Query 032573
Match_columns 137
No_of_seqs 179 out of 767
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:12:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2290 Rhomboid family protei 99.9 1.4E-24 3E-29 188.1 9.5 117 2-136 529-645 (652)
2 KOG2289 Rhomboid family protei 99.8 1.1E-20 2.3E-25 157.9 5.0 121 1-127 196-316 (316)
3 PTZ00101 rhomboid-1 protease; 99.0 2.8E-09 6.1E-14 88.1 10.0 57 2-58 180-239 (278)
4 PRK10907 intramembrane serine 97.4 0.00027 5.8E-09 58.5 5.6 37 21-57 228-268 (276)
5 PF01694 Rhomboid: Rhomboid fa 97.0 4.3E-05 9.4E-10 55.2 -3.1 37 25-61 108-144 (145)
6 COG0705 Membrane associated se 96.4 0.0075 1.6E-07 47.3 5.3 38 22-59 171-211 (228)
7 COG1284 Uncharacterized conser 61.1 80 0.0017 26.4 8.7 58 5-62 72-137 (289)
8 KOG2632 Rhomboid family protei 60.8 18 0.00039 30.1 4.7 22 35-56 174-195 (258)
9 PF12669 P12: Virus attachment 58.1 22 0.00048 22.7 3.9 19 116-135 29-48 (58)
10 PRK12579 putative monovalent c 55.5 29 0.00063 28.7 5.1 30 37-66 129-162 (258)
11 PF13829 DUF4191: Domain of un 51.9 41 0.0009 27.4 5.4 43 17-59 30-72 (224)
12 PF13706 PepSY_TM_3: PepSY-ass 51.5 41 0.00089 19.3 4.0 28 81-108 5-32 (37)
13 PRK12505 putative monovalent c 50.7 32 0.0007 26.5 4.4 21 45-65 47-68 (159)
14 PF06946 Phage_holin_5: Phage 45.7 78 0.0017 22.4 5.3 56 2-57 21-78 (93)
15 PRK04949 putative sulfate tran 45.7 86 0.0019 25.5 6.4 42 17-58 139-182 (251)
16 PF12036 DUF3522: Protein of u 45.5 1.4E+02 0.0031 23.1 9.4 25 85-109 148-172 (186)
17 COG4512 AgrB Membrane protein 42.9 1.3E+02 0.0028 24.0 6.7 22 38-59 104-125 (198)
18 PRK08386 putative monovalent c 41.4 35 0.00076 25.9 3.3 20 45-64 35-55 (151)
19 PRK12508 putative monovalent c 40.5 36 0.00077 25.5 3.2 20 45-64 35-55 (139)
20 PRK12768 CysZ-like protein; Re 40.0 35 0.00077 27.7 3.3 30 27-58 139-168 (240)
21 PRK06281 putative monovalent c 39.2 87 0.0019 23.9 5.2 21 45-65 33-54 (154)
22 PRK08387 putative monovalent c 39.2 37 0.00079 25.2 3.0 20 45-64 33-53 (131)
23 TIGR03007 pepcterm_ChnLen poly 38.3 79 0.0017 27.5 5.4 15 86-100 476-490 (498)
24 PF02038 ATP1G1_PLM_MAT8: ATP1 36.8 68 0.0015 20.3 3.5 24 86-109 12-35 (50)
25 PF01790 LGT: Prolipoprotein d 36.7 2.1E+02 0.0045 23.0 7.3 17 42-58 89-105 (256)
26 PF02674 Colicin_V: Colicin V 36.6 1.4E+02 0.0031 21.1 5.8 23 36-58 91-113 (146)
27 PRK12574 putative monovalent c 36.5 38 0.00083 25.4 2.8 21 45-65 36-57 (141)
28 TIGR00943 2a6301s02 monovalent 35.6 39 0.00085 24.2 2.6 21 45-65 11-32 (107)
29 PRK12573 putative monovalent c 34.9 45 0.00098 25.0 3.0 21 45-65 36-57 (140)
30 KOG2980 Integral membrane prot 34.8 19 0.00041 30.7 1.0 25 36-60 278-302 (310)
31 PRK10478 putative PTS system f 34.7 40 0.00087 29.2 3.0 19 40-58 100-118 (359)
32 TIGR02302 aProt_lowcomp conser 34.2 1.8E+02 0.0039 28.1 7.4 35 30-65 35-71 (851)
33 PRK10255 PTS system N-acetyl g 33.8 2E+02 0.0043 26.9 7.5 41 16-57 71-112 (648)
34 PRK12437 prolipoprotein diacyl 33.7 1.9E+02 0.004 23.6 6.7 15 44-58 96-110 (269)
35 PF07895 DUF1673: Protein of u 32.3 1.1E+02 0.0025 24.0 5.0 12 45-56 83-94 (205)
36 COG2981 CysZ Uncharacterized p 31.2 3.1E+02 0.0066 22.8 7.4 28 13-40 133-160 (250)
37 PF13779 DUF4175: Domain of un 30.2 1.9E+02 0.0041 27.8 6.8 20 84-103 126-145 (820)
38 TIGR00544 lgt prolipoprotein d 30.1 2.2E+02 0.0048 23.4 6.6 15 44-58 102-116 (278)
39 PRK10263 DNA translocase FtsK; 29.7 1.8E+02 0.004 29.6 6.8 14 43-56 141-154 (1355)
40 PRK02983 lysS lysyl-tRNA synth 29.4 3.6E+02 0.0079 26.8 8.8 21 43-63 114-134 (1094)
41 PRK13108 prolipoprotein diacyl 28.7 2.1E+02 0.0046 25.6 6.5 15 44-58 104-118 (460)
42 PRK12509 putative monovalent c 28.6 66 0.0014 24.0 2.9 20 45-64 34-54 (137)
43 KOG1304 Amino acid transporter 27.7 2.1E+02 0.0045 25.7 6.3 23 35-57 381-403 (449)
44 COG1299 FruA Phosphotransferas 27.0 1E+02 0.0022 26.7 4.2 19 40-58 94-112 (343)
45 PF04039 MnhB: Domain related 26.2 86 0.0019 22.3 3.1 13 45-57 32-44 (124)
46 PF11992 DUF3488: Domain of un 26.0 3.8E+02 0.0083 22.2 9.1 47 14-60 97-145 (325)
47 PRK10845 colicin V production 24.8 3E+02 0.0064 20.7 6.0 23 36-58 91-113 (162)
48 COG3619 Predicted membrane pro 24.1 3.9E+02 0.0084 21.6 7.9 36 3-38 75-111 (226)
49 PRK12567 putative monovalent c 24.1 1.2E+02 0.0027 24.3 3.9 20 45-64 120-140 (218)
50 PF06645 SPC12: Microsomal sig 23.6 2.3E+02 0.005 18.8 5.4 40 23-65 18-58 (76)
51 PRK00052 prolipoprotein diacyl 23.5 3.5E+02 0.0076 22.0 6.6 15 44-58 102-116 (269)
52 COG4218 MtrF Tetrahydromethano 22.4 81 0.0018 21.4 2.1 19 40-58 47-65 (73)
53 PF06295 DUF1043: Protein of u 22.3 64 0.0014 23.5 1.8 16 44-59 3-18 (128)
54 PF04247 SirB: Invasion gene e 22.2 3.1E+02 0.0068 19.9 9.1 34 25-58 54-89 (123)
55 PF10966 DUF2768: Protein of u 22.1 46 0.00099 21.6 0.9 21 78-98 25-45 (58)
56 PRK12507 putative monovalent c 22.0 93 0.002 26.6 3.0 20 45-64 228-248 (332)
57 PTZ00206 amino acid transporte 21.8 2.6E+02 0.0057 24.4 5.8 34 24-57 384-418 (467)
58 PF06570 DUF1129: Protein of u 21.6 3.9E+02 0.0084 20.7 7.9 12 24-35 89-100 (206)
59 PRK11677 hypothetical protein; 20.8 1.2E+02 0.0025 22.7 3.0 19 89-107 3-21 (134)
60 PHA00736 hypothetical protein 20.6 2.2E+02 0.0047 19.2 3.9 22 33-54 53-74 (79)
61 PF03672 UPF0154: Uncharacteri 20.4 91 0.002 20.6 2.0 15 43-57 7-21 (64)
62 PF02632 BioY: BioY family; I 20.3 2.1E+02 0.0046 21.4 4.3 19 40-58 55-73 (148)
63 COG3859 Predicted membrane pro 20.1 2.5E+02 0.0055 22.2 4.8 25 15-39 6-30 (185)
No 1
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-24 Score=188.08 Aligned_cols=117 Identities=24% Similarity=0.572 Sum_probs=97.6
Q ss_pred HhHHHhhcccccchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCcCccCCCCCCCccchhcch
Q 032573 2 LSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKY 81 (137)
Q Consensus 2 l~dl~~~W~~~~~~~~~l~~l~~~i~i~l~~g~~p~idn~aHiGG~i~G~l~~~~~~~~~~~~~~~~~~~p~~~~~k~k~ 81 (137)
++||+++|+++++||+++..++..+.+..+ |++|+|||+|||.|+++|++++++++|+..||..|.+
T Consensus 529 ~vEl~qs~~il~~~w~a~~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~y------------ 595 (652)
T KOG2290|consen 529 FVELFQSWQILERPWRAFFHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDLY------------ 595 (652)
T ss_pred HHHHHhhhHhhhhHHHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHhhccccccchhhh------------
Confidence 689999999999999999998877766555 9999999999999999999999999999999875531
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccceeecCCCCCCCCC
Q 032573 82 KTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEGN 136 (137)
Q Consensus 82 k~~~~~l~ii~l~lli~~f~~~lv~~~~~~~~~~~C~wC~YlnCiP~~~w~C~~~ 136 (137)
+ ++.+.+++.+++..+++..+++|| ++ ..+|+||.|+||+|+++-+|+.+
T Consensus 596 r--Kr~~ilIs~ivf~~Lla~Lvv~fy-~~--~i~cpWce~ltClP~~~~~~e~~ 645 (652)
T KOG2290|consen 596 R--KRFYILISQIVFSGLLAILVVVFY-NY--PIDCPWCEHLTCLPFTDCFCEKY 645 (652)
T ss_pred h--hHHHHHHHHHHHHHHHHHHHHhee-ec--ccCCchhhhccccchhhhhhhhh
Confidence 0 135667777777777767666666 44 46899999999999999999864
No 2
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-20 Score=157.93 Aligned_cols=121 Identities=52% Similarity=0.858 Sum_probs=106.2
Q ss_pred CHhHHHhhcccccchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCcCccCCCCCCCccchhcc
Q 032573 1 MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSK 80 (137)
Q Consensus 1 ml~dl~~~W~~~~~~~~~l~~l~~~i~i~l~~g~~p~idn~aHiGG~i~G~l~~~~~~~~~~~~~~~~~~~p~~~~~k~k 80 (137)
|++|+++||++++++..++..+++++.+|+.+|++|++|||||+||+++|++.|+++.+.+++++......+ .+.+.|
T Consensus 196 ~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~--~~~~~~ 273 (316)
T KOG2289|consen 196 HLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIV--LRVFSK 273 (316)
T ss_pred HHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEEecccee--eecccc
Confidence 689999999999999999999999999999999999999999999999999999999999999987654433 233455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccceeec
Q 032573 81 YKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVP 127 (137)
Q Consensus 81 ~k~~~~~l~ii~l~lli~~f~~~lv~~~~~~~~~~~C~wC~YlnCiP 127 (137)
++.+|.+.|+..++.++.++.++++.+|.+ ++|.||+++.|+|
T Consensus 274 ~~~~q~~~w~~~~~~~v~~~~~~~~~if~~----~~~~~~~~~~~~~ 316 (316)
T KOG2289|consen 274 RLPYQLLLWIVLLVYLVAGLFASLFNIFDG----KYCLWCHPLSCVP 316 (316)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhcC----CccccccccCCCC
Confidence 667777888888888888888888888875 7999999999987
No 3
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.00 E-value=2.8e-09 Score=88.11 Aligned_cols=57 Identities=21% Similarity=0.506 Sum_probs=44.1
Q ss_pred HhHHHhhcccccchHHHHHHHHHHHHHHHHH--hh-ccchhhHHHHHHHHHHHHHHHhhc
Q 032573 2 LSELLTNWSLYTNKAAALITLLVIIAINLAI--GI-LPHVDNFAHIGGFLTGFFLGFVLL 58 (137)
Q Consensus 2 l~dl~~~W~~~~~~~~~l~~l~~~i~i~l~~--g~-~p~idn~aHiGG~i~G~l~~~~~~ 58 (137)
+++++.+|+..++|.+.+..++.++++.+.+ ++ .|+|||+||+||+++|+++|.++-
T Consensus 180 ~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~ 239 (278)
T PTZ00101 180 TSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYN 239 (278)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 5688999999888877666655555554443 33 389999999999999999998863
No 4
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=97.44 E-value=0.00027 Score=58.53 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhh----ccchhhHHHHHHHHHHHHHHHhh
Q 032573 21 TLLVIIAINLAIGI----LPHVDNFAHIGGFLTGFFLGFVL 57 (137)
Q Consensus 21 ~l~~~i~i~l~~g~----~p~idn~aHiGG~i~G~l~~~~~ 57 (137)
.++.+.++.+++|+ .++|||.||+||+++|+++|+..
T Consensus 228 ~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~ 268 (276)
T PRK10907 228 GLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWD 268 (276)
T ss_pred HHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHh
Confidence 45566666666555 27899999999999999999865
No 5
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=97.00 E-value=4.3e-05 Score=55.17 Aligned_cols=37 Identities=41% Similarity=1.015 Sum_probs=29.8
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCC
Q 032573 25 IIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRP 61 (137)
Q Consensus 25 ~i~i~l~~g~~p~idn~aHiGG~i~G~l~~~~~~~~~ 61 (137)
.+.+.+.+++.|.+|+.+|++|++.|++.+..+.++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~ 144 (145)
T PF01694_consen 108 VLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRP 144 (145)
T ss_dssp CCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3455666677899999999999999999999987654
No 6
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0075 Score=47.34 Aligned_cols=38 Identities=32% Similarity=0.518 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHHHHhhcc
Q 032573 22 LLVIIAINLAIGIL---PHVDNFAHIGGFLTGFFLGFVLLP 59 (137)
Q Consensus 22 l~~~i~i~l~~g~~---p~idn~aHiGG~i~G~l~~~~~~~ 59 (137)
+.+.++.+++.+.. |+|+++||+||+++|++.+..+.+
T Consensus 171 i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~ 211 (228)
T COG0705 171 ILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSR 211 (228)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555553 369999999999999999998743
No 7
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=61.10 E-value=80 Score=26.38 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=37.9
Q ss_pred HHhhcccccchHHHHHHHHHHHHHHHHHhhccc------hh--hHHHHHHHHHHHHHHHhhccCCC
Q 032573 5 LLTNWSLYTNKAAALITLLVIIAINLAIGILPH------VD--NFAHIGGFLTGFFLGFVLLPRPR 62 (137)
Q Consensus 5 l~~~W~~~~~~~~~l~~l~~~i~i~l~~g~~p~------id--n~aHiGG~i~G~l~~~~~~~~~~ 62 (137)
++..|+.+.++..-+..+......++.+-+.+. .| ..|=+||++.|+=+|+++-..-+
T Consensus 72 ~il~~k~iGk~ft~~tti~g~~~~s~~~~~~~~~~~~~~~~~ll~aifgG~l~G~G~glv~r~ggS 137 (289)
T COG1284 72 FILGYKKIGKRFTLLSTIIGVLLLSLFLWLFQRLPVLTIIDPLLAALFGGLLLGIGLGLVFRHGGS 137 (289)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 356777776654444445555666566655433 23 56889999999999999865443
No 8
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=60.83 E-value=18 Score=30.07 Aligned_cols=22 Identities=27% Similarity=0.696 Sum_probs=20.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHh
Q 032573 35 LPHVDNFAHIGGFLTGFFLGFV 56 (137)
Q Consensus 35 ~p~idn~aHiGG~i~G~l~~~~ 56 (137)
.|+.|-.+|++|++.|+..++-
T Consensus 174 vp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 174 VPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred ccCchHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999984
No 9
>PF12669 P12: Virus attachment protein p12 family
Probab=58.15 E-value=22 Score=22.72 Aligned_cols=19 Identities=37% Similarity=0.584 Sum_probs=10.3
Q ss_pred CCCccccce-eecCCCCCCCC
Q 032573 116 RCRWCHYMS-CVPTSSWNCEG 135 (137)
Q Consensus 116 ~C~wC~Yln-CiP~~~w~C~~ 135 (137)
.|..|.-=+ | +-+...|++
T Consensus 29 ~c~gCs~~sgC-~~~~~~C~~ 48 (58)
T PF12669_consen 29 CCCGCSGCSGC-CGSSSSCHS 48 (58)
T ss_pred CCCCCCCCCCc-CCCCCCCCC
Confidence 456665444 6 444555764
No 10
>PRK12579 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=55.48 E-value=29 Score=28.72 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=19.7
Q ss_pred chhhHHH---HHHHHHHHHHHHhh-ccCCCcCcc
Q 032573 37 HVDNFAH---IGGFLTGFFLGFVL-LPRPRYGWL 66 (137)
Q Consensus 37 ~idn~aH---iGG~i~G~l~~~~~-~~~~~~~~~ 66 (137)
++=..+| =|||.+|+++|..+ +.+..+|..
T Consensus 129 yl~l~GH~~PGGGF~gGlI~a~A~iL~~la~G~~ 162 (258)
T PRK12579 129 ITILGGHITPGGGFQGGALIAAAYILSIVAFGSK 162 (258)
T ss_pred HHHHhCCCCCCchHHHHHHHHHHHHHHHHHCCcc
Confidence 4444555 39999999988664 455555543
No 11
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=51.95 E-value=41 Score=27.36 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcc
Q 032573 17 AALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLP 59 (137)
Q Consensus 17 ~~l~~l~~~i~i~l~~g~~p~idn~aHiGG~i~G~l~~~~~~~ 59 (137)
..+...+..+++.+++|++-+-=++.-+-|+..|++.+++++-
T Consensus 30 ~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~ 72 (224)
T PF13829_consen 30 LMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLS 72 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556677777885444477788899999999988763
No 12
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=51.46 E-value=41 Score=19.35 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032573 81 YKTHQYVLWLVSLVLLIAGLTVALVMLF 108 (137)
Q Consensus 81 ~k~~~~~l~ii~l~lli~~f~~~lv~~~ 108 (137)
.+.++|.-.++++.++++.+..++.+|.
T Consensus 5 ~~~H~W~Gl~~g~~l~~~~~tG~~~~f~ 32 (37)
T PF13706_consen 5 RKLHRWLGLILGLLLFVIFLTGAVMVFR 32 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3567788888888888877776665553
No 13
>PRK12505 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=50.72 E-value=32 Score=26.46 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhh-ccCCCcCc
Q 032573 45 GGFLTGFFLGFVL-LPRPRYGW 65 (137)
Q Consensus 45 GG~i~G~l~~~~~-~~~~~~~~ 65 (137)
|||.+|.++|.++ +....++.
T Consensus 47 GGFqgGlI~Aaa~iL~~la~G~ 68 (159)
T PRK12505 47 GGFQGGVIVASVVLMLAFAFGI 68 (159)
T ss_pred chHHHHHHHHHHHHHHHHHCCc
Confidence 9999999987653 44444443
No 14
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=45.69 E-value=78 Score=22.44 Aligned_cols=56 Identities=23% Similarity=0.195 Sum_probs=32.1
Q ss_pred HhHHHhhcccccchHHHHHHHHHHHHHHHHHhhccchhhHHH--HHHHHHHHHHHHhh
Q 032573 2 LSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAH--IGGFLTGFFLGFVL 57 (137)
Q Consensus 2 l~dl~~~W~~~~~~~~~l~~l~~~i~i~l~~g~~p~idn~aH--iGG~i~G~l~~~~~ 57 (137)
+++++..=+.+++++-.+..+++-++++++...+|+=.+.+. .-|.++|+..+.++
T Consensus 21 lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~ 78 (93)
T PF06946_consen 21 LVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLF 78 (93)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHH
Confidence 345555555567777777777777777777666554111111 23556666665543
No 15
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=45.68 E-value=86 Score=25.54 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhccchhh-HHH-HHHHHHHHHHHHhhc
Q 032573 17 AALITLLVIIAINLAIGILPHVDN-FAH-IGGFLTGFFLGFVLL 58 (137)
Q Consensus 17 ~~l~~l~~~i~i~l~~g~~p~idn-~aH-iGG~i~G~l~~~~~~ 58 (137)
+.+...+..++..++++++|.+.+ .+= ++=.+.|.++|.=+.
T Consensus 139 ~kl~y~l~~~i~llll~fIP~vg~~~~pvl~~~~~awll~~ey~ 182 (251)
T PRK04949 139 QKLAYYLPRAIVLLLLSFIPVVGQTVAPVLWFLFSAWMMAIQYC 182 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHh
Confidence 333333444445556688999964 232 333445555555443
No 16
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=45.46 E-value=1.4e+02 Score=23.08 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 032573 85 QYVLWLVSLVLLIAGLTVALVMLFR 109 (137)
Q Consensus 85 ~~~l~ii~l~lli~~f~~~lv~~~~ 109 (137)
++..+...++..++.++.++..|..
T Consensus 148 ~~~~~~~~l~~g~~~~~~Gl~~f~e 172 (186)
T PF12036_consen 148 SWRRWLFYLLPGIIFFILGLDLFLE 172 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 3344455555555666777666443
No 17
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=42.94 E-value=1.3e+02 Score=24.01 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhcc
Q 032573 38 VDNFAHIGGFLTGFFLGFVLLP 59 (137)
Q Consensus 38 idn~aHiGG~i~G~l~~~~~~~ 59 (137)
.||++-++=++.|.+.=+.+.|
T Consensus 104 ~Nn~~vLa~~iiglL~i~~yAP 125 (198)
T COG4512 104 ANNYAVLAYFIIGLLLIFKYAP 125 (198)
T ss_pred cchHHHHHHHHHHHHHHHhcCc
Confidence 6899999999999998776654
No 18
>PRK08386 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=41.39 E-value=35 Score=25.86 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhh-ccCCCcC
Q 032573 45 GGFLTGFFLGFVL-LPRPRYG 64 (137)
Q Consensus 45 GG~i~G~l~~~~~-~~~~~~~ 64 (137)
|||.+|.++|..+ +.+..++
T Consensus 35 GGF~gG~i~a~a~iL~~la~g 55 (151)
T PRK08386 35 GGFQGGATIAGGGALFLVAFG 55 (151)
T ss_pred chHHHHHHHHHHHHHHHHHCC
Confidence 9999999987653 4444444
No 19
>PRK12508 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=40.45 E-value=36 Score=25.47 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhh-ccCCCcC
Q 032573 45 GGFLTGFFLGFVL-LPRPRYG 64 (137)
Q Consensus 45 GG~i~G~l~~~~~-~~~~~~~ 64 (137)
|||.+|.++|..+ +.+..++
T Consensus 35 GGFqgG~i~a~a~iL~~la~g 55 (139)
T PRK12508 35 GGFQAGVIVASAIILYSMLFG 55 (139)
T ss_pred chHHHHHHHHHHHHHHHHHCC
Confidence 9999999987653 4444444
No 20
>PRK12768 CysZ-like protein; Reviewed
Probab=40.01 E-value=35 Score=27.73 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=16.1
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 032573 27 AINLAIGILPHVDNFAHIGGFLTGFFLGFVLL 58 (137)
Q Consensus 27 ~i~l~~g~~p~idn~aHiGG~i~G~l~~~~~~ 58 (137)
++.+.+.++|.++ . =++=++.|.+++.-+.
T Consensus 139 ll~L~L~fIP~v~-~-vl~~l~~awLl~~ey~ 168 (240)
T PRK12768 139 LVALPLLFVPGIN-L-IAFFVINGYLLGREFF 168 (240)
T ss_pred HHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHH
Confidence 3445567789994 3 2444445555554443
No 21
>PRK06281 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=39.21 E-value=87 Score=23.89 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhh-ccCCCcCc
Q 032573 45 GGFLTGFFLGFVL-LPRPRYGW 65 (137)
Q Consensus 45 GG~i~G~l~~~~~-~~~~~~~~ 65 (137)
|||.+|.++|..+ +....++.
T Consensus 33 GGFqGGvi~asa~iL~~la~g~ 54 (154)
T PRK06281 33 GGFQGGAMIAAGFILCIVVYGL 54 (154)
T ss_pred ccHHHHHHHHHHHHHHHHHcCh
Confidence 9999999988664 44445553
No 22
>PRK08387 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=39.18 E-value=37 Score=25.19 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhh-ccCCCcC
Q 032573 45 GGFLTGFFLGFVL-LPRPRYG 64 (137)
Q Consensus 45 GG~i~G~l~~~~~-~~~~~~~ 64 (137)
|||.+|.+.|..+ +.+..++
T Consensus 33 GGF~gGli~a~a~~L~~la~g 53 (131)
T PRK08387 33 GGFQAGVILAVAVILLITSHG 53 (131)
T ss_pred chHHHHHHHHHHHHHHHHHcC
Confidence 9999999988764 4444555
No 23
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.27 E-value=79 Score=27.48 Aligned_cols=15 Identities=40% Similarity=0.344 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 032573 86 YVLWLVSLVLLIAGL 100 (137)
Q Consensus 86 ~~l~ii~l~lli~~f 100 (137)
.++|++++.+.+..+
T Consensus 476 ~~~~~~~~~~~~~~~ 490 (498)
T TIGR03007 476 LAAFLASAGLLIAVY 490 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777666555
No 24
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=36.77 E-value=68 Score=20.25 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 032573 86 YVLWLVSLVLLIAGLTVALVMLFR 109 (137)
Q Consensus 86 ~~l~ii~l~lli~~f~~~lv~~~~ 109 (137)
..+++.+++...++|++++++...
T Consensus 12 ~tLrigGLi~A~vlfi~Gi~iils 35 (50)
T PF02038_consen 12 ETLRIGGLIFAGVLFILGILIILS 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHhhccchHHHHHHHHHHHHHHHc
Confidence 358888888888899999887654
No 25
>PF01790 LGT: Prolipoprotein diacylglyceryl transferase; InterPro: IPR001640 Prolipoprotein diacylglyceryl transferase [] is the bacterial enzyme catalysing the first step in lipoprotein biogenesis. It transfers the n-acyl diglyceride group onto what will become the N-terminal cysteine of membrane lipoproteins. This enzyme is an integral membrane protein.; GO: 0016757 transferase activity, transferring glycosyl groups, 0009249 protein lipoylation, 0042158 lipoprotein biosynthetic process, 0016020 membrane
Probab=36.69 E-value=2.1e+02 Score=22.96 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhc
Q 032573 42 AHIGGFLTGFFLGFVLL 58 (137)
Q Consensus 42 aHiGG~i~G~l~~~~~~ 58 (137)
+--||+++|++.+....
T Consensus 89 ~~~GGligg~l~~~~~~ 105 (256)
T PF01790_consen 89 SFYGGLIGGILAGIWYA 105 (256)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788888888877764
No 26
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=36.64 E-value=1.4e+02 Score=21.09 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=16.4
Q ss_pred cchhhHHHHHHHHHHHHHHHhhc
Q 032573 36 PHVDNFAHIGGFLTGFFLGFVLL 58 (137)
Q Consensus 36 p~idn~aHiGG~i~G~l~~~~~~ 58 (137)
+.....-|++|.+.|++-+.++.
T Consensus 91 ~~~~~~dr~lG~~~G~~~~~li~ 113 (146)
T PF02674_consen 91 PFLGWLDRLLGALLGLAKGLLIL 113 (146)
T ss_pred ccccHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888877666543
No 27
>PRK12574 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=36.52 E-value=38 Score=25.40 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhh-ccCCCcCc
Q 032573 45 GGFLTGFFLGFVL-LPRPRYGW 65 (137)
Q Consensus 45 GG~i~G~l~~~~~-~~~~~~~~ 65 (137)
|||++|++.|..+ +++..+|.
T Consensus 36 GGF~gGli~a~a~iL~~la~G~ 57 (141)
T PRK12574 36 GGFIGGLIFSSAFILMFLAFGV 57 (141)
T ss_pred ccHHHHHHHHHHHHHHHHHcCH
Confidence 9999999988664 45555553
No 28
>TIGR00943 2a6301s02 monovalent cation:proton antiporter. This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter.This family is specific for the phaB and mnhB proteins.
Probab=35.57 E-value=39 Score=24.18 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhh-ccCCCcCc
Q 032573 45 GGFLTGFFLGFVL-LPRPRYGW 65 (137)
Q Consensus 45 GG~i~G~l~~~~~-~~~~~~~~ 65 (137)
|||++|++++..+ +++..++.
T Consensus 11 GGF~gGli~a~a~iL~~la~g~ 32 (107)
T TIGR00943 11 GGFVAGLLTASSLILITIAFGI 32 (107)
T ss_pred chHHHHHHHHHHHHHHHHHCCH
Confidence 8999999988664 44445543
No 29
>PRK12573 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=34.89 E-value=45 Score=24.99 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhh-ccCCCcCc
Q 032573 45 GGFLTGFFLGFVL-LPRPRYGW 65 (137)
Q Consensus 45 GG~i~G~l~~~~~-~~~~~~~~ 65 (137)
|||.+|.++|..+ +++..+|.
T Consensus 36 GGF~gGli~a~a~iL~~la~G~ 57 (140)
T PRK12573 36 GGFIGGLITASALVILLLAFDI 57 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHcCH
Confidence 9999999988664 44445543
No 30
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=34.82 E-value=19 Score=30.71 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.1
Q ss_pred cchhhHHHHHHHHHHHHHHHhhccC
Q 032573 36 PHVDNFAHIGGFLTGFFLGFVLLPR 60 (137)
Q Consensus 36 p~idn~aHiGG~i~G~l~~~~~~~~ 60 (137)
-+-|++||+||-++|...+..+.++
T Consensus 278 ~~~n~~Ah~~gsl~Gv~va~~~~~r 302 (310)
T KOG2980|consen 278 GFFNHAAHLSGSLFGVVVATYLWAR 302 (310)
T ss_pred ccchhHhhhcchHHHHHHHHHHHHH
Confidence 4578999999999999999887543
No 31
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=34.67 E-value=40 Score=29.19 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 032573 40 NFAHIGGFLTGFFLGFVLL 58 (137)
Q Consensus 40 n~aHiGG~i~G~l~~~~~~ 58 (137)
..+-+||.++|++.|++..
T Consensus 100 ~~GFlGaii~G~laGy~v~ 118 (359)
T PRK10478 100 GAGFFGALIAGIIGGIVVH 118 (359)
T ss_pred CcchHHHHHHHHHHHHHHH
Confidence 5677999999999998875
No 32
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=34.20 E-value=1.8e+02 Score=28.15 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=19.9
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHh--hccCCCcCc
Q 032573 30 LAIGILPHVDNFAHIGGFLTGFFLGFV--LLPRPRYGW 65 (137)
Q Consensus 30 l~~g~~p~idn~aHiGG~i~G~l~~~~--~~~~~~~~~ 65 (137)
..+|+...+..+.|+++++. |..+++ +.+...|.|
T Consensus 35 ~~~Gl~~~lp~~~~~~~l~~-~~~~~~~~l~~~~rfr~ 71 (851)
T TIGR02302 35 GWAGLFLALPFWLHIAGLVL-FAALALVALIPAIRFRW 71 (851)
T ss_pred HHHhHHHhhHHHHHHHHHHH-HHHHHHHHHhhhhhcCC
Confidence 34466566678889888876 433332 233335555
No 33
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=33.81 E-value=2e+02 Score=26.91 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhh
Q 032573 16 AAALITLLVIIAINLAIGIL-PHVDNFAHIGGFLTGFFLGFVL 57 (137)
Q Consensus 16 ~~~l~~l~~~i~i~l~~g~~-p~idn~aHiGG~i~G~l~~~~~ 57 (137)
..++.-++..++++.+...+ |.+ +.+-+||.+.|++.+++.
T Consensus 71 ~Aala~~v~yl~~~~~~~~~~~~~-~~gvfgGIi~G~i~a~l~ 112 (648)
T PRK10255 71 AAALAGAVGYFVLTKAMVTINPEI-NMGVLAGIITGLVGGAAY 112 (648)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhh-chhhhhhhHHHHHHHHHH
Confidence 34455555555555444333 333 566799999999999865
No 34
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=33.74 E-value=1.9e+02 Score=23.63 Aligned_cols=15 Identities=20% Similarity=0.612 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhc
Q 032573 44 IGGFLTGFFLGFVLL 58 (137)
Q Consensus 44 iGG~i~G~l~~~~~~ 58 (137)
-||+++|++.+..+.
T Consensus 96 ~GGligg~l~~~~~~ 110 (269)
T PRK12437 96 HGGLIGAVLTGIIFA 110 (269)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578888888877653
No 35
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=32.31 E-value=1.1e+02 Score=24.04 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHh
Q 032573 45 GGFLTGFFLGFV 56 (137)
Q Consensus 45 GG~i~G~l~~~~ 56 (137)
.|++.|+++++.
T Consensus 83 ~~ll~g~~~~L~ 94 (205)
T PF07895_consen 83 LFLLAGLILSLY 94 (205)
T ss_pred HHHHHHHHHHHH
Confidence 666777776643
No 36
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=31.23 E-value=3.1e+02 Score=22.80 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHHHHHHHHHhhccchhh
Q 032573 13 TNKAAALITLLVIIAINLAIGILPHVDN 40 (137)
Q Consensus 13 ~~~~~~l~~l~~~i~i~l~~g~~p~idn 40 (137)
.+.+|.+.-.+.-.++.+++.++|++.-
T Consensus 133 ~re~kkL~~~lp~~ivll~L~fvP~~g~ 160 (250)
T COG2981 133 AREWKKLGYVLPGAIVLLLLLFVPGVGQ 160 (250)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhcccCC
Confidence 3456667767777788888999998765
No 37
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=30.18 E-value=1.9e+02 Score=27.84 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032573 84 HQYVLWLVSLVLLIAGLTVA 103 (137)
Q Consensus 84 ~~~~l~ii~l~lli~~f~~~ 103 (137)
..+.++.++++++++.|+++
T Consensus 126 Dp~ALR~~a~l~lv~a~~~~ 145 (820)
T PF13779_consen 126 DPFALRALALLLLVAALAFG 145 (820)
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 35778888877777666554
No 38
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=30.07 E-value=2.2e+02 Score=23.37 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhc
Q 032573 44 IGGFLTGFFLGFVLL 58 (137)
Q Consensus 44 iGG~i~G~l~~~~~~ 58 (137)
-||+++|++.+....
T Consensus 102 ~GGligg~l~~~~~~ 116 (278)
T TIGR00544 102 HGGLIGAIIAGIIFS 116 (278)
T ss_pred hHHHHHHHHHHHHHH
Confidence 577788888777664
No 39
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.70 E-value=1.8e+02 Score=29.65 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHh
Q 032573 43 HIGGFLTGFFLGFV 56 (137)
Q Consensus 43 HiGG~i~G~l~~~~ 56 (137)
.-||.++.++..++
T Consensus 141 ~gGGIIG~lLs~lL 154 (1355)
T PRK10263 141 ASGGVIGSLLSTTL 154 (1355)
T ss_pred cccchHHHHHHHHH
Confidence 35777777665543
No 40
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=29.36 E-value=3.6e+02 Score=26.76 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhccCCCc
Q 032573 43 HIGGFLTGFFLGFVLLPRPRY 63 (137)
Q Consensus 43 HiGG~i~G~l~~~~~~~~~~~ 63 (137)
.++-++.++++..++..+..|
T Consensus 114 ~~~a~~~~~~~~~L~~~R~~F 134 (1094)
T PRK02983 114 IIGFAVHVVAIVLLVLARREF 134 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 455666666666666544444
No 41
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=28.67 E-value=2.1e+02 Score=25.62 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhc
Q 032573 44 IGGFLTGFFLGFVLL 58 (137)
Q Consensus 44 iGG~i~G~l~~~~~~ 58 (137)
-||+++|++..+++.
T Consensus 104 ~GGlIGg~l~~~~y~ 118 (460)
T PRK13108 104 WGAVTLGVMGAWIGC 118 (460)
T ss_pred HHHHHHHHHHHHHHH
Confidence 478888887766653
No 42
>PRK12509 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=28.61 E-value=66 Score=24.04 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhh-ccCCCcC
Q 032573 45 GGFLTGFFLGFVL-LPRPRYG 64 (137)
Q Consensus 45 GG~i~G~l~~~~~-~~~~~~~ 64 (137)
|||++|.+.|..+ +.+..++
T Consensus 34 GGF~gGli~a~a~~L~~la~g 54 (137)
T PRK12509 34 GGFIGGLVAAAAFALYLIANG 54 (137)
T ss_pred ccHHHHHHHHHHHHHHHHHcC
Confidence 9999999988664 4444454
No 43
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=27.71 E-value=2.1e+02 Score=25.66 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=21.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHhh
Q 032573 35 LPHVDNFAHIGGFLTGFFLGFVL 57 (137)
Q Consensus 35 ~p~idn~aHiGG~i~G~l~~~~~ 57 (137)
.|+.|-+--+=|-.+|.++++++
T Consensus 381 iPnL~~fisLVGs~~~s~L~li~ 403 (449)
T KOG1304|consen 381 VPNLALFISLVGSVSCSLLALIF 403 (449)
T ss_pred CCcHHhhHHHHHHHHHHHHHHHc
Confidence 89999999999999999999986
No 44
>COG1299 FruA Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]
Probab=27.04 E-value=1e+02 Score=26.66 Aligned_cols=19 Identities=26% Similarity=0.737 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 032573 40 NFAHIGGFLTGFFLGFVLL 58 (137)
Q Consensus 40 n~aHiGG~i~G~l~~~~~~ 58 (137)
..+++||+++||+.|++..
T Consensus 94 ~aGFlG~ii~GflAGy~v~ 112 (343)
T COG1299 94 GAGFLGAIIAGFLAGYVVK 112 (343)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 4699999999999999875
No 45
>PF04039 MnhB: Domain related to MnhB subunit of Na+/H+ antiporter; InterPro: IPR007182 This domain is found in a possible subunit of the Na+/H+ antiporter [, ] as well as in the bacterial NADH dehydrogenase subunit. Usually four transmembrane regions are found in this domain.
Probab=26.18 E-value=86 Score=22.32 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhh
Q 032573 45 GGFLTGFFLGFVL 57 (137)
Q Consensus 45 GG~i~G~l~~~~~ 57 (137)
|||.+|.++|..+
T Consensus 32 GGFqgG~ila~a~ 44 (124)
T PF04039_consen 32 GGFQGGVILAAAF 44 (124)
T ss_pred chHHHHHHHHHHH
Confidence 9999999988664
No 46
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=26.02 E-value=3.8e+02 Score=22.23 Aligned_cols=47 Identities=19% Similarity=0.108 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHHHHHHHhh--ccchhhHHHHHHHHHHHHHHHhhccC
Q 032573 14 NKAAALITLLVIIAINLAIGI--LPHVDNFAHIGGFLTGFFLGFVLLPR 60 (137)
Q Consensus 14 ~~~~~l~~l~~~i~i~l~~g~--~p~idn~aHiGG~i~G~l~~~~~~~~ 60 (137)
+..|+..+++.+-.+.++.++ ...+-....+...+...+.+++.++.
T Consensus 97 k~~RD~~~l~~l~~fl~~~~~l~~qs~~~~l~~ll~~~~~~~~L~~l~~ 145 (325)
T PF11992_consen 97 KTRRDYYQLLLLGLFLLAAAFLFSQSLLFALYLLLFLVLLLAALVLLHQ 145 (325)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344677766655555555555 36777888888888888888887653
No 47
>PRK10845 colicin V production protein; Provisional
Probab=24.85 E-value=3e+02 Score=20.71 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=17.8
Q ss_pred cchhhHHHHHHHHHHHHHHHhhc
Q 032573 36 PHVDNFAHIGGFLTGFFLGFVLL 58 (137)
Q Consensus 36 p~idn~aHiGG~i~G~l~~~~~~ 58 (137)
+.....-++.|.+.|++-|+++.
T Consensus 91 ~~Lg~~dr~lG~ifG~~rg~liv 113 (162)
T PRK10845 91 TGLSGTDRVLGVCFGALRGVLIV 113 (162)
T ss_pred cCCchHHHHHHHHHHHHHHHHHH
Confidence 67778888999999988766543
No 48
>COG3619 Predicted membrane protein [Function unknown]
Probab=24.12 E-value=3.9e+02 Score=21.63 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=22.1
Q ss_pred hHHHhhcccc-cchHHHHHHHHHHHHHHHHHhhccch
Q 032573 3 SELLTNWSLY-TNKAAALITLLVIIAINLAIGILPHV 38 (137)
Q Consensus 3 ~dl~~~W~~~-~~~~~~l~~l~~~i~i~l~~g~~p~i 38 (137)
.+++..+... ..+...+..+++.+++.+..++.|..
T Consensus 75 ~~~~~r~~~~~~~~~l~~~~~ll~~~v~~~~~~~p~~ 111 (226)
T COG3619 75 AELISRRATRSFIPVLLLVSLLLALIALLALGFIPES 111 (226)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHhccccc
Confidence 4555554443 23445556677777888888887653
No 49
>PRK12567 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.10 E-value=1.2e+02 Score=24.33 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhh-ccCCCcC
Q 032573 45 GGFLTGFFLGFVL-LPRPRYG 64 (137)
Q Consensus 45 GG~i~G~l~~~~~-~~~~~~~ 64 (137)
|||.+|.++|.++ +.+..++
T Consensus 120 GGFqgG~i~a~a~iL~~la~g 140 (218)
T PRK12567 120 GGFAAGVAGGTAILLLALSSS 140 (218)
T ss_pred chHHHHHHHHHHHHHHHHHcC
Confidence 9999999987653 4444443
No 50
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.56 E-value=2.3e+02 Score=18.84 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhh-ccchhhHHHHHHHHHHHHHHHhhccCCCcCc
Q 032573 23 LVIIAINLAIGI-LPHVDNFAHIGGFLTGFFLGFVLLPRPRYGW 65 (137)
Q Consensus 23 ~~~i~i~l~~g~-~p~idn~aHiGG~i~G~l~~~~~~~~~~~~~ 65 (137)
.+..+++++.|+ ... ..--+..+++|+++++++. -|..++
T Consensus 18 ~~~~iisfi~Gy~~q~--~~~~~~~~~~g~~~~~lv~-vP~Wp~ 58 (76)
T PF06645_consen 18 IISAIISFIVGYITQS--FSYTFYIYGAGVVLTLLVV-VPPWPF 58 (76)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhe-eCCcHh
Confidence 344556666676 233 3334556677777776653 344443
No 51
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.48 E-value=3.5e+02 Score=21.95 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhc
Q 032573 44 IGGFLTGFFLGFVLL 58 (137)
Q Consensus 44 iGG~i~G~l~~~~~~ 58 (137)
-||+++|++.+....
T Consensus 102 ~GGligg~l~~~~~~ 116 (269)
T PRK00052 102 HGGLIGGILAMLLFC 116 (269)
T ss_pred HHHHHHHHHHHHHHH
Confidence 477777777776653
No 52
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=22.42 E-value=81 Score=21.36 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 032573 40 NFAHIGGFLTGFFLGFVLL 58 (137)
Q Consensus 40 n~aHiGG~i~G~l~~~~~~ 58 (137)
|.+-+-|++.|++.+.+++
T Consensus 47 ~st~i~GlaiGfvfA~vLv 65 (73)
T COG4218 47 NSTRIAGLAIGFVFAGVLV 65 (73)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 4566778888888887765
No 53
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.32 E-value=64 Score=23.54 Aligned_cols=16 Identities=31% Similarity=0.733 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhcc
Q 032573 44 IGGFLTGFFLGFVLLP 59 (137)
Q Consensus 44 iGG~i~G~l~~~~~~~ 59 (137)
+-||+.|+++|+++.+
T Consensus 3 ~i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGR 18 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3468888888887754
No 54
>PF04247 SirB: Invasion gene expression up-regulator, SirB; InterPro: IPR007360 SirB up-regulates Salmonella typhimurium invasion gene transcription. It is, however, not essential for the expression of these genes. Its function is unknown [].
Probab=22.17 E-value=3.1e+02 Score=19.86 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=22.8
Q ss_pred HHHHHHHHhhccchhhH--HHHHHHHHHHHHHHhhc
Q 032573 25 IIAINLAIGILPHVDNF--AHIGGFLTGFFLGFVLL 58 (137)
Q Consensus 25 ~i~i~l~~g~~p~idn~--aHiGG~i~G~l~~~~~~ 58 (137)
-+.+....+..|..|.| +-+.|++.=+.+|..-+
T Consensus 54 gi~L~~~~~~~pf~~~WL~~Kl~~li~YI~lg~~Al 89 (123)
T PF04247_consen 54 GIGLMVILGQYPFVDPWLTAKLVLLIAYIVLGIIAL 89 (123)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667988844 56778877777777765
No 55
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=22.08 E-value=46 Score=21.62 Aligned_cols=21 Identities=38% Similarity=0.497 Sum_probs=12.4
Q ss_pred hcchhhHHHHHHHHHHHHHHH
Q 032573 78 KSKYKTHQYVLWLVSLVLLIA 98 (137)
Q Consensus 78 k~k~k~~~~~l~ii~l~lli~ 98 (137)
|-|.+..|++..++|..++++
T Consensus 25 Klk~~~lk~i~~~vAy~lli~ 45 (58)
T PF10966_consen 25 KLKGKFLKFIVSLVAYILLIV 45 (58)
T ss_pred HHhChHHHHHHHHHHHHHHHH
Confidence 344456667776777665543
No 56
>PRK12507 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=22.03 E-value=93 Score=26.56 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhh-ccCCCcC
Q 032573 45 GGFLTGFFLGFVL-LPRPRYG 64 (137)
Q Consensus 45 GG~i~G~l~~~~~-~~~~~~~ 64 (137)
|||.+|.++|..+ +.+..+|
T Consensus 228 GGFqgG~i~a~a~iL~~la~g 248 (332)
T PRK12507 228 GGFQAGVIFASAIILYAMLYG 248 (332)
T ss_pred chHHHHHHHHHHHHHHHHHcC
Confidence 9999999987653 4444444
No 57
>PTZ00206 amino acid transporter; Provisional
Probab=21.84 E-value=2.6e+02 Score=24.40 Aligned_cols=34 Identities=26% Similarity=0.639 Sum_probs=24.7
Q ss_pred HHHHHHHHHhh-ccchhhHHHHHHHHHHHHHHHhh
Q 032573 24 VIIAINLAIGI-LPHVDNFAHIGGFLTGFFLGFVL 57 (137)
Q Consensus 24 ~~i~i~l~~g~-~p~idn~aHiGG~i~G~l~~~~~ 57 (137)
...++.++++. .|+++-.--+.|-++|.++++++
T Consensus 384 ~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~ 418 (467)
T PTZ00206 384 TLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFIL 418 (467)
T ss_pred HHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHH
Confidence 33444556666 69998888888888888888775
No 58
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.58 E-value=3.9e+02 Score=20.65 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhc
Q 032573 24 VIIAINLAIGIL 35 (137)
Q Consensus 24 ~~i~i~l~~g~~ 35 (137)
++.++.++.|++
T Consensus 89 ~~~if~~~~gi~ 100 (206)
T PF06570_consen 89 FFGIFSLLFGIM 100 (206)
T ss_pred HHHHHHHHHHHH
Confidence 344445555554
No 59
>PRK11677 hypothetical protein; Provisional
Probab=20.84 E-value=1.2e+02 Score=22.73 Aligned_cols=19 Identities=26% Similarity=0.667 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032573 89 WLVSLVLLIAGLTVALVML 107 (137)
Q Consensus 89 ~ii~l~lli~~f~~~lv~~ 107 (137)
|+++++.+++|+++|++..
T Consensus 3 W~~a~i~livG~iiG~~~~ 21 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAM 21 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666677766653
No 60
>PHA00736 hypothetical protein
Probab=20.56 E-value=2.2e+02 Score=19.20 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=12.1
Q ss_pred hhccchhhHHHHHHHHHHHHHH
Q 032573 33 GILPHVDNFAHIGGFLTGFFLG 54 (137)
Q Consensus 33 g~~p~idn~aHiGG~i~G~l~~ 54 (137)
.|+|-.=-.+-+.|+++|+.++
T Consensus 53 dflplfwgi~vifgliag~vlg 74 (79)
T PHA00736 53 DFLPLFWGITVIFGLIAGLVLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444445666777776554
No 61
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.41 E-value=91 Score=20.60 Aligned_cols=15 Identities=33% Similarity=0.518 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhh
Q 032573 43 HIGGFLTGFFLGFVL 57 (137)
Q Consensus 43 HiGG~i~G~l~~~~~ 57 (137)
-++|++.|+.++--.
T Consensus 7 li~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 7 LIVGAVIGFFIARKY 21 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666665443
No 62
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=20.35 E-value=2.1e+02 Score=21.37 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 032573 40 NFAHIGGFLTGFFLGFVLL 58 (137)
Q Consensus 40 n~aHiGG~i~G~l~~~~~~ 58 (137)
.++-=||++-|++.+..+.
T Consensus 55 l~gPTgGyl~gf~~~a~i~ 73 (148)
T PF02632_consen 55 LLGPTGGYLLGFPLAALII 73 (148)
T ss_pred HhcCCChHHHHHHHHHHHH
Confidence 3455577777777766654
No 63
>COG3859 Predicted membrane protein [Function unknown]
Probab=20.09 E-value=2.5e+02 Score=22.19 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhccchh
Q 032573 15 KAAALITLLVIIAINLAIGILPHVD 39 (137)
Q Consensus 15 ~~~~l~~l~~~i~i~l~~g~~p~id 39 (137)
+.+-+....++.++.+++++.|.-|
T Consensus 6 ~l~~LiEiAimaAlA~vLSfi~~~~ 30 (185)
T COG3859 6 RLKLLIEIAIMAALAMVLSFIPIYD 30 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHccccc
Confidence 4456667778888888888888533
Done!