 222579999999863
No 159
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=74.94 E-value=5.8 Score=25.03 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 42 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~ 42 (138)
+.++++...|++.|++|+..........+...++.
T Consensus 10 ~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~ 44 (74)
T cd03045 10 PPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFL 44 (74)
T ss_pred CcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHH
Confidence 56889999999999999988776544433334444
No 160
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=74.89 E-value=25 Score=24.27 Aligned_cols=72 Identities=22% Similarity=0.256 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhCCCe-EEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh--------HHhhhccCCcEEE
Q 032570 7 LPVMNDAARTLSDFGVPY-EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS--------GVAAANSQILVIR 77 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~-~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~--------gvva~~t~~PVIg 77 (138)
....+++.+.++..|++. +..+..-.-.++.+.++.+ .++++.++..+-+-..|. .-+..+++.||+-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~---~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlv 149 (154)
T COG0589 73 EELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAE---EEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLV 149 (154)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHH---HhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEE
Confidence 456777788888999985 6666555444466666654 347898888884333333 3344578889988
Q ss_pred ecCC
Q 032570 78 VPLL 81 (138)
Q Consensus 78 vP~~ 81 (138)
||..
T Consensus 150 v~~~ 153 (154)
T COG0589 150 VRSE 153 (154)
T ss_pred EccC
Confidence 8764
No 161
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=74.73 E-value=28 Score=28.05 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC---chhHHhhhc-cCCcEEE
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA---HLSGVAAAN-SQILVIR 77 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a---~L~gvva~~-t~~PVIg 77 (138)
|.+.+.++.+.+++.++|..+++-.-+- +...++++..++.|++.|-+-++..+ .+ -.+.-. +.+|||+
T Consensus 124 ~p~~l~eiv~avr~~~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~-~~I~~i~~~ipVIg 196 (233)
T cd02911 124 DPERLSEFIKALKETGVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVDAMDPGNHADL-KKIRDISTELFIIG 196 (233)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEECcCCCCCCCcH-HHHHHhcCCCEEEE
Confidence 6777888888888889998888875442 56677777777788897655443332 11 112212 5678876
No 162
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=74.22 E-value=2 Score=25.62 Aligned_cols=20 Identities=35% Similarity=0.738 Sum_probs=17.2
Q ss_pred HHHHHHccCCHHHHHHHHHH
Q 032570 116 YAVKVLGIADEDLLERIRKY 135 (138)
Q Consensus 116 ~AaqIl~~~~~~l~~kl~~~ 135 (138)
-||+.|+++...|+.|+++|
T Consensus 23 ~aA~~Lgisr~tL~~klkk~ 42 (42)
T PF02954_consen 23 KAARLLGISRRTLYRKLKKY 42 (42)
T ss_dssp HHHHHHTS-HHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHhC
Confidence 57899999999999999976
No 163
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.12 E-value=24 Score=27.06 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
.+.+.+.+.++++|+ ++.+...-..+++-.+.+++....+++.+|..+..+......+. .....|||.+
T Consensus 16 ~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~ 86 (277)
T cd06319 16 IMGRGVKSKAKALGY--DAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIA 86 (277)
T ss_pred HHHHHHHHHHHhcCC--eEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEE
Confidence 345666677788885 55566656677777777777767789988765544333333332 2346788865
No 164
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=74.08 E-value=51 Score=27.54 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEec
Q 032570 10 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRVP 79 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgvP 79 (138)
.+-+.+.++++|+...+. ...+-.+++-.++++++..++++.||...--..+|..++-- ....|||.+=
T Consensus 42 ~~Gi~~aa~~~G~~v~~~-~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d 112 (336)
T PRK15408 42 GNGAKEAGKELGVDVTYD-GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWD 112 (336)
T ss_pred HHHHHHHHHHhCCEEEEE-CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeC
Confidence 344566777899655432 33444556666788888888999988877666777777643 3467999863
No 165
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=74.02 E-value=8 Score=31.91 Aligned_cols=67 Identities=22% Similarity=0.194 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCeEE--EEEccCCC------chHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh-ccCCcEEEe
Q 032570 11 NDAARTLSDFGVPYEI--KILPPHQN------CKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRV 78 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~--~V~SaHR~------p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~-~t~~PVIgv 78 (138)
+...++++.|++++++ .+-+ |.. ...+.++.+..++..++++++-.=....|++.+++ ....||+.+
T Consensus 41 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 41 EMLDQVLDLFHLPPDYDLNIMS-PGQTLGEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHhcCCCCCeeeecCC-CCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 4556677779997554 4433 321 22233444445566799999985567778777765 478899865
No 166
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=73.94 E-value=39 Score=26.10 Aligned_cols=69 Identities=10% Similarity=0.090 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh-ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~S-aHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~-~t~~PVIgv 78 (138)
.+.+.+.+.++++|+ ++.+.. -...++...+++++...++++-+|............+.- ....|||.+
T Consensus 15 ~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~~ipvV~~ 85 (271)
T cd06314 15 IAEAGVKAAGKELGV--DVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAAGIKLITT 85 (271)
T ss_pred HHHHHHHHHHHHcCC--eEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHhcCCCEEEe
Confidence 456667777888885 455554 334777788888888888899888775433322233221 127788876
No 167
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=73.90 E-value=23 Score=31.67 Aligned_cols=65 Identities=11% Similarity=-0.051 Sum_probs=44.9
Q ss_pred CcCCHHHHH-HHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhcc
Q 032570 3 SDLDLPVMN-DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 71 (138)
Q Consensus 3 S~SD~~~~~-~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t 71 (138)
..+...+.+ ++...|++.|++|++.+.- .+....++++++...+++.||+ .|+.+-|--|+-|+-
T Consensus 124 kg~a~k~~~~~v~~~L~~~gi~~~v~~T~---~~ghA~~la~~~~~~~~D~VV~-vGGDGTlnEVvNGL~ 189 (481)
T PLN02958 124 KKSASKIFFDVVKPLLEDADIQLTIQETK---YQLHAKEVVRTMDLSKYDGIVC-VSGDGILVEVVNGLL 189 (481)
T ss_pred CcchhHHHHHHHHHHHHHcCCeEEEEecc---CccHHHHHHHHhhhcCCCEEEE-EcCCCHHHHHHHHHh
Confidence 334445544 5777999999998877664 2356667777765566786664 677888888887764
No 168
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=73.75 E-value=15 Score=24.85 Aligned_cols=63 Identities=10% Similarity=-0.048 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCCCCC
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW 85 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~~~~ 85 (138)
-=|.|.++++.|+++|++|+..=...+ ++ ..+.+.+ ..+..+.|+|= ..+..+
T Consensus 22 ~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~-~~~~l~~----------------------~~g~~tvP~vf--i~g~~i 74 (90)
T cd03028 22 RCGFSRKVVQILNQLGVDFGTFDILED--EE-VRQGLKE----------------------YSNWPTFPQLY--VNGELV 74 (90)
T ss_pred CCcHHHHHHHHHHHcCCCeEEEEcCCC--HH-HHHHHHH----------------------HhCCCCCCEEE--ECCEEE
Confidence 446888999999999999986655443 32 3232221 12456677774 344456
Q ss_pred Cchh-hhhhhc
Q 032570 86 SEDD-VINSIR 95 (138)
Q Consensus 86 ~G~d-LlS~lq 95 (138)
+|.| |....+
T Consensus 75 GG~~~l~~l~~ 85 (90)
T cd03028 75 GGCDIVKEMHE 85 (90)
T ss_pred eCHHHHHHHHH
Confidence 7777 766543
No 169
>PRK10329 glutaredoxin-like protein; Provisional
Probab=73.69 E-value=12 Score=25.09 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHH
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 41 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~ 41 (138)
++=+.|+.+++.|++.||+|+..=. .+.++...++
T Consensus 9 ~~Cp~C~~ak~~L~~~gI~~~~idi--~~~~~~~~~~ 43 (81)
T PRK10329 9 NDCVQCHATKRAMESRGFDFEMINV--DRVPEAAETL 43 (81)
T ss_pred CCCHhHHHHHHHHHHCCCceEEEEC--CCCHHHHHHH
Confidence 4448999999999999999875533 3445444443
No 170
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=73.60 E-value=26 Score=24.70 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 64 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~ 64 (138)
+++.+.++..|++++..+.-- ..| ...+++.+++.+++.||.++-.-..|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~g-~~~--~~~I~~~a~~~~~dlIV~Gs~g~~~l~ 118 (146)
T cd01989 68 LPYRCFCSRKGVQCEDVVLED-DDV--AKAIVEYVADHGITKLVMGASSDNHFS 118 (146)
T ss_pred HHHHHHHhhcCCeEEEEEEeC-CcH--HHHHHHHHHHcCCCEEEEeccCCCcee
Confidence 334444555677777666521 122 344556666677888877765555443
No 171
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=73.56 E-value=7.4 Score=24.38 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccC
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPH 32 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaH 32 (138)
..-+.++++...|++.|++|+.+.....
T Consensus 7 ~~~~~~~~v~~~l~~~gi~~~~~~v~~~ 34 (73)
T cd03059 7 PDDVYSHRVRIVLAEKGVSVEIIDVDPD 34 (73)
T ss_pred CCChhHHHHHHHHHHcCCccEEEEcCCC
Confidence 3457899999999999999998766543
No 172
>PRK12757 cell division protein FtsN; Provisional
Probab=73.07 E-value=18 Score=30.31 Aligned_cols=59 Identities=19% Similarity=0.099 Sum_probs=46.3
Q ss_pred CCCcCCHHHHHHHHHHHHHhCCCeEE-------EE-EccCCCchHHHHHHHHhhhcCC-eEEEEecCc
Q 032570 1 MESDLDLPVMNDAARTLSDFGVPYEI-------KI-LPPHQNCKEALSYALSAKERGI-KIIIVGDGV 59 (138)
Q Consensus 1 mGS~SD~~~~~~~~~~L~~~gi~~~~-------~V-~SaHR~p~~~~~~~~~~~~~~~-~viIa~AG~ 59 (138)
.||.+|..-++....-|...|++..+ || ++...+.++..++.+..+..|+ .+||+.+|+
T Consensus 189 VGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~iiva~gg 256 (256)
T PRK12757 189 CGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKGAGHSGCIPLAAGG 256 (256)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEEeccCC
Confidence 48999999999999999988886432 22 4567788889998888877776 588877764
No 173
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=73.01 E-value=46 Score=26.55 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
+.+.+.+.+++.|. ++-+...+..++...++++.....+++-+|........- ..+. .....||+-+
T Consensus 79 l~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-~~~~~l~~~~iPvV~v 147 (328)
T PRK11303 79 IAKYLERQARQRGY--QLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEH-PFYQRLQNDGLPIIAL 147 (328)
T ss_pred HHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCh-HHHHHHHhcCCCEEEE
Confidence 44556667778875 455555677777777888877777889777754432111 1221 2346788865
No 174
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=72.97 E-value=16 Score=26.05 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCC------cEEEecCCCC
Q 032570 10 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI------LVIRVPLLSE 83 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~------PVIgvP~~~~ 83 (138)
.+++...|+..+..+++..... .+...++.+....+...-.|++.|+.+.|.-++.+.... |+--+|.-+
T Consensus 17 ~~~v~~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~GT- 92 (130)
T PF00781_consen 17 WKKVEPALRAAGIDYEVIETES---AGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPAGT- 92 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEESS---TTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-SS-
T ss_pred HHHHHHHHHHcCCceEEEEEec---cchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecCCC-
Confidence 3788899999999888877755 344444443222333334455667788888888775433 444455433
Q ss_pred CCCchhhhhhhcCCC
Q 032570 84 DWSEDDVINSIRMPS 98 (138)
Q Consensus 84 ~~~G~dLlS~lqmP~ 98 (138)
|-|+--++..|.
T Consensus 93 ---~N~~ar~lg~~~ 104 (130)
T PF00781_consen 93 ---GNDFARSLGIPS 104 (130)
T ss_dssp ---S-HHHHHTT--S
T ss_pred ---hhHHHHHcCCCC
Confidence 334555555553
No 175
>PRK10638 glutaredoxin 3; Provisional
Probab=72.83 E-value=14 Score=24.31 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=41.7
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCC
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
+.+.=++|+++.+.|++.|++|+..=.. ..++...++.+ ..+..+.|+|=+ .+
T Consensus 8 ~~~~Cp~C~~a~~~L~~~gi~y~~~dv~--~~~~~~~~l~~-----------------------~~g~~~vP~i~~--~g 60 (83)
T PRK10638 8 TKATCPFCHRAKALLNSKGVSFQEIPID--GDAAKREEMIK-----------------------RSGRTTVPQIFI--DA 60 (83)
T ss_pred ECCCChhHHHHHHHHHHcCCCcEEEECC--CCHHHHHHHHH-----------------------HhCCCCcCEEEE--CC
Confidence 3455689999999999999999875443 23333333322 124567788754 34
Q ss_pred CCCCchh-hhhhh
Q 032570 83 EDWSEDD-VINSI 94 (138)
Q Consensus 83 ~~~~G~d-LlS~l 94 (138)
..++|.| |...-
T Consensus 61 ~~igG~~~~~~~~ 73 (83)
T PRK10638 61 QHIGGCDDLYALD 73 (83)
T ss_pred EEEeCHHHHHHHH
Confidence 4577777 66543
No 176
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.77 E-value=41 Score=25.82 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCc--CCchhHHhhhccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV--EAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~--~a~L~gvva~~t~~PVIgv 78 (138)
..+.+.+.+.++++|. ++.+..-...++...++++.+.+.+++-+|...-. ...+.-.. ....|||-+
T Consensus 15 ~~~~~gi~~~~~~~gy--~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~--~~~~pvV~i 84 (269)
T cd06293 15 AELADAVEEEADARGL--SLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNRPDDGALAKLI--NSYGNIVLV 84 (269)
T ss_pred HHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHH--hcCCCEEEE
Confidence 3567788888899985 55555444577878888888888889987775422 12222223 235687765
No 177
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=72.68 E-value=7.6 Score=29.96 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=30.2
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
..|...|...+.+.++.+ .+|++|+++|..+-+.+-.= .-..-||-|-+.
T Consensus 61 atVt~~h~~T~~l~~~~~-----~ADIVVsa~G~~~~i~~~~i-k~gavVIDvG~~ 110 (160)
T PF02882_consen 61 ATVTICHSKTKNLQEITR-----RADIVVSAVGKPNLIKADWI-KPGAVVIDVGIN 110 (160)
T ss_dssp -EEEEE-TTSSSHHHHHT-----TSSEEEE-SSSTT-B-GGGS--TTEEEEE--CE
T ss_pred CeEEeccCCCCcccceee-----eccEEeeeeccccccccccc-cCCcEEEecCCc
Confidence 467778888888888774 58999999999887765421 223347766554
No 178
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.51 E-value=41 Score=25.74 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEec
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRVP 79 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgvP 79 (138)
....+.+.+.++++|.. +.+......+++..++++...+.+++-+|...-.... . .+. -....||+-+=
T Consensus 15 ~~~~~gi~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~-~-~~~~~~~~~iPvv~~~ 85 (265)
T cd06285 15 ATMYEGIEEAAAERGYS--TFVANTGDNPDAQRRAIEMLLDRRVDGLILGDARSDD-H-FLDELTRRGVPFVLVL 85 (265)
T ss_pred HHHHHHHHHHHHHCCCE--EEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCh-H-HHHHHHHcCCCEEEEc
Confidence 34566778888888865 4455667788888888888888889977765322222 1 222 22457887653
No 179
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=72.18 E-value=42 Score=25.73 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEec
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRVP 79 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgvP 79 (138)
.+.+.+.+.++++|+.+. +...+..++.-.++++.+.+++++.||..+-.. -.+ .+.- ....||+-+-
T Consensus 16 ~~~~g~~~~a~~~g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~~-~~~-~~~~~~~~~ipvV~~~ 85 (268)
T cd06270 16 PLLSGVESVARKAGKHLI--ITAGHHSAEKEREAIEFLLERRCDALILHSKAL-SDD-ELIELAAQVPPLVLIN 85 (268)
T ss_pred HHHHHHHHHHHHCCCEEE--EEeCCCchHHHHHHHHHHHHcCCCEEEEecCCC-CHH-HHHHHhhCCCCEEEEe
Confidence 556777888889987655 444455677777888888888899888865321 111 1222 2346777663
No 180
>PRK09230 cytosine deaminase; Provisional
Probab=72.17 E-value=39 Score=29.30 Aligned_cols=100 Identities=11% Similarity=0.094 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchH--HHHHHHHhhhcC--CeEEEEecCcCCc-----hhHHhh--hccCCcE
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKE--ALSYALSAKERG--IKIIIVGDGVEAH-----LSGVAA--ANSQILV 75 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~--~~~~~~~~~~~~--~~viIa~AG~~a~-----L~gvva--~~t~~PV 75 (138)
.+.++++.+..+++|++.++++.-. ..+.+ ....++..+..+ .+++++=+-.-.. .+-.+. .....+|
T Consensus 194 ~e~l~~~~~~A~~~g~~~~~H~~E~-~~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~v 272 (426)
T PRK09230 194 VESLHKAFALAQKYDRLIDVHCDEI-DDEQSRFVETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINF 272 (426)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCC-CCcchHHHHHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeE
Confidence 4678899999999999999998743 33222 222333333333 3454442222211 112222 3457789
Q ss_pred EEecCCCCCC----------Cchh-hhhhhcCCCCCeeeEEecCCc
Q 032570 76 IRVPLLSEDW----------SEDD-VINSIRMPSHVQVASVPRNNA 110 (138)
Q Consensus 76 IgvP~~~~~~----------~G~d-LlS~lqmP~GvpvatV~I~~~ 110 (138)
+.||.++-.+ .|+. +--++. .|++|+ ++-||.
T Consensus 273 v~cP~sn~~l~~~~~~~p~~~g~~pi~~l~~--aGv~V~-lGTD~~ 315 (426)
T PRK09230 273 VANPLVNIHLQGRFDTYPKRRGITRVKEMLE--AGINVC-FGHDDV 315 (426)
T ss_pred EECcchhhhhcCCCCCCCCCCCCcCHHHHHH--CCCeEE-EecCCC
Confidence 9999986433 4555 666665 799986 455654
No 181
>PRK09864 putative peptidase; Provisional
Probab=71.90 E-value=44 Score=28.95 Aligned_cols=38 Identities=3% Similarity=0.090 Sum_probs=31.4
Q ss_pred CeeeEEecCCchhHHHHHHHHHccCCHHHHHHHHHHHh
Q 032570 100 VQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVE 137 (138)
Q Consensus 100 vpvatV~I~~~~nAA~~AaqIl~~~~~~l~~kl~~~~~ 137 (138)
.|+.++.+++-+|+.-+..+++..-+++-.+.+.+||+
T Consensus 317 s~~e~~~~~D~e~~~~Ll~~~~~~l~~~~~~~~~~~~~ 354 (356)
T PRK09864 317 ANSGMISKADYDALLTLIRDFLTTLTAEKVNAFSQFRQ 354 (356)
T ss_pred CcceEeEHHHHHHHHHHHHHHHHhcchhhHHHHhhhhc
Confidence 45778888999999999999887777777778888875
No 182
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=71.66 E-value=41 Score=25.80 Aligned_cols=68 Identities=19% Similarity=0.153 Sum_probs=46.1
Q ss_pred HHHHHHHHHHH-hCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 9 VMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 9 ~~~~~~~~L~~-~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
+.+.+.+.+++ .| |++.+...-..++...+.+++..+.+++.+|..........-.+.- ....|||.+
T Consensus 17 ~~~gi~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 17 LRNAMKEHAKVLGG--VELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred HHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHCCCeEEEe
Confidence 34456666667 65 4666666666788888888888777899888766554445555553 456799976
No 183
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=71.58 E-value=22 Score=30.34 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCC-chHHHHHHHHhhhcCCeEEEEecCcCCchhHHh
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 67 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~-p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv 67 (138)
.+|.+..++..+..++.|....+.+.-+||. |+.+.++++.+++-|++.|-.+-=.-..+|--+
T Consensus 111 ~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v 175 (337)
T PRK08195 111 CTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDV 175 (337)
T ss_pred cchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHH
Confidence 4677788999999999999988888889987 578888888888888887655544444555544
No 184
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=71.47 E-value=26 Score=27.19 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
..+.+.+.++++|. ++.+.... .+++..+.+++...++++.||...-.....+..+-. ....|||.+
T Consensus 17 ~~~gi~~~~~~~g~--~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 17 EWKFAKKAAKEKGF--TVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred HHHHHHHHHHHcCC--EEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHhCCCeEEEe
Confidence 45566778888885 55566665 677777778888778899888765433233433332 356799876
No 185
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=71.13 E-value=15 Score=26.44 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 47 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~ 47 (138)
.-+.+-..+.++++|+.|+....+..-+.+++.+.+++..+
T Consensus 44 ~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 44 ISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45778888999999999999999999999999999988854
No 186
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=70.95 E-value=13 Score=29.68 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCc-CCchhHHhh--------hccCCcEEEecC
Q 032570 10 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAA--------ANSQILVIRVPL 80 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~-~a~L~gvva--------~~t~~PVIgvP~ 80 (138)
.+|+.+.-+..|.+.|+.. +||+.++.+.+.+..++.|++.+.....- +..+||.=. |.-.--|+=||.
T Consensus 20 p~eiveLa~~~~A~iEVNL--FyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~~v~~~GIy~ADVVLVPL 97 (178)
T PF02006_consen 20 PEEIVELAKATGAKIEVNL--FYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGLDHERAKVSKEGIYSADVVLVPL 97 (178)
T ss_pred hHHHHHHHHHhCCCEEEEc--ccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCCccceECcccceeccEEEecc
Confidence 4677777788888777665 79999999999999999999866655222 345666532 344566888999
Q ss_pred CCCC
Q 032570 81 LSED 84 (138)
Q Consensus 81 ~~~~ 84 (138)
..++
T Consensus 98 EDGD 101 (178)
T PF02006_consen 98 EDGD 101 (178)
T ss_pred CCCc
Confidence 7654
No 187
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.52 E-value=11 Score=31.74 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEecC
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRVPL 80 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgvP~ 80 (138)
...+.++++.+.|++.|+.+.+.....+..+ ..++. ....+.++++|++ |+.+.+-.++-. ....||+++.+
T Consensus 16 ~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~--~~~~~-~~~~~~~d~vi~~-GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 16 QAKEAAERCAKQLEARGCKVLMGPSGPKDNP--YPVFL-ASASELIDLAIVL-GGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecCchhhcc--ccchh-hccccCcCEEEEE-CCcHHHHHHHHHhccCCCCEEEEec
Confidence 3456788888888899987666544333222 11221 1122357777776 667666666544 35889999888
No 188
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=70.32 E-value=7.4 Score=33.24 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=33.3
Q ss_pred CchHHHHHHHHhhhcCCeEEEEecCcCCchhH-Hhhh-----ccCCcEEEecCC
Q 032570 34 NCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA-----NSQILVIRVPLL 81 (138)
Q Consensus 34 ~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~g-vva~-----~t~~PVIgvP~~ 81 (138)
.++...+.+++.++.+++.+|++-|-...-.. .++- +...|||++|-.
T Consensus 77 ~~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkT 130 (338)
T cd00363 77 TEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGT 130 (338)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeec
Confidence 34567778888888899988888776444332 2221 237999999975
No 189
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=70.12 E-value=18 Score=25.83 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEecCC
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRVPLL 81 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgvP~~ 81 (138)
--.+++..+.+++-|+++++.-+|. .++.++. +++++|+...-..-.+.-+-. .....||.-+|+.
T Consensus 14 s~la~km~~~a~~~gi~~~i~a~~~----~e~~~~~-----~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~ 81 (99)
T cd05565 14 GLLANALNKGAKERGVPLEAAAGAY----GSHYDMI-----PDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGK 81 (99)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeeH----HHHHHhc-----cCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHH
Confidence 3468999999999999999887765 4444433 357888887777777776653 3445788877764
No 190
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=69.92 E-value=28 Score=29.69 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCc-hHHHHHHHHhhhcCCeEEEEecCcCCchhHHh
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNC-KEALSYALSAKERGIKIIIVGDGVEAHLSGVA 67 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p-~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv 67 (138)
.+|.+..++..+..+++|......+.-+||.+ +++.++++.+++-|++.|-.+-=.-..+|--+
T Consensus 110 ~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v 174 (333)
T TIGR03217 110 CTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDV 174 (333)
T ss_pred cchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHH
Confidence 46777889999999999998888888888765 77888888888888887655544444555444
No 191
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.72 E-value=28 Score=27.30 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCch-hHHhh-hccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL-SGVAA-ANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L-~gvva-~~t~~PVIgv 78 (138)
.+.+.+.+.++++| |++-+......+++..++++++..+.++.||......... +.+-. ..-..|||-+
T Consensus 17 ~~~~gi~~~a~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~~~iPvV~~ 87 (280)
T cd06315 17 GVGEGVREAAKAIG--WNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQKAGIPVVGW 87 (280)
T ss_pred HHHHHHHHHHHHcC--cEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 45667777888888 5666666667888888899888888899888865432322 33222 2346788765
No 192
>PRK09492 treR trehalose repressor; Provisional
Probab=69.51 E-value=55 Score=25.95 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEec
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 57 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~A 57 (138)
...++.+.+.+++.|. ++-+......+++..++++....++++-+|...
T Consensus 78 ~~~~~~i~~~~~~~gy--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 126 (315)
T PRK09492 78 NQAVRTMLPAFYEQGY--DPIIMESQFSPEKVNEHLGVLKRRNVDGVILFG 126 (315)
T ss_pred HHHHHHHHHHHHHcCC--eEEEEecCCChHHHHHHHHHHHhcCCCEEEEeC
Confidence 3566777888888884 566666677788877888877777888777653
No 193
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=69.44 E-value=35 Score=27.12 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcc--CCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh-ccCCcEEEe
Q 032570 9 VMNDAARTLSDFGVPYEIKILPP--HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRV 78 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~Sa--HR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~-~t~~PVIgv 78 (138)
..+.+.+.++++|. ++.+.+. +..+++..++++.+.+++++.||..+.....+...+.. ....||+-+
T Consensus 17 ~~~gi~~~a~~~g~--~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~~iPvV~~ 87 (295)
T TIGR02955 17 INYGMVEQAKHLGV--ELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQLTKSIPVFAL 87 (295)
T ss_pred HHHHHHHHHHHhCC--EEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHHhcCCCEEEE
Confidence 34556677778876 4455544 34667777888888888899888765433332333322 236788753
No 194
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=69.13 E-value=16 Score=24.76 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecC
Q 032570 10 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 58 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG 58 (138)
.|=++.+++.||+. .+|-.|-+.....+.++++..+ +|..+.|+.-|
T Consensus 22 Ge~ia~~~~~~G~~-~iRGSs~rgg~~Alr~~~~~lk-~G~~~~itpDG 68 (74)
T PF04028_consen 22 GELIARVLERFGFR-TIRGSSSRGGARALREMLRALK-EGYSIAITPDG 68 (74)
T ss_pred HHHHHHHHHHcCCC-eEEeCCCCcHHHHHHHHHHHHH-CCCeEEEeCCC
Confidence 45567888999997 6788877777788888888776 67888888766
No 195
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=68.97 E-value=13 Score=29.19 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCC---CchHHHHHHHHhhhcCCeEEEE
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQ---NCKEALSYALSAKERGIKIIIV 55 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR---~p~~~~~~~~~~~~~~~~viIa 55 (138)
+++.+.++.+.+++.|+++.+.+..+.| +++.+.++++.+.+-|++.|..
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 6778888888999999999999977775 7888888888888778775543
No 196
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=68.92 E-value=31 Score=27.47 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~-SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
.+.+.+.+.++++|+ ++.+. .....++...+++++..+.+++-||..+.....+...+. -....|||-+
T Consensus 16 ~i~~gi~~~a~~~g~--~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v 87 (298)
T cd06302 16 RMEEGAKEAAKELGV--DAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREAGIKVVTH 87 (298)
T ss_pred HHHHHHHHHHHHhCC--eEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEE
Confidence 455677788888886 55554 455678888888888877789988887544332333332 2346788875
No 197
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=68.91 E-value=17 Score=23.56 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEc
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILP 30 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~S 30 (138)
.-+.+.++...|++.|++|++.-.+
T Consensus 9 ~sp~~~kv~~~L~~~gi~y~~~~v~ 33 (77)
T cd03041 9 GSPFCRLVREVLTELELDVILYPCP 33 (77)
T ss_pred CCchHHHHHHHHHHcCCcEEEEECC
Confidence 3478999999999999999986544
No 198
>PHA03050 glutaredoxin; Provisional
Probab=68.45 E-value=21 Score=25.50 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=41.4
Q ss_pred CcCCHHHHHHHHHHHHHhCC---CeEEEEEcc-CCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 3 SDLDLPVMNDAARTLSDFGV---PYEIKILPP-HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi---~~~~~V~Sa-HR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
|.+.=|+|.++++.|+++|+ +|++.=... |..++ ..+.+++ +.+.++.|.|=+
T Consensus 19 s~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~-~~~~l~~----------------------~tG~~tVP~IfI 75 (108)
T PHA03050 19 VKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENE-LRDYFEQ----------------------ITGGRTVPRIFF 75 (108)
T ss_pred ECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHH-HHHHHHH----------------------HcCCCCcCEEEE
Confidence 45667999999999999999 564433332 22333 3333221 125677888854
Q ss_pred cCCCCCCCchh-hhhhhc
Q 032570 79 PLLSEDWSEDD-VINSIR 95 (138)
Q Consensus 79 P~~~~~~~G~d-LlS~lq 95 (138)
- +..++|.| |...-+
T Consensus 76 ~--g~~iGG~ddl~~l~~ 91 (108)
T PHA03050 76 G--KTSIGGYSDLLEIDN 91 (108)
T ss_pred C--CEEEeChHHHHHHHH
Confidence 3 44467777 776554
No 199
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=68.21 E-value=70 Score=26.69 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEec-CcCCchhHHhhhccCCcEEEecCCCCCC
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD-GVEAHLSGVAAANSQILVIRVPLLSEDW 85 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~A-G~~a~L~gvva~~t~~PVIgvP~~~~~~ 85 (138)
.++++.+.+.|++.|. ++-++..+..+++..++++....++++=+|... .....+--.+.. ...|++-+=.....
T Consensus 74 ~~i~~gi~~~~~~~gy--~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~~P~V~i~~~~~~- 149 (333)
T COG1609 74 AEILKGIEEAAREAGY--SLLLANTDDDPEKEREYLETLLQKRVDGLILLGERPNDSLLELLAA-AGIPVVVIDRSPPG- 149 (333)
T ss_pred HHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHh-cCCCEEEEeCCCcc-
Confidence 3566777777888875 788888888999999999999888888666655 333334444443 37787765432211
Q ss_pred CchhhhhhhcCCCCCeeeEEecCCchhHHHHHHHHHccC------------CHHHHHHHHHHHh
Q 032570 86 SEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIA------------DEDLLERIRKYVE 137 (138)
Q Consensus 86 ~G~dLlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~~~------------~~~l~~kl~~~~~ 137 (138)
.. +..|.+||-..+-.++-.++... ...-++|++.|++
T Consensus 150 ------------~~--~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~ 199 (333)
T COG1609 150 ------------LG--VPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRA 199 (333)
T ss_pred ------------CC--CCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHH
Confidence 12 33367676665555444444442 2234677777764
No 200
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=68.20 E-value=27 Score=27.90 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCC---------------------CchHHHHHHHHhhhcCCeEEE
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQ---------------------NCKEALSYALSAKERGIKIII 54 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR---------------------~p~~~~~~~~~~~~~~~~viI 54 (138)
..|.+..+++++.+..+++. .+.+...|+ +++.+.++.+-+++.|.++.|
T Consensus 141 nd~~e~i~~ia~~l~~l~~~-~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 141 TLSRENMQQALDVLIPLGIK-QIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CCCHHHHHHHHHHHHHcCCc-eEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 34677888999999988876 788888886 233444455555667888876
No 201
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=68.13 E-value=15 Score=21.63 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCch
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCK 36 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~ 36 (138)
-+.++++...|+..|++|+...........
T Consensus 9 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 38 (71)
T cd00570 9 SPRSLRVRLALEEKGLPYELVPVDLGEGEQ 38 (71)
T ss_pred CccHHHHHHHHHHcCCCcEEEEeCCCCCCC
Confidence 378999999999999999987776544433
No 202
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=68.04 E-value=9.8 Score=33.03 Aligned_cols=49 Identities=22% Similarity=0.185 Sum_probs=37.0
Q ss_pred CCchHHHHHHHHhhhcCCeEEEEecCc-CCchhHHhhhccCCcEEEecCC
Q 032570 33 QNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 33 R~p~~~~~~~~~~~~~~~~viIa~AG~-~a~L~gvva~~t~~PVIgvP~~ 81 (138)
|+++-..+.++++++.+++.+|++-|- |..=+-.++-.-.+||||+|=.
T Consensus 78 ~~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkT 127 (347)
T COG0205 78 KTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKT 127 (347)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCC
Confidence 344555667788899999988888775 5555666776777999999975
No 203
>PRK13761 hypothetical protein; Provisional
Probab=67.86 E-value=14 Score=30.75 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--------hccCCcEEEecCC
Q 032570 10 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--------ANSQILVIRVPLL 81 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--------~~t~~PVIgvP~~ 81 (138)
.+++.+.-+..|.+.|+.. +|||.++...+.+.+++.|++.+...-- ...+|+.=. |.-.--|+=||..
T Consensus 83 p~eiveLa~~~~A~iEVNL--F~RT~eR~~~I~~~l~~~Ga~~vlG~~~-~~~ip~L~~~R~~v~~~GIy~ADVVLVPLE 159 (248)
T PRK13761 83 PEEIVELAEALNAKLEVNL--FYRTEERVEKIAEVLREHGAKEVLGTDE-DARIPGLDHERAKVSEDGIYSADVVLVPLE 159 (248)
T ss_pred hHHHHHHHHHhCCCEEEEe--ccCCHHHHHHHHHHHHHcCCceeeCCCC-cCcCCCCCCccceECcccceeccEEEecCC
Confidence 3566777778888766655 7999999999999999999986554432 566666532 3445568889997
Q ss_pred CCC
Q 032570 82 SED 84 (138)
Q Consensus 82 ~~~ 84 (138)
.++
T Consensus 160 DGD 162 (248)
T PRK13761 160 DGD 162 (248)
T ss_pred CCc
Confidence 654
No 204
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=67.51 E-value=35 Score=28.11 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
+.+-+.+.++++|. ++.+++....++...+++++..+++++.+|........+.-.+. .....|||-+
T Consensus 43 ~~~gi~~~a~~~g~--~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 43 DRDIFVKKAESLGA--KVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred HHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCeEEEE
Confidence 44556677778884 66677888888888899998888889988876543333222222 2345798877
No 205
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=67.33 E-value=43 Score=25.35 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=45.7
Q ss_pred HHHHHHHHHHH----hCCCeEEEEEccCCCchHHHHHHHHhhhc-CCeEEEEecCcCCc--hhHHhhhccCCcEEEecCC
Q 032570 9 VMNDAARTLSD----FGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEAH--LSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 9 ~~~~~~~~L~~----~gi~~~~~V~SaHR~p~~~~~~~~~~~~~-~~~viIa~AG~~a~--L~gvva~~t~~PVIgvP~~ 81 (138)
.++-+.+.+++ .|.++++.+...+-.|++..+.+++..++ ++++||........ +.. ++.....|+|..-..
T Consensus 22 ~~~~a~~~~n~~~g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~~~~~~~~~-~~~~~~iP~i~~~~~ 100 (299)
T cd04509 22 GAQLAVEEINAKGGIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSGVALAVAP-VAEALKIPLISPGAT 100 (299)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCcHHHHHHHH-HHhhCCceEEeccCC
Confidence 34444444443 35677888888877888888888877665 78887765443222 222 234467899986543
No 206
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=66.55 E-value=48 Score=25.52 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 8 PVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~-gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
...+.+.+.+++. |+ ++.+......++.-.++++++..++++.||........+...+. .....||+.+
T Consensus 16 ~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~ 87 (270)
T cd06308 16 AMNDEIQREASNYPDV--ELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRAGIPVILL 87 (270)
T ss_pred HHHHHHHHHHHhcCCc--EEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHCCCCEEEe
Confidence 3455666666765 54 55566667788888888888888889988877544333333333 2346788876
No 207
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=66.55 E-value=13 Score=23.45 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccC
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPH 32 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaH 32 (138)
..-+.+.++...|++.|++||..-....
T Consensus 7 ~~~p~~~rv~~~L~~~gl~~e~~~v~~~ 34 (71)
T cd03060 7 RRCPYAMRARMALLLAGITVELREVELK 34 (71)
T ss_pred CCCcHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 3457889999999999999987665544
No 208
>PRK15005 universal stress protein F; Provisional
Probab=66.30 E-value=42 Score=23.47 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=32.7
Q ss_pred HHHHhCCC---eEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHH--------hhhccCCcEEEec
Q 032570 16 TLSDFGVP---YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVP 79 (138)
Q Consensus 16 ~L~~~gi~---~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gv--------va~~t~~PVIgvP 79 (138)
.+++++.+ ++..+. +-.|. ..+++.+++.+++.||.++.+. .+... +.-+++.||.-||
T Consensus 75 ~~~~~~~~~~~~~~~v~--~G~p~--~~I~~~a~~~~~DLIV~Gs~~~-~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 75 IIKKFKLPTDRVHVHVE--EGSPK--DRILELAKKIPADMIIIASHRP-DITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred HHHHhCCCCCceEEEEe--CCCHH--HHHHHHHHHcCCCEEEEeCCCC-CchheeecchHHHHHHhCCCCEEEeC
Confidence 33445543 444443 44443 4566666777899888876543 33332 2235677777654
No 209
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=66.07 E-value=39 Score=27.75 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=48.0
Q ss_pred HHHhCCCeEEEEE-c--cCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 17 LSDFGVPYEIKIL-P--PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 17 L~~~gi~~~~~V~-S--aHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
+++||++.---+. + .=-+|+.+.++++..++.++++|+.-...+.-+.-.++..+..+|+-+
T Consensus 193 ~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l 257 (286)
T cd01019 193 EKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAKVGEL 257 (286)
T ss_pred HHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCceEEEe
Confidence 4578887432121 2 224678888999989899999999999999999999998888888766
No 210
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.02 E-value=11 Score=31.93 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCCe-------------------------EEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh
Q 032570 10 MNDAARTLSDFGVPY-------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 64 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~-------------------------~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~ 64 (138)
.+-+.+.|+++|++. ...|...|..++.+.++.+ .++++|++.|...-+.
T Consensus 143 p~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~-----~ADIvIsAvGk~~~i~ 217 (284)
T PRK14177 143 PYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVR-----QADIIVGAVGKPEFIK 217 (284)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHh-----hCCEEEEeCCCcCccC
Confidence 355667788888754 3567778977777877764 4799999999988765
Q ss_pred HHhhhccCCcEEEecCC
Q 032570 65 GVAAANSQILVIRVPLL 81 (138)
Q Consensus 65 gvva~~t~~PVIgvP~~ 81 (138)
+=.--.- .=||-|=+.
T Consensus 218 ~~~ik~g-avVIDvGin 233 (284)
T PRK14177 218 ADWISEG-AVLLDAGYN 233 (284)
T ss_pred HHHcCCC-CEEEEecCc
Confidence 4332211 127776664
No 211
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=65.95 E-value=43 Score=27.01 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhc--cCCcEEEecC
Q 032570 12 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIRVPL 80 (138)
Q Consensus 12 ~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~--t~~PVIgvP~ 80 (138)
.+.+..+++|....+.....+..+.+-.+.++++..++++.||....-+..+...+.-- .-.|||.+=.
T Consensus 54 g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~ 124 (322)
T COG1879 54 GAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDS 124 (322)
T ss_pred HHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEec
Confidence 35666778898777888888888888888888888889999999999999999988643 4469997543
No 212
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=65.43 E-value=47 Score=26.71 Aligned_cols=71 Identities=17% Similarity=0.029 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHh-------CCCeEEEEEccCCCchHHHHHHHHhhhc-CCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 8 PVMNDAARTLSDF-------GVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~-------gi~~~~~V~SaHR~p~~~~~~~~~~~~~-~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
+..+-+...+++. |.++++.+..-+-.|++..+.++++.++ ++.+||...+......--+......|+|.+
T Consensus 18 ~~~~g~~~a~~~~N~~Ggi~G~~i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig~~~s~~~~~~~~~~~~~ip~v~~ 96 (341)
T cd06341 18 GARAGADAAAGYANAAGGIAGRPIEYVWCDDQGDPASAAACARDLVEDDKVVAVVGGSSGAGGSALPYLAGAGIPVIGG 96 (341)
T ss_pred HHHHHHHHHHHHHHhcCCcCCceEEEEEecCCCChhHHHHHHHHHHHhcCceEEEecccccchhHHHHHhhcCCceecC
Confidence 3444455555665 5678899998888999999998888665 788888765443322212334567788864
No 213
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=65.28 E-value=13 Score=33.48 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=38.8
Q ss_pred EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHH-hhh-----ccCCcEEEecCCC
Q 032570 28 ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV-AAA-----NSQILVIRVPLLS 82 (138)
Q Consensus 28 V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gv-va~-----~t~~PVIgvP~~~ 82 (138)
+.+--|.+....+++++.++.+++.+|++-|-...-... ++- ...+||||+|-.-
T Consensus 155 iLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTI 215 (459)
T PTZ00286 155 ILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTI 215 (459)
T ss_pred eeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 345568888888999999999999998887754433222 221 2458999999763
No 214
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=65.21 E-value=38 Score=26.49 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCc-CCchhHHhhhccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~-~a~L~gvva~~t~~PVIgv 78 (138)
.+.+.+.+.++++|+. +.+.... .++...+++++..+++++.||...-. +..+-..+......|++-+
T Consensus 19 ~~~~gi~~~~~~~gy~--~~i~~~~-~~~~~~~~i~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~PiV~i 87 (265)
T cd06354 19 SAWEGLERAAKELGIE--YKYVESK-SDADYEPNLEQLADAGYDLIVGVGFLLADALKEVAKQYPDQKFAII 87 (265)
T ss_pred HHHHHHHHHHHHcCCe--EEEEecC-CHHHHHHHHHHHHhCCCCEEEEcCcchHHHHHHHHHHCCCCEEEEE
Confidence 3456667788888864 5555444 46666778888888889988876422 2223233322225677654
No 215
>PRK14071 6-phosphofructokinase; Provisional
Probab=64.93 E-value=10 Score=32.73 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=33.3
Q ss_pred chHHHHHHHHhhhcCCeEEEEecCcCCchhHH--hhhccCCcEEEecCCC
Q 032570 35 CKEALSYALSAKERGIKIIIVGDGVEAHLSGV--AAANSQILVIRVPLLS 82 (138)
Q Consensus 35 p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gv--va~~t~~PVIgvP~~~ 82 (138)
++...+.+++.++.+++.+|++-|-.. +.+. ++=...+|||+||-.-
T Consensus 93 ~~~~~~~~~~l~~~~Id~Li~IGGdgS-~~~a~~L~~~~~i~vIgiPkTI 141 (360)
T PRK14071 93 RDRSQEIIDGYHSLGLDALIGIGGDGS-LAILRRLAQQGGINLVGIPKTI 141 (360)
T ss_pred hHHHHHHHHHHHHcCCCEEEEECChhH-HHHHHHHHHhcCCcEEEecccc
Confidence 345677888888999999999877644 3332 2212379999999863
No 216
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=64.92 E-value=60 Score=24.74 Aligned_cols=67 Identities=10% Similarity=0.154 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
..+.+.+.+.++++|... .+...-..+++-.++++.+...+++.+|.... ...+- -+-....|||.+
T Consensus 15 ~~~~~gi~~~~~~~g~~~--~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~-~~~~~--~~~~~gipvv~~ 81 (265)
T cd06291 15 SELARAVEKELYKKGYKL--ILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH-NLGIE--EYENIDLPIVSF 81 (265)
T ss_pred HHHHHHHHHHHHHCCCeE--EEecCCccHHHHHHHHHHHHHcCCCEEEEecC-CcCHH--HHhcCCCCEEEE
Confidence 345667778888998654 44444456677778888888888998887653 33332 112345688765
No 217
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=64.88 E-value=12 Score=30.94 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=42.0
Q ss_pred HHHHHHHhCCCe--------EEEEEccCCCchHHHHHH-----HHhhhcCCeE-EEEecCcCCchhHHhhhccCCcEEE
Q 032570 13 AARTLSDFGVPY--------EIKILPPHQNCKEALSYA-----LSAKERGIKI-IIVGDGVEAHLSGVAAANSQILVIR 77 (138)
Q Consensus 13 ~~~~L~~~gi~~--------~~~V~SaHR~p~~~~~~~-----~~~~~~~~~v-iIa~AG~~a~L~gvva~~t~~PVIg 77 (138)
..+.++.||+.- ++-|...|..|++.+..+ +..+++|.++ ++.+|||++ |.-.+.-.+..|||.
T Consensus 125 l~~lv~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~-la~~Lq~~~gvPVID 202 (230)
T COG4126 125 LEELVRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSD-LADQLQKAFGVPVID 202 (230)
T ss_pred HHHHHHhcCccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHHH-HHHHHHHHhCCCccc
Confidence 345567788752 456777888777776644 3334568885 556777764 577777777777773
No 218
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=64.76 E-value=12 Score=33.44 Aligned_cols=54 Identities=24% Similarity=0.280 Sum_probs=39.1
Q ss_pred EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh--hh-----ccCCcEEEecCCC
Q 032570 28 ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AA-----NSQILVIRVPLLS 82 (138)
Q Consensus 28 V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv--a~-----~t~~PVIgvP~~~ 82 (138)
+.+--|.++...+++++.++.+++.+|++-|-. .+-+.. +- ...+||||+|-.-
T Consensus 151 iLGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdg-T~~gA~~l~ee~~~~g~~I~VIGIPKTI 211 (443)
T PRK06830 151 ILGSSRGPQDPEEIVDTLERMNINILFVIGGDG-TLRGASAIAEEIERRGLKISVIGIPKTI 211 (443)
T ss_pred cccCCCCchhHHHHHHHHHHcCCCEEEEeCCch-HHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 455568888899999999999999998886653 333332 11 2458999999863
No 219
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=63.80 E-value=16 Score=31.07 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCC
Q 032570 36 KEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 36 ~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
+...+.+++.++.+++.+|++-|-...-..-.=+...+|||+||-.-
T Consensus 81 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTI 127 (324)
T TIGR02483 81 DGDDKIVANLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTI 127 (324)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeecccc
Confidence 56777888888889998888877544322212123459999999874
No 220
>PLN02884 6-phosphofructokinase
Probab=63.66 E-value=13 Score=32.96 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=35.2
Q ss_pred cCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh-hc------cCCcEEEecCC
Q 032570 31 PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-AN------SQILVIRVPLL 81 (138)
Q Consensus 31 aHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva-~~------t~~PVIgvP~~ 81 (138)
--|......+++++.++.+++.+|++-|-.. +.+.-. +. ..+||||||-.
T Consensus 125 tsR~~~~~~~i~~~L~~~~Id~LivIGGdgS-~~~a~~L~~~~~~~g~~i~vIGIPkT 181 (411)
T PLN02884 125 VSRGGAKTSDIVDSIEARGINMLFVLGGNGT-HAGANAIHNECRKRKMKVSVVGVPKT 181 (411)
T ss_pred cCCCCccHHHHHHHHHHcCCCEEEEECCchH-HHHHHHHHHHHHHcCCCceEEecccc
Confidence 3366667788888899999999998866543 333321 11 45999999976
No 221
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.32 E-value=11 Score=31.74 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh
Q 032570 10 MNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 64 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~-------------------------~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~ 64 (138)
.+-+.+.|+++|++.+ ..|...|+.++.+.++.+ .++++|++.|...-+.
T Consensus 142 p~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k-----~ADIvIsAvGkp~~i~ 216 (282)
T PRK14180 142 PKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTT-----KADILIVAVGKPNFIT 216 (282)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhh-----hcCEEEEccCCcCcCC
Confidence 4556777888877632 477888998888888764 4799999999988876
Q ss_pred HHhhhccCCcEEEecCC
Q 032570 65 GVAAANSQILVIRVPLL 81 (138)
Q Consensus 65 gvva~~t~~PVIgvP~~ 81 (138)
+=.--. ..=||-|=++
T Consensus 217 ~~~vk~-gavVIDvGin 232 (282)
T PRK14180 217 ADMVKE-GAVVIDVGIN 232 (282)
T ss_pred HHHcCC-CcEEEEeccc
Confidence 533211 1227666554
No 222
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.19 E-value=14 Score=30.75 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH-HHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCC
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~-~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
.-.+..+++.+.|++.|+.+.+.-......++ ...+. +.....+++.+|++-|=-.-|-.+=......||+++|.-.
T Consensus 13 ~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 13 EALKLAYRVYDFLKVSGYEVVVDSETYEHLPE-FSEEDVLPLEEMDVDFIIAIGGDGTILRIEHKTKKDIPILGINMGT 90 (277)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecchhhhcCc-ccccccccccccCCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC
Confidence 44567788888888888866553211111110 00011 1222235787777755444443332334578999999854
No 223
>PRK09701 D-allose transporter subunit; Provisional
Probab=63.12 E-value=58 Score=26.24 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh--hhccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv--a~~t~~PVIgv 78 (138)
...+.+.+.+++.|+...+.....-..+++..+++++...++++.||..+.........+ +-...+||+.+
T Consensus 41 ~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~~giPvV~~ 113 (311)
T PRK09701 41 DMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNL 113 (311)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEe
Confidence 345666677788886554432222235566667777777778998887765543332222 22345888876
No 224
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=63.05 E-value=62 Score=24.26 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
.+.+.+.+.+++.|+ ++.+......+++..+++++...++++.+|........+...+.- ....|+|.+
T Consensus 16 ~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~~ 86 (267)
T cd01536 16 AMNKGAEAAAKELGV--ELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKANAAGIPVVTV 86 (267)
T ss_pred HHHHHHHHHHHhcCc--eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHHHCCCcEEEe
Confidence 455666677777775 555566666888888888877777889888775543333223322 345788876
No 225
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=62.98 E-value=42 Score=27.47 Aligned_cols=61 Identities=8% Similarity=0.044 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCC-chHHHHHHHHhhhcCCeEEEEecCcCCchh
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEAHLS 64 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~-p~~~~~~~~~~~~~~~~viIa~AG~~a~L~ 64 (138)
.+|++.+.++.+..++.|....+.+..++|. ++.+.++++.+.+-|++.|-.+-=.-...|
T Consensus 105 ~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P 166 (266)
T cd07944 105 KHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYP 166 (266)
T ss_pred cccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCH
Confidence 4688899999999999999888888888876 578888888887778886554433333333
No 226
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.91 E-value=43 Score=25.83 Aligned_cols=69 Identities=22% Similarity=0.143 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCC-CchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhc--cCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR-~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~--t~~PVIgv 78 (138)
...+.+.+.++++|+.+. +...-. .++...+.++++..++++.+|........+...+... -..||+.+
T Consensus 17 ~~~~g~~~~~~~~g~~v~--~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~ 88 (271)
T cd06312 17 VVKNGAEDAAKDLGVDVE--YRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISF 88 (271)
T ss_pred HHHHHHHHHHHHhCCEEE--EECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEe
Confidence 345666777778887544 443334 7787888888887778998887664433333444322 24688876
No 227
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=62.66 E-value=30 Score=25.06 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=44.6
Q ss_pred HHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcC----CchhHHhhhccCCcEE--EecCC
Q 032570 12 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE----AHLSGVAAANSQILVI--RVPLL 81 (138)
Q Consensus 12 ~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~----a~L~gvva~~t~~PVI--gvP~~ 81 (138)
-.+..|+++|..... ..-..-.++.+.+.++++.++ ++++|+..|.+ .+.+-++.......+- ++|..
T Consensus 23 ~l~~~l~~~G~~v~~-~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g~~D~t~~ai~~~g~~~~~g~~~~~~ 96 (133)
T cd00758 23 ALEALLEDLGCEVIY-AGVVPDDADSIRAALIEASRE-ADLVLTTGGTGVGRRDVTPEALAELGEREAHGKGVALA 96 (133)
T ss_pred HHHHHHHHCCCEEEE-eeecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCCCCcchHHHHHHhcCEEeccCccccc
Confidence 455668899976433 223466777788877766544 89888876654 5778888776655555 45544
No 228
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=62.27 E-value=50 Score=22.90 Aligned_cols=61 Identities=23% Similarity=0.242 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeE--------------------EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh
Q 032570 5 LDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 64 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~--------------------~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~ 64 (138)
+=...++.....|..+|.+.. +-+.|..+..+++.+.++.+++++++||.......+-|+
T Consensus 10 ~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 10 KSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred HhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 344566777777776776532 455666677777777777777777776666555566555
Q ss_pred H
Q 032570 65 G 65 (138)
Q Consensus 65 g 65 (138)
.
T Consensus 90 ~ 90 (128)
T cd05014 90 K 90 (128)
T ss_pred h
Confidence 5
No 229
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=62.25 E-value=18 Score=25.58 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 67 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv 67 (138)
.-+-.++.+.|+++|+++++-+++. +....+. .++++|++ +.+|+.-+
T Consensus 16 ~~ik~kve~~l~~~gi~~~~~~~~v----~~~~~~~-----~~aDiiv~----s~~l~~~~ 63 (93)
T COG3414 16 TMIKMKVEEVLKELGIDVDVEQCAV----DEIKALT-----DGADIIVT----STKLADEF 63 (93)
T ss_pred HHHHHHHHHHHHHcCCCceeeeEEe----cccccCC-----CcccEEEE----ehHhhhhc
Confidence 3456788999999999999888876 3333332 46899998 56666554
No 230
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=62.21 E-value=65 Score=25.48 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh--hhccCCcEEEe
Q 032570 10 MNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANSQILVIRV 78 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~S-aHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv--a~~t~~PVIgv 78 (138)
.+.+.+.++++|. +.+.+.. ....+++..++++.+.+++++.||...-....+-..+ +.....|||.+
T Consensus 17 ~~gi~~~a~~~g~-~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~ 87 (302)
T TIGR02637 17 NKGAEEAAKELGS-VYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKRGIKVVTW 87 (302)
T ss_pred HHHHHHHHHHhCC-eeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEe
Confidence 4556677788884 3444433 3346777888888888888998888654333333334 22346799876
No 231
>PRK10824 glutaredoxin-4; Provisional
Probab=62.11 E-value=32 Score=25.11 Aligned_cols=62 Identities=18% Similarity=0.025 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCCCCCC
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWS 86 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~~~~~ 86 (138)
=|+|.++.+.|+.+|++|+..-.- ..++ +.+.+++. ++..+.|-|= +.+.-.+
T Consensus 30 Cpyc~~ak~lL~~~~i~~~~idi~--~d~~-~~~~l~~~----------------------sg~~TVPQIF--I~G~~IG 82 (115)
T PRK10824 30 CGFSAQAVQALSACGERFAYVDIL--QNPD-IRAELPKY----------------------ANWPTFPQLW--VDGELVG 82 (115)
T ss_pred CchHHHHHHHHHHcCCCceEEEec--CCHH-HHHHHHHH----------------------hCCCCCCeEE--ECCEEEc
Confidence 478999999999999998643332 2333 33333322 2456777654 3444567
Q ss_pred chh-hhhhhc
Q 032570 87 EDD-VINSIR 95 (138)
Q Consensus 87 G~d-LlS~lq 95 (138)
|.| |..+.+
T Consensus 83 G~ddl~~l~~ 92 (115)
T PRK10824 83 GCDIVIEMYQ 92 (115)
T ss_pred ChHHHHHHHH
Confidence 888 777655
No 232
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=62.03 E-value=66 Score=24.69 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCC----CeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGV----PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi----~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
.+.+.+.+.+++.|. +.++-+......++...++++++.+++++.||... ..+.... .......|||.+
T Consensus 15 ~~~~gi~~~~~~~g~~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vd~iI~~~-~~~~~~~-~~~~~~iPvV~~ 87 (281)
T cd06325 15 AARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQSNLPTIARKFVADKPDLIVAIA-TPAAQAA-ANATKDIPIVFT 87 (281)
T ss_pred HHHHHHHHHHHHhCccCCceEEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC-cHHHHHH-HHcCCCCCEEEE
Confidence 355667777887774 56677776666788888888888888899888864 3222221 233456799876
No 233
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=61.77 E-value=63 Score=25.77 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhc--CCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~--~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
...+.+.+.++++|+ ++.+...+..+++..++++...++ +++-||..... ......+-- .-..|||-+
T Consensus 17 ~~~~gi~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~-~~~~~~~~~~~~~giPvV~~ 88 (305)
T cd06324 17 SVARFMQAAADDLGI--ELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEK-SVAPELLRLAEGAGVKLFLV 88 (305)
T ss_pred HHHHHHHHHHHhcCC--eEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCc-cchHHHHHHHHhCCCeEEEE
Confidence 345566777788876 455556778888888888888887 89988875433 234443332 345688865
No 234
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=61.50 E-value=70 Score=26.00 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHh-CCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEe
Q 032570 6 DLPVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 56 (138)
Q Consensus 6 D~~~~~~~~~~L~~~-gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~ 56 (138)
|.....++.+.+++. ++|.-+++.. ..++..++++.+++.|++.|++.
T Consensus 138 ~~~~~~eiv~~vr~~~~~Pv~vKl~~---~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 138 DPEAVAEIVKAVKKATDVPVIVKLTP---NVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCC---CchhHHHHHHHHHHcCCCEEEEE
Confidence 445555655555543 7777777632 12356666666666677766543
No 235
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.45 E-value=13 Score=31.47 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCe-------------------------EEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCch
Q 032570 9 VMNDAARTLSDFGVPY-------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 63 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~-------------------------~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L 63 (138)
+.+-+.+.|+++|+++ ...|...|..+..+.++.+ .++++|++.|..+-+
T Consensus 143 Tp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~-----~ADIvVsAvGkp~~i 217 (294)
T PRK14187 143 TPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCS-----KADILVAAVGIPNFV 217 (294)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHh-----hCCEEEEccCCcCcc
Confidence 3456677888888864 2477888998888888765 479999999998876
Q ss_pred hHHhhhccCCcEEEecC
Q 032570 64 SGVAAANSQILVIRVPL 80 (138)
Q Consensus 64 ~gvva~~t~~PVIgvP~ 80 (138)
.+=.--. ..=||-|=+
T Consensus 218 ~~~~ik~-gaiVIDVGi 233 (294)
T PRK14187 218 KYSWIKK-GAIVIDVGI 233 (294)
T ss_pred CHHHcCC-CCEEEEecc
Confidence 6533221 122776644
No 236
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=61.35 E-value=11 Score=24.41 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=19.2
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEE
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKI 28 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V 28 (138)
++.|.+.+++.+..|.+|||...+..
T Consensus 27 ~~~s~~ll~~v~~lL~~lGi~~~i~~ 52 (77)
T PF14528_consen 27 SSKSKELLEDVQKLLLRLGIKASIYE 52 (77)
T ss_dssp EES-HHHHHHHHHHHHHTT--EEEEE
T ss_pred EECCHHHHHHHHHHHHHCCCeeEEEE
Confidence 35789999999999999999876553
No 237
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=61.22 E-value=68 Score=26.18 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHH-hCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEec
Q 032570 5 LDLPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 57 (138)
Q Consensus 5 SD~~~~~~~~~~L~~-~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~A 57 (138)
.|.+...++.+.+++ .++|.-+++.. +.++..++++.+++-|++.|.+..
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKi~~---~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTDVPVFAKLSP---NVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEECCC---ChhhHHHHHHHHHHcCCCEEEEEc
Confidence 366677777777764 58888888752 445677788777778888887654
No 238
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=61.19 E-value=92 Score=25.62 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcc--CCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh-hhccCCcEEEe
Q 032570 9 VMNDAARTLSDFGVPYEIKILPP--HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA-AANSQILVIRV 78 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~Sa--HR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv-a~~t~~PVIgv 78 (138)
..+.+.+.++++|+ ++.+... .-..++..+.+++..+++++.||........+...+ +-.-..||+.+
T Consensus 64 ~~~gi~~aa~~~G~--~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l~~~~~giPvV~~ 134 (343)
T PRK10936 64 VNYGMVEEAKRLGV--DLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTPDGLNPDLELQAANIPVIAL 134 (343)
T ss_pred HHHHHHHHHHHhCC--EEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHCCCCEEEe
Confidence 45567777888886 4544433 234566677788887888998877654444333333 22346799865
No 239
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=61.16 E-value=28 Score=21.71 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=35.6
Q ss_pred CCCcCCHHHHHHHHHHHHHhCCCe------------EEEEEccCCCchHHHHHHHHhh-hcCCeEEEE
Q 032570 1 MESDLDLPVMNDAARTLSDFGVPY------------EIKILPPHQNCKEALSYALSAK-ERGIKIIIV 55 (138)
Q Consensus 1 mGS~SD~~~~~~~~~~L~~~gi~~------------~~~V~SaHR~p~~~~~~~~~~~-~~~~~viIa 55 (138)
+||.++.+-+++....|+..|.+. -+++ +...+-++..+..++.. ..+.+.+|.
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~-G~f~~~~~A~~~~~~l~~~~~~~~~vv 75 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRV-GPFSSREEAEAALRKLKKAAGPDAFVV 75 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEE-CCECTCCHHHHHHHHHHHHHTS--EEE
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEE-CCCCCHHHHHHHHHHHhHhhCCCCEEE
Confidence 467788899999999998888752 2333 56678888888887777 567776653
No 240
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=60.82 E-value=71 Score=24.23 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
..+.+.+.+.++++|....+.-.. .-.+++-.++++...++.++-+|...-......-.-.-.-..|||.+
T Consensus 15 ~~~~~gi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~ 85 (264)
T cd01574 15 SSTLAAIESAAREAGYAVTLSMLA-EADEEALRAAVRRLLAQRVDGVIVNAPLDDADAALAAAPADVPVVFV 85 (264)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCC-CCchHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHhcCCCEEEE
Confidence 456778888899988665544322 22346667777777777788887765544443211112234788876
No 241
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=60.74 E-value=89 Score=25.29 Aligned_cols=48 Identities=6% Similarity=-0.027 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEec
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 57 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~A 57 (138)
.+.+.+.+.++++|. ++-+...+..+++..++++...+++++-||...
T Consensus 76 ~l~~gi~~~~~~~gy--~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~ 123 (346)
T PRK10401 76 ALVKAVDLVAQQHQK--YVLIGNSYHEAEKERHAIEVLIRQRCNALIVHS 123 (346)
T ss_pred HHHHHHHHHHHHCCC--EEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeC
Confidence 355667777888874 566777777888888888888777889777764
No 242
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=60.31 E-value=48 Score=25.23 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEec
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 57 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~A 57 (138)
..+.+.+.+.++++|. ++.+...+..+++..+.++...+.+++.+|...
T Consensus 15 ~~i~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (260)
T cd06286 15 SQLVDGIEKAALKHGY--KVVLLQTNYDKEKELEYLELLKTKQVDGLILCS 63 (260)
T ss_pred HHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 4566788888888885 555666688888888888888788889777654
No 243
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=60.29 E-value=70 Score=24.81 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccC--CCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh-hccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-ANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaH--R~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva-~~t~~PVIgv 78 (138)
.+.+.+.+.++++|+. +-+.... ...+...+++++..+++++.||..+.....+.-+.. -....|||-+
T Consensus 16 ~~~~gi~~~a~~~g~~--~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~ 87 (268)
T cd06306 16 SVNYGMVEEAKRLGVS--LKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAASIPVIAL 87 (268)
T ss_pred HHHHHHHHHHHHcCCE--EEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHCCCCEEEe
Confidence 3455666778888864 4444433 234566678888877889988877654333321111 2346798865
No 244
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=60.21 E-value=19 Score=23.19 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPH 32 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaH 32 (138)
+.+.++.-.|++.|++|+.......
T Consensus 10 ~~~~~v~~~l~~~gl~~~~~~~~~~ 34 (81)
T cd03048 10 PNGFKVSIMLEELGLPYEIHPVDIS 34 (81)
T ss_pred CChHHHHHHHHHcCCCcEEEEecCc
Confidence 7789999999999999998777653
No 245
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=60.20 E-value=1.6e+02 Score=28.34 Aligned_cols=112 Identities=12% Similarity=0.085 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC-chhHHhhhccCCcEEEecCCCCCCCc
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQILVIRVPLLSEDWSE 87 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a-~L~gvva~~t~~PVIgvP~~~~~~~G 87 (138)
..++..+..+++|+.-.++..+.+-......++...+ .+..+||+.-+=-++ +|.-+=|..+-+|||+- +.+|
T Consensus 604 ~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~i-Ad~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT-----~~GG 677 (784)
T TIGR02470 604 EIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYI-ADTKGIFVQPALYEAFGLTVLEAMTCGLPTFAT-----RFGG 677 (784)
T ss_pred HHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHh-hccCcEEEECCcccCCCHHHHHHHHcCCCEEEc-----CCCC
Confidence 4566667778899987888887654444444543322 123568877765554 56666677788999972 2334
Q ss_pred hh-hhhhhcCCCCCeeeEEecCCchhHHHHHHHHHc-----cCCHHHHHHHHH
Q 032570 88 DD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLG-----IADEDLLERIRK 134 (138)
Q Consensus 88 ~d-LlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~-----~~~~~l~~kl~~ 134 (138)
.. +.. .|.. + ..| ++.+..-+|..|.. +.|++.|+++..
T Consensus 678 ~~EiV~-----dg~t-G-fLV-dp~D~eaLA~aL~~ll~kll~dp~~~~~ms~ 722 (784)
T TIGR02470 678 PLEIIQ-----DGVS-G-FHI-DPYHGEEAAEKIVDFFEKCDEDPSYWQKISQ 722 (784)
T ss_pred HHHHhc-----CCCc-E-EEe-CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33 321 1211 0 112 33444445555543 378999888753
No 246
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.17 E-value=15 Score=31.18 Aligned_cols=50 Identities=20% Similarity=0.138 Sum_probs=33.4
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
..|...|+....+.++.+ .++++|++.|...-+.+=.=-.- .=||-|=++
T Consensus 190 atVtv~hs~T~~l~~~~~-----~ADIvVsAvGkp~~i~~~~ik~g-avVIDvGin 239 (297)
T PRK14168 190 ATVTIVHTRSKNLARHCQ-----RADILIVAAGVPNLVKPEWIKPG-ATVIDVGVN 239 (297)
T ss_pred CEEEEecCCCcCHHHHHh-----hCCEEEEecCCcCccCHHHcCCC-CEEEecCCC
Confidence 457778988888887764 47999999999887654332111 126766443
No 247
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=60.15 E-value=21 Score=29.38 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=33.1
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecC
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 58 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG 58 (138)
+..|-+++++.++.|+++|+. |.+.|+.-..+..+.+...+ .++|.+.-|
T Consensus 44 ~~~~~~Yv~k~~~~l~~lg~~----v~~L~l~~~~~~~Ie~~l~~--~d~IyVgGG 93 (224)
T COG3340 44 DSEDDFYVEKVRNALAKLGLE----VSELHLSKPPLAAIENKLMK--ADIIYVGGG 93 (224)
T ss_pred ccchHHHHHHHHHHHHHcCCe----eeeeeccCCCHHHHHHhhhh--ccEEEECCc
Confidence 456778999999999999985 44556655555554433322 566665555
No 248
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=59.97 E-value=32 Score=26.89 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 67 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~S-aHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv 67 (138)
++.++++.+..+++|....+..-. ..-+|+++.++.+...+-|++.|..+.-.-...|--+
T Consensus 107 ~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v 168 (237)
T PF00682_consen 107 LERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDV 168 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHH
T ss_pred HHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHH
Confidence 778888888999999988776644 4556788888888887778887655544444455443
No 249
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=59.95 E-value=31 Score=23.08 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=22.5
Q ss_pred CcCCHHHHHHHHHHHHHhCCC---eEEEEEccCCCc
Q 032570 3 SDLDLPVMNDAARTLSDFGVP---YEIKILPPHQNC 35 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~---~~~~V~SaHR~p 35 (138)
|++.=|+|+++++.|++++++ +++.....++..
T Consensus 6 s~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~ 41 (86)
T TIGR02183 6 GRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG 41 (86)
T ss_pred eCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH
Confidence 345568999999999999764 344445555443
No 250
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=59.86 E-value=24 Score=24.31 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHH
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALS 44 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~S-aHR~p~~~~~~~~~ 44 (138)
+.=+.|+++.+.|++.|++|+.+=.. -.-+.+++.++.+.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 44578999999999999999865443 34456667666643
No 251
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=59.55 E-value=17 Score=29.35 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEe----cCcCCchhHHhhhccCCcEEEecC
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG----DGVEAHLSGVAAANSQILVIRVPL 80 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~----AG~~a~L~gvva~~t~~PVIgvP~ 80 (138)
..+.+.+.|++.|+++++- ... +.+.+.+ +..++++++.. -|...++++++..+ .+|++|.+.
T Consensus 24 s~~~i~~al~~~g~~v~~i--~~~---~~~~~~~---~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gi~~~g~~~ 90 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPI--DPG---EDIAAQL---KELGFDRVFNALHGRGGEDGTIQGLLELL-GIPYTGSGV 90 (304)
T ss_pred hHHHHHHHHHHCCCEEEEE--ecC---cchHHHh---ccCCCCEEEEecCCCCCCccHHHHHHHHc-CCCccCCCH
Confidence 4488999999999975543 222 2233332 23467876655 34566777776544 777777543
No 252
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=59.44 E-value=30 Score=27.39 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCch-------HHHHHHHHhhhcCCeEEEE
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCK-------EALSYALSAKERGIKIIIV 55 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~-------~~~~~~~~~~~~~~~viIa 55 (138)
|.+.+++..+.|++ .+|+-|++.|-..+ +..+++++..+.|+++||.
T Consensus 158 ~~~~i~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG 211 (239)
T smart00854 158 DREKILADIARARK---KADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIG 211 (239)
T ss_pred CHHHHHHHHHHHhc---cCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEc
Confidence 45555555555554 57999999996533 3456777666678998884
No 253
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=59.38 E-value=44 Score=21.32 Aligned_cols=28 Identities=32% Similarity=0.298 Sum_probs=16.6
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEE
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKII 53 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~vi 53 (138)
+-+.|..+..+++.+.++.++++|.+++
T Consensus 51 ~i~iS~sg~t~~~~~~~~~a~~~g~~ii 78 (87)
T cd04795 51 VIALSYSGRTEELLAALEIAKELGIPVI 78 (87)
T ss_pred EEEEECCCCCHHHHHHHHHHHHcCCeEE
Confidence 4455556666666666666666665543
No 254
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=59.02 E-value=15 Score=32.28 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh
Q 032570 10 MNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 64 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~-------------------------~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~ 64 (138)
.+-+.+.|+.+|++.+ ..|...|.....+.++.+ .+|++|++.|...-+.
T Consensus 215 p~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r-----~ADIVIsAvGkp~~i~ 289 (364)
T PLN02616 215 PKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITR-----EADIIISAVGQPNMVR 289 (364)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHh-----hCCEEEEcCCCcCcCC
Confidence 3456778888888642 467778988888888874 4799999999988765
Q ss_pred HHhhhccCCcEEEecCC
Q 032570 65 GVAAANSQILVIRVPLL 81 (138)
Q Consensus 65 gvva~~t~~PVIgvP~~ 81 (138)
+=.--. -.=||-|=+.
T Consensus 290 ~d~vK~-GAvVIDVGIn 305 (364)
T PLN02616 290 GSWIKP-GAVVIDVGIN 305 (364)
T ss_pred HHHcCC-CCEEEecccc
Confidence 433211 1226666554
No 255
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=58.88 E-value=43 Score=22.94 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCch
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 63 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L 63 (138)
.++.+.|++.|+++++.=++. ..+... ..++++||+..-....+
T Consensus 5 mkIk~~L~e~Gi~~~ve~~di----ss~~~~-----~~~aDiiVtt~~l~~~~ 48 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCAV----GEYKSE-----LSGADIIIASTHIAGEI 48 (85)
T ss_pred HHHHHHHHHcCCCeEEEEeeh----hhcccC-----CCCCCEEEECccchhhh
Confidence 367899999999988654433 122111 12579999855444433
No 256
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=58.86 E-value=25 Score=24.87 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCC-CchHHHHHHHH
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYALS 44 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR-~p~~~~~~~~~ 44 (138)
=+.|+++.+.|++.|++|+.+=..... +.+++.++++.
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 9 CSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 368999999999999999876655433 44566666543
No 257
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=58.79 E-value=24 Score=22.56 Aligned_cols=28 Identities=32% Similarity=0.600 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCc
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNC 35 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p 35 (138)
|.++++.-.|+++|++|++.+....+.+
T Consensus 3 P~a~Rv~i~l~~~gl~~~~~~v~~~~~~ 30 (70)
T PF13409_consen 3 PFAHRVRIALEEKGLPYEIKVVPLIPKG 30 (70)
T ss_dssp HHHHHHHHHHHHHTGTCEEEEEETTTTB
T ss_pred hHhHHHHHHHHHhCCCCEEEEEeeecCc
Confidence 6789999999999999999888443333
No 258
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=58.69 E-value=23 Score=21.91 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcc
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPP 31 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~Sa 31 (138)
+.++++.-.|++.|++|+.+....
T Consensus 10 ~~~~~v~~~l~~~~~~~~~~~i~~ 33 (73)
T cd03056 10 GNCYKVRLLLALLGIPYEWVEVDI 33 (73)
T ss_pred ccHHHHHHHHHHcCCCcEEEEecC
Confidence 568899999999999999877654
No 259
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=58.44 E-value=1.3e+02 Score=26.30 Aligned_cols=71 Identities=18% Similarity=0.051 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccC-CCchHHHHHHHHhhhcCCeEEEE--ecCcCCchhHHhhhccCCcEEEecCC
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIIIV--GDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaH-R~p~~~~~~~~~~~~~~~~viIa--~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
..+++.+.|++.++ ++...+.= .++++..+..+.++..+++.+|+ ..+...++-.-.+....+||+-.-+.
T Consensus 24 ~~~~~~~~l~~~~~--~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~~~~~~~~~~~~Pvll~a~~ 97 (452)
T cd00578 24 YAREVADLLNELPV--EVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAKMWIAGLSELRKPVLLLATQ 97 (452)
T ss_pred HHHHHHHHHhcCCc--eEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccHHHHHHHHHhcCCCEEEEeCC
Confidence 34555566666544 54444433 48888988888887778887776 44444444333445678898755443
No 260
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=58.28 E-value=27 Score=24.46 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHH
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 41 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~ 41 (138)
.+-++++++.-+|.+-|++|++.-......|+.+.++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~ 56 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDL 56 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHh
Confidence 4558999999999999999999878777778776554
No 261
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.73 E-value=17 Score=30.63 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCe-------------------------EEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh
Q 032570 10 MNDAARTLSDFGVPY-------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 64 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~-------------------------~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~ 64 (138)
.+-+.+.|+++|++. ...|...|..++.+.++.+ .++++|+++|...-+.
T Consensus 141 p~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~-----~ADIvI~AvGk~~~i~ 215 (282)
T PRK14182 141 PAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVG-----RADILVAAIGKAELVK 215 (282)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHh-----hCCEEEEecCCcCccC
Confidence 455667778887753 1467777988888888764 4799999999876655
Q ss_pred HHhhhccCCcEEEecCC
Q 032570 65 GVAAANSQILVIRVPLL 81 (138)
Q Consensus 65 gvva~~t~~PVIgvP~~ 81 (138)
+=.-- -..=||-|=+.
T Consensus 216 ~~~ik-~gaiVIDvGin 231 (282)
T PRK14182 216 GAWVK-EGAVVIDVGMN 231 (282)
T ss_pred HHHcC-CCCEEEEeece
Confidence 42211 11226666654
No 262
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=57.72 E-value=32 Score=27.43 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCC-------chHHHHHHHHhhhcCCeEEEE
Q 032570 10 MNDAARTLSDFGVPYEIKILPPHQN-------CKEALSYALSAKERGIKIIIV 55 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~SaHR~-------p~~~~~~~~~~~~~~~~viIa 55 (138)
++++.+..+++.=++|+-|++.|=. .++..++.+.+.+.|+++||+
T Consensus 170 ~~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG 222 (250)
T PF09587_consen 170 IERIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIG 222 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEe
Confidence 3666666666665689999999987 667778888887889999985
No 263
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=57.64 E-value=58 Score=22.18 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=8.3
Q ss_pred cCCeEEEEecCcCCchhHH
Q 032570 48 RGIKIIIVGDGVEAHLSGV 66 (138)
Q Consensus 48 ~~~~viIa~AG~~a~L~gv 66 (138)
.+++.+|.++-..+.+...
T Consensus 84 ~~~dllviG~~~~~~~~~~ 102 (124)
T cd01987 84 HNVTQIVVGKSRRSRWREL 102 (124)
T ss_pred cCCCEEEeCCCCCchHHHH
Confidence 3444444444444444333
No 264
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=57.50 E-value=19 Score=33.34 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=34.4
Q ss_pred CCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhh-----ccCCcEEEecCC
Q 032570 33 QNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-----NSQILVIRVPLL 81 (138)
Q Consensus 33 R~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~-----~t~~PVIgvP~~ 81 (138)
++++...+.+++.++.+++.+|.+-|-... =+-.++- ....+|||||-.
T Consensus 174 ~~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKT 228 (568)
T PLN02251 174 ETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKT 228 (568)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCce
Confidence 356778888888888889988888775332 2223332 356999999986
No 265
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=57.37 E-value=19 Score=29.73 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=40.8
Q ss_pred CeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCc--EEEecCCCCC
Q 032570 23 PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL--VIRVPLLSED 84 (138)
Q Consensus 23 ~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~P--VIgvP~~~~~ 84 (138)
.+.+...+-.-.|++-.+..+.+-++|++||..+||.++.=.-=.+-..... +||+..+-..
T Consensus 162 ~v~~~~~gs~~D~~~~~~~a~~li~~GaDvI~~~ag~~~~gv~~aa~e~g~~~~~IG~d~dq~~ 225 (306)
T PF02608_consen 162 KVNVSYTGSFNDPAKAKEAAEALIDQGADVIFPVAGGSGQGVIQAAKEAGVYGYVIGVDSDQSY 225 (306)
T ss_dssp EEEEEE-SSSS-HHHHHHHHHHHHHTT-SEEEEE-CCCHHHHHHHHHHHTHETEEEEEES--CC
T ss_pred eEEEEEcCCcCchHHHHHHHHHHhhcCCeEEEECCCCCchHHHHHHHHcCCceEEEEecccccc
Confidence 3455666777899999999988888999999999996553222233446666 9999887543
No 266
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=57.01 E-value=27 Score=21.48 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcc
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPP 31 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~Sa 31 (138)
+.+.++.-.|++.|++|+......
T Consensus 10 ~~~~~~~~~L~~~~l~~~~~~v~~ 33 (74)
T cd03051 10 PNPRRVRIFLAEKGIDVPLVTVDL 33 (74)
T ss_pred cchHHHHHHHHHcCCCceEEEeec
Confidence 678999999999999998876654
No 267
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=56.99 E-value=1e+02 Score=26.20 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHH-HhC-----CCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCc
Q 032570 5 LDLPVMNDAARTLS-DFG-----VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 59 (138)
Q Consensus 5 SD~~~~~~~~~~L~-~~g-----i~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~ 59 (138)
.|.+.++++.+.++ ..+ +|.-+++. .+-+.+++.++++.+++.|++-|++..+.
T Consensus 189 ~~~~~~~eiv~aVr~~~~~~~~~~PV~vKls-p~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 189 QYGEALDELLAALKEAQAELHGYVPLLVKIA-PDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCceEEEeC-CCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 45556666655555 355 89888988 56566678888888888889988887654
No 268
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.89 E-value=83 Score=23.75 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh--hhccCCcEEEec
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANSQILVIRVP 79 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv--a~~t~~PVIgvP 79 (138)
..+.+.+.+.++++|+.+.+. ...... +..+.++++..++++.+|..+..... ..+ ......|||.+=
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~--~~~~~~-~~~~~i~~~~~~~vdgiii~~~~~~~--~~~~~~~~~~ipvV~~~ 84 (266)
T cd06278 15 SELLEALSRALQARGYQPLLI--NTDDDE-DLDAALRQLLQYRVDGVIVTSGTLSS--ELAEECRRNGIPVVLIN 84 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEE--cCCCCH-HHHHHHHHHHHcCCCEEEEecCCCCH--HHHHHHhhcCCCEEEEC
Confidence 345667778888999765443 333333 55667777777889988876654322 222 223467988873
No 269
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=56.86 E-value=1.3e+02 Score=26.45 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=35.2
Q ss_pred hHHhhhccCCcEEEecCCCCCCCchh-hhhhhcCCCCCeeeEEecCCchhHHHHHHHHHcc--CCHHHHHHHHHH
Q 032570 64 SGVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI--ADEDLLERIRKY 135 (138)
Q Consensus 64 ~gvva~~t~~PVIgvP~~~~~~~G~d-LlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~~--~~~~l~~kl~~~ 135 (138)
+.+.|..+-.|+|+++-+.. .+ ++..+.+|.. ++.+++.....+. .++..+ +.++++++|+..
T Consensus 338 a~I~a~~~gvP~i~i~Y~~K----~~~~~~~lg~~~~----~~~~~~l~~~~Li-~~v~~~~~~r~~~~~~l~~~ 403 (426)
T PRK10017 338 SAIISMNFGTPAIAINYEHK----SAGIMQQLGLPEM----AIDIRHLLDGSLQ-AMVADTLGQLPALNARLAEA 403 (426)
T ss_pred HHHHHHHcCCCEEEeeehHH----HHHHHHHcCCccE----EechhhCCHHHHH-HHHHHHHhCHHHHHHHHHHH
Confidence 45667788999999988533 34 7788877742 2334443333222 223222 334566665543
No 270
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=56.43 E-value=54 Score=21.48 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=26.5
Q ss_pred hCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhH
Q 032570 20 FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 65 (138)
Q Consensus 20 ~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~g 65 (138)
.|++++..+... .+ ...+.+..++++++++|.++.....+..
T Consensus 68 ~~~~~~~~~~~~--~~--~~~i~~~~~~~~~dlvvig~~~~~~~~~ 109 (130)
T cd00293 68 AGVKVETVVLEG--DP--AEAILEAAEELGADLIVMGSRGRSGLRR 109 (130)
T ss_pred CCCceEEEEecC--CC--HHHHHHHHHHcCCCEEEEcCCCCCccce
Confidence 577766665532 22 4455555566789999998876666543
No 271
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=56.29 E-value=90 Score=23.96 Aligned_cols=67 Identities=7% Similarity=0.031 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEecC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRVPL 80 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgvP~ 80 (138)
...+.+.+.++++|+...+.... +. +..++.+....++++.||....... ...+.- ....||+.+-.
T Consensus 27 ~~~~gi~~~~~~~g~~~~v~~~~-~~---~~~~~~~~l~~~~~dgiii~~~~~~--~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 27 SLLGGIADALAERGYDLLLSFVS-SP---DRDWLARYLASGRADGVILIGQHDQ--DPLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCC-ch---hHHHHHHHHHhCCCCEEEEeCCCCC--hHHHHHHHhCCCCEEEECC
Confidence 35566888888898765554322 11 2334444445567898877654322 122222 34689987754
No 272
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=55.78 E-value=69 Score=22.45 Aligned_cols=55 Identities=29% Similarity=0.309 Sum_probs=40.5
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCCC
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE 83 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~~ 83 (138)
+-+.|-.....++.+.++.++++|+++|... +.+ .|+.....+ ..|+|-||....
T Consensus 47 ~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT-~~~-~l~~~~~~~-~~~~~~~p~~~~ 101 (119)
T cd05017 47 VIAVSYSGNTEETLSAVEQAKERGAKIVAIT-SGG-KLLEMAREH-GVPVIIIPKGLQ 101 (119)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEe-CCc-hHHHHHHHc-CCcEEECCCCCC
Confidence 5677788888899999999999998765444 333 477754444 789999887653
No 273
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=55.68 E-value=64 Score=22.11 Aligned_cols=77 Identities=26% Similarity=0.293 Sum_probs=50.7
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCe---------------------EEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcC
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPY---------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~---------------------~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~ 60 (138)
|+-+....++.....|.++|... -+-+.|..+...++.+.++.+++++.++|.......
T Consensus 12 G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 12 GSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp ESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred EcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 44555677777777777766531 167888899999999999988888988854444444
Q ss_pred CchhHHhhhccCCcEEEecCCCC
Q 032570 61 AHLSGVAAANSQILVIRVPLLSE 83 (138)
Q Consensus 61 a~L~gvva~~t~~PVIgvP~~~~ 83 (138)
+-+.- +++. +|-+|....
T Consensus 92 ~~l~~----~ad~-~l~~~~~~~ 109 (131)
T PF01380_consen 92 SPLAR----LADI-VLYIPTGEE 109 (131)
T ss_dssp SHHHH----HSSE-EEEEESSCG
T ss_pred Cchhh----hCCE-EEEecCCCc
Confidence 44333 2222 556666543
No 274
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.40 E-value=19 Score=30.56 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=33.7
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
..|...|.....+.++.+ .++++|++.|...-+.+=.--.- .=||-|=+.
T Consensus 183 atVtv~hs~T~~l~~~~~-----~ADIvIsAvGkp~~i~~~~ik~g-avVIDvGin 232 (297)
T PRK14186 183 ATVTIAHSRTQDLASITR-----EADILVAAAGRPNLIGAEMVKPG-AVVVDVGIH 232 (297)
T ss_pred CEEEEeCCCCCCHHHHHh-----hCCEEEEccCCcCccCHHHcCCC-CEEEEeccc
Confidence 366777888888888775 47999999999887654322111 126666554
No 275
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.29 E-value=20 Score=30.23 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=33.2
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
..|...|+....+.++.+ .++++|+++|...-+.+=.-- ...=||-|=++
T Consensus 183 AtVt~chs~T~~l~~~~~-----~ADIvIsAvGkp~~i~~~~ik-~gavVIDvGin 232 (278)
T PRK14172 183 ATVTICHSKTKNLKEVCK-----KADILVVAIGRPKFIDEEYVK-EGAIVIDVGTS 232 (278)
T ss_pred CEEEEeCCCCCCHHHHHh-----hCCEEEEcCCCcCccCHHHcC-CCcEEEEeecc
Confidence 367778987788888765 479999999998876543211 11226666443
No 276
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=54.96 E-value=80 Score=26.29 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCe---------------EEEEEccCCCchHHHHHHHHh---hhcCCeEEEEecCcCCchhHHhhhccCC
Q 032570 12 DAARTLSDFGVPY---------------EIKILPPHQNCKEALSYALSA---KERGIKIIIVGDGVEAHLSGVAAANSQI 73 (138)
Q Consensus 12 ~~~~~L~~~gi~~---------------~~~V~SaHR~p~~~~~~~~~~---~~~~~~viIa~AG~~a~L~gvva~~t~~ 73 (138)
+..+.|.+-|||. .+++. =|+.++..++++.+ ++-|++.++. =+....+.--+....+.
T Consensus 121 ~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~--grt~~~a~~~i~ra~a~~eAGA~~i~l-E~v~~~~~~~i~~~l~i 197 (264)
T PRK00311 121 ETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQ--GRDEEAAEKLLEDAKALEEAGAFALVL-ECVPAELAKEITEALSI 197 (264)
T ss_pred HHHHHHHHCCCCEeeeecccceeecccCCeeee--cCCHHHHHHHHHHHHHHHHCCCCEEEE-cCCCHHHHHHHHHhCCC
Confidence 3334556778775 24553 37777666666544 4557775443 23355788889899999
Q ss_pred cEEEec
Q 032570 74 LVIRVP 79 (138)
Q Consensus 74 PVIgvP 79 (138)
|+||+=
T Consensus 198 P~igiG 203 (264)
T PRK00311 198 PTIGIG 203 (264)
T ss_pred CEEEec
Confidence 999973
No 277
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=54.72 E-value=76 Score=22.65 Aligned_cols=76 Identities=14% Similarity=0.050 Sum_probs=40.9
Q ss_pred HHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCC------cEEEecCCCCCCCchh
Q 032570 16 TLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI------LVIRVPLLSEDWSEDD 89 (138)
Q Consensus 16 ~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~------PVIgvP~~~~~~~G~d 89 (138)
.+.++..++++.... ++..++..++.++.. .++ .|+++|+.+.+.-++.++-.. |.|++=|.+. |-|
T Consensus 19 ~~~~~l~~~~v~~t~-~~~~~~~~~~~~~~~--~~d-~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT---gNd 91 (124)
T smart00046 19 KFRLLLNPAQVFDLT-KKGPAAALVIFRDLP--KFD-RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT---GND 91 (124)
T ss_pred HHHHHcCCceEEEEe-cCChHHHHHHHhhcC--cCC-EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC---hhH
Confidence 344444566665554 344444444444332 234 555789999999998876421 3444433332 334
Q ss_pred hhhhhcCCC
Q 032570 90 VINSIRMPS 98 (138)
Q Consensus 90 LlS~lqmP~ 98 (138)
+--++.+|.
T Consensus 92 far~lgi~~ 100 (124)
T smart00046 92 LARSLGWGG 100 (124)
T ss_pred HHHHcCCCC
Confidence 555555554
No 278
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=54.56 E-value=1.1e+02 Score=24.49 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
.+.+.+.+.+++.|. ++-+......++...++++....++++-+|... .. ..+..+. .....|||-+
T Consensus 80 ~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~-~~-~~~~~~~~l~~~~iPvV~~ 148 (331)
T PRK14987 80 EVLRGIESVTDAHGY--QTMLAHYGYKPEMEQERLESMLSWNIDGLILTE-RT-HTPRTLKMIEVAGIPVVEL 148 (331)
T ss_pred HHHHHHHHHHHHCCC--EEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC-CC-CCHHHHHHHHhCCCCEEEE
Confidence 456667778888884 556666666777777777777777889877753 22 1223332 2346788864
No 279
>PRK09526 lacI lac repressor; Reviewed
Probab=54.37 E-value=1.1e+02 Score=24.47 Aligned_cols=69 Identities=9% Similarity=0.100 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccC-CCchHHHHHHHHhhhcCCeEEEEecCcC-CchhHHhhhccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaH-R~p~~~~~~~~~~~~~~~~viIa~AG~~-a~L~gvva~~t~~PVIgv 78 (138)
...+.+.+.++++|.. +.+.... ..+++..++++...+++++-+|...... ..+.-+..-....||+-+
T Consensus 80 ~~~~gi~~~a~~~g~~--~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~~~~~~~~~iPvV~~ 150 (342)
T PRK09526 80 QIAAAIKSRADQLGYS--VVISMVERSGVEACQAAVNELLAQRVSGVIINVPLEDADAEKIVADCADVPCLFL 150 (342)
T ss_pred HHHHHHHHHHHHCCCE--EEEEeCCCChHHHHHHHHHHHHhcCCCEEEEecCCCcchHHHHHhhcCCCCEEEE
Confidence 3566677778888865 4444333 3456666777777777888777643222 222222222235787765
No 280
>PLN02204 diacylglycerol kinase
Probab=54.28 E-value=48 Score=30.98 Aligned_cols=65 Identities=8% Similarity=0.032 Sum_probs=42.0
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHh---hhcCCeEEEEecCcCCchhHHhhhc
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA---KERGIKIIIVGDGVEAHLSGVAAAN 70 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~---~~~~~~viIa~AG~~a~L~gvva~~ 70 (138)
|..+.....+++...|+..|+++++.+.-.. ....++++.+ +.++++.||++ |+.+-+--++-|+
T Consensus 171 Gkg~~~~~~~~V~p~f~~a~i~~~v~~T~~a---ghA~d~~~~~~~~~l~~~D~VVaV-GGDGt~nEVlNGL 238 (601)
T PLN02204 171 GKGSGSRTWETVSPIFIRAKVKTKVIVTERA---GHAFDVMASISNKELKSYDGVIAV-GGDGFFNEILNGY 238 (601)
T ss_pred CCcchHHHHHHHHHHHHHcCCeEEEEEecCc---chHHHHHHHHhhhhccCCCEEEEE-cCccHHHHHHHHH
Confidence 3344556777899999999999888887543 3334444332 24568877765 6666666555555
No 281
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=54.08 E-value=20 Score=30.47 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=32.2
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
..|...|..+..+.++.+ .++++|++.|...-+..=.-- .-.=||-|=+.
T Consensus 192 ATVtvchs~T~nl~~~~~-----~ADIvv~AvGk~~~i~~~~vk-~gavVIDvGin 241 (299)
T PLN02516 192 ATVTVVHSRTPDPESIVR-----EADIVIAAAGQAMMIKGDWIK-PGAAVIDVGTN 241 (299)
T ss_pred CEEEEeCCCCCCHHHHHh-----hCCEEEEcCCCcCccCHHHcC-CCCEEEEeecc
Confidence 367777988888888774 479999999997554432111 11126666554
No 282
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=54.03 E-value=75 Score=25.98 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHH-HhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCc
Q 032570 5 LDLPVMNDAARTLS-DFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 59 (138)
Q Consensus 5 SD~~~~~~~~~~L~-~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~ 59 (138)
++.++++++++.|+ +||+.. ++..+-.-.|++-.++++.....++++++++=|.
T Consensus 113 ~~~~v~~~a~~~l~~~y~l~i-~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 113 GKPEVLAQTEAKLRTQWNVNI-VGSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred CCHHHHHHHHHHHHHHhCCEE-EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 45678999999886 456543 2223333356677778888877789999887664
No 283
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=53.89 E-value=58 Score=26.71 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=41.7
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEE--ccCC-CchHHHHHHHHhhhcCCeEEEEec
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKIL--PPHQ-NCKEALSYALSAKERGIKIIIVGD 57 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V~--SaHR-~p~~~~~~~~~~~~~~~~viIa~A 57 (138)
+.||++.++++.+..++.|..+...+. ...| +|+.+.++++.+.+-|++.|-.+-
T Consensus 113 ~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~D 170 (275)
T cd07937 113 ALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKD 170 (275)
T ss_pred cCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 458999999999999999987766563 2344 468888898888888888654443
No 284
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=53.83 E-value=71 Score=22.04 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhC-CCeE-------------------EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh
Q 032570 5 LDLPVMNDAARTLSDFG-VPYE-------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 64 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~g-i~~~-------------------~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~ 64 (138)
+-...++.....|.++| +++. +-+.|.....+++.+.++.++++|+++|..-....+-|.
T Consensus 9 ~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la 88 (126)
T cd05008 9 TSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLA 88 (126)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHH
Confidence 44556777777777775 5422 456677777778888888888888776655555555554
Q ss_pred H
Q 032570 65 G 65 (138)
Q Consensus 65 g 65 (138)
.
T Consensus 89 ~ 89 (126)
T cd05008 89 R 89 (126)
T ss_pred H
Confidence 4
No 285
>COG2901 Fis Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair]
Probab=53.81 E-value=12 Score=27.06 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.2
Q ss_pred HHHHHHHccCCHHHHHHHHHH
Q 032570 115 LYAVKVLGIADEDLLERIRKY 135 (138)
Q Consensus 115 ~~AaqIl~~~~~~l~~kl~~~ 135 (138)
-.|+-+|+++.--||+||++|
T Consensus 75 trAa~mLGinR~TLRKKLkqy 95 (98)
T COG2901 75 TRAALMLGINRGTLRKKLKKY 95 (98)
T ss_pred HHHHHHHcccHHHHHHHHHHh
Confidence 346678999999999999998
No 286
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=53.79 E-value=19 Score=22.98 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEE
Q 032570 7 LPVMNDAARTLSDFGVPYEIKIL 29 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~ 29 (138)
-+.+++++..|++.|++|+..-.
T Consensus 10 ~p~c~kv~~~L~~~gi~y~~~~~ 32 (77)
T cd03040 10 CPFCCKVRAFLDYHGIPYEVVEV 32 (77)
T ss_pred CHHHHHHHHHHHHCCCceEEEEC
Confidence 38899999999999999997643
No 287
>PRK15456 universal stress protein UspG; Provisional
Probab=53.19 E-value=78 Score=22.32 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=28.8
Q ss_pred CCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHH--------hhhccCCcEEEec
Q 032570 21 GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVP 79 (138)
Q Consensus 21 gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gv--------va~~t~~PVIgvP 79 (138)
+.+++.++.. -.| ..++.+.+++.+++.||.++-+.+ +... +.-+++.||+-|+
T Consensus 81 ~~~v~~~v~~--G~~--~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 81 PSRIKQHVRF--GSV--RDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142 (142)
T ss_pred CcceEEEEcC--CCh--HHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEEEeC
Confidence 3444544432 233 334555566778998887664433 3322 2235667776553
No 288
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=52.92 E-value=75 Score=25.98 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC
Q 032570 10 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 61 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a 61 (138)
.+-+....+++|++.-.+++.-.|+..++.+++..+...|++=|.++.|-..
T Consensus 47 ~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~ 98 (272)
T TIGR00676 47 VRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPP 98 (272)
T ss_pred HHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 3444444458899999999999999999999999998889998888888644
No 289
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=52.69 E-value=98 Score=23.31 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=38.7
Q ss_pred hCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh-HHhhhccCCcEEEe
Q 032570 20 FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-GVAAANSQILVIRV 78 (138)
Q Consensus 20 ~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~-gvva~~t~~PVIgv 78 (138)
.|.+.++.+.-..-.|+...+.+++..+++++++|...+.....+ .-.+.....|||..
T Consensus 37 ~g~~v~~~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~ 96 (298)
T cd06268 37 LGRKIELVVEDTQGDPEAAAAAARELVDDGVDAVIGPLSSGVALAAAPVAEEAGVPLISP 96 (298)
T ss_pred CCeEEEEEEecCCCCHHHHHHHHHHHHhCCceEEEcCCcchhHHhhHHHHHhCCCcEEcc
Confidence 456677788777777888888888887777888775443322211 12334567899865
No 290
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=52.57 E-value=92 Score=26.04 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=49.5
Q ss_pred HHHhCCCeEEEEE--ccCC--CchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 17 LSDFGVPYEIKIL--PPHQ--NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 17 L~~~gi~~~~~V~--SaHR--~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
+++||+... .+. +... +|+++.++++..+++++++|++=...+.-..-.++..|..+|+.+.+.
T Consensus 217 ~~~ygl~~~-~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldpl 284 (311)
T PRK09545 217 EKHYGLTPL-GHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVIESVAKGTSVRMGTLDPL 284 (311)
T ss_pred HHhCCCcee-eeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcCCeEEEeccc
Confidence 356777642 222 2333 679999999999999999999999999999999999999998877443
No 291
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=52.46 E-value=80 Score=22.21 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=35.3
Q ss_pred HHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCc---hhHH---hhhccCCcEEEecCCC
Q 032570 18 SDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH---LSGV---AAANSQILVIRVPLLS 82 (138)
Q Consensus 18 ~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~---L~gv---va~~t~~PVIgvP~~~ 82 (138)
+..|++.+..+. .+-.| ..++++.+++.+++.||.++-+ .. |.++ +.-++++||+-||...
T Consensus 75 ~~~~~~~~~~~~-~~G~p--~~~I~~~a~~~~~DLIV~Gs~~-~~~~~lgSva~~v~~~a~~pVLvv~~~~ 141 (144)
T PRK15118 75 TNAGYPITETLS-GSGDL--GQVLVDAIKKYDMDLVVCGHHQ-DFWSKLMSSARQLINTVHVDMLIVPLRD 141 (144)
T ss_pred HhCCCCceEEEE-EecCH--HHHHHHHHHHhCCCEEEEeCcc-cHHHHHHHHHHHHHhhCCCCEEEecCCc
Confidence 456766532222 12233 4556677777789988886543 22 2222 2346889999999753
No 292
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=52.43 E-value=31 Score=24.43 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHHh
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSA 45 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~S-aHR~p~~~~~~~~~~ 45 (138)
.=+.|+++.+.|++.|++|+.+=.. -+-+.+++.++++..
T Consensus 9 ~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 9 SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 3468999999999999998865543 333456666666543
No 293
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=52.33 E-value=66 Score=21.22 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=34.2
Q ss_pred HhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh--------HHhhhccCCcEEEec
Q 032570 19 DFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS--------GVAAANSQILVIRVP 79 (138)
Q Consensus 19 ~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~--------gvva~~t~~PVIgvP 79 (138)
..+..........-...+.+.++ .+..+++.+|.++-....+. --+.-+++.||+-||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 75 AEGGIVIEVVIESGDVADAIIEF---AEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp HHTTSEEEEEEEESSHHHHHHHH---HHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred hhccceeEEEEEeeccchhhhhc---cccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 34555555555444444555444 44567898887765533333 234457889998876
No 294
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.28 E-value=25 Score=29.72 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=32.9
Q ss_pred EEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 27 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 27 ~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
.|...|..+..+.++.+ .++++|+++|...-+.+=.--. -.=||-|=+.
T Consensus 183 tVtichs~T~~l~~~~~-----~ADIvI~AvG~~~~i~~~~vk~-GavVIDvGin 231 (284)
T PRK14170 183 TVTIAHSRTKDLPQVAK-----EADILVVATGLAKFVKKDYIKP-GAIVIDVGMD 231 (284)
T ss_pred EEEEeCCCCCCHHHHHh-----hCCEEEEecCCcCccCHHHcCC-CCEEEEccCc
Confidence 56666888888888775 4799999999988766422111 1226666655
No 295
>PLN02564 6-phosphofructokinase
Probab=52.01 E-value=29 Score=31.57 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=37.1
Q ss_pred EEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHH--hhh-----ccCCcEEEecCC
Q 032570 28 ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--AAA-----NSQILVIRVPLL 81 (138)
Q Consensus 28 V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gv--va~-----~t~~PVIgvP~~ 81 (138)
+.+--|.+....+++++.++.+++.+|++-|- +.+-+. ++- ...++|||+|-.
T Consensus 155 iLGTsR~~~~~~~iv~~L~~~~Id~LivIGGD-GS~~gA~~L~e~~~~~g~~i~VIGIPKT 214 (484)
T PLN02564 155 ILGTSRGGHDTSKIVDSIQDRGINQVYIIGGD-GTQKGASVIYEEIRRRGLKVAVAGIPKT 214 (484)
T ss_pred eeccCCCcchHHHHHHHHHHhCCCEEEEECCc-hHHHHHHHHHHHHHHcCCCceEEEeccc
Confidence 45555888888899999999999998888664 333332 221 234559999985
No 296
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=51.64 E-value=66 Score=27.24 Aligned_cols=50 Identities=6% Similarity=0.134 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccC-------------CCch-HHHHHHHHhhhcCCeEEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPH-------------QNCK-EALSYALSAKERGIKIIIVG 56 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaH-------------R~p~-~~~~~~~~~~~~~~~viIa~ 56 (138)
.+.+++..+.+++.+||+|+-+.-.+ |-|+ +..+++++.+++|.++++-+
T Consensus 23 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 23 VDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 45567777888999999998777643 5565 23677788888899977754
No 297
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=51.60 E-value=45 Score=29.08 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEecCC
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRVPLL 81 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgvP~~ 81 (138)
|.+.+.+.. +.||. .+.+.++.-.......-++++.++|++|+|.+|=-+..|+.++.. .--.|||+.=..
T Consensus 43 D~~~~~~~~---e~~g~--k~~~q~A~~~~~~Q~~qien~i~qg~~vlvi~a~d~~~l~~~i~~A~~~gikViaYDRl 115 (341)
T COG4213 43 DRDAFVKKA---EALGA--KVDVQSADGDEEKQLAQIENMINQGVKVLVIGAIDGGVLSNAVEKAKSEGIKVIAYDRL 115 (341)
T ss_pred hhHHHHHHH---Hhccc--hhhhhhhccChhHHHHHHHHHHhcCCCEEEEEeccchhHHHHHHHHHHcCCeEEEeecc
Confidence 555555544 45554 566777877777777777889999999999999999999999864 578999997544
No 298
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.59 E-value=25 Score=29.68 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=34.1
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
..|...|+.++.+.++.+ .++++|+++|...-+.+=.--. -.=||-|=+.
T Consensus 182 atVt~chs~T~nl~~~~~-----~ADIvIsAvGkp~~i~~~~vk~-GavVIDvGin 231 (282)
T PRK14166 182 ATVSVCHIKTKDLSLYTR-----QADLIIVAAGCVNLLRSDMVKE-GVIVVDVGIN 231 (282)
T ss_pred CEEEEeCCCCCCHHHHHh-----hCCEEEEcCCCcCccCHHHcCC-CCEEEEeccc
Confidence 467778998888888764 4799999999988765433211 1226666654
No 299
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=51.52 E-value=36 Score=25.81 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=46.7
Q ss_pred CCCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCc----hH----------HHHHHHHhhhcCCeEEEEecCcC-CchhH
Q 032570 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNC----KE----------ALSYALSAKERGIKIIIVGDGVE-AHLSG 65 (138)
Q Consensus 1 mGS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p----~~----------~~~~~~~~~~~~~~viIa~AG~~-a~L~g 65 (138)
|+..++..+.++..+.+.....+ ++.+.+..+.| +. +.+.++..++.++++|+..-... ..+..
T Consensus 4 i~p~~~~~~~~~l~~~~~~~~~~-~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~g~d~i~i~C~s~~~~~~~ 82 (216)
T PF01177_consen 4 ISPNSNLTVERELRRMLPAREGQ-EVYFHDTRGFPDRIKEEDAGMSAILDRLIEAAEKLEKAGVDAIVIACNSAHPFVDE 82 (216)
T ss_dssp ESSSTTHHHHHHHHHHSTTSCCT-EEEEEETTTSCTSHHHHHHHHHHHHHHHHHHHHHHHHTTESEEEESSHHHHHHHHH
T ss_pred EEchHHHHHHHHHHHHhccccCC-EEEEEeCCCCCCccHHHhcchHHHHHHHHHHHHHHHhCCCCEEEEcCCchhhhHHH
Confidence 46678999999998888765544 66666555233 33 22222444556888665543322 23333
Q ss_pred HhhhccCCcEEEecC
Q 032570 66 VAAANSQILVIRVPL 80 (138)
Q Consensus 66 vva~~t~~PVIgvP~ 80 (138)
.-...+..||++..-
T Consensus 83 ~~~~~~~iPv~~~~~ 97 (216)
T PF01177_consen 83 LRKERVGIPVVGIVE 97 (216)
T ss_dssp HHHHHHSSEEEESHH
T ss_pred HhhhcCceEEEeccH
Confidence 332667999999433
No 300
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.17 E-value=22 Score=29.82 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHH-HhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEecC
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL-SAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRVPL 80 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~-~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgvP~ 80 (138)
....+.++++.+.|++.|+.+.+.-......+..-..+.+ ....++++++|++ |+.+-+-.++.. ....||+|+.+
T Consensus 16 ~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~-GGDGt~l~~~~~~~~~~~Pvlgin~ 94 (295)
T PRK01231 16 SSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVV-GGDGSLLGAARALARHNVPVLGINR 94 (295)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEE-eCcHHHHHHHHHhcCCCCCEEEEeC
Confidence 3445678888888888888765532211111100001111 1112357777665 445545444432 46889999987
Q ss_pred C
Q 032570 81 L 81 (138)
Q Consensus 81 ~ 81 (138)
-
T Consensus 95 G 95 (295)
T PRK01231 95 G 95 (295)
T ss_pred C
Confidence 4
No 301
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=50.84 E-value=63 Score=27.57 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 61 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a 61 (138)
+.|.+++++|.++-+++|+|..=..++=-..|+.+.++++++ .++++ ++.|-.+
T Consensus 111 DGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~---~PDIl-ViTGHD~ 164 (283)
T TIGR02855 111 DGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEV---RPDIL-VITGHDA 164 (283)
T ss_pred cCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHh---CCCEE-EEeCchh
Confidence 579999999999999999998777777889999999999765 35543 3445443
No 302
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=50.71 E-value=47 Score=23.45 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHH
Q 032570 8 PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALS 44 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~ 44 (138)
+.|++|.+.|++.|++|+++ +..--=+.+++.++++.
T Consensus 10 ~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 10 DTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred HHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 57899999999999999865 44444466777777653
No 303
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.24 E-value=27 Score=29.50 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=32.4
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
..|...|..+..+.++.+ .++++|++.|...-+.+=.--. -.=||-|=+.
T Consensus 181 atVtichs~T~~l~~~~~-----~ADIvI~AvG~p~~i~~~~vk~-GavVIDvGin 230 (282)
T PRK14169 181 ATVTIAHSKTRNLKQLTK-----EADILVVAVGVPHFIGADAVKP-GAVVIDVGIS 230 (282)
T ss_pred CEEEEECCCCCCHHHHHh-----hCCEEEEccCCcCccCHHHcCC-CcEEEEeecc
Confidence 366677877777877764 4799999999988765422111 1126666554
No 304
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=50.19 E-value=54 Score=26.98 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc-------cCCCchHHHHHHHHhhhcCCeEEEEecCcCCc
Q 032570 8 PVMNDAARTLSDFGVPYEIKILP-------PHQNCKEALSYALSAKERGIKIIIVGDGVEAH 62 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~S-------aHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~ 62 (138)
+..+++.+.|+++|....+.=.. +...-+|..++.+-..+..++.|++.-|+.++
T Consensus 14 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga 75 (282)
T cd07025 14 ERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGA 75 (282)
T ss_pred HHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCH
Confidence 88999999999999864432111 12223455556555567789999999998664
No 305
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=50.05 E-value=41 Score=24.10 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEE
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 55 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa 55 (138)
++..+.+++.+++ ++-|+-.....+++.++++..++.+++|.++
T Consensus 131 ~~l~~~~~~~~id-~v~ial~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 131 DDLPELVREHDID-EVIIALPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp GGHHHHHHHHT---EEEE--TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred HHHHHHHHhCCCC-EEEEEcCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 4555666777776 6777766666777888888887777777653
No 306
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.98 E-value=28 Score=29.46 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=32.4
Q ss_pred EEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 27 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 27 ~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
.|...|+.+..+.++.+ .++++|++.|..+-+.+=.-- --.=||-|=+.
T Consensus 181 TVtichs~T~~l~~~~~-----~ADIvIsAvGkp~~i~~~~vk-~GavVIDVGin 229 (287)
T PRK14173 181 TVTLAHSKTQDLPAVTR-----RADVLVVAVGRPHLITPEMVR-PGAVVVDVGIN 229 (287)
T ss_pred EEEEeCCCCCCHHHHHh-----hCCEEEEecCCcCccCHHHcC-CCCEEEEccCc
Confidence 56666888888877764 479999999999877543221 11226665554
No 307
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=49.83 E-value=68 Score=20.66 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCc
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 59 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~ 59 (138)
..+.+.+.+....|+.-|+.+++-.. .+.+.+-.++ +...|+..+|.+...
T Consensus 11 ~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~~~~---a~~~g~~~~iiig~~ 61 (91)
T cd00860 11 DEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKKIRE---AQLQKIPYILVVGDK 61 (91)
T ss_pred chHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHH---HHHcCCCEEEEECcc
Confidence 34567788888888888987776442 3555555555 446688877766644
No 308
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=49.78 E-value=49 Score=28.24 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 61 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a 61 (138)
+.|.+++++|.++-+++|||..=..++=-..|+.+.++++++ .++++ ++.|-.+
T Consensus 112 DGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~---~PDIl-ViTGHD~ 165 (287)
T PF05582_consen 112 DGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEY---RPDIL-VITGHDG 165 (287)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHc---CCCEE-EEeCchh
Confidence 579999999999999999998777777888999999998765 45543 3444443
No 309
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=49.75 E-value=1.4e+02 Score=24.35 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHH-hCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEE
Q 032570 6 DLPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 55 (138)
Q Consensus 6 D~~~~~~~~~~L~~-~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa 55 (138)
|.+...++.+..++ ..+|.-+++.. +.+++.++++.+++.|++.|++
T Consensus 141 ~~~~~~eiv~~vr~~~~~pv~vKl~~---~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 141 DPELAYEVVKAVKEVVKVPVIVKLTP---NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCC---CchhHHHHHHHHHHcCCCEEEE
Confidence 34455555555543 36666666642 3345666666666666665554
No 310
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=49.74 E-value=27 Score=32.58 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=33.7
Q ss_pred CchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhh-----ccCCcEEEecCC
Q 032570 34 NCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-----NSQILVIRVPLL 81 (138)
Q Consensus 34 ~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~-----~t~~PVIgvP~~ 81 (138)
+++...+.+++.++.+++.+|.+-|-... -+-.++- ....+|||||-.
T Consensus 158 ~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKT 211 (610)
T PLN03028 158 TTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVT 211 (610)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEecee
Confidence 45677778888888889988888776432 2223332 348999999986
No 311
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=49.70 E-value=74 Score=26.65 Aligned_cols=49 Identities=14% Similarity=-0.009 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcC
Q 032570 12 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60 (138)
Q Consensus 12 ~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~ 60 (138)
-+...+++.|++.-.++..-.|+..++.+.+..+...|++=|.++.|=-
T Consensus 73 ~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~ 121 (296)
T PRK09432 73 IIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDL 121 (296)
T ss_pred HHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3445558899999999999999999999999999888999888888873
No 312
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=49.69 E-value=1.7e+02 Score=26.18 Aligned_cols=122 Identities=11% Similarity=0.193 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHH--HHHHHh---hhcCCeEEEEecCcCCchhHHhhhccCCcEEE
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEAL--SYALSA---KERGIKIIIVGDGVEAHLSGVAAANSQILVIR 77 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~Sa---HR~p~~~~--~~~~~~---~~~~~~viIa~AG~~a~L~gvva~~t~~PVIg 77 (138)
+.+..+.+.+.+++++..+-.+...- +..|+.+. +++-+. ....+++||.=.|...-.-++ ..-+|+|+
T Consensus 313 ~~~~~~~~l~a~~~l~~~viw~~~~~~~~~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal---~~GvP~v~ 389 (507)
T PHA03392 313 DNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAI---DALVPMVG 389 (507)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCCcCcccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHH---HcCCCEEE
Confidence 45688889999999887543333321 13344443 232111 123578999977765444433 46789999
Q ss_pred ecCCCCCCCchhhhhhhcCCCCCeeeEEecCCchhHHHHHHHHHcc-CCHHHHHHHHHHH
Q 032570 78 VPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI-ADEDLLERIRKYV 136 (138)
Q Consensus 78 vP~~~~~~~G~dLlS~lqmP~GvpvatV~I~~~~nAA~~AaqIl~~-~~~~l~~kl~~~~ 136 (138)
+|.......-...+ .+ .|+++. +.. +..++..+...|-.+ .|+..+++.+..+
T Consensus 390 iP~~~DQ~~Na~rv--~~--~G~G~~-l~~-~~~t~~~l~~ai~~vl~~~~y~~~a~~ls 443 (507)
T PHA03392 390 LPMMGDQFYNTNKY--VE--LGIGRA-LDT-VTVSAAQLVLAIVDVIENPKYRKNLKELR 443 (507)
T ss_pred CCCCccHHHHHHHH--HH--cCcEEE-ecc-CCcCHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99986432222211 12 365542 222 233444444444333 5788887766554
No 313
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=49.69 E-value=27 Score=31.01 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhhcCCeEEEEecCcCCchhH-Hhhh-----ccCCcEEEecCC
Q 032570 36 KEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA-----NSQILVIRVPLL 81 (138)
Q Consensus 36 ~~~~~~~~~~~~~~~~viIa~AG~~a~L~g-vva~-----~t~~PVIgvP~~ 81 (138)
+...+.+++.++.+++.+|++-|-...-.. -++- ...+||||+|-.
T Consensus 99 ~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkT 150 (403)
T PRK06555 99 NPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKT 150 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeee
Confidence 346677888889999999998776433222 2322 237999999975
No 314
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=49.64 E-value=61 Score=20.04 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHH
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 40 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~ 40 (138)
+.=+.|+++...|++.|++|+. ....+.++...+
T Consensus 8 ~~C~~C~~~~~~L~~~~~~~~~--idi~~~~~~~~~ 41 (77)
T TIGR02200 8 TWCGYCAQLMRTLDKLGAAYEW--VDIEEDEGAADR 41 (77)
T ss_pred CCChhHHHHHHHHHHcCCceEE--EeCcCCHhHHHH
Confidence 4457899999999999999864 335555544433
No 315
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=49.34 E-value=57 Score=21.09 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHH
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 44 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~ 44 (138)
-++.+.-.|+..|++|+....+.....++..+|.+.
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~ 46 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAI 46 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhc
Confidence 356788899999999999888875555444555543
No 316
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.32 E-value=99 Score=24.26 Aligned_cols=70 Identities=9% Similarity=0.039 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
.+.+.+.+.++++|+.+.+. ...--.++...++++....++++.||............+.- ....|||.+
T Consensus 16 ~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 16 AQVRGAKDEFAKLGIEVVAT-TDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred HHHHHHHHHHHHcCCEEEEe-cCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHHcCCcEEEe
Confidence 56667778888998755422 12223566666777777667789777755333333444432 345688765
No 317
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=49.28 E-value=1.4e+02 Score=24.95 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHH-hhhcCCeEEEEe----cCcCCchhHHhhhccCCcEEEec
Q 032570 11 NDAARTLSDFGVPYEIKILP---PHQNCKEALSYALS-AKERGIKIIIVG----DGVEAHLSGVAAANSQILVIRVP 79 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~S---aHR~p~~~~~~~~~-~~~~~~~viIa~----AG~~a~L~gvva~~t~~PVIgvP 79 (138)
+++...+=.+|+.--+.|.. .+-.|..+-+.+.. .++.+++.|+++ .|-++++|..+|.+..+|++.-=
T Consensus 69 ~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v 145 (260)
T COG2086 69 EEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYV 145 (260)
T ss_pred HHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeE
Confidence 33333344566664455552 34444445454433 345678877754 56789999999999999999743
No 318
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=49.27 E-value=46 Score=20.90 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPH 32 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaH 32 (138)
+.+.++.-.|++.|++|+.......
T Consensus 11 ~~s~~v~~~l~~~~i~~~~~~~~~~ 35 (76)
T cd03053 11 TCVRRVLLCLEEKGVDYELVPVDLT 35 (76)
T ss_pred hhHHHHHHHHHHcCCCcEEEEeCcc
Confidence 5688999999999999998877654
No 319
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=49.22 E-value=86 Score=21.65 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEec
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 57 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~A 57 (138)
..+++.+.|++.|+++++.=++. .++..++ +++++|++..
T Consensus 19 ~~~ki~~~l~~~gi~~~v~~~~~----~e~~~~~-----~~~D~iv~t~ 58 (94)
T PRK10310 19 AAEEIKELCQSHNIPVELIQCRV----NEIETYM-----DGVHLICTTA 58 (94)
T ss_pred HHHHHHHHHHHCCCeEEEEEecH----HHHhhhc-----CCCCEEEECC
Confidence 35889999999999988655444 3443332 4578888754
No 320
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.15 E-value=56 Score=27.65 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+++...+.++++||.+++.-.+..-+.+++.+.+++..+ ...+=||+
T Consensus 45 ~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlv 96 (296)
T PRK14188 45 ASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILV 96 (296)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEE
Confidence 4556777788899999999999999999999999999988754 34555554
No 321
>PRK14072 6-phosphofructokinase; Provisional
Probab=49.12 E-value=25 Score=31.00 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=33.6
Q ss_pred CchHHHHHHHHhhhcCCeEEEEecCcCCchhHH--hhh-----ccCCcEEEecCC
Q 032570 34 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--AAA-----NSQILVIRVPLL 81 (138)
Q Consensus 34 ~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gv--va~-----~t~~PVIgvP~~ 81 (138)
+++...+.+++.++.+++.+|++-|- +.+.+. ++- ...+||||||-.
T Consensus 88 ~~~~~~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~e~~~~~g~~i~vIgIPkT 141 (416)
T PRK14072 88 DRAEYERLLEVFKAHDIGYFFYNGGN-DSMDTALKVSQLAKKMGYPIRCIGIPKT 141 (416)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEECCh-HHHHHHHHHHHHHHHhCCCceEEEeeec
Confidence 45678888899999999999988664 333333 222 234899999986
No 322
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=49.10 E-value=86 Score=21.63 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCc---------------------hH---HHHHHHHhhhcCCeEEEEecCcC
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNC---------------------KE---ALSYALSAKERGIKIIIVGDGVE 60 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p---------------------~~---~~~~~~~~~~~~~~viIa~AG~~ 60 (138)
++..+..+-.+.|.+.|.+ +.|.+.+..- -. ..++.+..++.++||+.+-....
T Consensus 8 ~~~~~~~~~~~~L~~~g~~--V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~DvIh~h~~~~ 85 (139)
T PF13477_consen 8 TPSTFIYNLAKELKKRGYD--VHIITPRNDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEKPDVIHCHTPSP 85 (139)
T ss_pred CcHHHHHHHHHHHHHCCCE--EEEEEcCCCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCCCCEEEEecCCh
Confidence 4566777777778877663 3333332221 11 12333445667899999988776
Q ss_pred CchhHHhhh-ccC-CcEE
Q 032570 61 AHLSGVAAA-NSQ-ILVI 76 (138)
Q Consensus 61 a~L~gvva~-~t~-~PVI 76 (138)
..+-+.+++ .+. .|+|
T Consensus 86 ~~~~~~l~~~~~~~~~~i 103 (139)
T PF13477_consen 86 YGLFAMLAKKLLKNKKVI 103 (139)
T ss_pred HHHHHHHHHHHcCCCCEE
Confidence 566555554 455 7888
No 323
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=49.00 E-value=72 Score=23.59 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=31.3
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEE
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 55 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa 55 (138)
+|..|....++....|+++|++..+=--.+.....-++++.+...+-++-||+.
T Consensus 5 vhg~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~ 58 (125)
T PF10137_consen 5 VHGRDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLF 58 (125)
T ss_pred EeCCCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEE
Confidence 455799999999999999998755433333333333333433333334444443
No 324
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=48.87 E-value=80 Score=26.48 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEc---------------------cCCCchHHHHHHHHhhhcCCeEEEEe
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILP---------------------PHQNCKEALSYALSAKERGIKIIIVG 56 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~S---------------------aHR~p~~~~~~~~~~~~~~~~viIa~ 56 (138)
....+++..+.+++.+||+|+-+.- .+|-|+ ..+++++.+++|.++++-+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYI 91 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEe
Confidence 3455688888899999999976552 224454 5688888888999977655
No 325
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=48.83 E-value=29 Score=31.88 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=33.6
Q ss_pred CCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhh-----ccCCcEEEecCC
Q 032570 33 QNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-----NSQILVIRVPLL 81 (138)
Q Consensus 33 R~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~-----~t~~PVIgvP~~ 81 (138)
++++...+.+++.++.+++.+|.+-|-... -+-.++- ....||||||-.
T Consensus 145 ~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkT 199 (539)
T TIGR02477 145 ETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKT 199 (539)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 456677778888888888888877665322 2223332 357999999986
No 326
>PRK00430 fis global DNA-binding transcriptional dual regulator Fis; Provisional
Probab=48.71 E-value=15 Score=25.91 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=18.6
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 032570 116 YAVKVLGIADEDLLERIRKYV 136 (138)
Q Consensus 116 ~AaqIl~~~~~~l~~kl~~~~ 136 (138)
-|+++|+++...+|.||+.|.
T Consensus 73 ~AAr~LGIsRsTL~rKLkr~g 93 (95)
T PRK00430 73 RAALMLGINRGTLRKKLKKYG 93 (95)
T ss_pred HHHHHhCCCHHHHHHHHHHhC
Confidence 468999999999999999874
No 327
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=48.67 E-value=54 Score=26.62 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=49.8
Q ss_pred HHHhCCCeEEEEE----ccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCC
Q 032570 17 LSDFGVPYEIKIL----PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 17 L~~~gi~~~~~V~----SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
+++||+.. +.+. ..=-+|.++.++++..+++++++|+.=...+....-.++-.+..||+.+++..
T Consensus 185 ~~~~gl~~-~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l~ 253 (282)
T cd01017 185 ARRYGLKQ-IAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLLVLNPLE 253 (282)
T ss_pred HHHCCCeE-EecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEecccc
Confidence 35677663 2222 12346788999999999999999999999999999999989999998776543
No 328
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=48.43 E-value=1.3e+02 Score=23.45 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCC--CchHHHHHHHHhhhcCCeEEEEecC
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQ--NCKEALSYALSAKERGIKIIIVGDG 58 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR--~p~~~~~~~~~~~~~~~~viIa~AG 58 (138)
..+.+.+.++++|+.+.+.....+. .++...++++++..++++.||....
T Consensus 18 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~ 69 (280)
T cd06303 18 NIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLD 69 (280)
T ss_pred HHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3456677788899766655443333 5677777888888888998887654
No 329
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=48.22 E-value=39 Score=21.31 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPH 32 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaH 32 (138)
+...++.-.|++.|++|++......
T Consensus 10 ~~~~~v~~~L~~~~l~~~~~~~~~~ 34 (73)
T cd03047 10 INVQKVLWLLDELGLPYERIDAGGQ 34 (73)
T ss_pred cchHHHHHHHHHcCCCCEEEEeccc
Confidence 3467888899999999998766543
No 330
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.20 E-value=56 Score=27.60 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+.+...+.++++||.++..-.+...+.+++.+.+++..+ ...+=||.
T Consensus 44 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (285)
T PRK14191 44 ASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILV 95 (285)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4566788888999999999999999999999999999988854 34554554
No 331
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.19 E-value=63 Score=27.29 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEEe
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIVG 56 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa~ 56 (138)
.++.-+.+...+.++++|+.|+..-.+..-+.+++.+.+++..+ ...+=||+-
T Consensus 44 ~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq 97 (285)
T PRK14189 44 PASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQ 97 (285)
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEe
Confidence 35566788888999999999999999999999999999988754 344445553
No 332
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=47.86 E-value=72 Score=25.30 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecC
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 58 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG 58 (138)
+-..+.+++.+.+++- ++++.+.-.....+++.+.++++.++|.+|.+.+-|
T Consensus 7 g~~~I~~~i~elI~~A--e~eI~is~~~~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 7 GRETILERIRELIENA--ESEIYISIPPEFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp SHHHHHHHHHHHHHC---SSEEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CHHHHHHHHHHHHHHh--heEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 3456677788877754 457777777778888888888889999999999999
No 333
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=47.65 E-value=90 Score=24.98 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=28.8
Q ss_pred HHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEec
Q 032570 16 TLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 57 (138)
Q Consensus 16 ~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~A 57 (138)
.-+++|+++++.-.. . .++...+.++++.++++++||+..
T Consensus 26 ~~~~~gv~~~~~e~~-~-~~~~~~~~i~~~~~~g~dlIi~~g 65 (258)
T cd06353 26 AEKALGVEVTYVENV-P-EGADAERVLRELAAQGYDLIFGTS 65 (258)
T ss_pred HHHhcCCeEEEEecC-C-chHhHHHHHHHHHHcCCCEEEECc
Confidence 334688876665433 2 678888888888888999999844
No 334
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=47.57 E-value=32 Score=31.67 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=33.5
Q ss_pred CCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhh-----ccCCcEEEecCC
Q 032570 33 QNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-----NSQILVIRVPLL 81 (138)
Q Consensus 33 R~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~-----~t~~PVIgvP~~ 81 (138)
++++...+.++..++.+++.+|.+-|-... -+..++- ....+|||||-.
T Consensus 150 ~~~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKT 204 (550)
T cd00765 150 ETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKT 204 (550)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 456777788888888888888887775332 2222332 356899999986
No 335
>smart00642 Aamy Alpha-amylase domain.
Probab=47.56 E-value=87 Score=23.79 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.0
Q ss_pred CchHHHHHHHHhhhcCCeEEE
Q 032570 34 NCKEALSYALSAKERGIKIII 54 (138)
Q Consensus 34 ~p~~~~~~~~~~~~~~~~viI 54 (138)
+.+++.++++.+.++|.+|++
T Consensus 68 t~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEE
Confidence 458899999999999999884
No 336
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=47.50 E-value=29 Score=31.95 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=33.6
Q ss_pred CCchHHHHHHHHhhhcCCeEEEEecCcCCc-hhHHhhh-----ccCCcEEEecCC
Q 032570 33 QNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-----NSQILVIRVPLL 81 (138)
Q Consensus 33 R~p~~~~~~~~~~~~~~~~viIa~AG~~a~-L~gvva~-----~t~~PVIgvP~~ 81 (138)
++++...+.+++.++.+++.+|.+-|-... -+-.++- ....||||||-.
T Consensus 148 ~~~e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkT 202 (555)
T PRK07085 148 ETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKT 202 (555)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence 456778888888888888988877665322 1222322 358999999986
No 337
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.36 E-value=70 Score=27.10 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
.++.-+++...+.++++|+.++....+..-+.+++.+.+++..+ ...+=||.
T Consensus 50 ~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlv 102 (287)
T PRK14176 50 PASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILL 102 (287)
T ss_pred cchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 35667788888999999999999999999999999999988854 34454554
No 338
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=47.16 E-value=45 Score=20.98 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc
Q 032570 8 PVMNDAARTLSDFGVPYEIKILP 30 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~S 30 (138)
+.+.++.-.|++.|++||..-..
T Consensus 10 p~~~~v~~~l~~~gl~~~~~~~~ 32 (74)
T cd03058 10 PFVLRVRIALALKGVPYEYVEED 32 (74)
T ss_pred chHHHHHHHHHHcCCCCEEEEeC
Confidence 67889999999999999876443
No 339
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=47.14 E-value=1.8e+02 Score=24.87 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=58.8
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHH--------Hhhhc---C-CeEEEEecCcCCchhHHhhhc
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL--------SAKER---G-IKIIIVGDGVEAHLSGVAAAN 70 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~--------~~~~~---~-~~viIa~AG~~a~L~gvva~~ 70 (138)
.+++.+.++.+.+..+++|++.++++.= +.++.....+ .+... + -.+++-+--.+-.=--.++ .
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~v~iH~~E---~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~-~ 268 (421)
T COG0402 193 YTVSPELLESLDELARKYGLPVHIHLAE---TLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLA-E 268 (421)
T ss_pred CCCCHHHHHHHHHHHhcCCCceEEEecC---cHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHh-h
Confidence 3678888999999999999999998763 3333333333 11111 1 2344443333333334454 8
Q ss_pred cCCcEEEecCCCCCCC-chh-hhhhhcCCCCCeeeEEe
Q 032570 71 SQILVIRVPLLSEDWS-EDD-VINSIRMPSHVQVASVP 106 (138)
Q Consensus 71 t~~PVIgvP~~~~~~~-G~d-LlS~lqmP~GvpvatV~ 106 (138)
+...|+.||.++..++ |+- +..++. .|+.++...
T Consensus 269 ~g~~v~~cP~sN~~L~sG~~p~~~~~~--~gv~v~~gT 304 (421)
T COG0402 269 SGASVVHCPRSNLKLGSGIAPVRRLLE--RGVNVALGT 304 (421)
T ss_pred CCCeEEECcchhccccCCCCCHHHHHH--cCCCEEEec
Confidence 8899999999987664 433 555544 565554443
No 340
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=46.95 E-value=83 Score=22.53 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCe-EEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcC----CchhHHhhhc--cCCcEEEecCCC
Q 032570 12 DAARTLSDFGVPY-EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE----AHLSGVAAAN--SQILVIRVPLLS 82 (138)
Q Consensus 12 ~~~~~L~~~gi~~-~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~----a~L~gvva~~--t~~PVIgvP~~~ 82 (138)
-..+.|+++|... +..++. -.++.+.+.+++..+ .++++|+..|.+ ...+-++... ..+|..+++...
T Consensus 22 ~l~~~l~~~G~~~~~~~~v~--Dd~~~I~~~l~~~~~-~~dliittGG~g~g~~D~t~~~l~~~~~~~~~~~~~~~~P 96 (135)
T smart00852 22 ALAELLTELGIEVTRYVIVP--DDKEAIKEALREALE-RADLVITTGGTGPGPDDVTPEAVAEALGKELPGFGEAMRP 96 (135)
T ss_pred HHHHHHHHCCCeEEEEEEeC--CCHHHHHHHHHHHHh-CCCEEEEcCCCCCCCCcCcHHHHHHHhCCcCCChhhhhcc
Confidence 3456689999875 344443 556666666655544 478888776543 4566666654 367777777654
No 341
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=46.90 E-value=95 Score=25.09 Aligned_cols=54 Identities=26% Similarity=0.190 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 61 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a 61 (138)
....-+...+++.|++.-.+++.-.|+..++.+.+..+...|++=+.++.|=..
T Consensus 45 ~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~ 98 (274)
T cd00537 45 MTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPP 98 (274)
T ss_pred hHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCC
Confidence 344556666777889999999999999999999999998889997788777543
No 342
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=46.80 E-value=1.7e+02 Score=24.63 Aligned_cols=102 Identities=14% Similarity=0.186 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHH-HhCCCeEEEEEccCC-CchHHHHHHHHhhhcCCeEEEEecCcC--CchhH--------HhhhccC
Q 032570 5 LDLPVMNDAARTLS-DFGVPYEIKILPPHQ-NCKEALSYALSAKERGIKIIIVGDGVE--AHLSG--------VAAANSQ 72 (138)
Q Consensus 5 SD~~~~~~~~~~L~-~~gi~~~~~V~SaHR-~p~~~~~~~~~~~~~~~~viIa~AG~~--a~L~g--------vva~~t~ 72 (138)
.|.+.++++.+.+. ..++|..+++-.-+. ......++++.+++.|++.|.+- |+. ....| -+.-.+.
T Consensus 116 ~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh-~rt~~~~~~G~a~~~~i~~ik~~~~ 194 (321)
T PRK10415 116 QYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIH-GRTRACLFNGEAEYDSIRAVKQKVS 194 (321)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEe-cCccccccCCCcChHHHHHHHHhcC
Confidence 36677777777774 467777766643222 23357788888888888877544 332 11111 2233577
Q ss_pred CcEEEecCCCCCC-CchhhhhhhcC--CCCCeeeEEecCCch
Q 032570 73 ILVIRVPLLSEDW-SEDDVINSIRM--PSHVQVASVPRNNAK 111 (138)
Q Consensus 73 ~PVIgvP~~~~~~-~G~dLlS~lqm--P~GvpvatV~I~~~~ 111 (138)
.|||+ +++. +.-|...+++. ..||-++.-.+.||.
T Consensus 195 iPVI~----nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~ 232 (321)
T PRK10415 195 IPVIA----NGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 (321)
T ss_pred CcEEE----eCCCCCHHHHHHHHhccCCCEEEEChHhhcCCh
Confidence 89998 3333 33335555543 445555555555665
No 343
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.75 E-value=36 Score=28.73 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCe-------------------------EEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchh
Q 032570 10 MNDAARTLSDFGVPY-------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 64 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~-------------------------~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~ 64 (138)
.+-+.+.|+.+|++. ...|...|..+..+.++.+ .++++|++.|...-+.
T Consensus 142 p~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~-----~ADIvI~AvG~p~~i~ 216 (284)
T PRK14190 142 PHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTK-----QADILIVAVGKPKLIT 216 (284)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHH-----hCCEEEEecCCCCcCC
Confidence 345667778887753 1356667888888877764 4799999999887554
Q ss_pred H
Q 032570 65 G 65 (138)
Q Consensus 65 g 65 (138)
+
T Consensus 217 ~ 217 (284)
T PRK14190 217 A 217 (284)
T ss_pred H
Confidence 3
No 344
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.72 E-value=82 Score=25.83 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCc-hHHHHHHHHhhhcCCeEEEEecCcCCchhH
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNC-KEALSYALSAKERGIKIIIVGDGVEAHLSG 65 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p-~~~~~~~~~~~~~~~~viIa~AG~~a~L~g 65 (138)
+.+.++.+..++.|+...+.+.-+.|.| +.+.++++.+.+-|++.|.-.-=.-...|-
T Consensus 112 ~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~ 170 (262)
T cd07948 112 ESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPR 170 (262)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHH
Confidence 3355555666788998888888899997 788888888877788865444333333343
No 345
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.37 E-value=36 Score=28.71 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=26.1
Q ss_pred EEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhH
Q 032570 27 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 65 (138)
Q Consensus 27 ~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~g 65 (138)
.|...|...+.+.++.+ .++++|++.|...-+.+
T Consensus 183 tVti~hs~T~~l~~~~~-----~ADIvV~AvGkp~~i~~ 216 (281)
T PRK14183 183 TVDICHIFTKDLKAHTK-----KADIVIVGVGKPNLITE 216 (281)
T ss_pred EEEEeCCCCcCHHHHHh-----hCCEEEEecCcccccCH
Confidence 55566877777877764 47999999999887664
No 346
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=46.32 E-value=35 Score=29.24 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCC---------chHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEec
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQN---------CKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVP 79 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~---------p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP 79 (138)
+++.+.|+.+|++|.. .+-|.. +++..++.+...+..++++|+..+.++.. +|-....|+|.+-
T Consensus 38 ~~~~~LL~~yg~~y~~--iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s~~a~~---va~~lgiP~I~f~ 110 (335)
T PF04007_consen 38 DETEELLDLYGIDYIV--IGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAISFGSPEAAR---VAFGLGIPSIVFN 110 (335)
T ss_pred chHHHHHHHcCCCeEE--EcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEecCcHHHHH---HHHHhCCCeEEEe
Confidence 4567889999998764 334442 23334444445556799999765555433 3445677888653
No 347
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.23 E-value=61 Score=27.35 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhc-CCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~-~~~viIa 55 (138)
++.-+.+...+.++++||.+++.-.+..-+.+++.+.+++..++ ..+=||.
T Consensus 45 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 96 (284)
T PRK14190 45 ASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILV 96 (284)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 34566777788999999999999999999999999999877543 3443444
No 348
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=46.19 E-value=56 Score=23.82 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHHh
Q 032570 9 VMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSA 45 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~S-aHR~p~~~~~~~~~~ 45 (138)
.+++|...|++.||+|+++-.. =-=+.+++.++++..
T Consensus 13 t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~ 50 (117)
T COG1393 13 TCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKL 50 (117)
T ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHc
Confidence 7899999999999999866443 334556777777654
No 349
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=46.05 E-value=88 Score=25.44 Aligned_cols=69 Identities=10% Similarity=0.019 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCeE----EEE----EccCCCchHHHHHHHHhhhcCCe-EEEEecCcC-CchhHHhhhccCCcEE
Q 032570 8 PVMNDAARTLSDFGVPYE----IKI----LPPHQNCKEALSYALSAKERGIK-IIIVGDGVE-AHLSGVAAANSQILVI 76 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~----~~V----~SaHR~p~~~~~~~~~~~~~~~~-viIa~AG~~-a~L~gvva~~t~~PVI 76 (138)
++-+...+.|++.|+++. +++ .=++-.|+.+.+.+++....+++ |||.+.++. ..+-.-+=....+|||
T Consensus 132 ~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVl 210 (239)
T TIGR02990 132 ETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVV 210 (239)
T ss_pred HHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEE
Confidence 344555666676666531 111 12345677777777666444555 666666652 2222223344566665
No 350
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=45.99 E-value=56 Score=25.66 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchH-------HHHHHHHhhhcCCeEEEE
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKE-------ALSYALSAKERGIKIIIV 55 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~-------~~~~~~~~~~~~~~viIa 55 (138)
|.+.+++..+.|++ .+|+-|++.|=..+. ..++++...+.|+++||.
T Consensus 160 ~~~~~~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG 213 (239)
T cd07381 160 DLERIAADIAEAKK---KADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIG 213 (239)
T ss_pred CHHHHHHHHHHHhh---cCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEc
Confidence 44555555555554 389999999985543 456666666668998884
No 351
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=45.85 E-value=1.4e+02 Score=24.40 Aligned_cols=70 Identities=9% Similarity=0.019 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
...+.+.+.++++| .|++.+......++...++++....++++-||.........+..+.- .-.+|||-+
T Consensus 41 ~~~~gi~~~a~~~g-~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~l~~~giPvV~v 112 (330)
T PRK15395 41 VVRKAIEKDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAPTVIEKARGQDVPVVFF 112 (330)
T ss_pred HHHHHHHHHHHhcC-CeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHHCCCcEEEE
Confidence 34556667777876 24555533334566666777777778899888875544445554433 235688876
No 352
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=45.85 E-value=1.1e+02 Score=21.70 Aligned_cols=84 Identities=15% Similarity=0.047 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC----chhHHhhhccCCcEEEec
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA----HLSGVAAANSQILVIRVP 79 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a----~L~gvva~~t~~PVIgvP 79 (138)
++|....+....+|+.+|-.++. ++. ...... ..+......+++.|-.. .|-..+.-....||+-+-
T Consensus 6 ddd~~R~~~L~~ILeFlGe~~~~--~~~----~~~~~~---~~~~~~~~~~v~~g~~~~~~~~l~~l~~~~~~~Pvlllg 76 (109)
T PF06490_consen 6 DDDAERRQRLSTILEFLGEQCEA--VSS----SDWSQA---DWSSPWEACAVILGSCSKLAELLKELLKWAPHIPVLLLG 76 (109)
T ss_pred CCcHHHHHhhhhhhhhcCCCeEE--ecH----HHHHHh---hhhcCCcEEEEEecCchhHHHHHHHHHhhCCCCCEEEEC
Confidence 46888889999999999987553 322 222221 22233444444455544 666666677899999876
Q ss_pred CCCCCCCchh-hhhhhcCC
Q 032570 80 LLSEDWSEDD-VINSIRMP 97 (138)
Q Consensus 80 ~~~~~~~G~d-LlS~lqmP 97 (138)
-.... .... +++.+.+|
T Consensus 77 ~~~~~-~~~~nvvg~Le~P 94 (109)
T PF06490_consen 77 EHDSP-EELPNVVGELEEP 94 (109)
T ss_pred CCCcc-ccccCeeEecCCC
Confidence 65543 3333 55556555
No 353
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.80 E-value=78 Score=26.24 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEc-------------cCCCchHHHHHHHHhhhcCCeEEEEec
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILP-------------PHQNCKEALSYALSAKERGIKIIIVGD 57 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~S-------------aHR~p~~~~~~~~~~~~~~~~viIa~A 57 (138)
-+...+.+..+.++++|||+++-++- ..|-|+ ..+++++.+++|.++++-+.
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPd-p~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPD-PKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCC-HHHHHHHHHHCCCeEEEEEC
Confidence 34566788888999999998875553 345665 77888888899999887665
No 354
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=45.32 E-value=40 Score=24.68 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEE
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 54 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viI 54 (138)
+++.+.|++.||+|+..-...-++.++..++......+-++.++
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll 45 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALL 45 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHHHHHHhCCCcccceEEEE
Confidence 57788999999999986554445555554443222223444444
No 355
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=45.26 E-value=85 Score=23.04 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC----chhHHhhh
Q 032570 12 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA----HLSGVAAA 69 (138)
Q Consensus 12 ~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a----~L~gvva~ 69 (138)
-....|+++|+.......-.+ .++++.+.++++.+ +.+++|+.-|.+. ..+-+++.
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~D-d~~~i~~~l~~~~~-~~DliIttGG~g~g~~D~t~~ai~~ 90 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPD-DPEEIREILRKAVD-EADVVLTTGGTGVGPRDVTPEALEE 90 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCC-CHHHHHHHHHHHHh-CCCEEEECCCCCCCCCccHHHHHHH
Confidence 345678899976443332232 24556665555433 6899888765432 34555554
No 356
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.10 E-value=41 Score=28.44 Aligned_cols=50 Identities=10% Similarity=0.097 Sum_probs=33.4
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
..|...|.....+.++.+ .++++|++.|...-+..=.- .-..=||-|=++
T Consensus 186 AtVt~~hs~t~~l~~~~~-----~ADIVI~AvG~p~li~~~~v-k~GavVIDVGi~ 235 (286)
T PRK14184 186 ATVTVCHSRTPDLAEECR-----EADFLFVAIGRPRFVTADMV-KPGAVVVDVGIN 235 (286)
T ss_pred CEEEEEeCCchhHHHHHH-----hCCEEEEecCCCCcCCHHHc-CCCCEEEEeeee
Confidence 568888998888888775 47999999988766553222 112226666554
No 357
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.08 E-value=63 Score=27.28 Aligned_cols=51 Identities=14% Similarity=0.071 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhc-CCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~-~~~viIa 55 (138)
++.-+.+...+.++++|+.++....+..-+.+++.+.+++..++ ..+=||.
T Consensus 45 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlv 96 (284)
T PRK14193 45 GSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIV 96 (284)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 45567778888999999999999999999999999999887543 3444444
No 358
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.06 E-value=1.1e+02 Score=25.85 Aligned_cols=48 Identities=10% Similarity=0.232 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcc----------------------------------CCCchHHHHHHHHhhhcCCe
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPP----------------------------------HQNCKEALSYALSAKERGIK 51 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~Sa----------------------------------HR~p~~~~~~~~~~~~~~~~ 51 (138)
+...+++..+-+++.|||+|+-+.-- .|-| ...+++++.+++|.+
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP-dp~~mi~~Lh~~G~k 100 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP-NPKGMIDELHEQGVK 100 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC-CHHHHHHHHHHCCCE
Confidence 45667888888999999999865520 1112 367788888888999
Q ss_pred EEE
Q 032570 52 III 54 (138)
Q Consensus 52 viI 54 (138)
+++
T Consensus 101 v~l 103 (340)
T cd06597 101 VLL 103 (340)
T ss_pred EEE
Confidence 865
No 359
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=45.05 E-value=1.1e+02 Score=25.43 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC
Q 032570 10 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 61 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a 61 (138)
++-+..+.+++|++.-.+++.-.|+..++.+++..+...|++=|.++.|-..
T Consensus 48 ~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p 99 (281)
T TIGR00677 48 LTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPP 99 (281)
T ss_pred HHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 3344444458899999999999999999999999888889998888888654
No 360
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.93 E-value=63 Score=27.26 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+.+...+.++++|+.++..-.+..-+.+++.+.++...+ ...+=||.
T Consensus 44 as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIiv 95 (282)
T PRK14180 44 ASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILV 95 (282)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 4556777788899999999999999999999999999988754 34444444
No 361
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=44.89 E-value=1.4e+02 Score=22.69 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCch-HHHHHHHHhhhcCCeEEEEecCcCCchhHH-hhhccCCcEEEec
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCK-EALSYALSAKERGIKIIIVGDGVEAHLSGV-AAANSQILVIRVP 79 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~-~~~~~~~~~~~~~~~viIa~AG~~a~L~gv-va~~t~~PVIgvP 79 (138)
....+.+.+.++++|+.+. +.......+ ...++.+...+++++.+|..........-+ ....-..||+.+=
T Consensus 15 ~~~~~gi~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~ 87 (270)
T cd01545 15 SEIQLGALDACRDTGYQLV--IEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIA 87 (270)
T ss_pred HHHHHHHHHHHHhCCCeEE--EEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCCEEEEe
Confidence 4556677788888886544 444443333 555566666677889888776653332211 1233567998763
No 362
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=44.83 E-value=94 Score=24.30 Aligned_cols=72 Identities=11% Similarity=-0.010 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhCC---------CeEEEEEccCCCchHHHHHHHHhh------hcCCeEEEEecCcCCchhHHhhhcc
Q 032570 7 LPVMNDAARTLSDFGV---------PYEIKILPPHQNCKEALSYALSAK------ERGIKIIIVGDGVEAHLSGVAAANS 71 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi---------~~~~~V~SaHR~p~~~~~~~~~~~------~~~~~viIa~AG~~a~L~gvva~~t 71 (138)
+.+++++...|..-+- ++.+-....++.|+++..+.+.+. ..++++|++++-..--++..+|-..
T Consensus 28 l~vs~~t~~~l~~~~~~~~~~~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L 107 (200)
T PRK02277 28 LNVSRETATWLLTRAKKLEKAPAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADEL 107 (200)
T ss_pred hcchHHHHHHHHhcccCCCCCCCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHh
Confidence 5677888887763221 345566678889987776554442 2467999999999889999999888
Q ss_pred CCcEEEe
Q 032570 72 QILVIRV 78 (138)
Q Consensus 72 ~~PVIgv 78 (138)
..|..-.
T Consensus 108 ~~~~~~~ 114 (200)
T PRK02277 108 GKDLAIY 114 (200)
T ss_pred CCCcEEE
Confidence 8886443
No 363
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.66 E-value=66 Score=27.15 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+.+...+.++++|+.++....+..-+.+++.+.+++..+ ...+=||+
T Consensus 43 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIiv 94 (282)
T PRK14166 43 ASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILV 94 (282)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4556778888899999999999999999999999999987744 34454554
No 364
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=44.57 E-value=17 Score=30.34 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=28.1
Q ss_pred hHHHHHHHHhhhcCCeEEEEecCcCCchhHH--hhhccCCcEEEecCCC
Q 032570 36 KEALSYALSAKERGIKIIIVGDGVEAHLSGV--AAANSQILVIRVPLLS 82 (138)
Q Consensus 36 ~~~~~~~~~~~~~~~~viIa~AG~~a~L~gv--va~~t~~PVIgvP~~~ 82 (138)
+...+.+++.++.+++.+|++-|-.. +.+. ++-.-..|||+||-.-
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs-~~~a~~L~~~~~i~vigiPkTI 126 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGS-MKGAHKLSEEFGIPVIGIPKTI 126 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHH-HHHHHHHHHHHHSEEEEEEEET
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCH-HHHHHHHHhcCceEEEEEeccc
Confidence 34455667777777887777766432 2222 2212248999999864
No 365
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=44.54 E-value=1e+02 Score=24.51 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecC
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 58 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG 58 (138)
.|....+-+.++++.+|-+|.+++. +..++++++.+..|..+.++..|
T Consensus 39 ~~~~q~~~v~~I~~~WGg~fnv~~~------~s~~~~i~~~k~~G~vvhLtmyg 86 (176)
T PRK03958 39 NDEHVKESVEDIVERWGGPFEVEVT------KSWKKEIREWKDGGIVVHLTMYG 86 (176)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEc------CCHHHHHHHHHhCCcEEEEEEec
Confidence 4778888899999999999998776 44555555555456666666555
No 366
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=44.39 E-value=1.3e+02 Score=25.50 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=28.0
Q ss_pred CCCeEEEEEccC-----CCchHHHHHHHHhhhcCCeEEEEecCc
Q 032570 21 GVPYEIKILPPH-----QNCKEALSYALSAKERGIKIIIVGDGV 59 (138)
Q Consensus 21 gi~~~~~V~SaH-----R~p~~~~~~~~~~~~~~~~viIa~AG~ 59 (138)
+.+.-+|+...+ .++++..++++..++.|++.|-+-.|.
T Consensus 207 ~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~ 250 (337)
T PRK13523 207 DGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGA 250 (337)
T ss_pred CCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 456677777533 367888888888888888877766663
No 367
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=44.28 E-value=1.2e+02 Score=26.29 Aligned_cols=108 Identities=7% Similarity=0.037 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHH-----------HHHHHHhhhcCCeEEEE-ecCcCCchhHHhhhccCC
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEA-----------LSYALSAKERGIKIIIV-GDGVEAHLSGVAAANSQI 73 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~-----------~~~~~~~~~~~~~viIa-~AG~~a~L~gvva~~t~~ 73 (138)
+-+.++++.+..+++|++..++++- ++++. .+++++..--+.+++++ +-..+..---.+ +.+..
T Consensus 202 s~~~l~~~~~lA~~~~~~i~~H~~E---~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~l-a~~g~ 277 (441)
T TIGR03314 202 SDAGLEMCREAVQATGRGFHIHVAE---DIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELL-NETDT 277 (441)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCC---CHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHH-HHcCC
Confidence 3467888998889999999888874 22222 22333222224455433 333333333334 34566
Q ss_pred cEEEecCCCCCC-Cchh-hhhhhcCCCCCeeeEEecCCc----hhHHHHHHHH
Q 032570 74 LVIRVPLLSEDW-SEDD-VINSIRMPSHVQVASVPRNNA----KNAALYAVKV 120 (138)
Q Consensus 74 PVIgvP~~~~~~-~G~d-LlS~lqmP~GvpvatV~I~~~----~nAA~~AaqI 120 (138)
-|+.||.+.-.+ .|+- +..++. .|++|+ ++.|+. +....+|..+
T Consensus 278 ~v~~cP~sn~~l~~G~~p~~~~~~--~Gv~v~-LGtD~~~~d~~~em~~a~~~ 327 (441)
T TIGR03314 278 FVVHNPESNMGNAVGYNPVLRMFK--NGILLG-LGTDGYTSDMFESLKFANFK 327 (441)
T ss_pred cEEECHHHHhhhccCCCCHHHHHH--CCCEEE-EcCCCCCcCHHHHHHHHHHH
Confidence 799999886544 3665 666665 688886 566642 4444444444
No 368
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=44.24 E-value=1.5e+02 Score=22.91 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEec
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 57 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~A 57 (138)
+.+.+.+.++++|+ ++.+.... .++...+++++...++++-||...
T Consensus 19 l~~gi~~~~~~~gy--~~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~~ 64 (260)
T cd06304 19 AYEGLEKAEKELGV--EVKYVESV-EDADYEPNLRQLAAQGYDLIFGVG 64 (260)
T ss_pred HHHHHHHHHHhcCc--eEEEEecC-CHHHHHHHHHHHHHcCCCEEEECC
Confidence 34556666777776 45554433 677777888888777888776654
No 369
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.21 E-value=80 Score=26.77 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+++...+.++++|+.++..-.+..-+.+++.+.+++..+ ...+=||.
T Consensus 45 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlv 96 (288)
T PRK14171 45 ASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIV 96 (288)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEE
Confidence 4455677778899999999999999999999999999988744 34444444
No 370
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.99 E-value=1e+02 Score=26.52 Aligned_cols=52 Identities=8% Similarity=0.144 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCC---------chHHHHHHHHhhhcCCeEEEE
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQN---------CKEALSYALSAKERGIKIIIV 55 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~---------p~~~~~~~~~~~~~~~~viIa 55 (138)
..+.+.+++.++.|+.+...+.+.+.-.|.. .+++.+|.+..++.|+.|.|=
T Consensus 264 NDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR 324 (348)
T PRK14467 264 NDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVR 324 (348)
T ss_pred cCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 4567899999999998865577888888863 356666766677778887765
No 371
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=43.93 E-value=1.2e+02 Score=26.83 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHH
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 44 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~ 44 (138)
+...+.+.++++-=.|++...++|+..+++.+.+++
T Consensus 13 IG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~ 48 (385)
T PRK05447 13 IGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQARE 48 (385)
T ss_pred HHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHH
Confidence 445556666666556888888899999999888765
No 372
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=43.90 E-value=1.2e+02 Score=23.63 Aligned_cols=79 Identities=9% Similarity=0.038 Sum_probs=52.9
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhh-hcC-CeEEEEecCcCCchhHHhhhccCCcEEEec
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK-ERG-IKIIIVGDGVEAHLSGVAAANSQILVIRVP 79 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~-~~~-~~viIa~AG~~a~L~gvva~~t~~PVIgvP 79 (138)
.|+..-..++..++.+++.+...++..-...-.|+...+.+++.- +.. -.+.+++..+-+-++..+|-...+|-+=+=
T Consensus 9 ~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiN 88 (187)
T PF05728_consen 9 NSSPQSFKAQALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLIN 88 (187)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEc
Confidence 455566667777888888888776666666677777766554442 222 237888887777777777777777765544
Q ss_pred C
Q 032570 80 L 80 (138)
Q Consensus 80 ~ 80 (138)
|
T Consensus 89 P 89 (187)
T PF05728_consen 89 P 89 (187)
T ss_pred C
Confidence 3
No 373
>PLN02540 methylenetetrahydrofolate reductase
Probab=43.84 E-value=94 Score=28.86 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=46.2
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 61 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a 61 (138)
||++|. .++-+....+++|++.-.+++.-.|+.+.+.+.+..+...|++=|.+..|=.-
T Consensus 40 Gst~~~-Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp 98 (565)
T PLN02540 40 GSTADL-TLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPP 98 (565)
T ss_pred CCcHHH-HHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 455543 34444444456799999999999999999999999998889998888888643
No 374
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.82 E-value=70 Score=27.20 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+++...+.++++|+.+++...+.+-+-+++.+.+++..+ ...+=|++
T Consensus 44 as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (297)
T PRK14167 44 ASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILV 95 (297)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4566778888899999999999999999999999999988744 34444444
No 375
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.81 E-value=70 Score=27.04 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+++...+.++++|+.+++.-....-+.+++.+.++...+ ...+=||.
T Consensus 46 as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlv 97 (284)
T PRK14177 46 ASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILL 97 (284)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 4566777888899999999999999888888999999988754 34444444
No 376
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=43.81 E-value=54 Score=20.19 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPH 32 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaH 32 (138)
+-+.++...|++.|++|+.+-....
T Consensus 10 ~~~~~~~~~l~~~gi~~~~~~~~~~ 34 (73)
T cd03042 10 SASYRVRIALNLKGLDYEYVPVNLL 34 (73)
T ss_pred cchHHHHHHHHHcCCCCeEEEecCc
Confidence 3456788899999999998766553
No 377
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=43.74 E-value=37 Score=28.36 Aligned_cols=45 Identities=27% Similarity=0.323 Sum_probs=34.8
Q ss_pred HHHHHHhhh--cCCeEEEEecCcCCchhHHhhhc----cCCcEEEecCCCC
Q 032570 39 LSYALSAKE--RGIKIIIVGDGVEAHLSGVAAAN----SQILVIRVPLLSE 83 (138)
Q Consensus 39 ~~~~~~~~~--~~~~viIa~AG~~a~L~gvva~~----t~~PVIgvP~~~~ 83 (138)
.|+.++... ..++.||+..|.-+.+.|+..+. ...|||+|.+..+
T Consensus 171 ~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~ 221 (331)
T PRK03910 171 LEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRS 221 (331)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 355555542 24899999999999999998876 4679999999754
No 378
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=43.63 E-value=81 Score=26.95 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=47.7
Q ss_pred CCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhH-HhhhccCCcEEEecCCCCCC
Q 032570 22 VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAANSQILVIRVPLLSEDW 85 (138)
Q Consensus 22 i~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~g-vva~~t~~PVIgvP~~~~~~ 85 (138)
+++++.+++-.-.|++-.+.++...+.|++||.-.||..+-+-= .+..+..+. ||+=.+-+.+
T Consensus 193 i~v~v~~~gsf~D~~k~k~~a~~li~~GaDVI~~~ag~~~~gv~~~A~~~~~~~-iGvdsDQ~~~ 256 (345)
T COG1744 193 IKVKVVYVGSFSDPAKGKEAANALIDQGADVIYPAAGGTGVGVFQAAKELGAYA-IGVDSDQSYL 256 (345)
T ss_pred ccEEEEEecCccChHHHHHHHHHHHhcCCCEEEecCCCCcchHHHHHHHhCCCe-EEEecccccc
Confidence 45678888888889999998899999999999999998776543 344555555 8876654433
No 379
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.42 E-value=40 Score=28.53 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=32.6
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
..|...|.....+.++.+ .++++|++.|...-+.+=.-- .-.=||-|=+.
T Consensus 184 ATVtichs~T~~L~~~~~-----~ADIvV~AvGkp~~i~~~~vk-~GavVIDvGin 233 (288)
T PRK14171 184 CSVTICHSKTHNLSSITS-----KADIVVAAIGSPLKLTAEYFN-PESIVIDVGIN 233 (288)
T ss_pred CEEEEeCCCCCCHHHHHh-----hCCEEEEccCCCCccCHHHcC-CCCEEEEeecc
Confidence 367777977777877764 479999999998766532211 11226666654
No 380
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=43.12 E-value=59 Score=23.94 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHH
Q 032570 8 PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALS 44 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~-V~SaHR~p~~~~~~~~~ 44 (138)
..++||.+.|++-|++|+++ +..--=+.+++.++++.
T Consensus 12 st~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 12 ANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGN 49 (126)
T ss_pred HHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHH
Confidence 46899999999999999875 44334456777777764
No 381
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.10 E-value=35 Score=28.86 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=32.7
Q ss_pred EEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 27 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 27 ~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
.|...|+..+.+.++.+ .++++|+..|...-+.+=.- .-..=||-|=+.
T Consensus 185 tVtv~hs~T~~l~~~~~-----~ADIvi~avG~p~~v~~~~v-k~gavVIDvGin 233 (285)
T PRK10792 185 TVTVCHRFTKNLRHHVR-----NADLLVVAVGKPGFIPGEWI-KPGAIVIDVGIN 233 (285)
T ss_pred eEEEEECCCCCHHHHHh-----hCCEEEEcCCCcccccHHHc-CCCcEEEEcccc
Confidence 66677998888888764 47999999999886654221 112226666543
No 382
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=42.89 E-value=1.3e+02 Score=22.53 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCc--hHHHHHHHHhhhcC
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNC--KEALSYALSAKERG 49 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p--~~~~~~~~~~~~~~ 49 (138)
...++.+.|.+.|++..+++.--.... +++.++++..++.+
T Consensus 141 ~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 141 NILKSLEILLRSGIPFELRTTVHRGFLDEEDLAEIATRIKENG 183 (191)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeCCCCCHHHHHHHHHHhccCC
Confidence 566677788889999888766433333 35777777666555
No 383
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.86 E-value=79 Score=26.89 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+.+...+.++++||.++....+..-+.+++.+.++...+ ...+=||+
T Consensus 45 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIiv 96 (297)
T PRK14186 45 ASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILL 96 (297)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4566778888899999999999999999999999999988754 33454544
No 384
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=42.80 E-value=74 Score=19.07 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa 55 (138)
+.=+.|+++...|++.|++|+.. ..-+.++...++.+.....+..+++.
T Consensus 8 ~~C~~C~~~~~~l~~~~i~~~~v--di~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 8 PWCPPCKKAKEYLTSKGIAFEEI--DVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred CCChhHHHHHHHHHHCCCeEEEE--eccCCHHHHHHHHHHhCCCcccEEEE
Confidence 34478999999999999987643 23344555555655444344444443
No 385
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=42.77 E-value=86 Score=21.80 Aligned_cols=36 Identities=8% Similarity=-0.076 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHH
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 44 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~ 44 (138)
...++.+...|+..||+|+-.=.+. .++...++.+.
T Consensus 16 k~~~~~v~~lL~~k~I~f~eiDI~~--d~~~r~em~~~ 51 (92)
T cd03030 16 KKRQQEVLGFLEAKKIEFEEVDISM--NEENRQWMREN 51 (92)
T ss_pred HHHHHHHHHHHHHCCCceEEEecCC--CHHHHHHHHHh
Confidence 4567888999999999997666654 46665555543
No 386
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=42.36 E-value=39 Score=29.45 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCch
Q 032570 9 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 63 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~-------------------------~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L 63 (138)
+.+-+.+.|+++|++.+ ..|...|.....+.++.+ .++++|+++|..+-+
T Consensus 197 Tp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~-----~ADIvIsAvGkp~~v 271 (345)
T PLN02897 197 TPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITR-----KADIVIAAAGIPNLV 271 (345)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHh-----hCCEEEEccCCcCcc
Q ss_pred hH
Q 032570 64 SG 65 (138)
Q Consensus 64 ~g 65 (138)
.+
T Consensus 272 ~~ 273 (345)
T PLN02897 272 RG 273 (345)
T ss_pred CH
No 387
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=42.34 E-value=2.1e+02 Score=24.03 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHHH-hC-----CCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecC
Q 032570 4 DLDLPVMNDAARTLSD-FG-----VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 58 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~-~g-----i~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG 58 (138)
..|.+.+++..+.+++ .+ +|.-+++. .+-+-++..++++..++.|++-|++...
T Consensus 179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~-~~~~~~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIA-PDLSDEELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeC-CCCCHHHHHHHHHHHHHcCCcEEEEECC
Confidence 3456666666666553 44 88889986 4444457778888777778887766543
No 388
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.15 E-value=81 Score=26.60 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+.+.-.+.++++|+.++..-.+...+-+++.+.+++..+ ...+=||.
T Consensus 43 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 94 (282)
T PRK14169 43 ASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILV 94 (282)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4456777788899999999999999999999999999988744 34454444
No 389
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.14 E-value=74 Score=26.93 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+.+...+.++++|+.+++...+..-+.+++.+.+++..+ ...+=||+
T Consensus 42 as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 93 (287)
T PRK14173 42 ASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILV 93 (287)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3456777888899999999999999999889999999987754 34554554
No 390
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=41.96 E-value=94 Score=23.85 Aligned_cols=64 Identities=20% Similarity=0.100 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhcc-CCcEEEecCCC
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS-QILVIRVPLLS 82 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t-~~PVIgvP~~~ 82 (138)
.++.+..+++|+. +.|+. |- ..+.+++++ ..++.||++|=--.-..|+..... .+||+|||...
T Consensus 76 g~l~~lae~~g~~--v~i~~-Gg--t~ar~~ik~---~~p~~iigVAC~~dL~~g~~~~~~~~ip~~gV~l~~ 140 (158)
T PF01976_consen 76 GDLKKLAEKYGYK--VYIAT-GG--TLARKIIKE---YRPKAIIGVACERDLISGIQDLKPLGIPVQGVLLDR 140 (158)
T ss_pred hHHHHHHHHcCCE--EEEEc-Ch--HHHHHHHHH---hCCCEEEEEechHHHHHHHHHHhhcCCCeeEEEeCC
Confidence 3556666788764 55552 22 233344443 346788888877766666665432 48888888865
No 391
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.94 E-value=1.3e+02 Score=23.69 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHH----hCCCeEEEEEccCCCchHHHHHHHHhhhc-CCeEEEEecCcCCchhH-HhhhccCCcEEE
Q 032570 8 PVMNDAARTLSD----FGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEAHLSG-VAAANSQILVIR 77 (138)
Q Consensus 8 ~~~~~~~~~L~~----~gi~~~~~V~SaHR~p~~~~~~~~~~~~~-~~~viIa~AG~~a~L~g-vva~~t~~PVIg 77 (138)
.-++-+.+.++. .|.+.++.+......|.+..+.++++.++ ++++||...+.....+- -++..-..|+|.
T Consensus 21 ~g~~~a~~~iN~~ggi~g~~l~~~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~ 96 (334)
T cd06347 21 NGAKLAVKEINAAGGVLGKKIELVVEDNKSDKEEAANAATRLIDQDKVVAIIGPVTSGATLAAGPIAEDAKVPMIT 96 (334)
T ss_pred HHHHHHHHHHHhcCCCCCeeEEEEEecCCCChHHHHHHHHHHhcccCeEEEEcCCccHhHHHhHHHHHHCCCeEEc
Confidence 334444445543 45667888888889999999888888654 77777654332222211 234566889997
No 392
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=41.74 E-value=1e+02 Score=26.58 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHHHHh---CCCeEEEEEccCCCch-----------HHHHHHHHhhhcCCeEEEEecCc
Q 032570 4 DLDLPVMNDAARTLSDF---GVPYEIKILPPHQNCK-----------EALSYALSAKERGIKIIIVGDGV 59 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~---gi~~~~~V~SaHR~p~-----------~~~~~~~~~~~~~~~viIa~AG~ 59 (138)
..|.+.+++..+.++.+ |..+.+.+...|..+. ++.+|.+..++.|+.|.|--..+
T Consensus 260 NDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G 329 (347)
T PRK14453 260 NDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFG 329 (347)
T ss_pred CCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 35678899999999988 4578899999998754 36777777778888887754433
No 393
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=41.67 E-value=2e+02 Score=23.79 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHH-HhCCCeEEEEEc-cCCCchHHHHHHHHhhhcCCeEEEEecCcCC--------chhH--HhhhccC
Q 032570 5 LDLPVMNDAARTLS-DFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEA--------HLSG--VAAANSQ 72 (138)
Q Consensus 5 SD~~~~~~~~~~L~-~~gi~~~~~V~S-aHR~p~~~~~~~~~~~~~~~~viIa~AG~~a--------~L~g--vva~~t~ 72 (138)
.|...+.++.+.++ ..++|..+++.. .........++++.+++.|++.|.+- |+.. .+.- -+...+.
T Consensus 114 ~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh-~r~~~~~~~~~~~~~~i~~i~~~~~ 192 (319)
T TIGR00737 114 RDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLH-GRTRAQGYSGEANWDIIARVKQAVR 192 (319)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEE-cccccccCCCchhHHHHHHHHHcCC
Confidence 47778888777775 578898888742 22233456778877777788766543 3321 1111 2334467
Q ss_pred CcEEEecCCCCCCCchhhhhhhcC--CCCCeeeEEecCCch
Q 032570 73 ILVIRVPLLSEDWSEDDVINSIRM--PSHVQVASVPRNNAK 111 (138)
Q Consensus 73 ~PVIgvP~~~~~~~G~dLlS~lqm--P~GvpvatV~I~~~~ 111 (138)
.|||++ ++-.+.-|...+++. ..+|-++.-.+.||.
T Consensus 193 ipvi~n---GgI~~~~da~~~l~~~gad~VmigR~~l~~P~ 230 (319)
T TIGR00737 193 IPVIGN---GDIFSPEDAKAMLETTGCDGVMIGRGALGNPW 230 (319)
T ss_pred CcEEEe---CCCCCHHHHHHHHHhhCCCEEEEChhhhhCCh
Confidence 888862 222233345555543 334444444444554
No 394
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=41.55 E-value=76 Score=18.83 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEI 26 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~ 26 (138)
+.-+.|+++...|++.+++|+.
T Consensus 8 ~~Cp~C~~~~~~L~~~~i~~~~ 29 (72)
T cd02066 8 STCPYCKRAKRLLESLGIEFEE 29 (72)
T ss_pred CCCHHHHHHHHHHHHcCCcEEE
Confidence 3458899999999999998763
No 395
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=41.43 E-value=1.4e+02 Score=22.68 Aligned_cols=52 Identities=23% Similarity=0.232 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccC---CCchHHHHHHHHhhhcCCeEEEEecCc
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGV 59 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaH---R~p~~~~~~~~~~~~~~~~viIa~AG~ 59 (138)
+.++++++.+.|++-.= .++|++.| ..+++..++++..+..++++++++=|.
T Consensus 57 ~~~~~~~~~~~l~~~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 57 SEEVLEKAAANLRRRYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred CHHHHHHHHHHHHHHCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 35677888888875421 33444433 357788888888888889999987765
No 396
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.39 E-value=81 Score=26.74 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+.+...+.++++||.++..-.+...+.+++.+.+++..+ ...+=||.
T Consensus 44 as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (295)
T PRK14174 44 ASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILV 95 (295)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4556778888899999999999999999899999999988754 34444444
No 397
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=41.28 E-value=44 Score=28.12 Aligned_cols=17 Identities=41% Similarity=0.815 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhCCCeE
Q 032570 9 VMNDAARTLSDFGVPYE 25 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~ 25 (138)
+-+++.++|++|||+|+
T Consensus 81 v~~~a~~iL~e~gI~ye 97 (262)
T COG1635 81 VREEADEILDEFGIRYE 97 (262)
T ss_pred ecchHHHHHHHhCCcce
Confidence 45789999999999987
No 398
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=41.28 E-value=65 Score=21.89 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 58 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG 58 (138)
.....+..+|+++|++..+-|++-+ .++-.+.++...++| .=|+.=|
T Consensus 18 ~~~~~~~~~l~~~~i~at~fv~~~~--~~~~~~~l~~l~~~G--~ei~~H~ 64 (123)
T PF01522_consen 18 DNYDRLLPLLKKYGIPATFFVIGSW--VERYPDQLRELAAAG--HEIGNHG 64 (123)
T ss_dssp THHHHHHHHHHHTT--EEEEE-HHH--HHHHHHHHHHHHHTT---EEEEE-
T ss_pred hhHHHHHHHHHhcccceeeeecccc--cccccccchhHHHHH--HHHHhcC
Confidence 4567889999999999999998875 555566777777777 3344444
No 399
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=41.15 E-value=78 Score=20.14 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcc
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPP 31 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~Sa 31 (138)
..-+.++++.-.|+..|++|++.-...
T Consensus 5 ~~Sp~~~kv~~~l~~~~i~~~~~~v~~ 31 (75)
T PF13417_consen 5 PGSPYSQKVRLALEEKGIPYELVPVDP 31 (75)
T ss_dssp TTSHHHHHHHHHHHHHTEEEEEEEEBT
T ss_pred CCChHHHHHHHHHHHcCCeEEEeccCc
Confidence 345789999999999999999877663
No 400
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=41.14 E-value=2.4e+02 Score=24.49 Aligned_cols=123 Identities=14% Similarity=0.092 Sum_probs=78.0
Q ss_pred CcCCHHHHHHHHHHHHHhCCCe-EE-EEEccCC-Cch-HHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCC-cEEE
Q 032570 3 SDLDLPVMNDAARTLSDFGVPY-EI-KILPPHQ-NCK-EALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI-LVIR 77 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~-~~-~V~SaHR-~p~-~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~-PVIg 77 (138)
+.||+.-+++..+..+++==.. .+ -+.+.+- .+. .++++.+.+++.|.+|+-..+=..+-.+..+..+.-+ -||=
T Consensus 138 GvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~ 217 (322)
T COG2984 138 GVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIY 217 (322)
T ss_pred ecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEE
Confidence 4578886666666555432111 22 2334443 333 3455667778889999999999999999988877433 4899
Q ss_pred ecCCCCCCCchh-hhhhhcCCCCCe-------------eeEEecC---CchhHHHHHHHHHccCCH
Q 032570 78 VPLLSEDWSEDD-VINSIRMPSHVQ-------------VASVPRN---NAKNAALYAVKVLGIADE 126 (138)
Q Consensus 78 vP~~~~~~~G~d-LlS~lqmP~Gvp-------------vatV~I~---~~~nAA~~AaqIl~~~~~ 126 (138)
+|++.---.+.. |+..-+ -..+| ++.+++| -|..+|..+.+||.-.+|
T Consensus 218 ~p~dn~i~s~~~~l~~~a~-~~kiPli~sd~~~V~~Ga~aA~gvdy~~~G~qtg~~v~~ILkG~~p 282 (322)
T COG2984 218 IPTDNLIVSAIESLLQVAN-KAKIPLIASDTSSVKEGALAALGVDYKDLGKQTGEMVVKILKGKKP 282 (322)
T ss_pred EecchHHHHHHHHHHHHHH-HhCCCeecCCHHHHhcCcceeeccCHHHHHHHHHHHHHHHHcCCCc
Confidence 999864334444 332211 11222 4778888 488999999999985544
No 401
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=40.88 E-value=28 Score=24.33 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=31.3
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEc--cCCCchHHHHHHHHh
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSA 45 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V~S--aHR~p~~~~~~~~~~ 45 (138)
+.|-.+++.++.+.|++-|++|+++=.+ ..-..+++.+.++++
T Consensus 12 ~~s~~~~V~~~i~~i~~sgl~y~v~pm~T~iEGe~dev~~~i~~~ 56 (92)
T PF01910_consen 12 GESVSAYVAEAIEVIKESGLKYEVGPMGTTIEGELDEVMALIKEA 56 (92)
T ss_dssp SSHHHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCceEEcCCccEEEecHHHHHHHHHHH
Confidence 6777889999999999999998863211 122267777777665
No 402
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.80 E-value=84 Score=26.58 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+++...+.++++|+.++....+..-+.+++.+.+++..+ ...+=||+
T Consensus 46 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlv 97 (285)
T PRK10792 46 ASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILV 97 (285)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4456778888899999999999999999999999999988754 34454554
No 403
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.80 E-value=89 Score=26.39 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+++...+.++++|+.++..-.+..-+.+++.+.+++..+ ...+=||+
T Consensus 45 as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIiv 96 (284)
T PRK14179 45 ASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILV 96 (284)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3455677778899999999999999888888999999988754 34444444
No 404
>PF13072 DUF3936: Protein of unknown function (DUF3936)
Probab=40.54 E-value=24 Score=21.42 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHhC
Q 032570 124 ADEDLLERIRKYVEE 138 (138)
Q Consensus 124 ~~~~l~~kl~~~~~~ 138 (138)
.-++|+.+|++|+++
T Consensus 15 KAWeIr~~Lkey~k~ 29 (38)
T PF13072_consen 15 KAWEIRAKLKEYGKQ 29 (38)
T ss_pred hHHHHHHHHHHHHHh
Confidence 346899999999864
No 405
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=40.48 E-value=2.4e+02 Score=24.18 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=31.7
Q ss_pred CcCCHH-HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEE
Q 032570 3 SDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 55 (138)
Q Consensus 3 S~SD~~-~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa 55 (138)
++.|+. ..+.+..+.+.+++|.-++..+.--+ .+.++...+.|++.|++
T Consensus 167 g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s----~~~a~~l~~~Gvd~I~V 216 (352)
T PRK05437 167 GDRDFRGWLDNIAEIVSALPVPVIVKEVGFGIS----KETAKRLADAGVKAIDV 216 (352)
T ss_pred CcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCc----HHHHHHHHHcCCCEEEE
Confidence 345665 45667777777899998888753223 34444455568887776
No 406
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=40.08 E-value=1e+02 Score=23.06 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHh
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 45 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~ 45 (138)
.+.+.+-++++++.=.|++.-.++||+.+.+.+.++++
T Consensus 9 SIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f 46 (129)
T PF02670_consen 9 SIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREF 46 (129)
T ss_dssp HHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHh
Confidence 46678888999997779999999999999999988776
No 407
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=39.94 E-value=49 Score=22.93 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=20.2
Q ss_pred cCCeEEEEecCcCCchhHHhhhccCCcEEE
Q 032570 48 RGIKIIIVGDGVEAHLSGVAAANSQILVIR 77 (138)
Q Consensus 48 ~~~~viIa~AG~~a~L~gvva~~t~~PVIg 77 (138)
++++++| +.|....+-|+--..|..|||.
T Consensus 34 ~~~daiV-vtG~~~n~mg~~d~~~~~pVIn 62 (80)
T PF03698_consen 34 QNVDAIV-VTGQDTNMMGIQDTSTKVPVIN 62 (80)
T ss_pred CCcCEEE-EECCCcccccccccccCceEEe
Confidence 3455544 6677777777766778888886
No 408
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=39.92 E-value=1.6e+02 Score=22.22 Aligned_cols=67 Identities=16% Similarity=0.065 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgv 78 (138)
...+.+.+.++++|+ ++.+...-..++...++++.....+++-||........ ..+.- ....|||-+
T Consensus 16 ~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~~~~l~~~~ipvV~~ 84 (265)
T cd06299 16 SLATAIQDAASAAGY--STIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSA--EQLEDLLKRGIPVVFV 84 (265)
T ss_pred HHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh--HHHHHHHhCCCCEEEE
Confidence 455667777888886 55555555677777788888878889977776543222 12221 345788754
No 409
>PRK12559 transcriptional regulator Spx; Provisional
Probab=39.90 E-value=85 Score=23.06 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHH
Q 032570 8 PVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALS 44 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~-SaHR~p~~~~~~~~~ 44 (138)
+.|++|.+.|++.|++|+.+-. ---=+.+++.++++.
T Consensus 11 ~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 11 ASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred hHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 6789999999999999987644 344455667777654
No 410
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=39.80 E-value=1.4e+02 Score=21.57 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHh
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 45 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~ 45 (138)
.++.+...|...|+. ++.|++ |++++..++.+..
T Consensus 23 ~ar~v~~~L~~~g~~-~i~i~n--Rt~~ra~~l~~~~ 56 (135)
T PF01488_consen 23 AARAVAAALAALGAK-EITIVN--RTPERAEALAEEF 56 (135)
T ss_dssp HHHHHHHHHHHTTSS-EEEEEE--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-EEEEEE--CCHHHHHHHHHHc
Confidence 467778888888987 677776 9999999988776
No 411
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=39.80 E-value=49 Score=27.67 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=34.5
Q ss_pred HHHHHhhh--cCCeEEEEecCcCCchhHHhhhc----cCCcEEEecCCC
Q 032570 40 SYALSAKE--RGIKIIIVGDGVEAHLSGVAAAN----SQILVIRVPLLS 82 (138)
Q Consensus 40 ~~~~~~~~--~~~~viIa~AG~~a~L~gvva~~----t~~PVIgvP~~~ 82 (138)
|+.++... ..++.|++..|.-+.+.|+..++ ....||+|.+..
T Consensus 173 EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 173 EIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred HHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 55655543 25899999999999999999886 568999999965
No 412
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=39.74 E-value=1.3e+02 Score=23.21 Aligned_cols=73 Identities=22% Similarity=0.028 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHh---CCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEEecCcC--CchhHHhhhccCCc-EEEecCC
Q 032570 9 VMNDAARTLSDF---GVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIVGDGVE--AHLSGVAAANSQIL-VIRVPLL 81 (138)
Q Consensus 9 ~~~~~~~~L~~~---gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa~AG~~--a~L~gvva~~t~~P-VIgvP~~ 81 (138)
..+...+.++.+ |+++++..+..+..++-+.++.+...+ .+.+++|.++|+- -.|+.++|+..... +.-|...
T Consensus 43 a~~~l~~~~~~~~~~~~~~~~~~vd~~d~~~~~~~v~~~i~~~~~~~v~vnlsgG~R~l~~~~~~a~~~~~~~~~~v~~~ 122 (203)
T TIGR01884 43 AVESLRAIISDLGGNLVEGTIKEIELKDVPSILRQMSDIIKEEREPRVIINLSGGMRILILILLLLAILVKTRVFRVYYE 122 (203)
T ss_pred HHHHHHHHHHHhccCCCcceEEEEecCCHHHHHHHHHHHHHhcccCcEEEEcCCCchHHHHHHHHHHHhcccceEEEEEE
Confidence 344455555555 778999999888877777777665543 3445888877764 45667777765544 3344443
No 413
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=39.56 E-value=1.7e+02 Score=22.33 Aligned_cols=67 Identities=12% Similarity=-0.019 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCC--------------CeEEEEEccCCCchHHHHHHHHhh-hcCCeEEEEecCcCCchhHHhhhccCCcE
Q 032570 11 NDAARTLSDFGV--------------PYEIKILPPHQNCKEALSYALSAK-ERGIKIIIVGDGVEAHLSGVAAANSQILV 75 (138)
Q Consensus 11 ~~~~~~L~~~gi--------------~~~~~V~SaHR~p~~~~~~~~~~~-~~~~~viIa~AG~~a~L~gvva~~t~~PV 75 (138)
.+..+.|.+.|. +|-+.+.+.+..|+.+..+.+... ..++++|++.+-..--++..+|-....|.
T Consensus 3 ~~~~~~l~~~ga~~~g~f~L~SG~~s~~y~d~~~l~~~p~~~~~l~~~l~~~~~~d~Vvg~~~gGi~~A~~~a~~l~~p~ 82 (170)
T PRK13811 3 NTIAELLISYKAIEFGDFTLASGAKSRYYIDIKTAITHPALLKEIAAEVAKRYDFDVVAGVAVGGVPLAVAVSLAAGKPY 82 (170)
T ss_pred HHHHHHHHHCCCEEECCEEEccCCcCCEEEeCchhccCHHHHHHHHHHHHhhCCCCEEEecCcCcHHHHHHHHHHHCCCE
Confidence 455666666654 233456668888988888877653 34688999999888889999998888886
Q ss_pred EE
Q 032570 76 IR 77 (138)
Q Consensus 76 Ig 77 (138)
+-
T Consensus 83 ~~ 84 (170)
T PRK13811 83 AI 84 (170)
T ss_pred EE
Confidence 53
No 414
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=39.29 E-value=1.3e+02 Score=23.96 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCeEEEEEccCC-------------CchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 12 DAARTLSDFGVPYEIKILPPHQ-------------NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 12 ~~~~~L~~~gi~~~~~V~SaHR-------------~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
++.+.|+++. .+.+.|.+.+. +.+.+.+++. .++++|+-+|-+.-. =+....+|+|-+
T Consensus 206 ~~~~~l~~~~-~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~-----~ad~vIs~~G~~t~~---Ea~~~g~P~l~i 276 (318)
T PF13528_consen 206 DLIEALKALP-DYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMA-----AADLVISKGGYTTIS---EALALGKPALVI 276 (318)
T ss_pred HHHHHHHhCC-CCeEEEEcCCcccccCCCEEEeecChHHHHHHHH-----hCCEEEECCCHHHHH---HHHHcCCCEEEE
Confidence 5667777766 56777776665 1234444442 379999877764322 223478899999
Q ss_pred cCCC
Q 032570 79 PLLS 82 (138)
Q Consensus 79 P~~~ 82 (138)
|...
T Consensus 277 p~~~ 280 (318)
T PF13528_consen 277 PRPG 280 (318)
T ss_pred eCCC
Confidence 9974
No 415
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.28 E-value=90 Score=26.33 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
.+.-+.+.-.+.++++|+.+++.-.+...+.+++.+.+++..+ ...+=||+
T Consensus 45 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIiv 96 (286)
T PRK14175 45 ASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILV 96 (286)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3455677778899999999999999999999999999987754 34454554
No 416
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=39.25 E-value=1.2e+02 Score=22.38 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhc-CCeEEEEecCcC----CchhHHhhhccC
Q 032570 13 AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVE----AHLSGVAAANSQ 72 (138)
Q Consensus 13 ~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~-~~~viIa~AG~~----a~L~gvva~~t~ 72 (138)
.+..|+++|.+... +.-.--.++++.+.+++..++ +++++|+..|.+ ...+-+++....
T Consensus 25 l~~~l~~~G~~v~~-~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~~~ 88 (152)
T cd00886 25 LVELLEEAGHEVVA-YEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPLLD 88 (152)
T ss_pred HHHHHHHcCCeeee-EEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHHhC
Confidence 45578999975322 222445556666666555332 689888876654 345555554443
No 417
>PRK05382 chorismate synthase; Validated
Probab=39.25 E-value=92 Score=27.33 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=25.5
Q ss_pred CcEEEecCCCC--CCCchh-hhhhhcCCCCCe-eeEEecCCchhHHH
Q 032570 73 ILVIRVPLLSE--DWSEDD-VINSIRMPSHVQ-VASVPRNNAKNAAL 115 (138)
Q Consensus 73 ~PVIgvP~~~~--~~~G~d-LlS~lqmP~Gvp-vatV~I~~~~nAA~ 115 (138)
.=|-|||+--+ -++.+| .|+..-|. +| |=-|-|+.++++|.
T Consensus 204 ~~~~gvP~GLG~p~f~kLda~la~a~ms--IpAvKgvE~G~Gf~~a~ 248 (359)
T PRK05382 204 VVAEGVPAGLGEPVFDKLDADLAHALMS--INAVKGVEIGDGFAAAR 248 (359)
T ss_pred EEEECCCCCCCccccccchHHHHHHhcC--cCceeEEEECcchhhcc
Confidence 33566776532 257888 77776662 22 55577788877653
No 418
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.18 E-value=99 Score=26.14 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
.+.-+++...+.++++|+.++....+.+-+.+++.+.+++..+ ...+=|++
T Consensus 44 as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlv 95 (286)
T PRK14184 44 ASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILL 95 (286)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEE
Confidence 4556777778899999999999999999889999999988754 34444444
No 419
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=39.16 E-value=22 Score=29.59 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh----cCCeEEEE---------ecCcCCchhHHhhhccCC
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE----RGIKIIIV---------GDGVEAHLSGVAAANSQI 73 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~----~~~~viIa---------~AG~~a~L~gvva~~t~~ 73 (138)
+.|+.+... ++.+..||--+.. |-|-.+-+.++++.... -.++||.+ +-|++.||+ .+..+
T Consensus 71 l~~v~~d~~-~~~Le~pYvPgfL-afREa~v~l~~L~~v~~erh~fr~dvilvDGnG~lHprGfGlACHlG----vL~~l 144 (261)
T KOG4417|consen 71 LKHVATDSD-TRMLELPYVPGFL-AFREAEVMLDFLKSVITERHEFRPDVILVDGNGELHPRGFGLACHLG----VLSGL 144 (261)
T ss_pred ceeeeehhh-hhhhccCcCccce-eeehhHHHHHHHHhcccccCCccccEEEEcCCceEcccccchhhhhh----HhcCC
Confidence 334444444 5778888877777 56777888888877642 24677765 346677764 45678
Q ss_pred cEEEecC
Q 032570 74 LVIRVPL 80 (138)
Q Consensus 74 PVIgvP~ 80 (138)
|+|||--
T Consensus 145 p~iGVaK 151 (261)
T KOG4417|consen 145 PSIGVAK 151 (261)
T ss_pred Cccchhc
Confidence 9999864
No 420
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=39.15 E-value=39 Score=21.11 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEc
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILP 30 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~S 30 (138)
-+.+++++-.|...|++|+.....
T Consensus 9 ~p~~~rvr~~L~~~gl~~~~~~~~ 32 (71)
T cd03037 9 CPFCVKARMIAGLKNIPVEQIILQ 32 (71)
T ss_pred CcHhHHHHHHHHHcCCCeEEEECC
Confidence 368899999999999999986554
No 421
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.08 E-value=88 Score=26.34 Aligned_cols=50 Identities=10% Similarity=0.208 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
+.-+++.-.+.++++|+.++..-.+..-+.+++.+.+++..+ ...+=||.
T Consensus 46 s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlv 96 (278)
T PRK14172 46 SIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIML 96 (278)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 344677778899999999999999999889999999988744 34454444
No 422
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=39.04 E-value=38 Score=24.50 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=32.4
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEE----EEccCCCchHHHHHHHHhhh
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIK----ILPPHQNCKEALSYALSAKE 47 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~----V~SaHR~p~~~~~~~~~~~~ 47 (138)
+.|=.++..++.+.|+++|++|+++ +.=. ..+++.+.++.+..
T Consensus 16 ~~svs~yVa~~i~~lk~~glky~~~pm~T~iEg--~~del~~~ik~~~E 62 (100)
T COG0011 16 GPSVSKYVAEAIEILKESGLKYQLGPMGTVIEG--ELDELMEAVKEAHE 62 (100)
T ss_pred CCCHHHHHHHHHHHHHHcCCceeecCcceEEEe--cHHHHHHHHHHHHH
Confidence 4444789999999999999999862 3323 67888888876643
No 423
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=38.94 E-value=77 Score=22.53 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCC-CCCCc
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS-EDWSE 87 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~-~~~~G 87 (138)
.+++..+..++.|+++++.-.|. +...+. ...+++|+..--..-.+.-+-......||+.++... +.++|
T Consensus 19 l~~km~~~~~~~gi~~~V~A~~~----~~~~~~-----~~~~DviLl~Pqi~~~~~~i~~~~~~~pV~~I~~~~Yg~~dg 89 (106)
T PRK10499 19 LVSKMRAQAEKYEVPVIIEAFPE----TLAGEK-----GQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDG 89 (106)
T ss_pred HHHHHHHHHHHCCCCEEEEEeec----chhhcc-----ccCCCEEEECHHHHHHHHHHHhhcCCCCEEEEChHhhhcCCH
Confidence 34566677789999998764432 222221 245799998655666666664333447999988764 33455
Q ss_pred hh
Q 032570 88 DD 89 (138)
Q Consensus 88 ~d 89 (138)
-.
T Consensus 90 ~~ 91 (106)
T PRK10499 90 LG 91 (106)
T ss_pred HH
Confidence 33
No 424
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=38.87 E-value=86 Score=23.72 Aligned_cols=58 Identities=26% Similarity=0.258 Sum_probs=35.4
Q ss_pred HHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCCC
Q 032570 15 RTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 82 (138)
Q Consensus 15 ~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~~ 82 (138)
...+-||+ ++..... .+++++.+.++++..+|+++||+.. +.--+|..-.+|. ++..+
T Consensus 94 ~~~~ll~~--~i~~~~~-~~~~e~~~~i~~~~~~G~~viVGg~-----~~~~~A~~~gl~~--v~i~s 151 (176)
T PF06506_consen 94 SIEELLGV--DIKIYPY-DSEEEIEAAIKQAKAEGVDVIVGGG-----VVCRLARKLGLPG--VLIES 151 (176)
T ss_dssp HHHHHHT---EEEEEEE-SSHHHHHHHHHHHHHTT--EEEESH-----HHHHHHHHTTSEE--EESS-
T ss_pred HHHHHhCC--ceEEEEE-CCHHHHHHHHHHHHHcCCcEEECCH-----HHHHHHHHcCCcE--EEEEe
Confidence 33445677 4444433 4689999999999999999999843 3345556666664 44443
No 425
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=38.87 E-value=1e+02 Score=22.34 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcC----CchhHHhhhccCCcEE
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE----AHLSGVAAANSQILVI 76 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~----a~L~gvva~~t~~PVI 76 (138)
.-+.+.|+++|+... +..-..-.++.+.+.+++..++ .++||+..|.+ ...+-+++.....++.
T Consensus 20 ~~l~~~l~~~G~~v~-~~~~v~Dd~~~i~~~l~~~~~~-~D~VittGG~g~~~~D~t~~a~~~~~~~~l~ 87 (144)
T PF00994_consen 20 PFLAALLEELGIEVI-RYGIVPDDPDAIKEALRRALDR-ADLVITTGGTGPGPDDVTPEALAEAGGRELP 87 (144)
T ss_dssp HHHHHHHHHTTEEEE-EEEEEESSHHHHHHHHHHHHHT-TSEEEEESSSSSSTTCHHHHHHHHHSSEE-H
T ss_pred HHHHHHHHHcCCeee-EEEEECCCHHHHHHHHHhhhcc-CCEEEEcCCcCcccCCcccHHHHHhcCcccc
Confidence 456778889998533 2233456777777776555444 49999888764 5567777766665433
No 426
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=38.83 E-value=1.4e+02 Score=25.37 Aligned_cols=48 Identities=8% Similarity=0.045 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcc-------------CCCchHHHHHHHHhhhcCCeEEE
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPP-------------HQNCKEALSYALSAKERGIKIII 54 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~Sa-------------HR~p~~~~~~~~~~~~~~~~viI 54 (138)
+.+.+++..+.+++.+||+|+-+... .|-|+ ..+++++..+.|.++++
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~ 82 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGFPN-PKEMFDNLHNKGLKCST 82 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCCCC-HHHHHHHHHHCCCeEEE
Confidence 44557888889999999998755543 56665 46788888888888554
No 427
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=38.76 E-value=82 Score=23.47 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=25.7
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEc----cCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhcc
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKILP----PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 71 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~S----aHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t 71 (138)
|...|.. ..+.|+.|.-.-+.+++. .-|.|+++.+.++....+ ..|++--+|++..=.-...++|
T Consensus 35 Gn~~dv~----~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~~aa~sHT 103 (138)
T PF13607_consen 35 GNEADVD----FADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARRAARR-KPVVVLKAGRTEAGARAAASHT 103 (138)
T ss_dssp TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHHHCCC-S-EEEEE---------------
T ss_pred CccccCC----HHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHHHhcC-CCEEEEeCCCchhhhhhhhccC
Confidence 5555654 345666666554444443 346677777777766555 5677777777554444444554
No 428
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=38.75 E-value=66 Score=28.10 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=26.3
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchH
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKE 37 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~ 37 (138)
|++.=|+|+++++.|++.||+|+..-++ +.++.
T Consensus 8 s~~~Cp~C~~aK~~L~~~gi~~~~idi~--~~~~~ 40 (410)
T PRK12759 8 TKTNCPFCDLAKSWFGANDIPFTQISLD--DDVKR 40 (410)
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEECC--CChhH
Confidence 5677799999999999999999865554 55543
No 429
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=38.70 E-value=1.2e+02 Score=23.30 Aligned_cols=52 Identities=10% Similarity=-0.001 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEc-c-----------CCCchHHHHHHHHhhhcCCeEEEEecC
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILP-P-----------HQNCKEALSYALSAKERGIKIIIVGDG 58 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~S-a-----------HR~p~~~~~~~~~~~~~~~~viIa~AG 58 (138)
+.++.+.++.|+..|+.+.+.-.. . ++..+.+.+-++.+.+.++++||-+=-
T Consensus 29 l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~ 92 (189)
T TIGR02883 29 LEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHL 92 (189)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEec
Confidence 568889999999999875432221 1 122234555555566678899987643
No 430
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=38.52 E-value=1.1e+02 Score=24.60 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCC-chHHHHHHHHhhhcCCeEEEEecCcCCchhHHh
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 67 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~-p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv 67 (138)
+-+.++.+.+++.|....+..--..|. |+.+.++++...+-|++.|-.+-=.-...|--+
T Consensus 110 ~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v 170 (259)
T cd07939 110 DQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTT 170 (259)
T ss_pred HHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHH
Confidence 345566667778898766666656655 778888888887777876544433333444433
No 431
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=38.51 E-value=1.4e+02 Score=24.96 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcc-----CC----------CchHHHHHHHHhhhcCCeEEEEe
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPP-----HQ----------NCKEALSYALSAKERGIKIIIVG 56 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~Sa-----HR----------~p~~~~~~~~~~~~~~~~viIa~ 56 (138)
+...+++..+.+++.+||+|+-+.-. ++ -| ...+++++..++|.+|++-+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FP-dp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFP-DPKAMVRELHEMNAELMISI 86 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCC-CHHHHHHHHHHCCCEEEEEe
Confidence 44556777888899999998766653 23 23 35678888888999987643
No 432
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=38.47 E-value=35 Score=29.67 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=39.4
Q ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 2 ESDLDLPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 2 GS~SD~~~~~~~~~~L~~~gi~~~~~V~-SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
|+.-.++-++|++++++++|||.-+.-+ +.-|.|-...++ +++.|++ |+|=+- |+..+.=|.+.
T Consensus 167 g~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~-------g~DFiVg----SGHKsm--AAs~PiGvl~~ 231 (382)
T COG1103 167 GEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEI-------GADFIVG----SGHKSM--AASAPIGVLAM 231 (382)
T ss_pred CCcCCchhhHHHHHHHHHcCCceEeecceeecccccccccc-------CCCEEEe----cCccch--hccCCeeEEee
Confidence 4556788899999999999999655433 244666555443 5666555 444432 33344445553
No 433
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.46 E-value=68 Score=27.12 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=25.2
Q ss_pred EEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhH
Q 032570 27 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 65 (138)
Q Consensus 27 ~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~g 65 (138)
.|...|...+.+.++.+ .++++|++.|...-+.+
T Consensus 183 tVtv~hs~t~~l~~~~~-----~ADIvV~AvG~p~~i~~ 216 (285)
T PRK14191 183 SVSVCHILTKDLSFYTQ-----NADIVCVGVGKPDLIKA 216 (285)
T ss_pred EEEEEeCCcHHHHHHHH-----hCCEEEEecCCCCcCCH
Confidence 45556877777777664 47999999999887653
No 434
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=38.44 E-value=69 Score=21.28 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEc
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILP 30 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~S 30 (138)
.-+.++++...|++.|++|+..-..
T Consensus 26 ~sp~~~kv~~~L~~~gl~~~~~~v~ 50 (89)
T cd03055 26 FCPYAQRARLVLAAKNIPHEVININ 50 (89)
T ss_pred CCchHHHHHHHHHHcCCCCeEEEeC
Confidence 3478999999999999999876554
No 435
>PLN02378 glutathione S-transferase DHAR1
Probab=38.42 E-value=49 Score=25.51 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHH
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEA 38 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~ 38 (138)
-+.+.++.-.|++.|++||++....+..|++.
T Consensus 20 ~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~ 51 (213)
T PLN02378 20 CPFSQRALLTLEEKSLTYKIHLINLSDKPQWF 51 (213)
T ss_pred CcchHHHHHHHHHcCCCCeEEEeCcccCCHHH
Confidence 35788999999999999998888776555433
No 436
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=38.29 E-value=2e+02 Score=22.65 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHh
Q 032570 6 DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSA 45 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~-~V~SaHR~p~~~~~~~~~~ 45 (138)
|..-..++.+.|++-||.+++ .+-..+.+.++++.|.++.
T Consensus 121 d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~ 161 (187)
T cd01452 121 DEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAV 161 (187)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHh
Confidence 444455555666666666543 3333566666666666554
No 437
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.26 E-value=90 Score=26.45 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+++...+.++++||.++..-.+..-+.+++.+.++++.+ ...+=|++
T Consensus 39 as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlv 90 (287)
T PRK14181 39 ASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILV 90 (287)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 3456777888899999999999999999999999999988854 34444443
No 438
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=38.20 E-value=1.4e+02 Score=24.86 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=45.7
Q ss_pred CcCCHHHHHHHHH-HHHHh-CCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh
Q 032570 3 SDLDLPVMNDAAR-TLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA 68 (138)
Q Consensus 3 S~SD~~~~~~~~~-~L~~~-gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva 68 (138)
|+|==+.++...+ .|.+| +++++++..+.-|+.+++.++++.++.+.. +|.-.=....|.-.+-
T Consensus 5 SDstGeTAe~v~~A~l~QF~~~~~~~~~~p~I~~~~~~~~il~~i~~~~~--iV~~Tlv~~~lr~~l~ 70 (255)
T PF03618_consen 5 SDSTGETAETVARAALAQFPDVEFEIHRFPFIRTEEQLDEILEEIKEENA--IVFYTLVDPELREYLE 70 (255)
T ss_pred ecCchHHHHHHHHHHHHhCCCCceEEEECCCcCCHHHHHHHHHHHhccCC--EEEEeCCCHHHHHHHH
Confidence 3444456666655 56789 899999999999999999999998877544 4444444555665554
No 439
>PRK00865 glutamate racemase; Provisional
Probab=38.19 E-value=41 Score=27.29 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=25.8
Q ss_pred CCchHHHHHH----HHhhhcCCeEEEE-ecCcCC-chhHHhhhccCCcEEEe
Q 032570 33 QNCKEALSYA----LSAKERGIKIIIV-GDGVEA-HLSGVAAANSQILVIRV 78 (138)
Q Consensus 33 R~p~~~~~~~----~~~~~~~~~viIa-~AG~~a-~L~gvva~~t~~PVIgv 78 (138)
|+.+++.++. +..++.|++.+|. +-..++ ++ --+-....+||||+
T Consensus 47 ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l-~~lr~~~~iPvigi 97 (261)
T PRK00865 47 KSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVAL-PDLRERYDIPVVGI 97 (261)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHH-HHHHHhCCCCEEee
Confidence 6666666655 4556678884333 332222 23 33445678999994
No 440
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=38.15 E-value=48 Score=27.21 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=31.2
Q ss_pred HHHHHHhhh-cCCeEEEEecCcCCchhHHhhhc----cCCcEEEec
Q 032570 39 LSYALSAKE-RGIKIIIVGDGVEAHLSGVAAAN----SQILVIRVP 79 (138)
Q Consensus 39 ~~~~~~~~~-~~~~viIa~AG~~a~L~gvva~~----t~~PVIgvP 79 (138)
.|+.++... ..++.||+..|.-+.+.|+..+. -..+||+|=
T Consensus 158 ~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~ 203 (311)
T TIGR01275 158 LEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVA 203 (311)
T ss_pred HHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 455555532 25899999999999999998885 356899984
No 441
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=38.02 E-value=82 Score=22.60 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCC-CchHHHHHHH
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYAL 43 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR-~p~~~~~~~~ 43 (138)
+.|++|.+.|++-|++|+++=.--+. +.+++.++++
T Consensus 11 ~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 11 ANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred HHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 57899999999999999876443443 5567777765
No 442
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.97 E-value=59 Score=27.68 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=34.8
Q ss_pred EEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 27 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 27 ~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
.|...||.+..+.++.+ .++++|++.|....+..+..- ...=||-|-++
T Consensus 185 tVtv~~~~t~~l~e~~~-----~ADIVIsavg~~~~v~~~~ik-~GaiVIDvgin 233 (301)
T PRK14194 185 SVTVVHSRSTDAKALCR-----QADIVVAAVGRPRLIDADWLK-PGAVVIDVGIN 233 (301)
T ss_pred EEEEECCCCCCHHHHHh-----cCCEEEEecCChhcccHhhcc-CCcEEEEeccc
Confidence 45556888877777664 479999999999988887632 22337777654
No 443
>PRK01905 DNA-binding protein Fis; Provisional
Probab=37.94 E-value=30 Score=23.15 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.2
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 032570 116 YAVKVLGIADEDLLERIRKYV 136 (138)
Q Consensus 116 ~AaqIl~~~~~~l~~kl~~~~ 136 (138)
-|+++|+++...++.|++.|.
T Consensus 55 ~aAr~LGIsrstL~rklkk~g 75 (77)
T PRK01905 55 LAAEYLGINRNTLRKKLQQHG 75 (77)
T ss_pred HHHHHHCCCHHHHHHHHHHhC
Confidence 357899999999999999874
No 444
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=37.91 E-value=1.6e+02 Score=27.27 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=46.8
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEE---ccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhH
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 65 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V~---SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~g 65 (138)
+.+|.+-++++.+..++.|...+..|+ |.--+++.+.++++.+.+-|++ .|+++=+.+.|-.
T Consensus 119 ~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad-~i~i~Dt~G~l~P 183 (593)
T PRK14040 119 AMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVD-SLCIKDMAGLLKP 183 (593)
T ss_pred eCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCC-EEEECCCCCCcCH
Confidence 458999999999999999997666555 4433788899999988888887 4566666665543
No 445
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=37.83 E-value=1.1e+02 Score=26.00 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCC----chhHHhhhcc-CCcEEEecCCC
Q 032570 12 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA----HLSGVAAANS-QILVIRVPLLS 82 (138)
Q Consensus 12 ~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a----~L~gvva~~t-~~PVIgvP~~~ 82 (138)
-+...|+++|+.......-.| .++.+.+.++++.+++++++|+-.|++- ..|..+...- ..=.-++|+..
T Consensus 183 ~l~~~L~~~G~~v~~~~iv~D-d~~~I~~ai~~~~~~g~DlIItTGGtsvg~~D~tp~Ai~~~G~ei~~~Gv~v~P 257 (312)
T cd03522 183 VLRARLAALGVELVEQVIVPH-DEAAIAAAIAEALEAGAELLILTGGASVDPDDVTPAAIRAAGGEVIRYGMPVDP 257 (312)
T ss_pred HHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHHhcCCCCEEEEeCCcccCCcchHHHHHHhcCceEEEeeecccC
Confidence 345568899986443333232 3455666666665557899999888764 3444444332 11123555543
No 446
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=37.80 E-value=91 Score=18.66 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 42 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~ 42 (138)
.=+.|.++...|++.|++|...- ....++...++.
T Consensus 9 ~c~~c~~~~~~l~~~~i~~~~~~--i~~~~~~~~~~~ 43 (73)
T cd02976 9 DCPYCKATKRFLDERGIPFEEVD--VDEDPEALEELK 43 (73)
T ss_pred CChhHHHHHHHHHHCCCCeEEEe--CCCCHHHHHHHH
Confidence 34788999999999999876433 333444333443
No 447
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=37.79 E-value=25 Score=29.99 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.6
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 032570 116 YAVKVLGIADEDLLERIRKYV 136 (138)
Q Consensus 116 ~AaqIl~~~~~~l~~kl~~~~ 136 (138)
-||++|+++..-||.||++|.
T Consensus 435 ~aA~~LGisr~tL~rkl~~~~ 455 (457)
T PRK11361 435 RTALMLGISRRALMYKLQEYG 455 (457)
T ss_pred HHHHHHCCCHHHHHHHHHHhC
Confidence 478999999999999999984
No 448
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=37.72 E-value=74 Score=22.57 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHhCC-------------------CeEEEEEccCCCchHHHHHHHHhh
Q 032570 6 DLPVMNDAARTLSDFGV-------------------PYEIKILPPHQNCKEALSYALSAK 46 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi-------------------~~~~~V~SaHR~p~~~~~~~~~~~ 46 (138)
|-++=+++..+|+++|+ |+|+++-| =+++.+-+++..
T Consensus 12 D~~vK~eA~~Vl~~mGlt~S~airm~L~~va~~~~lPfdl~~p~----N~~tl~ai~e~~ 67 (88)
T COG3077 12 DDEVKEEATAVLEEMGLTISDAIRMFLTKVAREGALPFDLRLPS----NAETLQAIKELD 67 (88)
T ss_pred cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCCCccccCcc----cHHHHHHHHHHH
Confidence 77788899999999998 67887776 355555555554
No 449
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=37.71 E-value=97 Score=24.59 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEE
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 53 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~vi 53 (138)
++.++++.+.++++|++.++-++|. |+|+++.+..+ -|++++
T Consensus 141 ~~~i~~i~~~~~~~~~~tkil~As~-r~~~ei~~a~~----~Gad~v 182 (211)
T cd00956 141 MELIREIRTIFDNYGFDTKILAASI-RNPQHVIEAAL----AGADAI 182 (211)
T ss_pred HHHHHHHHHHHHHcCCCceEEeccc-CCHHHHHHHHH----cCCCEE
Confidence 4678889999999999988888876 67777766432 355544
No 450
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.60 E-value=1.6e+02 Score=24.30 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcc----------------------CCCchHHHHHHHHhhhcCCeEEEEe
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPP----------------------HQNCKEALSYALSAKERGIKIIIVG 56 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~Sa----------------------HR~p~~~~~~~~~~~~~~~~viIa~ 56 (138)
+...+++..+.+++.|||+|+-+.-. +|-|+ ..+++++.+++|.++++-+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEe
Confidence 45567888889999999999876631 23343 5678888888899977654
No 451
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=37.58 E-value=39 Score=27.90 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEc--cCC----Cch-HHHHHHHHhhhcCCeEEEEecCcCCch---h----HHhhh
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILP--PHQ----NCK-EALSYALSAKERGIKIIIVGDGVEAHL---S----GVAAA 69 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~S--aHR----~p~-~~~~~~~~~~~~~~~viIa~AG~~a~L---~----gvva~ 69 (138)
..|.+..+++.+.|+++|....+.=.. .|. +++ |..++.+-..+..++.|++.-|+.+.. | ..+..
T Consensus 10 ~~~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~~rlL~~ld~~~i~~ 89 (284)
T PF02016_consen 10 PIDPERLERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGANRLLPYLDYDAIRK 89 (284)
T ss_dssp HHCHHHHHHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-GGGGGGGCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccHHHHHhccccccccc
Confidence 457788999999999999865442111 111 333 444454555677889999999986642 2 23444
Q ss_pred ccCCcEEEe
Q 032570 70 NSQILVIRV 78 (138)
Q Consensus 70 ~t~~PVIgv 78 (138)
+ ++++||.
T Consensus 90 ~-pK~~iGy 97 (284)
T PF02016_consen 90 N-PKIFIGY 97 (284)
T ss_dssp S-G-EEEE-
T ss_pred C-CCEEEEe
Confidence 4 7888873
No 452
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=37.47 E-value=1.8e+02 Score=21.93 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
...+.+.+.++++|+... +...-...+....+.+...++.++.||..+..... + .+. -.-..|||.+
T Consensus 20 ~~~~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-~-~~~~~~~~~ipvV~~ 88 (268)
T cd06271 20 EFLSGLSEALAEHGYDLV--LLPVDPDEDPLEVYRRLVESGLVDGVIISRTRPDD-P-RVALLLERGFPFVTH 88 (268)
T ss_pred HHHHHHHHHHHHCCceEE--EecCCCcHHHHHHHHHHHHcCCCCEEEEecCCCCC-h-HHHHHHhcCCCEEEE
Confidence 456777888889987544 44332333333333333344568877776543221 1 221 2346798876
No 453
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.29 E-value=1.1e+02 Score=26.15 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+++.-.+.++++||.++..-.+..-+.+++.+.+++..+ ...+=||+
T Consensus 46 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlv 97 (301)
T PRK14194 46 ASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILL 97 (301)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEE
Confidence 4455777788899999999999999998899999999988754 34444444
No 454
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=37.16 E-value=48 Score=31.63 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=32.8
Q ss_pred hHHHHHHHHhhhcCCeEEEEecCcCCchhH-Hhhh------ccCCcEEEecCCC
Q 032570 36 KEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA------NSQILVIRVPLLS 82 (138)
Q Consensus 36 ~~~~~~~~~~~~~~~~viIa~AG~~a~L~g-vva~------~t~~PVIgvP~~~ 82 (138)
+...+++++.++.+++.+|++-|-...-.. .++- ....|||+||-.-
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTI 518 (745)
T TIGR02478 465 KDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATI 518 (745)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccc
Confidence 567778888888899999988776533322 2221 1469999999763
No 455
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.15 E-value=1e+02 Score=26.26 Aligned_cols=51 Identities=16% Similarity=0.054 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
.+.-+++...+.++++||.+++.-.+..-+.+++.+.+++..+ ...+=||.
T Consensus 46 as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIiv 97 (297)
T PRK14168 46 ASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILV 97 (297)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4456677778899999999999888888899999999988854 34454554
No 456
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.03 E-value=1.2e+02 Score=25.86 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+++...+.++++|+.++..-.+..-+.+++.+.+++..+ ...+=||+
T Consensus 45 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlv 96 (294)
T PRK14187 45 ASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILV 96 (294)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4566777788899999999999999998888899998887754 34444444
No 457
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=37.01 E-value=45 Score=27.50 Aligned_cols=47 Identities=4% Similarity=-0.077 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccC--------Cc-EEEecCCCC
Q 032570 37 EALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ--------IL-VIRVPLLSE 83 (138)
Q Consensus 37 ~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~--------~P-VIgvP~~~~ 83 (138)
-..|+.++.....++.|++..|..+.+.|+..++.. .| |++|=+.+.
T Consensus 163 ~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~ 218 (328)
T TIGR00260 163 YAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGA 218 (328)
T ss_pred HHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCC
Confidence 445566666433589999999999999999998753 45 777766543
No 458
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=36.93 E-value=1.1e+02 Score=25.97 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
.+.-+.+...+.++++|+.++..-.+..-+.+++.+.+++..+ ...+=||.
T Consensus 52 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlv 103 (299)
T PLN02516 52 DSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILV 103 (299)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 4456677778899999999999999999999999999988754 34444444
No 459
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.92 E-value=1.1e+02 Score=25.47 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhc
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 48 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~ 48 (138)
+.-+.+--.+.++++|+++++.-.+.+-+++++.+++++..++
T Consensus 47 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d 89 (283)
T PRK14192 47 SATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNAN 89 (283)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445566667789999999999998899999999999888654
No 460
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=36.84 E-value=2.6e+02 Score=23.61 Aligned_cols=109 Identities=12% Similarity=0.125 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHH-hCCCeEEEE--EccC-CCchHHHHHHHHhhhcCCeEEEEecCcCC----------------chh
Q 032570 5 LDLPVMNDAARTLSD-FGVPYEIKI--LPPH-QNCKEALSYALSAKERGIKIIIVGDGVEA----------------HLS 64 (138)
Q Consensus 5 SD~~~~~~~~~~L~~-~gi~~~~~V--~SaH-R~p~~~~~~~~~~~~~~~~viIa~AG~~a----------------~L~ 64 (138)
.|.+.+.++.+.+.+ .++|..+++ ..-+ .+.+.+.++++..++.|++.|++- |+.. .+.
T Consensus 116 ~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh-~Rt~~~~g~~~~~~~~~~~~~~~ 194 (333)
T PRK11815 116 AEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVH-ARKAWLKGLSPKENREIPPLDYD 194 (333)
T ss_pred cCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEc-CCchhhcCCCccccccCCCcCHH
Confidence 577788888877764 678877754 3222 234677888888888888877654 3321 122
Q ss_pred HH--hhhc-cCCcEEEecCCCCCCCchhhhhhhcCCCCCeeeEEecCCchhHHHHH
Q 032570 65 GV--AAAN-SQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYA 117 (138)
Q Consensus 65 gv--va~~-t~~PVIgvP~~~~~~~G~dLlS~lqmP~GvpvatV~I~~~~nAA~~A 117 (138)
-+ +... +..|||+. ++-....|...++.-..||-++.-.+.|+.-.....
T Consensus 195 ~i~~v~~~~~~iPVI~n---GgI~s~eda~~~l~~aDgVmIGRa~l~nP~~~~~~~ 247 (333)
T PRK11815 195 RVYRLKRDFPHLTIEIN---GGIKTLEEAKEHLQHVDGVMIGRAAYHNPYLLAEVD 247 (333)
T ss_pred HHHHHHHhCCCCeEEEE---CCcCCHHHHHHHHhcCCEEEEcHHHHhCCHHHHHHH
Confidence 21 2222 47888873 222233334444432445555555555666544443
No 461
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=36.83 E-value=1.5e+02 Score=25.82 Aligned_cols=15 Identities=7% Similarity=0.220 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhCCCe
Q 032570 10 MNDAARTLSDFGVPY 24 (138)
Q Consensus 10 ~~~~~~~L~~~gi~~ 24 (138)
.++.+..|+++|+++
T Consensus 180 ~~el~~lL~~~Gi~v 194 (427)
T PRK02842 180 EDQLTLEFKKLGIGV 194 (427)
T ss_pred HHHHHHHHHHcCCee
Confidence 367778888888765
No 462
>PRK00768 nadE NAD synthetase; Reviewed
Probab=36.75 E-value=1.8e+02 Score=24.25 Aligned_cols=96 Identities=22% Similarity=0.291 Sum_probs=50.3
Q ss_pred HHHHHhCCCeEEEEEccCCCchHHHHHHHHh-hhcC-CeEEEEecCc-CCchhHHhhhcc---CCc--------EEEecC
Q 032570 15 RTLSDFGVPYEIKILPPHQNCKEALSYALSA-KERG-IKIIIVGDGV-EAHLSGVAAANS---QIL--------VIRVPL 80 (138)
Q Consensus 15 ~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~-~~~~-~~viIa~AG~-~a~L~gvva~~t---~~P--------VIgvP~ 80 (138)
++.++|++.-.+. .-..-+++.+|++++ ++.+ -.+++.+.|+ ..+|...++... ..| +++++.
T Consensus 5 ~~~~~~~~~~~~~---~~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~m 81 (268)
T PRK00768 5 EIIAELGVKPTID---PEEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRL 81 (268)
T ss_pred HHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEEC
Confidence 4557777753221 001113444455433 3333 3588888887 444444433322 233 899988
Q ss_pred CCCCCCc-hh---hhhhhcCCCCC-eeeEEecCCchhHHHHH
Q 032570 81 LSEDWSE-DD---VINSIRMPSHV-QVASVPRNNAKNAALYA 117 (138)
Q Consensus 81 ~~~~~~G-~d---LlS~lqmP~Gv-pvatV~I~~~~nAA~~A 117 (138)
+...-.. -| +...+ |+ ..-++.|+....+-...
T Consensus 82 P~~~~~~~~da~~la~~l----gi~~~~~i~I~~~~~~~~~~ 119 (268)
T PRK00768 82 PYGVQADEDDAQDALAFI----QPDRVLTVNIKPAVDASVAA 119 (268)
T ss_pred CCCCcCCHHHHHHHHHhc----CCCeeEEEECHHHHHHHHHH
Confidence 8532222 22 33333 44 58889988777776544
No 463
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.72 E-value=99 Score=26.15 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+.+...+.++++|+.++..-.+..-+.+++.+.+++..+ ...+=||+
T Consensus 44 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIiv 95 (284)
T PRK14170 44 ASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILV 95 (284)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 4556777788899999999999999999888999998887744 34444444
No 464
>PF01922 SRP19: SRP19 protein; InterPro: IPR002778 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the SRP19 subunit. The SRP19 protein is unstructured but forms a compact core domain and two extended RNA-binding loops upon binding the signal recognition particle (SRP) RNA [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 3DLU_A 3DLV_B 2J37_B 1MFQ_B 3KTV_D 1RY1_B 1JID_A 1KVV_A 1KVN_A 3KTW_B ....
Probab=36.71 E-value=34 Score=24.11 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHhCCCeEE
Q 032570 6 DLPVMNDAARTLSDFGVPYEI 26 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~ 26 (138)
+-|.++|+.+.|+++|++|.+
T Consensus 27 ~~P~~~EI~~a~~~Lgl~~~~ 47 (95)
T PF01922_consen 27 ENPTLEEIADACKKLGLPCVV 47 (95)
T ss_dssp SS--HHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHcCCCEEE
Confidence 568999999999999999873
No 465
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=36.69 E-value=1.6e+02 Score=24.72 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=43.9
Q ss_pred CcCCHHHHHHHHH-HHHHh-CCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHh
Q 032570 3 SDLDLPVMNDAAR-TLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 67 (138)
Q Consensus 3 S~SD~~~~~~~~~-~L~~~-gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvv 67 (138)
|+|=-+.++.... .|.+| +++++.+..+.-|+.+++.+++++.+.+.+-||-++. ...|--.+
T Consensus 11 SDstGeTAe~v~~A~l~QF~~~~~~~~~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv--~~elr~~l 75 (269)
T PRK05339 11 SDSTGETAETVGRAALSQFPNVEFEEHRYPFVRTEEKADEVLEEINAERPIVFYTLV--DPELREIL 75 (269)
T ss_pred eCCHHHHHHHHHHHHHHhCCCCCeeEEEeCCcCCHHHHHHHHHHHHhcCCEEEEeCC--CHHHHHHH
Confidence 4444566777665 56789 5888989999999999999999988765554444433 33344443
No 466
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.65 E-value=1.9e+02 Score=21.90 Aligned_cols=68 Identities=6% Similarity=0.008 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEe
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgv 78 (138)
...+.+.+.++++|+. +.+...=..+++..++++.....+++-+|...-....+.-. ...-..||+.+
T Consensus 17 ~~~~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~-~~~~~ipvv~~ 84 (269)
T cd06288 17 EIILGAQDAAREHGYL--LLVVNTGGDDELEAEAVEALLDHRVDGIIYATMYHREVTLP-PELLSVPTVLL 84 (269)
T ss_pred HHHHHHHHHHHHCCCE--EEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCChhHHH-HHhcCCCEEEE
Confidence 4556777888888865 44444333456666777777777888777654333333222 12235677654
No 467
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=36.57 E-value=1.2e+02 Score=24.33 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=40.0
Q ss_pred eEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh-ccCCcEEEecCCC
Q 032570 24 YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRVPLLS 82 (138)
Q Consensus 24 ~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~-~t~~PVIgvP~~~ 82 (138)
+..+..+-.-.|++-.+..+.+.++|++||.+.+ ..++.+-|+ ....++||+-.+-
T Consensus 154 v~~~~~g~~~D~~~a~~~a~~l~~~G~DvI~~~~---~~~g~~~aa~~~g~~~IG~d~dq 210 (258)
T cd06353 154 VKVIWTGSWFDPAKEKEAALALIDQGADVIYQHT---DSPGVIQAAEEKGVYAIGYVSDM 210 (258)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHCCCcEEEecC---CChHHHHHHHHhCCEEEeeccch
Confidence 4456666677889989999888888999999988 334333333 3568999986543
No 468
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=36.53 E-value=1e+02 Score=21.76 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCc
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 59 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~ 59 (138)
+...+.+....|+..|+.+++-.. |...+-. ++++..++..+|.+...
T Consensus 40 ~~~~a~~la~~LR~~gi~v~~d~~---~sl~kql---k~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 40 LVEIAKEISEELRELGFSVKYDDS---GSIGRRY---ARQDEIGTPFCVTVDFD 87 (121)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCC---CCHHHHH---HHhHhcCCCEEEEECcC
Confidence 456777778888888988776542 5444444 44556677766665544
No 469
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=36.42 E-value=2.4e+02 Score=23.07 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=50.5
Q ss_pred HHHHHHHhCCCeEEEEEccC-CCchHHHHHHHHhhhcCCeEEE-EecCcCCchhHHhhhccCCcEE
Q 032570 13 AARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIII-VGDGVEAHLSGVAAANSQILVI 76 (138)
Q Consensus 13 ~~~~L~~~gi~~~~~V~SaH-R~p~~~~~~~~~~~~~~~~viI-a~AG~~a~L~gvva~~t~~PVI 76 (138)
..+--..++.++.+-++|+. -+.+++.+-.++...+|+++|+ =+=|-.-..--.++..+.+|||
T Consensus 141 ~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVl 206 (221)
T PF07302_consen 141 QAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKPVL 206 (221)
T ss_pred HHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCCEE
Confidence 33334567778888889977 8888888888888888999655 4778888888888888999988
No 470
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=36.40 E-value=54 Score=20.57 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEc
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILP 30 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~S 30 (138)
.|--+.+.++...|+..|++|+..-..
T Consensus 13 ~s~sp~~~~v~~~L~~~~i~~~~~~~~ 39 (72)
T cd03054 13 PSLSPECLKVETYLRMAGIPYEVVFSS 39 (72)
T ss_pred CCCCHHHHHHHHHHHhCCCceEEEecC
Confidence 345588999999999999999976543
No 471
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=36.29 E-value=57 Score=27.63 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=41.4
Q ss_pred CcCCHHHHHHHHHHHHHhCC-CeEEEEEccCCC-----chHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh-ccCCcE
Q 032570 3 SDLDLPVMNDAARTLSDFGV-PYEIKILPPHQN-----CKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILV 75 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi-~~~~~V~SaHR~-----p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~-~t~~PV 75 (138)
+..|..+..... +.|++ ..++..-+--.+ ...+.++-+..+...++++++..=+...|++.+|+ ....||
T Consensus 18 ~H~~~~~g~~~~---~~f~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv 94 (346)
T PF02350_consen 18 QHLDPEMGDTFF---EGFGIPKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPV 94 (346)
T ss_dssp SS--CHHHHHHH---HHTT--SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EE
T ss_pred CCCCHHHHHHHH---hhCCCCCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCE
Confidence 333444444433 48888 445555422221 22233333445567899999999999999987776 589999
Q ss_pred EEec
Q 032570 76 IRVP 79 (138)
Q Consensus 76 IgvP 79 (138)
+.+=
T Consensus 95 ~Hie 98 (346)
T PF02350_consen 95 AHIE 98 (346)
T ss_dssp EEES
T ss_pred EEec
Confidence 9864
No 472
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=36.10 E-value=95 Score=21.22 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeE
Q 032570 13 AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 52 (138)
Q Consensus 13 ~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~v 52 (138)
++..|++.|. |+.+..+...++++.+.++ +..+++
T Consensus 20 la~~l~~~G~--~v~~~d~~~~~~~l~~~~~---~~~pd~ 54 (121)
T PF02310_consen 20 LAAYLRKAGH--EVDILDANVPPEELVEALR---AERPDV 54 (121)
T ss_dssp HHHHHHHTTB--EEEEEESSB-HHHHHHHHH---HTTCSE
T ss_pred HHHHHHHCCC--eEEEECCCCCHHHHHHHHh---cCCCcE
Confidence 4456666655 5555555555555544433 234555
No 473
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=35.99 E-value=1.9e+02 Score=21.77 Aligned_cols=69 Identities=4% Similarity=0.000 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh--hccCCcEEEe
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 78 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva--~~t~~PVIgv 78 (138)
....+.+.+.++++|+.+. +...-..+++..+.++....++++.+|...+.....+ .+. -.-..||+.+
T Consensus 15 ~~~~~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~-~~~~~~~~~ipvV~~ 85 (266)
T cd06282 15 AECVQGIQEEARAAGYSLL--LATTDYDAEREADAVETLLRQRVDGLILTVADAATSP-ALDLLDAERVPYVLA 85 (266)
T ss_pred HHHHHHHHHHHHHCCCEEE--EeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchH-HHHHHhhCCCCEEEE
Confidence 3455677778888886544 4444456777777887777778998887655433222 222 2345788765
No 474
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=35.95 E-value=1.8e+02 Score=26.62 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=48.7
Q ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEE----EccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHH
Q 032570 3 SDLDLPVMNDAARTLSDFGVPYEIKI----LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV 66 (138)
Q Consensus 3 S~SD~~~~~~~~~~L~~~gi~~~~~V----~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gv 66 (138)
+.||.+.++.+.+..++.|...+..| ...| +++.+.++++++.+-|++ .|+++=+.+.|-.-
T Consensus 119 ~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~-t~e~~~~~a~~l~~~Gad-~I~IkDtaGll~P~ 184 (499)
T PRK12330 119 ALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIH-TVEGFVEQAKRLLDMGAD-SICIKDMAALLKPQ 184 (499)
T ss_pred cCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCC-CHHHHHHHHHHHHHcCCC-EEEeCCCccCCCHH
Confidence 46899999999999999998765544 3344 899999999998888887 56777777776643
No 475
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=35.81 E-value=2.2e+02 Score=24.45 Aligned_cols=96 Identities=9% Similarity=0.101 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHH-----------HHHHHhhhcCCeEEEEec-CcCCchhHHhhhccCCc
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL-----------SYALSAKERGIKIIIVGD-GVEAHLSGVAAANSQIL 74 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~-----------~~~~~~~~~~~~viIa~A-G~~a~L~gvva~~t~~P 74 (138)
.+..+++.+..+++|++..+++.- ++++.. ++++...--+.+++++=+ ..+..--..++ .+..-
T Consensus 204 ~~~l~~~~~lA~~~g~~i~~H~~E---~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la-~~g~~ 279 (442)
T PRK07203 204 DATLEKCREAVKETGRGYHIHVAE---GIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLK-ETDTF 279 (442)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecC---ChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHH-hcCCe
Confidence 467889999999999999998763 233222 222222222445544432 22332233443 56678
Q ss_pred EEEecCCCCCC-Cchh-hhhhhcCCCCCeeeEEecCC
Q 032570 75 VIRVPLLSEDW-SEDD-VINSIRMPSHVQVASVPRNN 109 (138)
Q Consensus 75 VIgvP~~~~~~-~G~d-LlS~lqmP~GvpvatV~I~~ 109 (138)
|+.||.+.-.+ .|.- +.-+++ .|+.|+ ++.|+
T Consensus 280 v~~~P~sn~~l~~g~~p~~~~~~--~Gv~v~-lGtD~ 313 (442)
T PRK07203 280 VVHNPESNMGNAVGYNPVLEMIK--NGILLG-LGTDG 313 (442)
T ss_pred EEECchhhhhcccCCCCHHHHHH--CCCeEE-EcCCC
Confidence 99999876433 3555 676666 687765 45554
No 476
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=35.75 E-value=97 Score=22.10 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhh--ccCCcEEEecCC
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRVPLL 81 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~--~t~~PVIgvP~~ 81 (138)
-.+++..+.+++.|+++++.=++. .++.++. ...++++|+..--..=.+.-+-.- ....||..+|+.
T Consensus 16 lla~k~k~~~~e~gi~~~i~a~~~----~e~~~~~---~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I~~~ 84 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDAITA----TEGEKAI---AAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQIPPQ 84 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEEecH----HHHHHhh---ccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEeCHH
Confidence 678999999999999988876665 3443332 234578888755555455555432 345688887775
No 477
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=35.72 E-value=26 Score=29.34 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.8
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 032570 116 YAVKVLGIADEDLLERIRKYV 136 (138)
Q Consensus 116 ~AaqIl~~~~~~l~~kl~~~~ 136 (138)
-||+.|+++...||.||++|.
T Consensus 304 ~aA~~LGIsR~tLyrklk~~g 324 (326)
T PRK11608 304 RAAELLGLTYHQLRALLKKHQ 324 (326)
T ss_pred HHHHHhCCCHHHHHHHHHHcC
Confidence 478899999999999999984
No 478
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=35.68 E-value=1.5e+02 Score=24.68 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeE
Q 032570 7 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 52 (138)
Q Consensus 7 ~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~v 52 (138)
...+.+..+.|++.|+++.+...--..+.+++.++++.+.+.|++-
T Consensus 131 f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~~ 176 (358)
T TIGR02109 131 FEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGADR 176 (358)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCCE
Confidence 4555667778889999988877656667788888888777767663
No 479
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.67 E-value=1.1e+02 Score=25.91 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+.+...+.++++|+.++..-.+.+-+.+++.+.+++..+ ...+=|+.
T Consensus 44 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlv 95 (281)
T PRK14183 44 ASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILV 95 (281)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEE
Confidence 4556777788899999999999998888888999999987743 34444444
No 480
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=35.66 E-value=3.4e+02 Score=24.61 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=46.0
Q ss_pred HHHHHHHHHHH-hCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEEecCc----CCchhHHhhhccCCcEEEecCC
Q 032570 9 VMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIVGDGV----EAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 9 ~~~~~~~~L~~-~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa~AG~----~a~L~gvva~~t~~PVIgvP~~ 81 (138)
+.+++.+-|+. -.+|+++.--+.-.++++..++.+++.. .+++.+|+.-.. ..-+++ +....+||+-.=+.
T Consensus 24 ~~~~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~i~~--~~~l~~PvL~~~~q 100 (484)
T cd03557 24 HSREIVDGLNASGKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTFSPAKMWIAG--LTALQKPLLHLHTQ 100 (484)
T ss_pred HHHHHHHHhcccCCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCCchHHHHHHH--HHHcCCCEEEEccC
Confidence 45555555554 2268899999999999999999887753 567766664332 111222 34567888865554
No 481
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=35.63 E-value=1.4e+02 Score=26.06 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEe---------cCc--CCchhHHhhhccCCcEEE
Q 032570 13 AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG---------DGV--EAHLSGVAAANSQILVIR 77 (138)
Q Consensus 13 ~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~---------AG~--~a~L~gvva~~t~~PVIg 77 (138)
+.+.+++-++...+|+ +|+...++++...+.|+++|+.- .|. -..|.-++. ....|||+
T Consensus 124 ii~~vr~a~VtvkiRl-----~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~-~~~IPVI~ 193 (369)
T TIGR01304 124 RIAEVRDSGVITAVRV-----SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIG-ELDVPVIA 193 (369)
T ss_pred HHHHHHhcceEEEEec-----CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHH-HCCCCEEE
Confidence 3333333344444444 56677888888888899987753 121 111444554 45789995
No 482
>PRK03094 hypothetical protein; Provisional
Probab=35.62 E-value=65 Score=22.43 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=17.2
Q ss_pred EEecCcCCchhHHhhhccCCcEEE
Q 032570 54 IVGDGVEAHLSGVAAANSQILVIR 77 (138)
Q Consensus 54 Ia~AG~~a~L~gvva~~t~~PVIg 77 (138)
+++.|...-+-|+=...|..|||.
T Consensus 39 ~VitG~d~n~mgi~d~~t~~pVI~ 62 (80)
T PRK03094 39 CVVTGQDSNVMGIADTSTKGSVIT 62 (80)
T ss_pred EEEeCCCcceecccccccCCcEEE
Confidence 456777777777666677778875
No 483
>PRK15115 response regulator GlrR; Provisional
Probab=35.61 E-value=27 Score=29.74 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=17.7
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 032570 116 YAVKVLGIADEDLLERIRKYV 136 (138)
Q Consensus 116 ~AaqIl~~~~~~l~~kl~~~~ 136 (138)
-||+.|+++..-||.||++|.
T Consensus 416 ~aA~~Lgisr~tL~rkl~~~~ 436 (444)
T PRK15115 416 HAARMAGRNRTEFYKLLSRHE 436 (444)
T ss_pred HHHHHhCCCHHHHHHHHHHhC
Confidence 468889999999999999874
No 484
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=35.55 E-value=1.3e+02 Score=25.18 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEE
Q 032570 4 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 53 (138)
Q Consensus 4 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~vi 53 (138)
...++.+.+..+.|.+.|+++.+++.--.-+.+++.++++..++.+++.+
T Consensus 140 ~~~f~~v~~~i~~l~~~~~~~~i~~~v~~~n~~~l~~i~~~~~~~g~~~~ 189 (370)
T PRK13758 140 LDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKIYKYFKEKDFKFL 189 (370)
T ss_pred CccHHHHHHHHHHHHHhCCCceEEEEeccccccCHHHHHHHHHHcCCCeE
Confidence 44567777778888899999888766555566778888877777777643
No 485
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.44 E-value=1.2e+02 Score=25.61 Aligned_cols=51 Identities=18% Similarity=0.105 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+.+...+.++++|+.++..-.+..-+.+++.+.+++..+ ...+=|++
T Consensus 39 as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 90 (279)
T PRK14178 39 ASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILV 90 (279)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 4456777788899999999999999999999999999988744 34444444
No 486
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=35.16 E-value=41 Score=21.85 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcc
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPP 31 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~Sa 31 (138)
+.-+.+.++.-.|+..|++|+......
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~ 40 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEF 40 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecC
Confidence 456789999999999999999875543
No 487
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.11 E-value=2.8e+02 Score=23.45 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHH-HhCCCeEEEEEccC---CCchHHHHHHHHhhhcCCeEEEEecC
Q 032570 5 LDLPVMNDAARTLS-DFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDG 58 (138)
Q Consensus 5 SD~~~~~~~~~~L~-~~gi~~~~~V~SaH---R~p~~~~~~~~~~~~~~~~viIa~AG 58 (138)
.|.+.++++.+.+. ..++|..+++---. -+.+.+.++++.+++.|++.|.+=++
T Consensus 106 ~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgR 163 (318)
T TIGR00742 106 GNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHAR 163 (318)
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 57778888888886 46888777765322 23467778888888889888654443
No 488
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.00 E-value=1.2e+02 Score=25.69 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhh-cCCeEEEE
Q 032570 5 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIV 55 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~-~~~~viIa 55 (138)
++.-+++...+.++++|+.++..-.+..-+.+++.+.++...+ ...+=||.
T Consensus 43 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIiv 94 (282)
T PRK14182 43 ASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILV 94 (282)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4556677778899999999999999888899999998887744 34444444
No 489
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=34.98 E-value=1.3e+02 Score=21.25 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 42 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~ 42 (138)
.=+.|+++.+.|++.|++|+.+= ..+.|....++.
T Consensus 8 ~C~~c~ka~~~L~~~~i~~~~id--i~~~~~~~~el~ 42 (117)
T TIGR01617 8 NCTTCKKARRWLEANGIEYQFID--IGEDGPTREELL 42 (117)
T ss_pred CCHHHHHHHHHHHHcCCceEEEe--cCCChhhHHHHH
Confidence 34789999999999999876433 345555444444
No 490
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.91 E-value=62 Score=27.50 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=34.6
Q ss_pred EEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhHHhhhccCCcEEEecCC
Q 032570 25 EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81 (138)
Q Consensus 25 ~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva~~t~~PVIgvP~~ 81 (138)
+..|...|.....+.++.+ .++++|++.|...-+.+=.--. ..=||-|=+.
T Consensus 185 ~aTVtvchs~T~nl~~~~~-----~ADIvIsAvGkp~~i~~~~vk~-gavVIDvGin 235 (293)
T PRK14185 185 DCTVTVCHSRSKNLKKECL-----EADIIIAALGQPEFVKADMVKE-GAVVIDVGTT 235 (293)
T ss_pred CCEEEEecCCCCCHHHHHh-----hCCEEEEccCCcCccCHHHcCC-CCEEEEecCc
Confidence 3557777888888888775 4799999999988776532211 1126766654
No 491
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=34.91 E-value=1.8e+02 Score=24.32 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEc-------------cCCCchHHHHHHHHhhhcCCeEEEE
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILP-------------PHQNCKEALSYALSAKERGIKIIIV 55 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~S-------------aHR~p~~~~~~~~~~~~~~~~viIa 55 (138)
+...+++..+.+++.|||+|+-++. -.|-|+ ..+++++.+++|.+++.-
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPd-p~~m~~~l~~~g~~~~~~ 83 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPD-PKELIKELHEQGFKVVTI 83 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCC-HHHHHHHHHHCCCEEEEE
Confidence 4566778888889999999987776 346664 467788888889997643
No 492
>PRK09389 (R)-citramalate synthase; Provisional
Probab=34.88 E-value=2.3e+02 Score=25.45 Aligned_cols=61 Identities=15% Similarity=0.013 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCC-chHHHHHHHHhhhcCCeEEEEecCcCCchhHHhh
Q 032570 8 PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA 68 (138)
Q Consensus 8 ~~~~~~~~~L~~~gi~~~~~V~SaHR~-p~~~~~~~~~~~~~~~~viIa~AG~~a~L~gvva 68 (138)
+.+.++.+.+++.|..+++....+.|+ |+.+.++++.+.+-|++.|..+.=.-..+|.-+.
T Consensus 114 ~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~ 175 (488)
T PRK09389 114 ETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGILTPEKTY 175 (488)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHH
Confidence 345555667778898888888888887 5666688888877788876666555555665554
No 493
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=34.69 E-value=1.1e+02 Score=26.59 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=49.1
Q ss_pred HHHHHHHhCCCeEEEEEccCC-----------------------Cc-----hHHHHHHHHhhhcCCeEEEEecCcCCchh
Q 032570 13 AARTLSDFGVPYEIKILPPHQ-----------------------NC-----KEALSYALSAKERGIKIIIVGDGVEAHLS 64 (138)
Q Consensus 13 ~~~~L~~~gi~~~~~V~SaHR-----------------------~p-----~~~~~~~~~~~~~~~~viIa~AG~~a~L~ 64 (138)
|++.|+++||..--+|.+... .| +++.++++++++++ ..|+
T Consensus 133 Ak~~L~~~gI~i~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~g-----------DSlG 201 (344)
T cd07304 133 AKKLLKEFGIEVVAHVKSIGGIEDEPFDLDEEELLEEAEESPVRCPDPEAEEKMKELIDEAKKEG-----------DSVG 201 (344)
T ss_pred HHHHHHHCCcEEEEEEEEECCEecCcccccchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcC-----------CCCc
Confidence 677889999986555555442 11 23444445554432 3344
Q ss_pred HHhhhccCCcEEEecCCCC--CCCchh-hhhhhcCCCCCe-eeEEecCCchhHHH
Q 032570 65 GVAAANSQILVIRVPLLSE--DWSEDD-VINSIRMPSHVQ-VASVPRNNAKNAAL 115 (138)
Q Consensus 65 gvva~~t~~PVIgvP~~~~--~~~G~d-LlS~lqmP~Gvp-vatV~I~~~~nAA~ 115 (138)
|++ ..=|.|||+--+ -++.+| .|+..-|. +| |=-|-|+.++++|.
T Consensus 202 G~v----e~~~~gvP~GLG~p~f~klda~la~a~~s--IpAvKgve~G~Gf~~a~ 250 (344)
T cd07304 202 GVV----EVVATGVPAGLGSPVFDKLDARLAQALMS--IPAVKGVEIGSGFEAAR 250 (344)
T ss_pred eEE----EEEEECCCCCCCccccccchHHHHHHhcC--cCceeEEEECcchhhhh
Confidence 433 333566776422 257888 77777662 22 66677888877664
No 494
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.66 E-value=62 Score=27.42 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=25.7
Q ss_pred EEEEccCCCchHHHHHHHHhhhcCCeEEEEecCcCCchhH
Q 032570 26 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 65 (138)
Q Consensus 26 ~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~~a~L~g 65 (138)
..|...|...+.+.++.+ .++++|++.|...-+.+
T Consensus 189 atVtv~hs~T~~l~~~~~-----~ADIvv~AvG~p~~i~~ 223 (287)
T PRK14176 189 ATVSVCHVFTDDLKKYTL-----DADILVVATGVKHLIKA 223 (287)
T ss_pred CEEEEEeccCCCHHHHHh-----hCCEEEEccCCccccCH
Confidence 366777877777777764 47999999999765543
No 495
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=34.65 E-value=1.4e+02 Score=23.85 Aligned_cols=49 Identities=10% Similarity=0.174 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEEecCc
Q 032570 6 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 59 (138)
Q Consensus 6 D~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa~AG~ 59 (138)
|-+.+.+..+.|.++|.++++.+- .+ ....+.++++.+ +.+++|.=.|+
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~-~~-~l~~l~~l~~~~---~l~ivldH~G~ 156 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFD-AV-DLPALLPFLQKL---PVAVVIDHFGR 156 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeC-Hh-hHHHHHHHHHHC---CCCEEEECCCC
Confidence 667788888888899999988864 33 334556666655 57888887775
No 496
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=34.63 E-value=1.4e+02 Score=19.79 Aligned_cols=43 Identities=9% Similarity=-0.022 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCe
Q 032570 9 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 51 (138)
Q Consensus 9 ~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~ 51 (138)
.+++..+.|++..-.+++.++-.++....+.+.+++...+|++
T Consensus 18 ~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~ 60 (101)
T cd03409 18 DIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQ 60 (101)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 4555555554322123455555555344455666666555544
No 497
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=34.44 E-value=30 Score=29.79 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.9
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 032570 116 YAVKVLGIADEDLLERIRKYV 136 (138)
Q Consensus 116 ~AaqIl~~~~~~l~~kl~~~~ 136 (138)
-||++|+++..-||.||++|.
T Consensus 447 ~aA~~Lgisr~tL~rkl~~~~ 467 (469)
T PRK10923 447 EAARLLGWGRNTLTRKLKELG 467 (469)
T ss_pred HHHHHhCCCHHHHHHHHHHhC
Confidence 378999999999999999984
No 498
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=34.38 E-value=82 Score=23.21 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHhhhcCCeEEEE
Q 032570 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 55 (138)
Q Consensus 11 ~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~~~~~~~~~~viIa 55 (138)
+++.+.|++.|++|+..-...-++-++..++......+-++-++.
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~~~~~~~~Ktlv~ 46 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPVFTVEEADEVLGELPGAHTKNLFL 46 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCcCCHHHHHHhhccCCCceEEEEEE
Confidence 467889999999998755444555566666554444444554443
No 499
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=34.34 E-value=2.1e+02 Score=22.52 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhC-----CCeEEEEEccCCCchHHHHHHHHhhhc-CCeEEEEecCcCC--chhHHhhhccCCcEEEe
Q 032570 8 PVMNDAARTLSDFG-----VPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEA--HLSGVAAANSQILVIRV 78 (138)
Q Consensus 8 ~~~~~~~~~L~~~g-----i~~~~~V~SaHR~p~~~~~~~~~~~~~-~~~viIa~AG~~a--~L~gvva~~t~~PVIgv 78 (138)
+..+-+...++++| .++++.+.--...|+...+.+++..++ ++++||....-+. .+...+ .....|+|.+
T Consensus 18 ~~~~g~~~a~~~~~~~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~-~~~~ip~v~~ 95 (333)
T cd06332 18 DIRDGFELALKQLGGKLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVGPVFSNVALAVVPSL-TESGTFLISP 95 (333)
T ss_pred HHHHHHHHHHHHhCCCcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEcCCccHHHHHHHHHH-hhcCCeEEec
Confidence 44555566666664 457888877777898888888777554 7888886432222 223333 3457788875
No 500
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=34.15 E-value=2.1e+02 Score=23.88 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHhCC-CeEEEEEcc-CCCchHHHHHHHHhhhcCCeEE
Q 032570 5 LDLPVMNDAARTLSDFGV-PYEIKILPP-HQNCKEALSYALSAKERGIKII 53 (138)
Q Consensus 5 SD~~~~~~~~~~L~~~gi-~~~~~V~Sa-HR~p~~~~~~~~~~~~~~~~vi 53 (138)
.+++.+.+..+.+.+.|+ +..+...-. ..+.+++.++++.+.+.++++.
T Consensus 137 g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 137 GRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEE
Confidence 456777777788888998 777764433 3578899999998888888764
Done!