Query 032576
Match_columns 137
No_of_seqs 177 out of 472
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgp_A HNH endonuclease; Q39X4 98.8 3.4E-10 1.2E-14 81.8 -0.7 33 105-137 36-74 (112)
2 1fr2_B Colicin E9; protein-pro 95.9 0.0041 1.4E-07 47.2 2.5 63 62-135 41-122 (134)
3 2jb0_B Colicin E7; hydrolase/i 95.3 0.0017 5.8E-08 49.1 -1.3 63 62-135 38-119 (131)
4 7cei_B Protein (colicin E7 imm 91.6 0.063 2.2E-06 43.1 1.6 70 62-135 113-194 (206)
5 1e7l_A GP49, recombination end 57.0 9.1 0.00031 29.3 3.4 18 105-122 21-46 (157)
6 3dcl_A TM1086; SAD, structural 34.3 19 0.00066 30.0 2.2 30 91-120 28-65 (284)
7 3alr_A Nanos protein; zinc-fin 31.9 18 0.00062 26.2 1.4 21 93-113 58-80 (106)
8 2czr_A TBP-interacting protein 29.1 13 0.00046 29.8 0.4 16 98-113 148-163 (226)
9 1rfh_A RAS association (ralgds 22.0 30 0.001 21.5 0.9 20 93-112 25-44 (59)
10 2fnf_X Putative RAS effector N 17.7 34 0.0012 22.2 0.5 20 93-112 38-57 (72)
No 1
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=98.81 E-value=3.4e-10 Score=81.80 Aligned_cols=33 Identities=33% Similarity=0.379 Sum_probs=30.5
Q ss_pred CCCCCCCC------CccceeeeccCCCCCchhhhhhhcC
Q 032576 105 VGCPGCLC------HDYDHILPYSKGGKSTLENCQVLQV 137 (137)
Q Consensus 105 ~~C~~Cg~------~EiDHIiP~SkGG~t~~eNlqlLc~ 137 (137)
+.|.+||. +++|||+|+|+||.++++||++||.
T Consensus 36 ~~C~yCg~~~~~~~~~vDHIiP~s~gG~~~~~Nl~~lC~ 74 (112)
T 2qgp_A 36 GICHYCGEIFPPEELTMDHLVPVVRGGKSTRGNVVPACK 74 (112)
T ss_dssp TBCTTTCCBCCGGGEEEEESSCTTTTCCCSTTTEEEEEH
T ss_pred CcCCCCCCcCCCCCcEEEEEeehhcCCCCChhhChhhCH
Confidence 68999988 4999999999999999999999983
No 2
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=95.85 E-value=0.0041 Score=47.15 Aligned_cols=63 Identities=21% Similarity=0.427 Sum_probs=42.7
Q ss_pred CCCCCCCCH--HHHHHHHHhhh---h-cc------------CCCCcchhccccCCeeeecCCCCCCCCCCccceeeeccC
Q 032576 62 TANPRSFPY--SVKQQCWEKAE---K-VR------------GRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSK 123 (137)
Q Consensus 62 ~~~~R~F~~--~~k~~~w~k~~---~-v~------------G~dp~r~R~Da~Gnvv~r~~~~C~~Cg~~EiDHIiP~Sk 123 (137)
.++.|.|.. ++|+++|..-. . +. |+.|-.-..|-+|. =..+|+||+.|.+.
T Consensus 41 kLRGr~F~sFd~FR~afW~eVs~DpeL~~QF~~~N~~rmk~G~aP~~~~~e~vG~-----------r~kfelHH~~~I~~ 109 (134)
T 1fr2_B 41 KLRDKEFKSFDDFRKAVWEEVSKDPELSKNLNPSNKSSVSKGYSPFTPKNQQVGG-----------RKVYELHHDKPISQ 109 (134)
T ss_dssp HHTTCEESSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHTTCCCBCCGGGCBTT-----------BCBCEEEESSCGGG
T ss_pred HhcCCcCCCHHHHHHHHHHHHhcCHHHHHHhCHHHHHHHHCCCCCCCcchhhcCC-----------eeEEEEEecchhhc
Confidence 677788887 99999996542 1 13 33333222232221 12379999999999
Q ss_pred CCC-Cchhhhhhh
Q 032576 124 GGK-STLENCQVL 135 (137)
Q Consensus 124 GG~-t~~eNlqlL 135 (137)
||. .+++||.++
T Consensus 110 GG~VYdlDNL~i~ 122 (134)
T 1fr2_B 110 GGEVYDMDNIRVT 122 (134)
T ss_dssp TCCSSBGGGEEEE
T ss_pred CCeeeeeecEEEc
Confidence 999 899999886
No 3
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=95.31 E-value=0.0017 Score=49.07 Aligned_cols=63 Identities=21% Similarity=0.449 Sum_probs=40.9
Q ss_pred CCCCCCCCH--HHHHHHHHhhh---h-c------------cCCCCcchhccccCCeeeecCCCCCCCCCCccceeeeccC
Q 032576 62 TANPRSFPY--SVKQQCWEKAE---K-V------------RGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSK 123 (137)
Q Consensus 62 ~~~~R~F~~--~~k~~~w~k~~---~-v------------~G~dp~r~R~Da~Gnvv~r~~~~C~~Cg~~EiDHIiP~Sk 123 (137)
.+..|.|.. ++++++|..-. . + .|+.|-.-..|-+|. =..+|+||+.|.+.
T Consensus 38 kLRGr~F~sFd~FR~afW~eVs~DpeL~~QF~~~N~~rmk~G~aP~~~~~e~vG~-----------r~kfelHH~~~I~~ 106 (131)
T 2jb0_B 38 KLRDKEFKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGK-----------RTSFELHHEKPISQ 106 (131)
T ss_dssp HHTTCEESSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHTTCCCBCCGGGCBTT-----------BCBCEEEESSCCC-
T ss_pred HHcCCcCCCHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHCCCCCCCCchhhcCC-----------eeEEEEEeechhhc
Confidence 567788887 99999996532 1 1 333333333333321 12379999999999
Q ss_pred CCC-Cchhhhhhh
Q 032576 124 GGK-STLENCQVL 135 (137)
Q Consensus 124 GG~-t~~eNlqlL 135 (137)
||. .+++||.++
T Consensus 107 GG~VYdlDNL~i~ 119 (131)
T 2jb0_B 107 NGGVYDMDNISVV 119 (131)
T ss_dssp -CCSSBGGGEEEE
T ss_pred CCeeeeeeeEEEc
Confidence 999 899999886
No 4
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=91.58 E-value=0.063 Score=43.14 Aligned_cols=70 Identities=20% Similarity=0.349 Sum_probs=42.3
Q ss_pred CCCCCCCC--HHHHHHHHHhhhhccCCCCcchhccccCCeeeecCCCCCCC---------CCCccceeeeccCCCC-Cch
Q 032576 62 TANPRSFP--YSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGC---------LCHDYDHILPYSKGGK-STL 129 (137)
Q Consensus 62 ~~~~R~F~--~~~k~~~w~k~~~v~G~dp~r~R~Da~Gnvv~r~~~~C~~C---------g~~EiDHIiP~SkGG~-t~~ 129 (137)
.+..|.|. ..+++++|.--. -||+...+=--+|...-..+.-|+- ..||+||+.|.+.||. -++
T Consensus 113 KLRGR~F~sFD~FR~AFWkeVa----~DPeLskQF~~~N~~~Mk~G~AP~ap~~e~vG~R~kfELHH~~~I~~GG~VYDi 188 (206)
T 7cei_B 113 KLRDKEFKSFDDFRKKFWEEVS----KDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKRTSFELHHEKPISQNGGVYDM 188 (206)
T ss_dssp HHTTCBCSSHHHHHHHHHHHHT----TCTTTGGGSCHHHHHHHHTTCCCBCCGGGCBTTBCBCEEEESSCSSSSCCSSBT
T ss_pred HhcCCcCCCHHHHHHHHHHHHc----cCHHHHHHHhHHHHHHHHCCCCCCCChhhhcCCeeeEEeecCcccccCCeeecc
Confidence 56677776 589999997643 2333333211112211111222221 1379999999999999 599
Q ss_pred hhhhhh
Q 032576 130 ENCQVL 135 (137)
Q Consensus 130 eNlqlL 135 (137)
+||.++
T Consensus 189 DNLrI~ 194 (206)
T 7cei_B 189 DNISVV 194 (206)
T ss_dssp TSEEEE
T ss_pred cceeec
Confidence 999886
No 5
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=57.04 E-value=9.1 Score=29.33 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.4
Q ss_pred CCCCCCCCC--------ccceeeecc
Q 032576 105 VGCPGCLCH--------DYDHILPYS 122 (137)
Q Consensus 105 ~~C~~Cg~~--------EiDHIiP~S 122 (137)
+.|+.|+.. .+||.-+..
T Consensus 21 g~C~IC~~~l~~~~~~~~vDHdH~~~ 46 (157)
T 1e7l_A 21 GKCLICQRELNPDVQANHLDHDHELN 46 (157)
T ss_dssp TBCTTTCCBCCSSGGGSEEEECCCCS
T ss_pred CcCcccCCccccccccccccCCCCCC
Confidence 789999872 789987665
No 6
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=34.34 E-value=19 Score=30.03 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=23.9
Q ss_pred hhccccCCeeeecC--------CCCCCCCCCccceeee
Q 032576 91 WRKDALGNVVFRKL--------VGCPGCLCHDYDHILP 120 (137)
Q Consensus 91 ~R~Da~Gnvv~r~~--------~~C~~Cg~~EiDHIiP 120 (137)
||+|..|+...... ..-.+|+.|..|||-|
T Consensus 28 yrv~~dG~p~ilP~~GGItyNv~vGD~afg~aGDHvEP 65 (284)
T 3dcl_A 28 YSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEP 65 (284)
T ss_dssp CEECTTSCEECCCCSBSEESSCCTTSBSSSCBSSSCCC
T ss_pred eEECCCCCEeeccccCcEEEeeeeCCccccccccccCC
Confidence 99999998877742 1125899999999988
No 7
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=31.89 E-value=18 Score=26.24 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.0
Q ss_pred ccccCCeeee--cCCCCCCCCCC
Q 032576 93 KDALGNVVFR--KLVGCPGCLCH 113 (137)
Q Consensus 93 ~Da~Gnvv~r--~~~~C~~Cg~~ 113 (137)
+|..|.|++= ..+.|+.|+..
T Consensus 58 Kd~~G~V~CPvLR~Y~CpiCGAT 80 (106)
T 3alr_A 58 KNRDGDVMCPYLRQYKCPLCGAT 80 (106)
T ss_dssp BCTTSCBCCTTGGGCCCTTTCCC
T ss_pred ECCCCCCcCCCcccccCCCCCCc
Confidence 6889999986 57899999985
No 8
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=29.06 E-value=13 Score=29.82 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=14.4
Q ss_pred CeeeecCCCCCCCCCC
Q 032576 98 NVVFRKLVGCPGCLCH 113 (137)
Q Consensus 98 nvv~r~~~~C~~Cg~~ 113 (137)
..|+||+++|..|+.+
T Consensus 148 DyvFWQFYKCe~CgKY 163 (226)
T 2czr_A 148 DYIFWQFYKCEECGKY 163 (226)
T ss_dssp TEEEEEEEECTTTCCE
T ss_pred ceEEEEEEehhhcCce
Confidence 4799999999999985
No 9
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=21.98 E-value=30 Score=21.46 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=15.8
Q ss_pred ccccCCeeeecCCCCCCCCC
Q 032576 93 KDALGNVVFRKLVGCPGCLC 112 (137)
Q Consensus 93 ~Da~Gnvv~r~~~~C~~Cg~ 112 (137)
=|-+|..|.++...|..|+.
T Consensus 25 C~~C~~~i~kqg~kC~~C~~ 44 (59)
T 1rfh_A 25 CDLCGREVLRQALRCANCKF 44 (59)
T ss_dssp CTTTCSEECSCCEECTTTSC
T ss_pred chhcchhhhhCccEeCCCCC
Confidence 36788888778888998865
No 10
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=17.68 E-value=34 Score=22.19 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=15.5
Q ss_pred ccccCCeeeecCCCCCCCCC
Q 032576 93 KDALGNVVFRKLVGCPGCLC 112 (137)
Q Consensus 93 ~Da~Gnvv~r~~~~C~~Cg~ 112 (137)
=|-+|.+|.++...|..|+.
T Consensus 38 C~~C~~~l~~qG~kC~~C~~ 57 (72)
T 2fnf_X 38 CDLCGREVLRQALRCANCKF 57 (72)
T ss_dssp CTTTSSBCSSCCEECTTSSC
T ss_pred hhhhhHHHHhCcCccCCCCC
Confidence 46778888777788988865
Done!