RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032570
(138 letters)
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 1.77A {Thermotoga maritima}
SCOP: c.23.8.1
Length = 183
Score = 130 bits (330), Expect = 7e-40
Identities = 59/139 (42%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M SD DLPVM AA L +FG+ YEI I+ H+ YA +A+ERGI++II G G
Sbjct: 20 MGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGA 79
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNAALYAVK 119
AHL G+ A+ + + VI VP+ + + D + SI +MP V VA+V NNAKNA + A
Sbjct: 80 AHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAAS 139
Query: 120 VLGIADEDLLERIRKYVEE 138
+LGI ++ ++++Y E
Sbjct: 140 ILGIKYPEIARKVKEYKER 158
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta
protein, structural genomics, PSI-2, protein initiative;
1.70A {Mycobacterium tuberculosis}
Length = 174
Score = 128 bits (325), Expect = 3e-39
Identities = 56/139 (40%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M SD D PVM DAA L++F +P E++++ H+ + SYA A RG+++II G G
Sbjct: 14 MGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGA 73
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNAALYAVK 119
AHL G+ AA + + VI VP+ D + SI +MP+ V VA+V A NA L AV+
Sbjct: 74 AHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVR 133
Query: 120 VLGIADEDLLERIRKYVEE 138
+LG A+ L RI + +
Sbjct: 134 MLGAANPQLRARIVAFQDR 152
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine
biosynthesis, lyase; 1.74A {Treponema denticola} PDB:
3rgg_A*
Length = 159
Score = 124 bits (314), Expect = 1e-37
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGV 59
M S D+ A L FG+ Y I+I H+ + +S + K+ I G
Sbjct: 9 MGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGR 68
Query: 60 EAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVK 119
LSG + I P S+ ++ D+ +S+RMPS + A V KNAAL A +
Sbjct: 69 SNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKNAALLAAR 126
Query: 120 VLGIADEDLLERIRKYVEE 138
+ + D+++ + ++ Y+E
Sbjct: 127 IFSLYDKEIADSVKSYMES 145
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase
subunit; purines, pyrimidines, nucleosides, nucleotides,
lyase; 2.20A {Coxiella burnetii}
Length = 169
Score = 118 bits (297), Expect = 5e-35
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M SD DL M A L G+P+E IL H+ KE + + +A RG + I G+
Sbjct: 13 MGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLA 72
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN--AKNAALYA 117
AHL+G AA++ VI VP+ D + S +MP V VA AKNAA+ A
Sbjct: 73 AHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGKAGAKNAAILA 132
Query: 118 VKVLGIADEDLLERIRKYVEE 138
+++ + D+ + +++ +
Sbjct: 133 AQIIALQDKSIAQKLVQQRTA 153
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase,
isomerase,biosynthetic protein; 1.45A {Staphylococcus
aureus subsp}
Length = 163
Score = 116 bits (294), Expect = 1e-34
Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M S D +M ++ L F +PYE +++ H+ K + +A A+ERGI III G G
Sbjct: 10 MGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGA 69
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RNNAKNAALYA 117
AHL G+ A+ + + VI VP+ ++ D + SI +MP + VA+ AKNA + A
Sbjct: 70 AHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILA 129
Query: 118 VKVLGIADEDLLERIRKY 135
++L I + L+E++ +Y
Sbjct: 130 ARMLSIQNPSLVEKLNQY 147
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold,
structural genomics, NPPSFA; 2.31A {Methanocaldococcus
jannaschii}
Length = 157
Score = 116 bits (293), Expect = 2e-34
Identities = 40/138 (28%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M S+ DL + A L +FGV +E+++ H+ + ++K + I G+
Sbjct: 6 MGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIAIAGLA 62
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKV 120
AHL GV A+ + VI VP+ ++ D +++S++MP + VA+V + +NAA+ A+++
Sbjct: 63 AHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILALEI 122
Query: 121 LGIADEDLLERIRKYVEE 138
L + DE++ +++ +Y E+
Sbjct: 123 LALKDENIAKKLIEYREK 140
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine
biosynthesis, spine, lyase; 1.80A {Bacillus anthracis}
SCOP: c.23.8.1
Length = 170
Score = 115 bits (291), Expect = 5e-34
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M S D M A L + +PYE K++ H+ YA +A+ERG+K+II G G
Sbjct: 18 MGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGA 77
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN--AKNAALYA 117
AHL G+ AA + + VI VP+ S+ + D + SI +MP V VA+V + NA L A
Sbjct: 78 AHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLA 137
Query: 118 VKVLGIADEDLLERIRKY 135
++LG +D+ + +
Sbjct: 138 AQILGSFHDDIHDALELR 155
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A
{Bacillus anthracis}
Length = 181
Score = 115 bits (291), Expect = 6e-34
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M S D M A L + +PYE K++ H+ YA +A+ERG+K+II G G
Sbjct: 29 MGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGA 88
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN--AKNAALYA 117
AHL G+ AA + + VI VP+ S+ + D + SI +MP V VA+V + NA L A
Sbjct: 89 AHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLA 148
Query: 118 VKVLGIADEDLLERIRKY 135
++LG +D+ + +
Sbjct: 149 AQILGSFHDDIHDALELR 166
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: MSE; 1.75A {Francisella tularensis
subsp} PDB: 3opq_A*
Length = 166
Score = 113 bits (286), Expect = 2e-33
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M S D M + L + G+ YE +++ H+ + YA +AKERG+K+II G G
Sbjct: 12 MGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGA 71
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RNNAKNAALYA 117
AHL G+ AA + + V+ VP+ S + D + SI +MP+ + VA+ AKNAAL+A
Sbjct: 72 AHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFA 131
Query: 118 VKVLGIADEDLLERIRKY 135
+L D ++ + + ++
Sbjct: 132 ASILQHTDINIAKALAEF 149
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle,
protein stability, lyase; HET: CIT; 1.55A {Acetobacter
aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A
2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Length = 182
Score = 113 bits (284), Expect = 6e-33
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M S D M A L++ +P+E I+ H+ YA +A ERG+ +II G G
Sbjct: 28 MGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGA 87
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RNNAKNAALYA 117
AHL G+ AA +++ V+ VP+ S D + SI +MP V V ++ + AKNAAL A
Sbjct: 88 AHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLA 147
Query: 118 VKVLGIADEDLLERIRKY 135
+L + + L R+ +
Sbjct: 148 ASILALYNPALAARLETW 165
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
2.80A {Homo sapiens}
Length = 425
Score = 118 bits (297), Expect = 7e-33
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI-KIIIVGDGV 59
M S DL + +FG+P E+++ H+ E L + GI + + G
Sbjct: 272 MGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGR 331
Query: 60 EAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVK 119
L V + N+ VI P L+ DW DV +S+R+PS + ++V + + +A +A +
Sbjct: 332 SNGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTV--LSPEGSAQFAAQ 389
Query: 120 VLGIADEDLLERIRKYVEE 138
+ G+++ + ++R +
Sbjct: 390 IFGLSNHLVWSKLRASILN 408
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer
(ABA) sandwich, rossmann fold, csgid, lyase, structu
genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A
2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Length = 174
Score = 112 bits (282), Expect = 1e-32
Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M S D M AA L+ VP+ ++++ H+ S+A A+ G+ +II G+G
Sbjct: 19 MGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGA 78
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RNNAKNAALYA 117
AHL G+ AA + + V+ VP+ S S D + SI +MP + V ++ + A NAAL A
Sbjct: 79 AHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLA 138
Query: 118 VKVLGIADEDLLERIRKY 135
++L + D +L R+ +
Sbjct: 139 AQILALHDTELAGRLAHW 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.004
Identities = 17/129 (13%), Positives = 43/129 (33%), Gaps = 21/129 (16%)
Query: 11 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA- 69
N +R+ + I + + L L +K ++++ V+ + A
Sbjct: 212 NWTSRSDHSSNIKLRIHSI------QAELRRLLKSKPYENCLLVL-LNVQN--AKAWNAF 262
Query: 70 --NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPR--NNAKNAALYAVKVLGIAD 125
+ +IL+ + D +++ +H+ + + +L K L
Sbjct: 263 NLSCKILLT-----TRFKQVTDFLSAATT-THISLDHHSMTLTPDEVKSLLL-KYLDCRP 315
Query: 126 EDLLERIRK 134
+DL +
Sbjct: 316 QDLPREVLT 324
Score = 28.3 bits (62), Expect = 0.95
Identities = 18/140 (12%), Positives = 40/140 (28%), Gaps = 49/140 (35%)
Query: 22 VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 81
Y + L P+ ++AL + R K +++ GV + + + V L
Sbjct: 127 AKYNVSRLQPYLKLRQALL-----ELRPAKNVLI------D--GVLGSGKTWVALDV-CL 172
Query: 82 SED----------W-------SEDDVINSIR------MPSHVQVASVPRNNAKNAALYAV 118
S W S + V+ ++ P+ + N
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI----- 227
Query: 119 KVLGIADEDLLERIRKYVEE 138
+ +R+ ++
Sbjct: 228 -------HSIQAELRRLLKS 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.007
Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 27/114 (23%)
Query: 41 YALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE--DDVINSIRM-- 96
Y ++AK G G+ + ++L G + ++ ++ W V +I +
Sbjct: 249 YVVTAKLLGFT---PGE-LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 97 ----------------PSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRK 134
PS ++ S+ N + + ++ + E + + + K
Sbjct: 305 FIGVRCYEAYPNTSLPPSILE-DSLENNEGVPSPMLSIS--NLTQEQVQDYVNK 355
Score = 29.6 bits (66), Expect = 0.32
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 25/80 (31%)
Query: 3 SDLDLPVMN--DAA--RTLSDFGVP---YEIKILPPH--QNCKEALSYAL---------- 43
D+ +PV + D + R LS I LP + ++ L
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 44 -----SAKE-RGIKIIIVGD 57
K+ G+++I+ G
Sbjct: 513 GVLTHRNKDGTGVRVIVAGT 532
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 28.3 bits (63), Expect = 0.86
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 110 AKNAALYAVKVLG 122
AK A++ +++VL
Sbjct: 90 AKGASMRSLRVLN 102
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 27.9 bits (63), Expect = 0.94
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 110 AKNAALYAVKVLG 122
AK L+ VKVL
Sbjct: 85 AKKTQLFGVKVLD 97
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 28.0 bits (62), Expect = 1.1
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 110 AKNAALYAVKVLG 122
AK A++ +++VL
Sbjct: 242 AKGASMRSLRVLN 254
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle-
degrading protease, nematodes, hydrolase, secreted,
zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A
Length = 279
Score = 27.9 bits (63), Expect = 1.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 110 AKNAALYAVKVLG 122
AK +++ VKVL
Sbjct: 86 AKKVSIFGVKVLD 98
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 27.6 bits (62), Expect = 1.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 110 AKNAALYAVKVLG 122
AKN + V+VL
Sbjct: 86 AKNVNIVGVRVLS 98
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 27.5 bits (62), Expect = 1.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 110 AKNAALYAVKVLG 122
AKN + V+VL
Sbjct: 88 AKNVNVVGVRVLN 100
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding,
inhibitor, hydrolase-hydro inhibitor complex; HET: PMS;
1.95A {Thermus aquaticus}
Length = 276
Score = 27.2 bits (61), Expect = 1.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 110 AKNAALYAVKVLG 122
AK LYAV+VL
Sbjct: 86 AKAVNLYAVRVLD 98
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 26.7 bits (59), Expect = 2.7
Identities = 5/15 (33%), Positives = 7/15 (46%), Gaps = 2/15 (13%)
Query: 45 AKERGIKIIIVGDGV 59
R IKI++ D
Sbjct: 321 LHSRKIKIVL--DIT 333
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like
protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP:
c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Length = 310
Score = 26.5 bits (59), Expect = 3.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 110 AKNAALYAVKVLG 122
A +A L+A KVL
Sbjct: 94 APDADLWAYKVLL 106
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic
amino acid biosynthesis, open form, form B, domain
movement, cyclase; HET: NAD; 2.20A {Staphylococcus
aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Length = 354
Score = 26.4 bits (59), Expect = 3.6
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 15 RTLSDFGVPYEIKILPPHQNCK------EALSYALSAK-ERGIKIIIVGDGVEAHLSGVA 67
LS V I+P + K E L Y LS R II VG G +G
Sbjct: 52 DILSYENV--HKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFV 109
Query: 68 AANSQ--ILVIRVP--LLSEDWS 86
AA + I+VP +L+ D S
Sbjct: 110 AATLLRGVHFIQVPTTILAHDSS 132
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 26.2 bits (58), Expect = 4.9
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 45 AKERGIKIIIVGDGV 59
A +R IK+++ DGV
Sbjct: 112 AHQRNIKVVL--DGV 124
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 25.5 bits (56), Expect = 5.2
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 45 AKERGIKIIIVGDG 58
+ IK ++VGDG
Sbjct: 1 GSPQAIKCVVVGDG 14
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 25.9 bits (57), Expect = 5.9
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 45 AKERGIKIIIVGDGVEAHLS 64
AK++ I++I+ D +
Sbjct: 91 AKKKSIRVIL--DLTPNYRG 108
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 25.7 bits (57), Expect = 6.5
Identities = 6/15 (40%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 45 AKERGIKIIIVGDGV 59
A G+++I+ DGV
Sbjct: 106 AHAHGVRVIL--DGV 118
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 25.7 bits (57), Expect = 6.6
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 110 AKNAALYAVKVLG 122
A A L+ +K L
Sbjct: 107 APKADLFIIKALS 119
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 25.5 bits (56), Expect = 6.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 45 AKERGIKIIIVGDG 58
A+ RG+K ++VGDG
Sbjct: 16 AEGRGVKCVLVGDG 29
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 25.8 bits (57), Expect = 6.8
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 45 AKERGIKIIIVGDGVEAHLS 64
ERGI++++ D V H
Sbjct: 228 CHERGIRVLL--DAVFNHSG 245
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 25.6 bits (56), Expect = 7.0
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 110 AKNAALYAVKVLG 122
A A L +KVL
Sbjct: 203 APGAKLVGIKVLN 215
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation,
cofilin-like, cytoskeleton, actin-binding, protein
tyrosine kinase-9; 1.70A {Homo sapiens}
Length = 134
Score = 24.9 bits (54), Expect = 7.1
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 32 HQNCKEALSYALSAKERGIKIIIVGDG--VEAHLSGVAAANSQILVIRVPLLSEDW 85
+ KE + A + R IK++I + + A V + +PLL
Sbjct: 7 TEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQQ 62
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 25.4 bits (56), Expect = 7.3
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 45 AKERGIKIIIVGDGVEAHLS 64
E+GI++++ D V H
Sbjct: 232 CHEKGIRVML--DAVFNHCG 249
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 25.4 bits (56), Expect = 7.6
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 45 AKERGIKIIIVGDGVEAHLS 64
A RGIKII+ D V H
Sbjct: 229 AHRRGIKIIL--DAVFNHAG 246
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene
regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP:
c.22.1.1
Length = 225
Score = 25.1 bits (55), Expect = 8.8
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 36 KEALSYALSAKERGIKIIIVGD-GVEAH--------LSGVAAANSQILVIRVPLLSEDWS 86
K AL ALS K R K++++ D +E L + ++ + L++ L ++
Sbjct: 106 KLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIV---LPWKEEG 162
Query: 87 EDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLL 129
+V S R V+V N AV++ G+ D+L
Sbjct: 163 YMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDML 205
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 25.0 bits (55), Expect = 9.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 45 AKERGIKIIIVGDG 58
+ R IK + VGDG
Sbjct: 4 SASRFIKCVTVGDG 17
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, TIM
barrel; 1.80A {Brucella melitensis biovar abortus}
Length = 269
Score = 25.2 bits (55), Expect = 9.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 87 EDDVINSIR----MPSHVQVASVP-RN 108
+ D+ I SHVQ+ASVP R+
Sbjct: 193 DGDLTRLIEKMNGAFSHVQIASVPDRH 219
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics,
PSI, structure initiative; 1.63A {Escherichia coli}
SCOP: c.1.15.5
Length = 260
Score = 25.3 bits (55), Expect = 9.2
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Query: 87 EDDVINSIR----MPSHVQVASVP-RN 108
+ ++ + IR +HVQ+A +P R+
Sbjct: 186 DGNLTHLIRDYAGKYAHVQIAGLPDRH 212
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.371
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,222,225
Number of extensions: 131302
Number of successful extensions: 711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 82
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)