BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032573
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0U|A Chain A, Crystal Structure Of Tm1821, The 8-Oxoguanine Dna
Glycosylase Of Thermotoga Maritima
pdb|3N0U|B Chain B, Crystal Structure Of Tm1821, The 8-Oxoguanine Dna
Glycosylase Of Thermotoga Maritima
pdb|3N0U|C Chain C, Crystal Structure Of Tm1821, The 8-Oxoguanine Dna
Glycosylase Of Thermotoga Maritima
Length = 219
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 110 GENGNDRCRWCHYMSCVPTSSWNCEGNV 137
GE G + +C CV T++W+ EG +
Sbjct: 42 GEEGTEEDLFCELSFCVLTANWSAEGGI 69
>pdb|1AUV|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
pdb|1AUV|B Chain B, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
Length = 311
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 73 GSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTS 129
GSA ++ + +Y LW+ + + GL + V G++G D H + V +S
Sbjct: 231 GSAXLEQIAXSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRD-----HIIEVVGSS 282
>pdb|2P0A|A Chain A, The Crystal Structure Of Human Synapsin Iii (Syn3) In
Complex With Amppnp
pdb|2P0A|B Chain B, The Crystal Structure Of Human Synapsin Iii (Syn3) In
Complex With Amppnp
Length = 344
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 73 GSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGND 115
GSA ++ T +Y LW+ S + GL + V ++G D
Sbjct: 246 GSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGRD 288
>pdb|1PK8|A Chain A, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|B Chain B, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|C Chain C, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|D Chain D, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|E Chain E, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|F Chain F, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|G Chain G, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|H Chain H, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PX2|A Chain A, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp (Form 1)
pdb|1PX2|B Chain B, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp (Form 1)
Length = 422
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 73 GSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGND 115
GSA ++ + +Y LW+ + + GL + V G++G D
Sbjct: 341 GSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRD 383
>pdb|1I7L|A Chain A, Crystal Structure Analysis Of The Complex Of The C Domain
Of Synapsin Ii From Rat With Atp
pdb|1I7L|B Chain B, Crystal Structure Analysis Of The Complex Of The C Domain
Of Synapsin Ii From Rat With Atp
pdb|1I7N|A Chain A, Crystal Structure Analysis Of The C Domain Of Synapsin Ii
From Rat Brain
pdb|1I7N|B Chain B, Crystal Structure Analysis Of The C Domain Of Synapsin Ii
From Rat Brain
Length = 309
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 73 GSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGND 115
GSA ++ + +Y LW+ + + GL + V G++G D
Sbjct: 229 GSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKDGKD 271
>pdb|1AUX|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
With Calcium Atp-Gamma-S Bound
pdb|1AUX|B Chain B, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
With Calcium Atp-Gamma-S Bound
Length = 311
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 73 GSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGND 115
GSA ++ + +Y LW+ + + GL + V G++G D
Sbjct: 231 GSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRD 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.475
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,364,044
Number of Sequences: 62578
Number of extensions: 95842
Number of successful extensions: 132
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 6
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)