BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032576
         (137 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P38274|HSL7_YEAST Protein arginine N-methyltransferase HSL7 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=HSL7 PE=1
           SV=1
          Length = 827

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 47  ISTLFTDLRISSADSTANPRSFPYSVKQQ--CWEKAEKVRGRDPDRWR------KDALGN 98
           IS LF D ++S      NP+++ Y  K+   CW+   K+   D  +W+      K    +
Sbjct: 399 ISMLFMDSKVSIIAIEKNPQAYLYLQKRNFDCWDNRVKLIKEDMTKWQINEPSEKRIQID 458

Query: 99  VVFRKLVGCPGC 110
           +   +L+G  GC
Sbjct: 459 LCISELLGSFGC 470


>sp|Q2JMR8|RSMA_SYNJB Ribosomal RNA small subunit methyltransferase A OS=Synechococcus
           sp. (strain JA-2-3B'a(2-13)) GN=rsmA PE=3 SV=1
          Length = 282

 Score = 29.6 bits (65), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 10  RKSTATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRSFP 69
           +K  A R  +   S+  G  ++R+  L D EL      +      ++ SA     PR  P
Sbjct: 138 QKELAERLQAGPGSKAYGALSLRTQYLADCELICRVPPTAFKPAPKVESAVIRLTPRPAP 197

Query: 70  YSVKQQCWEKAEKVRGRDPDRWR-KDALGNVVFRKLVGC 107
             V+  CW      +G    R +  +ALG++V R++V  
Sbjct: 198 TPVRDPCWFNHLLRQGFSTRRKKLVNALGSLVEREVVAA 236


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.130    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,155,036
Number of Sequences: 539616
Number of extensions: 1902583
Number of successful extensions: 5683
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5645
Number of HSP's gapped (non-prelim): 52
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)