BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032576
MRPNGEPKRRKSTATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSAD
STANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILP
YSKGGKSTLENCQVLQV

High Scoring Gene Products

Symbol, full name Information P value
AT3G47490 protein from Arabidopsis thaliana 4.9e-37
AT1G18680 protein from Arabidopsis thaliana 4.9e-21

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032576
        (137 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079137 - symbol:AT3G47490 species:3702 "Arabi...   398  4.9e-37   1
TAIR|locus:2035020 - symbol:AT1G18680 species:3702 "Arabi...   247  4.9e-21   1


>TAIR|locus:2079137 [details] [associations]
            symbol:AT3G47490 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004519
            "endonuclease activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM] InterPro:IPR002711 Pfam:PF01844 EMBL:CP002686
            GO:GO:0003676 GO:GO:0004519 InterPro:IPR003615 SMART:SM00507
            EMBL:AL132955 HOGENOM:HOG000005924 EMBL:BT029387 IPI:IPI00545660
            PIR:T45709 RefSeq:NP_190333.1 UniGene:At.35801
            ProteinModelPortal:Q9SN88 SMR:Q9SN88 PRIDE:Q9SN88
            EnsemblPlants:AT3G47490.1 GeneID:823903 KEGG:ath:AT3G47490
            TAIR:At3g47490 InParanoid:Q9SN88 OMA:LIELTAY PhylomeDB:Q9SN88
            ProtClustDB:CLSN2685175 ArrayExpress:Q9SN88 Genevestigator:Q9SN88
            Uniprot:Q9SN88
        Length = 234

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 76/104 (73%), Positives = 83/104 (79%)

Query:    33 SATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWR 92
             SATLLD E     E+  LF        D    PRSFPYSVKQQCWEKAEK++GRDP+RWR
Sbjct:    84 SATLLDRE-----EMG-LFPGS--GYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWR 135

Query:    93 KDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQ 136
             +D LGN+VFRKLVGCPGCLCHDYDHI+PYSKGGKSTLENCQVLQ
Sbjct:   136 RDHLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQ 179


>TAIR|locus:2035020 [details] [associations]
            symbol:AT1G18680 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004519
            "endonuclease activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR002711 Pfam:PF01844 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0003676 GO:GO:0004519
            InterPro:IPR003615 SMART:SM00507 EMBL:AC011809 EMBL:BT005697
            EMBL:AK118073 IPI:IPI00526222 PIR:E86320 RefSeq:NP_173303.1
            UniGene:At.41783 ProteinModelPortal:Q9M9T9 SMR:Q9M9T9
            EnsemblPlants:AT1G18680.1 GeneID:838449 KEGG:ath:AT1G18680
            TAIR:At1g18680 eggNOG:NOG312551 HOGENOM:HOG000005924
            InParanoid:Q9M9T9 OMA:AGNIVCK PhylomeDB:Q9M9T9
            ProtClustDB:CLSN2682415 ArrayExpress:Q9M9T9 Genevestigator:Q9M9T9
            Uniprot:Q9M9T9
        Length = 186

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 41/72 (56%), Positives = 51/72 (70%)

Query:    65 PRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKG 124
             PR F    K +CW  A+ V GR P+RWRKD  GN+V ++   C GCLC +YDHI+PYSKG
Sbjct:    40 PRFFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNCNGCLCFEYDHIVPYSKG 99

Query:   125 GKSTLENCQVLQ 136
             G+S  ENCQ+LQ
Sbjct:   100 GESIAENCQILQ 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       118   0.00091  102 3  11 22  0.38    31
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.87u 0.11s 11.98t   Elapsed:  00:00:01
  Total cpu time:  11.87u 0.11s 11.98t   Elapsed:  00:00:01
  Start:  Thu May  9 16:50:52 2013   End:  Thu May  9 16:50:53 2013

Back to top