RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032570
(138 letters)
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Length = 163
Score = 106 bits (265), Expect = 1e-30
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 3/141 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M S D M AA VP+ ++++ H+ + S+A SA+E G ++II G G
Sbjct: 8 MGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGA 67
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDD---VINSIRMPSHVQVASVPRNNAKNAALYA 117
AHL G+ AA + + V+ VP+ S S D I + V ++ + A NAAL A
Sbjct: 68 AHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLA 127
Query: 118 VKVLGIADEDLLERIRKYVEE 138
++L D++L +R+ + +
Sbjct: 128 AQILATHDKELHQRLNDWRKA 148
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 104 bits (260), Expect = 7e-30
Identities = 57/139 (41%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M SD DLPVM AA L +FG+ YEI I+ H+ YA +A+ERGI++II G G
Sbjct: 7 MGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGA 66
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNAKNAALYAVK 119
AHL G+ A+ + + VI VP+ + + D + + ++MP V VA+V NNAKNA + A
Sbjct: 67 AHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAAS 126
Query: 120 VLGIADEDLLERIRKYVEE 138
+LGI ++ ++++Y E
Sbjct: 127 ILGIKYPEIARKVKEYKER 145
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Length = 155
Score = 97.6 bits (243), Expect = 2e-27
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 3/141 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M S D M A L + +PYE K++ H+ YA +A+ERG+K+II G G
Sbjct: 8 MGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGA 67
Query: 61 AHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRM---PSHVQVASVPRNNAKNAALYA 117
AHL G+ AA + + VI VP+ S+ + D + SI V ++ + + NA L A
Sbjct: 68 AHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLA 127
Query: 118 VKVLGIADEDLLERIRKYVEE 138
++LG +D+ + + E
Sbjct: 128 AQILGSFHDDIHDALELRREA 148
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Length = 159
Score = 93.5 bits (232), Expect = 6e-26
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 3/141 (2%)
Query: 1 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 60
M S D M A L++ +P+E I+ H+ YA +A ERG+ +II G G
Sbjct: 9 MGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGA 68
Query: 61 AHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMP--SHVQVASVPRNNAKNAALYA 117
AHL G+ AA +++ V+ VP+ D +++ ++MP V ++ + AKNAAL A
Sbjct: 69 AHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLA 128
Query: 118 VKVLGIADEDLLERIRKYVEE 138
+L + + L R+ +
Sbjct: 129 ASILALYNPALAARLETWRAL 149
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide
synthetase MurE {Escherichia coli [TaxId: 562]}
Length = 234
Score = 27.5 bits (59), Expect = 0.52
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 99 HVQVASVPRNNAKN--AALYAVKVLGIADEDLLERIRKY 135
++ + N N AL + LG DLL+ +
Sbjct: 194 EIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARL 232
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 27.4 bits (59), Expect = 0.56
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 107 RNNAKN--AALYAVKVLGIADEDLLERIRKY 135
+N N A + LG +LE + ++
Sbjct: 176 FHNVLNALAVIALFDSLGYDLAPVLEALEEF 206
>d2jfga3 c.72.2.1 (A:94-297)
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 27.4 bits (59), Expect = 0.56
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 107 RNNAKN--AALYAVKVLGIADEDLLERIRKY 135
++N N AAL G+ L+ + +
Sbjct: 173 QHNYTNALAALALADAAGLPRASSLKALTTF 203
>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus,
different strains [TaxId: 11520]}
Length = 390
Score = 26.7 bits (59), Expect = 0.88
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 59 VEAHLSGVAAANSQILVIRVPLLSEDWSE 87
+ H G A NS L+IR P ++ E
Sbjct: 22 ISPHRFGEARGNSAPLIIREPFIACGPKE 50
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 214
Score = 26.6 bits (57), Expect = 1.1
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 107 RNNAKN--AALYAVKVLGIADEDLLERIRKY 135
R+N N AA +G + + +
Sbjct: 182 RHNIANALAAAALSMSVGATLDAIKAGLANL 212
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase
MurC {Haemophilus influenzae [TaxId: 727]}
Length = 215
Score = 26.3 bits (57), Expect = 1.3
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 84 DWSEDDVINSIRMPSHVQVASVPRNNAKN--AALYAVKVLGIADEDLLERIRKY 135
VI +V + ++NA N AAL K GIA+E +LE + +
Sbjct: 161 FQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADF 214
>d1ta3a_ c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I {Wheat
(Triticum aestivum) [TaxId: 4565]}
Length = 274
Score = 25.5 bits (55), Expect = 2.2
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 17 LSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII--IVGDGVEAHLSGVAAANS 71
L FG + + + + + +G+ + I G G L +A
Sbjct: 38 LDVFGANGKYHLDLSGHDLSSVGADIKHCQSKGVPVSLSIGGYGTGYSLPSNRSALD 94
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Length = 269
Score = 25.7 bits (55), Expect = 2.4
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 41 YALSAKERGIKIIIVGDGVEAH--LSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPS 98
+ G+K+ ++ G+ H L+ A+ VP E ++D + +
Sbjct: 17 HNRGLTGSGVKVAVLDTGISTHPDLNIRGGAS------FVP--GEPSTQDGNGHGTHVAG 68
Query: 99 HVQVAS---VPRNNAKNAALYAVKVLGIADEDLLERIRKYVE 137
+ + A +A LYAVKVLG + + I + +E
Sbjct: 69 TIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLE 110
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 25.5 bits (54), Expect = 2.8
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 38 ALSYALSAKERGIKIIIV 55
L A++ +++G+ I++
Sbjct: 17 GLRAAVATQQKGLSTIVL 34
>d3c9fa1 d.114.1.1 (A:338-561) 5'-nucleotidase (syn. UDP-sugar
hydrolase), C-terminal domain {Candida albicans [TaxId:
5476]}
Length = 224
Score = 24.9 bits (54), Expect = 4.1
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 76 IRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDL 128
IR L ++ D + +VP++ A A I+ L
Sbjct: 53 IRYDLYKGPYTIDSKFIVSPFENIWVNITVPKSVATKVAAKLNDADYISASRL 105
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 24.9 bits (53), Expect = 4.6
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 39 LSYALSAKERGIKIIIV 55
+ +L+AK+ G +I+V
Sbjct: 32 FNASLAAKKAGANVILV 48
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 24.6 bits (52), Expect = 5.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 39 LSYALSAKERGIKIIIV 55
S A+SA + G K+I++
Sbjct: 29 FSAAISATDSGAKVILI 45
>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas
campestris pv. campestris [TaxId: 340]}
Length = 252
Score = 24.5 bits (52), Expect = 5.4
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 121 LGIADEDLLERIRKYVEE 138
LG +DE L+ ++ V +
Sbjct: 12 LGYSDEKLVRLAKEAVAD 29
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 24.6 bits (52), Expect = 5.7
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 39 LSYALSAKERGIKIIIV 55
L+ A+SA++ G K+I++
Sbjct: 36 LAAAVSARDAGAKVILL 52
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis
glycosyltransferase MurG {Escherichia coli [TaxId:
562]}
Length = 351
Score = 23.9 bits (50), Expect = 9.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 38 ALSYALSAKERGIKIIIVG--DGVEAHLSGVAAANSQILVIRVPLLS 82
L+ A +G ++ +G D +EA L V +I IR+ L
Sbjct: 17 GLAVAHHLMAQGWQVRWLGTADRMEADL--VPKHGIEIDFIRISGLR 61
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 202
Score = 23.6 bits (51), Expect = 9.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 119 KVLGIADEDLLERIRKY 135
LG+ D L E I+KY
Sbjct: 45 TELGLEDLSLAEAIKKY 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.371
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 516,945
Number of extensions: 22524
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 28
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.6 bits)