Query 032573
Match_columns 137
No_of_seqs 179 out of 767
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 04:31:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 97.5 9.9E-05 3.4E-09 55.5 4.8 37 21-57 138-178 (181)
2 2nr9_A Protein GLPG homolog; i 97.0 5.5E-05 1.9E-09 57.7 -1.4 24 36-59 162-185 (196)
3 3tx3_A Uncharacterized protein 39.4 40 0.0014 26.2 4.7 44 13-58 138-182 (249)
4 2zxe_G FXYD10, phospholemman-l 38.1 40 0.0014 22.0 3.8 25 86-110 17-41 (74)
5 2jp3_A FXYD domain-containing 36.8 42 0.0014 21.5 3.6 25 86-110 15-39 (67)
6 2hgo_A CASSIICOLIN; toxin, dis 29.2 9.9 0.00034 19.9 -0.3 14 123-136 4-17 (27)
7 2jo1_A Phospholemman; FXYD1, N 28.9 53 0.0018 21.3 3.2 24 87-110 15-38 (72)
8 2k9j_B Integrin beta-3; transm 28.0 52 0.0018 18.9 2.8 21 37-57 6-27 (43)
9 2knc_B Integrin beta-3; transm 18.8 68 0.0023 20.8 2.2 18 37-54 7-24 (79)
10 1lup_A GSMTX2; inhibitor cyste 14.9 57 0.002 17.8 0.9 15 109-123 7-28 (31)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=97.51 E-value=9.9e-05 Score=55.48 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhc----cchhhHHHHHHHHHHHHHHHhh
Q 032573 21 TLLVIIAINLAIGIL----PHVDNFAHIGGFLTGFFLGFVL 57 (137)
Q Consensus 21 ~l~~~i~i~l~~g~~----p~idn~aHiGG~i~G~l~~~~~ 57 (137)
+...++++.+++++. |++||+||+||+++|++.+.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~ 178 (181)
T 2xov_A 138 GLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD 178 (181)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 344445555666663 5999999999999999999876
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=97.03 E-value=5.5e-05 Score=57.66 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.7
Q ss_pred cchhhHHHHHHHHHHHHHHHhhcc
Q 032573 36 PHVDNFAHIGGFLTGFFLGFVLLP 59 (137)
Q Consensus 36 p~idn~aHiGG~i~G~l~~~~~~~ 59 (137)
++|||+||+||+++|++++..+.+
T Consensus 162 ~~v~~~aHlgG~l~G~l~~~~~~~ 185 (196)
T 2nr9_A 162 VEMGNAAHISGLIVGLIWGFIDSK 185 (196)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHh
Confidence 389999999999999999998754
No 3
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=39.39 E-value=40 Score=26.20 Aligned_cols=44 Identities=7% Similarity=0.144 Sum_probs=26.2
Q ss_pred cchHHHHHHHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHHHHHhhc
Q 032573 13 TNKAAALITLLVIIAINLAIGI-LPHVDNFAHIGGFLTGFFLGFVLL 58 (137)
Q Consensus 13 ~~~~~~l~~l~~~i~i~l~~g~-~p~idn~aHiGG~i~G~l~~~~~~ 58 (137)
.+..+.+...+...++.+.+++ +|.+.. -+.=++.|..+|.-+.
T Consensus 138 ~~~l~~l~~~l~~~l~ll~L~f~IP~vg~--vl~~~~~~~~lg~ey~ 182 (249)
T 3tx3_A 138 KREMQKLMYYIPRALGFFLLSLVIPVIGQ--VLWYIFVCWMMSIQYL 182 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHH--HHHHHHHHHHHHHHHH
Confidence 3444455445555566677888 899866 3333566666665543
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=38.12 E-value=40 Score=21.98 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 032573 86 YVLWLVSLVLLIAGLTVALVMLFRG 110 (137)
Q Consensus 86 ~~l~ii~l~lli~~f~~~lv~~~~~ 110 (137)
..+|+.+++...++|+++++++..+
T Consensus 17 ~tLRigGLifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIILLAG 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHheeccchhHHHHHHHHHHHHHcC
Confidence 4688999999999999999887764
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=36.77 E-value=42 Score=21.51 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 032573 86 YVLWLVSLVLLIAGLTVALVMLFRG 110 (137)
Q Consensus 86 ~~l~ii~l~lli~~f~~~lv~~~~~ 110 (137)
..+|+.+++...++|+++++++..+
T Consensus 15 ~tLRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 15 ESLQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHheecchhhHHHHHHHHHHHHHcC
Confidence 3688889998899999998887753
No 6
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=29.19 E-value=9.9 Score=19.95 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=11.5
Q ss_pred ceeecCCCCCCCCC
Q 032573 123 MSCVPTSSWNCEGN 136 (137)
Q Consensus 123 lnCiP~~~w~C~~~ 136 (137)
.||+.+.+.||.++
T Consensus 4 vscv~fgngfcgdn 17 (27)
T 2hgo_A 4 VSCVNFGNGFCGDN 17 (27)
T ss_dssp CSCEEETTTEEECS
T ss_pred eEeEeecCccccCC
Confidence 58999999998765
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.87 E-value=53 Score=21.27 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 032573 87 VLWLVSLVLLIAGLTVALVMLFRG 110 (137)
Q Consensus 87 ~l~ii~l~lli~~f~~~lv~~~~~ 110 (137)
.+++.+++...++|+++++++..+
T Consensus 15 tLRiGGLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 15 SLQIGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHcC
Confidence 578888888888888888887653
No 8
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=28.00 E-value=52 Score=18.92 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=14.0
Q ss_pred chhhHHHHHHHHHHHH-HHHhh
Q 032573 37 HVDNFAHIGGFLTGFF-LGFVL 57 (137)
Q Consensus 37 ~idn~aHiGG~i~G~l-~~~~~ 57 (137)
..|..+-+||.++|++ +|.++
T Consensus 6 ~~n~~~Iv~gvi~~ivliGl~l 27 (43)
T 2k9j_B 6 GPDILVVLLSVMGAILLIGLAA 27 (43)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEeehHHHHHHHHHHHHHHH
Confidence 3566777788888865 45544
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=18.85 E-value=68 Score=20.76 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=12.5
Q ss_pred chhhHHHHHHHHHHHHHH
Q 032573 37 HVDNFAHIGGFLTGFFLG 54 (137)
Q Consensus 37 ~idn~aHiGG~i~G~l~~ 54 (137)
..|..+-+||.++|+++.
T Consensus 7 ~~n~~~Iv~gvi~gilli 24 (79)
T 2knc_B 7 GPDILVVLLSVMGAILLI 24 (79)
T ss_dssp SSCSHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHH
Confidence 356677778888886643
No 10
>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A
Probab=14.94 E-value=57 Score=17.81 Aligned_cols=15 Identities=20% Similarity=0.784 Sum_probs=8.2
Q ss_pred ccCCCCCCC-------Cccccc
Q 032573 109 RGENGNDRC-------RWCHYM 123 (137)
Q Consensus 109 ~~~~~~~~C-------~wC~Yl 123 (137)
.+=|+++.| .||+|-
T Consensus 7 ~~Cd~~~kCCeg~vC~lWCKy~ 28 (31)
T 1lup_A 7 WTCDEERKCCEGLVCRLWCKRI 28 (31)
T ss_dssp CBCCSSCCCCSSSBCSSBCBCC
T ss_pred ccCCchhhhcccchHHHHHHHH
Confidence 333445556 577763
Done!