Query 032577
Match_columns 137
No_of_seqs 172 out of 1014
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:15:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1577 Aldo/keto reductase fa 100.0 8.4E-38 1.8E-42 235.7 12.3 130 1-131 1-147 (300)
2 COG0656 ARA1 Aldo/keto reducta 100.0 8.6E-38 1.9E-42 235.0 12.1 123 5-131 3-129 (280)
3 COG0667 Tas Predicted oxidored 100.0 1.1E-32 2.3E-37 212.3 12.4 127 5-136 1-152 (316)
4 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5.4E-31 1.2E-35 198.5 12.8 118 15-136 2-125 (267)
5 PRK11565 dkgA 2,5-diketo-D-glu 100.0 8.7E-31 1.9E-35 198.2 12.9 120 6-131 5-126 (275)
6 TIGR01293 Kv_beta voltage-depe 100.0 1.1E-30 2.5E-35 200.9 12.7 126 7-136 1-146 (317)
7 PRK10625 tas putative aldo-ket 100.0 5.4E-30 1.2E-34 199.2 13.8 109 5-118 1-136 (346)
8 PRK09912 L-glyceraldehyde 3-ph 100.0 5.7E-30 1.2E-34 199.2 13.2 129 4-135 12-163 (346)
9 PLN02587 L-galactose dehydroge 100.0 4.3E-30 9.2E-35 197.5 12.0 126 7-136 1-148 (314)
10 KOG1575 Voltage-gated shaker-l 100.0 2E-29 4.3E-34 193.3 12.7 128 5-136 12-161 (336)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 5.7E-29 1.2E-33 188.0 13.2 120 7-131 1-136 (285)
12 PRK10376 putative oxidoreducta 100.0 3.6E-28 7.8E-33 185.1 12.2 123 1-131 1-153 (290)
13 PRK14863 bifunctional regulato 99.9 6.3E-27 1.4E-31 178.6 8.1 116 13-136 2-138 (292)
14 PF00248 Aldo_ket_red: Aldo/ke 99.9 3.7E-26 8.1E-31 172.5 10.6 110 18-131 1-125 (283)
15 COG1453 Predicted oxidoreducta 99.9 7.8E-25 1.7E-29 168.1 8.8 118 5-132 1-131 (391)
16 KOG1576 Predicted oxidoreducta 99.9 4.2E-24 9.1E-29 158.5 9.8 110 4-119 21-149 (342)
17 COG4989 Predicted oxidoreducta 99.9 9.5E-25 2.1E-29 160.6 6.0 129 5-137 1-154 (298)
18 COG1748 LYS9 Saccharopine dehy 92.6 1.2 2.5E-05 35.8 8.6 80 28-119 78-159 (389)
19 TIGR00640 acid_CoA_mut_C methy 77.8 19 0.0004 24.3 9.8 105 17-137 3-110 (132)
20 PRK08195 4-hyroxy-2-oxovalerat 65.3 61 0.0013 25.5 8.2 37 8-49 9-45 (337)
21 PF06309 Torsin: Torsin; Inte 65.2 40 0.00087 22.8 8.1 84 51-136 27-120 (127)
22 PF02679 ComA: (2R)-phospho-3- 58.3 72 0.0016 24.1 7.1 78 28-115 83-168 (244)
23 PRK05283 deoxyribose-phosphate 52.2 1E+02 0.0022 23.4 7.6 83 20-109 137-227 (257)
24 PRK01492 rnpA ribonuclease P; 51.4 69 0.0015 21.2 6.5 63 73-135 47-117 (118)
25 PF01118 Semialdhyde_dh: Semia 51.1 24 0.00052 23.0 3.3 27 27-53 75-101 (121)
26 PRK09856 fructoselysine 3-epim 50.7 1E+02 0.0022 22.8 8.4 32 18-49 2-33 (275)
27 PF01527 HTH_Tnp_1: Transposas 50.0 6.6 0.00014 23.2 0.4 40 26-65 7-47 (76)
28 cd02072 Glm_B12_BD B12 binding 44.3 98 0.0021 20.9 9.7 104 21-137 4-113 (128)
29 KOG2264 Exostosin EXT1L [Signa 44.3 83 0.0018 27.1 5.9 58 54-123 634-692 (907)
30 COG3623 SgaU Putative L-xylulo 44.2 23 0.0005 26.8 2.6 40 11-50 65-117 (287)
31 COG1448 TyrB Aspartate/tyrosin 42.1 1.1E+02 0.0023 24.9 6.1 76 54-134 106-203 (396)
32 PF00388 PI-PLC-X: Phosphatidy 40.8 24 0.00052 23.8 2.1 17 32-48 29-45 (146)
33 PRK09413 IS2 repressor TnpA; R 40.4 70 0.0015 21.0 4.3 40 26-65 13-53 (121)
34 PRK04390 rnpA ribonuclease P; 39.1 1.1E+02 0.0024 20.1 6.6 49 72-120 44-94 (120)
35 PRK10508 hypothetical protein; 38.7 39 0.00085 26.5 3.2 22 87-108 286-307 (333)
36 smart00148 PLCXc Phospholipase 38.5 1.2E+02 0.0026 20.3 6.0 18 31-48 30-47 (135)
37 TIGR03234 OH-pyruv-isom hydrox 38.5 1.6E+02 0.0034 21.5 10.0 37 29-65 14-51 (254)
38 PRK02261 methylaspartate mutas 38.4 1.2E+02 0.0027 20.4 10.9 110 17-137 4-117 (137)
39 COG3215 PilZ Tfp pilus assembl 37.6 1.1E+02 0.0024 20.1 4.6 47 29-82 20-68 (117)
40 PRK00730 rnpA ribonuclease P; 36.3 1.4E+02 0.0031 20.4 6.2 50 72-122 46-97 (138)
41 KOG2404 Fumarate reductase, fl 33.9 67 0.0015 25.8 3.8 38 97-134 236-278 (477)
42 PF01680 SOR_SNZ: SOR/SNZ fami 32.3 29 0.00062 25.2 1.4 14 98-111 87-100 (208)
43 PF08671 SinI: Anti-repressor 31.7 60 0.0013 16.2 2.1 16 29-44 3-18 (30)
44 PF02801 Ketoacyl-synt_C: Beta 31.6 1.2E+02 0.0026 19.6 4.3 32 87-118 22-55 (119)
45 PF01207 Dus: Dihydrouridine s 31.3 2.5E+02 0.0053 21.7 6.7 104 18-130 55-177 (309)
46 COG4900 Predicted metallopepti 31.2 54 0.0012 21.9 2.4 30 90-119 7-39 (133)
47 PF03102 NeuB: NeuB family; I 30.9 2.3E+02 0.005 21.2 6.7 81 25-120 52-153 (241)
48 COG3607 Predicted lactoylgluta 29.3 63 0.0014 22.0 2.6 27 27-53 81-107 (133)
49 TIGR00742 yjbN tRNA dihydrouri 29.1 2.8E+02 0.006 21.6 8.5 89 19-115 57-162 (318)
50 PF01487 DHquinase_I: Type I 3 27.6 2.4E+02 0.0052 20.4 9.0 83 23-112 69-151 (224)
51 COG0635 HemN Coproporphyrinoge 27.5 3.4E+02 0.0073 22.0 7.9 51 16-66 148-214 (416)
52 cd07943 DRE_TIM_HOA 4-hydroxy- 27.5 1.6E+02 0.0036 21.9 4.9 82 29-118 112-195 (263)
53 smart00596 PRE_C2HC PRE_C2HC d 27.5 1E+02 0.0022 18.6 3.0 29 94-122 2-30 (69)
54 KOG2371 Molybdopterin biosynth 27.2 1.3E+02 0.0029 24.3 4.4 49 29-82 215-263 (411)
55 COG3185 4-hydroxyphenylpyruvat 26.9 63 0.0014 25.8 2.6 24 29-52 254-277 (363)
56 COG5016 Pyruvate/oxaloacetate 26.9 3.7E+02 0.0079 22.3 8.0 39 27-65 96-137 (472)
57 PF05049 IIGP: Interferon-indu 26.8 76 0.0016 25.5 3.1 88 20-119 95-202 (376)
58 PF01890 CbiG_C: Cobalamin syn 26.5 2E+02 0.0042 19.0 5.1 42 87-128 12-53 (121)
59 TIGR01501 MthylAspMutase methy 26.4 2.1E+02 0.0046 19.4 9.9 79 18-107 3-83 (134)
60 PF04748 Polysacc_deac_2: Dive 26.4 2.6E+02 0.0057 20.4 6.1 84 26-114 71-182 (213)
61 PRK05406 LamB/YcsF family prot 26.3 2.9E+02 0.0063 20.9 6.1 71 20-103 13-95 (246)
62 PRK09997 hydroxypyruvate isome 26.2 2.7E+02 0.0058 20.4 9.5 36 30-65 16-52 (258)
63 cd07053 BMC_PduT_repeat1 1,2-p 26.2 1.4E+02 0.0031 18.0 3.6 31 88-118 46-76 (76)
64 cd08555 PI-PLCc_GDPD_SF Cataly 25.7 80 0.0017 22.0 2.8 21 27-47 11-31 (179)
65 KOG2367 Alpha-isopropylmalate 25.6 2.8E+02 0.0061 23.4 6.1 84 27-115 202-287 (560)
66 cd00885 cinA Competence-damage 25.2 2.4E+02 0.0053 19.7 7.0 46 31-81 20-66 (170)
67 COG1751 Uncharacterized conser 25.1 2.6E+02 0.0056 19.9 5.9 69 29-105 14-84 (186)
68 PRK09567 nirA ferredoxin-nitri 25.0 90 0.0019 26.6 3.4 60 74-134 115-179 (593)
69 TIGR03217 4OH_2_O_val_ald 4-hy 24.9 3.4E+02 0.0074 21.3 8.5 37 8-49 8-44 (333)
70 PF13653 GDPD_2: Glycerophosph 24.9 84 0.0018 15.6 2.0 18 32-49 10-27 (30)
71 PRK14865 rnpA ribonuclease P; 24.7 2.1E+02 0.0045 18.7 5.2 47 72-119 45-93 (116)
72 PF11181 YflT: Heat induced st 24.4 1.4E+02 0.003 18.9 3.5 29 52-81 6-34 (103)
73 COG1540 Uncharacterized protei 24.4 83 0.0018 23.8 2.7 17 28-44 43-59 (252)
74 KOG0173 20S proteasome, regula 24.4 79 0.0017 24.1 2.6 19 26-44 183-201 (271)
75 cd02930 DCR_FMN 2,4-dienoyl-Co 24.3 3.5E+02 0.0076 21.2 7.6 37 73-110 202-243 (353)
76 cd00411 Asparaginase Asparagin 24.2 1.1E+02 0.0025 23.8 3.6 23 30-52 250-272 (323)
77 cd00945 Aldolase_Class_I Class 24.0 2.4E+02 0.0053 19.2 7.6 78 28-109 64-147 (201)
78 TIGR02159 PA_CoA_Oxy4 phenylac 23.9 2.5E+02 0.0054 19.3 6.2 46 88-133 40-88 (146)
79 PF04481 DUF561: Protein of un 23.9 1E+02 0.0023 23.1 3.1 31 22-52 20-50 (242)
80 cd07491 Peptidases_S8_7 Peptid 23.9 3E+02 0.0066 20.3 5.9 37 29-65 89-132 (247)
81 PRK01903 rnpA ribonuclease P; 23.6 2.4E+02 0.0052 19.0 7.1 46 72-117 50-109 (133)
82 PRK05963 3-oxoacyl-(acyl carri 23.6 1.6E+02 0.0034 22.5 4.3 47 89-135 53-103 (326)
83 COG1210 GalU UDP-glucose pyrop 23.3 93 0.002 24.1 2.9 31 15-45 8-52 (291)
84 cd07187 YvcK_like family of mo 23.2 3.6E+02 0.0078 21.0 6.2 59 55-119 196-255 (308)
85 PHA02595 tk.4 hypothetical pro 23.2 68 0.0015 22.1 2.0 27 13-39 115-141 (154)
86 COG2185 Sbm Methylmalonyl-CoA 23.1 2.6E+02 0.0057 19.3 9.8 104 17-135 13-118 (143)
87 cd02803 OYE_like_FMN_family Ol 23.0 3.5E+02 0.0075 20.6 7.4 36 74-110 207-247 (327)
88 PRK04820 rnpA ribonuclease P; 22.6 2.7E+02 0.0058 19.2 5.8 46 73-118 49-96 (145)
89 cd07948 DRE_TIM_HCS Saccharomy 22.5 3.4E+02 0.0074 20.4 8.8 38 8-50 6-43 (262)
90 COG0155 CysI Sulfite reductase 22.4 3.5E+02 0.0076 22.8 6.3 59 74-133 56-119 (510)
91 cd01012 YcaC_related YcaC rela 22.3 2.6E+02 0.0056 18.9 5.6 71 29-111 23-94 (157)
92 PRK00499 rnpA ribonuclease P; 22.3 2.3E+02 0.005 18.3 5.6 48 72-120 38-88 (114)
93 TIGR02435 CobG precorrin-3B sy 22.0 3.5E+02 0.0075 21.6 6.1 60 73-134 15-79 (390)
94 PF13480 Acetyltransf_6: Acety 22.0 1E+02 0.0022 19.6 2.6 20 31-50 116-135 (142)
95 PF03721 UDPG_MGDP_dh_N: UDP-g 21.6 3E+02 0.0065 19.4 5.6 41 89-129 124-164 (185)
96 TIGR02041 CysI sulfite reducta 21.6 1.3E+02 0.0028 25.3 3.7 58 76-134 62-124 (541)
97 PRK12569 hypothetical protein; 21.4 3.7E+02 0.008 20.4 6.2 71 20-103 14-98 (245)
98 cd04740 DHOD_1B_like Dihydroor 21.4 3.6E+02 0.0079 20.3 8.0 76 27-111 100-186 (296)
99 KOG1606 Stationary phase-induc 21.3 52 0.0011 24.6 1.1 16 98-113 94-109 (296)
100 PF02629 CoA_binding: CoA bind 21.3 1.2E+02 0.0025 18.8 2.7 20 27-46 71-90 (96)
101 cd00959 DeoC 2-deoxyribose-5-p 21.2 3.2E+02 0.0068 19.5 7.2 33 21-53 123-155 (203)
102 PHA00022 VII minor coat protei 21.2 95 0.0021 15.1 1.7 14 124-137 5-18 (28)
103 cd02907 Macro_Af1521_BAL_like 21.1 92 0.002 21.7 2.4 26 14-39 116-141 (175)
104 TIGR01835 HMG-CoA-S_prok 3-hyd 21.0 2E+02 0.0043 22.8 4.5 38 91-128 206-245 (379)
105 COG1400 SEC65 Signal recogniti 20.8 1.1E+02 0.0023 19.6 2.4 27 94-125 35-61 (93)
106 PF03435 Saccharop_dh: Sacchar 20.7 99 0.0021 24.3 2.7 23 28-50 77-99 (386)
107 TIGR01608 citD citrate lyase a 20.7 1.4E+02 0.003 19.1 2.8 24 90-113 43-66 (92)
108 cd03412 CbiK_N Anaerobic cobal 20.4 1.8E+02 0.0039 19.2 3.6 76 18-97 5-94 (127)
109 PF07302 AroM: AroM protein; 20.4 3.7E+02 0.008 20.0 7.0 83 25-115 9-95 (221)
110 PLN02431 ferredoxin--nitrite r 20.4 1.2E+02 0.0025 25.9 3.2 59 75-134 136-200 (587)
111 KOG3206 Alpha-tubulin folding 20.4 49 0.0011 24.5 0.8 14 41-54 199-212 (234)
112 cd07940 DRE_TIM_IPMS 2-isoprop 20.3 96 0.0021 23.2 2.5 23 29-51 201-223 (268)
113 COG0432 Uncharacterized conser 20.2 18 0.00039 24.8 -1.4 8 18-25 108-115 (137)
114 PRK13384 delta-aminolevulinic 20.2 2.6E+02 0.0055 22.1 4.7 56 23-82 55-121 (322)
No 1
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=8.4e-38 Score=235.71 Aligned_cols=130 Identities=49% Similarity=0.849 Sum_probs=120.4
Q ss_pred CCCCCceeeCCCCCccccceeecccCChhHHHHHHHHHHHcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEe
Q 032577 1 MEEGFRFFKLNAGAKIPSLGLGTWAAAPDVVGDAIAAAVKVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITS 80 (137)
Q Consensus 1 m~~~~~~~~l~~g~~v~~lglGt~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~t 80 (137)
|++.. +++|++|.+||.||||||+.+++++.++++.|+++||||||||..|+||+.+|++|++.++++.++|+++||+|
T Consensus 1 M~~~~-~~~Ln~G~~mP~iGlGTw~~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTS 79 (300)
T KOG1577|consen 1 MSSKT-TVKLNNGFKMPIIGLGTWQSPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITS 79 (300)
T ss_pred CCccc-eEeccCCCccceeeeEecccChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeee
Confidence 66655 88999999999999999998889999999999999999999999999999999999999988889999999999
Q ss_pred ccCCCCCCchhHHHHHHHHHHHcCCCceeEEEEeecCCCCc-----------------hHHHHHHHHH
Q 032577 81 KLWCNNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQH-----------------LFIFHLLIEV 131 (137)
Q Consensus 81 K~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~-----------------~~~~~~l~~~ 131 (137)
|+|+..+.++.++.++++||++||+||||||++|||...++ .++|++|+++
T Consensus 80 Klw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~ 147 (300)
T KOG1577|consen 80 KLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKL 147 (300)
T ss_pred ccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987621 2578888875
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=8.6e-38 Score=234.99 Aligned_cols=123 Identities=42% Similarity=0.666 Sum_probs=113.4
Q ss_pred CceeeCCCCCccccceeecccCChhH-HHHHHHHHHHcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEeccC
Q 032577 5 FRFFKLNAGAKIPSLGLGTWAAAPDV-VGDAIAAAVKVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKLW 83 (137)
Q Consensus 5 ~~~~~l~~g~~v~~lglGt~~~~~~~-~~~~l~~a~~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~ 83 (137)
+.+.++++|.+||.||||||+++.++ +.+++..|++.|||+||||..||||+.+|+++++. + ++|+++||+||+|
T Consensus 3 ~~~~~l~~g~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~-v~ReelFittKvw 78 (280)
T COG0656 3 KTKVTLNNGVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---G-VPREELFITTKVW 78 (280)
T ss_pred CceeecCCCCcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---C-CCHHHeEEEeecC
Confidence 56688899999999999999998777 99999999999999999999999999999999984 5 8999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHcCCCceeEEEEeecCCC-Cc--hHHHHHHHHH
Q 032577 84 CNNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTI-QH--LFIFHLLIEV 131 (137)
Q Consensus 84 ~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~-~~--~~~~~~l~~~ 131 (137)
+.+++++.+.+++++||++||+||||||++|||.+. .. .++|++|+++
T Consensus 79 ~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l 129 (280)
T COG0656 79 PSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEEL 129 (280)
T ss_pred CccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999874 22 4888888875
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.1e-32 Score=212.26 Aligned_cols=127 Identities=27% Similarity=0.443 Sum_probs=107.4
Q ss_pred CceeeCC-CCCccccceeecccCCh-------hHHHHHHHHHHHcCCCeeeCccccc---CHHHHHHHHHhhhhCCCCCC
Q 032577 5 FRFFKLN-AGAKIPSLGLGTWAAAP-------DVVGDAIAAAVKVGYRHIDCAQIYG---NEKGIGSALKKLFDDGVVKR 73 (137)
Q Consensus 5 ~~~~~l~-~g~~v~~lglGt~~~~~-------~~~~~~l~~a~~~G~~~~Dta~~Yg---~e~~~G~~l~~~~~~~~~~r 73 (137)
|++++|+ +|++||+||||||.+.. +++.+++++|+++|||+||||+.|| +|++||++|+.+ + .|
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~--~R 75 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G--RR 75 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C--CC
Confidence 6788996 79999999999997742 2566799999999999999999999 799999999976 3 38
Q ss_pred CcEEEEeccCC----------CCCCchhHHHHHHHHHHHcCCCceeEEEEeecCCCCchH----HHHHHHHHHhhhc
Q 032577 74 EDLWITSKLWC----------NNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQHLF----IFHLLIEVSLRNC 136 (137)
Q Consensus 74 ~~~~i~tK~~~----------~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~~~----~~~~l~~~~~~~~ 136 (137)
++++|+||+.. ...+++.|+++++.||+|||+||||||++||||+..|.+ +++.|++.|+.++
T Consensus 76 d~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~ 152 (316)
T COG0667 76 DKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRY 152 (316)
T ss_pred CeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 99999999921 235899999999999999999999999999999988763 3555555666554
No 4
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=99.97 E-value=5.4e-31 Score=198.53 Aligned_cols=118 Identities=38% Similarity=0.633 Sum_probs=102.5
Q ss_pred ccccceeecccCChhHHHHHHHHHHHcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHH
Q 032577 15 KIPSLGLGTWAAAPDVVGDAIAAAVKVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPK 94 (137)
Q Consensus 15 ~v~~lglGt~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~ 94 (137)
+||.+|||||+++.+++.++++.|++.|||+||||+.||+|..+|++++.. + ++|+++||+||+++...+++.+++
T Consensus 2 ~vs~lglGt~~~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~v~i~TK~~~~~~~~~~~~~ 77 (267)
T PRK11172 2 SIPAFGLGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---G-VPRDELFITTKIWIDNLAKDKLIP 77 (267)
T ss_pred CCCCEeeEccccChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---C-CChhHeEEEEEeCCCCCCHHHHHH
Confidence 589999999999888999999999999999999999999999999999864 4 479999999999876778899999
Q ss_pred HHHHHHHHcCCCceeEEEEeecCCC--Cc-hHHHHHHHH---HHhhhc
Q 032577 95 ALDRTLQDLQLDYVDLYLVCLYDTI--QH-LFIFHLLIE---VSLRNC 136 (137)
Q Consensus 95 ~~~~sL~~L~~~~lDl~~lH~p~~~--~~-~~~~~~l~~---~~~~~~ 136 (137)
++++||++||+||||+|++|||++. .+ .+.|++|.+ .|+.++
T Consensus 78 ~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~ 125 (267)
T PRK11172 78 SLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTRE 125 (267)
T ss_pred HHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Confidence 9999999999999999999999764 33 355666654 455443
No 5
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=99.97 E-value=8.7e-31 Score=198.20 Aligned_cols=120 Identities=45% Similarity=0.723 Sum_probs=105.7
Q ss_pred ceeeCCCCCccccceeecccCChhHHHHHHHHHHHcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEeccCCC
Q 032577 6 RFFKLNAGAKIPSLGLGTWAAAPDVVGDAIAAAVKVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKLWCN 85 (137)
Q Consensus 6 ~~~~l~~g~~v~~lglGt~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~ 85 (137)
+++.|++|..||.||||||+++.+++.++++.|+++|+|+||||+.||+|+.+|++++.. + ++|++++|+||+++.
T Consensus 5 ~~~~l~~g~~v~~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~~~i~tK~~~~ 80 (275)
T PRK11565 5 TVIKLQDGNVMPQLGLGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---S-VAREELFITTKLWND 80 (275)
T ss_pred ceEEcCCCCccCCcceECccCCHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---C-CCHHHEEEEEEecCc
Confidence 446788999999999999999889999999999999999999999999999999999864 4 469999999999753
Q ss_pred CCCchhHHHHHHHHHHHcCCCceeEEEEeecCCCCc--hHHHHHHHHH
Q 032577 86 NHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQH--LFIFHLLIEV 131 (137)
Q Consensus 86 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~--~~~~~~l~~~ 131 (137)
+++.+++++++||++||+||||+|++|||++..+ .++|++|.++
T Consensus 81 --~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l 126 (275)
T PRK11565 81 --DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIEL 126 (275)
T ss_pred --chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHH
Confidence 5679999999999999999999999999987542 3667776654
No 6
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=99.97 E-value=1.1e-30 Score=200.91 Aligned_cols=126 Identities=25% Similarity=0.431 Sum_probs=104.8
Q ss_pred eeeCC-CCCccccceeeccc-----CChhHHHHHHHHHHHcCCCeeeCccccc---CHHHHHHHHHhhhhCCCCCCCcEE
Q 032577 7 FFKLN-AGAKIPSLGLGTWA-----AAPDVVGDAIAAAVKVGYRHIDCAQIYG---NEKGIGSALKKLFDDGVVKREDLW 77 (137)
Q Consensus 7 ~~~l~-~g~~v~~lglGt~~-----~~~~~~~~~l~~a~~~G~~~~Dta~~Yg---~e~~~G~~l~~~~~~~~~~r~~~~ 77 (137)
+++|+ +|++||+||||||+ .+.+++.++++.|+++|||+||||+.|| +|+.+|++|+.. + .+|++++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~-~~R~~~~ 76 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---G-WRRSSYV 76 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---C-CCcccEE
Confidence 35675 89999999999996 3567899999999999999999999998 799999999853 3 3699999
Q ss_pred EEeccC-C------CCCCchhHHHHHHHHHHHcCCCceeEEEEeecCCCCch-HHHHHHHH---HHhhhc
Q 032577 78 ITSKLW-C------NNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQHL-FIFHLLIE---VSLRNC 136 (137)
Q Consensus 78 i~tK~~-~------~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~~-~~~~~l~~---~~~~~~ 136 (137)
|+||+. + ...+++.+++++++||++||+||||+|++|||++..|. ++|++|.+ .|+.++
T Consensus 77 iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~ 146 (317)
T TIGR01293 77 ITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMY 146 (317)
T ss_pred EEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 999973 2 13468999999999999999999999999999987665 44555554 455443
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=99.97 E-value=5.4e-30 Score=199.22 Aligned_cols=109 Identities=32% Similarity=0.455 Sum_probs=97.0
Q ss_pred CceeeCC-CCCccccceeecccC----ChhHHHHHHHHHHHcCCCeeeCccccc----------CHHHHHHHHHhhhhCC
Q 032577 5 FRFFKLN-AGAKIPSLGLGTWAA----APDVVGDAIAAAVKVGYRHIDCAQIYG----------NEKGIGSALKKLFDDG 69 (137)
Q Consensus 5 ~~~~~l~-~g~~v~~lglGt~~~----~~~~~~~~l~~a~~~G~~~~Dta~~Yg----------~e~~~G~~l~~~~~~~ 69 (137)
|++++|+ +|+.||+||||||++ +.+++.++++.|++.|||+||||+.|| +|..+|++|++. +
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---~ 77 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---G 77 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---C
Confidence 6788995 899999999999976 457899999999999999999999996 899999999864 3
Q ss_pred CCCCCcEEEEeccCCC------------CCCchhHHHHHHHHHHHcCCCceeEEEEeecCC
Q 032577 70 VVKREDLWITSKLWCN------------NHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDT 118 (137)
Q Consensus 70 ~~~r~~~~i~tK~~~~------------~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~ 118 (137)
.|++++|+||++.. ..+++.+++++++||++||+||||+|++|||++
T Consensus 78 --~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~ 136 (346)
T PRK10625 78 --SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQR 136 (346)
T ss_pred --CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCc
Confidence 59999999998421 356889999999999999999999999999975
No 8
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=99.97 E-value=5.7e-30 Score=199.23 Aligned_cols=129 Identities=23% Similarity=0.354 Sum_probs=106.4
Q ss_pred CCceeeCC-CCCccccceeeccc-C----ChhHHHHHHHHHHHcCCCeeeCccccc-----CHHHHHHHHHhhhhCCCCC
Q 032577 4 GFRFFKLN-AGAKIPSLGLGTWA-A----APDVVGDAIAAAVKVGYRHIDCAQIYG-----NEKGIGSALKKLFDDGVVK 72 (137)
Q Consensus 4 ~~~~~~l~-~g~~v~~lglGt~~-~----~~~~~~~~l~~a~~~G~~~~Dta~~Yg-----~e~~~G~~l~~~~~~~~~~ 72 (137)
.|++++|+ +|++||+||||||+ + +.+++.++++.|+++|||+||||+.|| +|+.+|++|++. ....
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~---~~~~ 88 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLRED---FAAY 88 (346)
T ss_pred CcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhc---ccCC
Confidence 48999995 89999999999996 3 345689999999999999999999998 599999999853 1125
Q ss_pred CCcEEEEeccC----CC----CCCchhHHHHHHHHHHHcCCCceeEEEEeecCCCCch-HHHHHHH---HHHhhh
Q 032577 73 REDLWITSKLW----CN----NHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQHL-FIFHLLI---EVSLRN 135 (137)
Q Consensus 73 r~~~~i~tK~~----~~----~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~~-~~~~~l~---~~~~~~ 135 (137)
|++++|+||+. +. ..+++.+++++++||++||+||||+|++|||++..|. ++|++|. +.|+.+
T Consensus 89 Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr 163 (346)
T PRK09912 89 RDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKAL 163 (346)
T ss_pred CCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCee
Confidence 99999999962 22 2468899999999999999999999999999987765 4455554 445544
No 9
>PLN02587 L-galactose dehydrogenase
Probab=99.97 E-value=4.3e-30 Score=197.46 Aligned_cols=126 Identities=29% Similarity=0.387 Sum_probs=103.6
Q ss_pred eeeCC-CCCccccceeecccC-------ChhHHHHHHHHHHHcCCCeeeCccccc---CHHHHHHHHHhhhhCCCCCCCc
Q 032577 7 FFKLN-AGAKIPSLGLGTWAA-------APDVVGDAIAAAVKVGYRHIDCAQIYG---NEKGIGSALKKLFDDGVVKRED 75 (137)
Q Consensus 7 ~~~l~-~g~~v~~lglGt~~~-------~~~~~~~~l~~a~~~G~~~~Dta~~Yg---~e~~~G~~l~~~~~~~~~~r~~ 75 (137)
+++|+ +|++||.||||||++ +.+++.++++.|++.|+|+||||+.|| +|..+|++|++. + .+|++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~-~~R~~ 76 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---G-IPREK 76 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---C-CCcce
Confidence 46674 899999999999864 467899999999999999999999997 599999999864 3 46999
Q ss_pred EEEEeccCC----CCCCchhHHHHHHHHHHHcCCCceeEEEEeecCCCC---ch-HHHHHHH---HHHhhhc
Q 032577 76 LWITSKLWC----NNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQ---HL-FIFHLLI---EVSLRNC 136 (137)
Q Consensus 76 ~~i~tK~~~----~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~---~~-~~~~~l~---~~~~~~~ 136 (137)
++|+||+++ ...+++.+++++++||++||+||||+|++|||+... +. ++|++|. +.|+.++
T Consensus 77 v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~ 148 (314)
T PLN02587 77 YVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRF 148 (314)
T ss_pred EEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEE
Confidence 999999863 245789999999999999999999999999997432 22 4455555 4465543
No 10
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=99.96 E-value=2e-29 Score=193.26 Aligned_cols=128 Identities=25% Similarity=0.371 Sum_probs=111.0
Q ss_pred CceeeCC-CCCccccceeecc-------cCChhHHHHHHHHHHHcCCCeeeCccccc---CHHHHHHHHHhhhhCCCCCC
Q 032577 5 FRFFKLN-AGAKIPSLGLGTW-------AAAPDVVGDAIAAAVKVGYRHIDCAQIYG---NEKGIGSALKKLFDDGVVKR 73 (137)
Q Consensus 5 ~~~~~l~-~g~~v~~lglGt~-------~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg---~e~~~G~~l~~~~~~~~~~r 73 (137)
|++++++ +|++||++|||+| +.+++++.++++.|+++|+|+||||+.|| ||.++|++++++ + ..|
T Consensus 12 ~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~---~-~~R 87 (336)
T KOG1575|consen 12 MLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR---G-WRR 87 (336)
T ss_pred ceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc---C-CcC
Confidence 7888895 6799999999984 23678999999999999999999999999 799999999987 4 579
Q ss_pred CcEEEEeccC-------CCCCCchhHHHHHHHHHHHcCCCceeEEEEeecCCCCchH----HHHHHHHHHhhhc
Q 032577 74 EDLWITSKLW-------CNNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQHLF----IFHLLIEVSLRNC 136 (137)
Q Consensus 74 ~~~~i~tK~~-------~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~~~----~~~~l~~~~~~~~ 136 (137)
++++|+||+. +...++..+...++.|+++||++||||||+||||+..|.+ +++.|++.|..+|
T Consensus 88 ~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~y 161 (336)
T KOG1575|consen 88 DKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRY 161 (336)
T ss_pred CcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEE
Confidence 9999999983 2345678899999999999999999999999999999974 3666667777665
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=99.96 E-value=5.7e-29 Score=188.00 Aligned_cols=120 Identities=35% Similarity=0.586 Sum_probs=105.5
Q ss_pred eeeCC-CCCccccceeecccCC-----hhHHHHHHHHHHHcCCCeeeCccccc---CHHHHHHHHHhhhhCCCCCCCcEE
Q 032577 7 FFKLN-AGAKIPSLGLGTWAAA-----PDVVGDAIAAAVKVGYRHIDCAQIYG---NEKGIGSALKKLFDDGVVKREDLW 77 (137)
Q Consensus 7 ~~~l~-~g~~v~~lglGt~~~~-----~~~~~~~l~~a~~~G~~~~Dta~~Yg---~e~~~G~~l~~~~~~~~~~r~~~~ 77 (137)
+++|+ +|..||++|||||.+. .+++.++++.|++.|||+||||+.|| +|+.+|+++++. + .|++++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~--~R~~~~ 75 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G--PREEVF 75 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C--CcCcEE
Confidence 36776 8999999999999874 37899999999999999999999999 899999999975 2 599999
Q ss_pred EEeccCCCC-----CCchhHHHHHHHHHHHcCCCceeEEEEeecCCCCc--hHHHHHHHHH
Q 032577 78 ITSKLWCNN-----HLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQH--LFIFHLLIEV 131 (137)
Q Consensus 78 i~tK~~~~~-----~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~--~~~~~~l~~~ 131 (137)
|+||+++.. .+++.+++++++||++||++|||+|++|||+...+ .+.|++|+++
T Consensus 76 i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l 136 (285)
T cd06660 76 IATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEEL 136 (285)
T ss_pred EEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHH
Confidence 999997654 57899999999999999999999999999988654 5667777654
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=99.95 E-value=3.6e-28 Score=185.06 Aligned_cols=123 Identities=28% Similarity=0.374 Sum_probs=98.6
Q ss_pred CCCCCce--eeCCCCCccccceeecccCC----------hhHHHHHHHHHHHcCCCeeeCccccc---CHHHHHHHHHhh
Q 032577 1 MEEGFRF--FKLNAGAKIPSLGLGTWAAA----------PDVVGDAIAAAVKVGYRHIDCAQIYG---NEKGIGSALKKL 65 (137)
Q Consensus 1 m~~~~~~--~~l~~g~~v~~lglGt~~~~----------~~~~~~~l~~a~~~G~~~~Dta~~Yg---~e~~~G~~l~~~ 65 (137)
||+.|.. +.|+ |.+||+||||||+++ .+++.++++.|+++|||+||||..|| +|+.+|++++.
T Consensus 1 ~~~~~~~~~~~l~-g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~- 78 (290)
T PRK10376 1 MSTIMSSGTFTLG-GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP- 78 (290)
T ss_pred CcccccCCceecC-CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-
Confidence 6666543 4555 999999999999763 36789999999999999999999998 48899999863
Q ss_pred hhCCCCCCCcEEEEeccC---------CCCCCchhHHHHHHHHHHHcCCCceeEEEEeecC------CCCchHHHHHHHH
Q 032577 66 FDDGVVKREDLWITSKLW---------CNNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYD------TIQHLFIFHLLIE 130 (137)
Q Consensus 66 ~~~~~~~r~~~~i~tK~~---------~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~------~~~~~~~~~~l~~ 130 (137)
.|++++|+||+. +...+++.+++++++||++||+||||+|++||++ .....+.|++|.+
T Consensus 79 ------~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~ 152 (290)
T PRK10376 79 ------YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAE 152 (290)
T ss_pred ------CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHH
Confidence 489999999972 2346788999999999999999999999988852 2122345666554
Q ss_pred H
Q 032577 131 V 131 (137)
Q Consensus 131 ~ 131 (137)
+
T Consensus 153 l 153 (290)
T PRK10376 153 L 153 (290)
T ss_pred H
Confidence 4
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.94 E-value=6.3e-27 Score=178.55 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=93.4
Q ss_pred CCccccceeecccCC--------------hhHHHHHHHHHHHcCCCeeeCccccc-CHHHHHHHHHhhhhCCCCCCCcEE
Q 032577 13 GAKIPSLGLGTWAAA--------------PDVVGDAIAAAVKVGYRHIDCAQIYG-NEKGIGSALKKLFDDGVVKREDLW 77 (137)
Q Consensus 13 g~~v~~lglGt~~~~--------------~~~~~~~l~~a~~~G~~~~Dta~~Yg-~e~~~G~~l~~~~~~~~~~r~~~~ 77 (137)
+.+||+||||||+++ .+++.++++.|++.|||+||||+.|| +|..+|++|+.. .+.+++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~------~~~~~~ 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP------VPFRVT 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC------CceEee
Confidence 467899999998663 46799999999999999999999999 799999999731 345788
Q ss_pred EEeccCCCCCCchhHHHHHHHHHHHcCCCceeEEEEeecCCC-Cc--hHHHHHHHH---HHhhhc
Q 032577 78 ITSKLWCNNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTI-QH--LFIFHLLIE---VSLRNC 136 (137)
Q Consensus 78 i~tK~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~-~~--~~~~~~l~~---~~~~~~ 136 (137)
++||.. ..+++.+++++++||++||+||||+|++|||++. .+ .+.|++|.+ .|+.++
T Consensus 76 i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~ 138 (292)
T PRK14863 76 LSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAK 138 (292)
T ss_pred cccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcce
Confidence 899852 3568899999999999999999999999999763 33 234555554 565543
No 14
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.93 E-value=3.7e-26 Score=172.48 Aligned_cols=110 Identities=32% Similarity=0.562 Sum_probs=94.3
Q ss_pred cceeecccC-----ChhHHHHHHHHHHHcCCCeeeCccccc---CHHHHHHHHHhhhhCCCCCCCcEEEEecc-----CC
Q 032577 18 SLGLGTWAA-----APDVVGDAIAAAVKVGYRHIDCAQIYG---NEKGIGSALKKLFDDGVVKREDLWITSKL-----WC 84 (137)
Q Consensus 18 ~lglGt~~~-----~~~~~~~~l~~a~~~G~~~~Dta~~Yg---~e~~~G~~l~~~~~~~~~~r~~~~i~tK~-----~~ 84 (137)
+||||||++ +.+++.++++.|++.|||+||||+.|| +|+.+|+++++. + .+|++++|+||+ +.
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~-~~r~~~~i~tK~~~~~~~~ 76 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---R-VPRDDIFISTKVYGDGKPE 76 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---S-STGGGSEEEEEEESSSSTG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---c-ccccccccccccccccccc
Confidence 589999954 678999999999999999999999993 799999999982 2 589999999999 55
Q ss_pred CCCCchhHHHHHHHHHHHcCCCceeEEEEeecCCCCc--hHHHHHHHHH
Q 032577 85 NNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQH--LFIFHLLIEV 131 (137)
Q Consensus 85 ~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~--~~~~~~l~~~ 131 (137)
...+++.+++++++||++||+||||+|++|||+...+ .+.|++|+++
T Consensus 77 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l 125 (283)
T PF00248_consen 77 PDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEEL 125 (283)
T ss_dssp GGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhccccccccccccccchhhhhhhhc
Confidence 6678999999999999999999999999999998776 3556666554
No 15
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.92 E-value=7.8e-25 Score=168.14 Aligned_cols=118 Identities=27% Similarity=0.401 Sum_probs=102.5
Q ss_pred CceeeCC-CCCccccceeecccC--------ChhHHHHHHHHHHHcCCCeeeCcccc--c-CHHHHHHHHHhhhhCCCCC
Q 032577 5 FRFFKLN-AGAKIPSLGLGTWAA--------APDVVGDAIAAAVKVGYRHIDCAQIY--G-NEKGIGSALKKLFDDGVVK 72 (137)
Q Consensus 5 ~~~~~l~-~g~~v~~lglGt~~~--------~~~~~~~~l~~a~~~G~~~~Dta~~Y--g-~e~~~G~~l~~~~~~~~~~ 72 (137)
|.+|+++ ||.++|.+|||+|++ +.+.+.+.|+.|++.|||+||||..| | +|..+|++|++. .
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------~ 74 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------Y 74 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc------c
Confidence 6788895 999999999999966 45679999999999999999999999 6 899999999975 6
Q ss_pred CCcEEEEeccCCCC-CCchhHHHHHHHHHHHcCCCceeEEEEeecCCCCchHHHHHHHHHH
Q 032577 73 REDLWITSKLWCNN-HLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQHLFIFHLLIEVS 132 (137)
Q Consensus 73 r~~~~i~tK~~~~~-~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~~~~~~~l~~~~ 132 (137)
|+++.++||+..+. .+++++++-++++|++||+||+|+|+||..+. +.|+.++++|
T Consensus 75 Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~----e~~~k~~~~g 131 (391)
T COG1453 75 REKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT----ETWEKIERLG 131 (391)
T ss_pred cceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccH----HHHHHHHccC
Confidence 99999999996332 47899999999999999999999999999754 5555555554
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.91 E-value=4.2e-24 Score=158.49 Aligned_cols=110 Identities=31% Similarity=0.478 Sum_probs=95.4
Q ss_pred CCceeeC-CCCCccccceeecccC-------ChhHHHHHHHHHHHcCCCeeeCccccc---CHHHHHHHHHhhhhCCCCC
Q 032577 4 GFRFFKL-NAGAKIPSLGLGTWAA-------APDVVGDAIAAAVKVGYRHIDCAQIYG---NEKGIGSALKKLFDDGVVK 72 (137)
Q Consensus 4 ~~~~~~l-~~g~~v~~lglGt~~~-------~~~~~~~~l~~a~~~G~~~~Dta~~Yg---~e~~~G~~l~~~~~~~~~~ 72 (137)
.|.++.+ +||++||++|||...+ +.++....+..|+..|||+|||++.|| +|..+|.++++ +|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~------vP 94 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD------VP 94 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh------CC
Confidence 3788899 4999999999998633 455666666779999999999999999 79999999987 59
Q ss_pred CCcEEEEeccCC--------CCCCchhHHHHHHHHHHHcCCCceeEEEEeecCCC
Q 032577 73 REDLWITSKLWC--------NNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTI 119 (137)
Q Consensus 73 r~~~~i~tK~~~--------~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~ 119 (137)
|+..+|+||+.. .+++++.+++++++||++|++||||++++|..+..
T Consensus 95 R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefa 149 (342)
T KOG1576|consen 95 REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFA 149 (342)
T ss_pred hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccc
Confidence 999999999932 45788999999999999999999999999987765
No 17
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.91 E-value=9.5e-25 Score=160.57 Aligned_cols=129 Identities=28% Similarity=0.366 Sum_probs=110.9
Q ss_pred CceeeCC-CCCccccceeecccC-----ChhHHHHHHHHHHHcCCCeeeCccccc---CHHHHHHHHHhhhhCCCCCCCc
Q 032577 5 FRFFKLN-AGAKIPSLGLGTWAA-----APDVVGDAIAAAVKVGYRHIDCAQIYG---NEKGIGSALKKLFDDGVVKRED 75 (137)
Q Consensus 5 ~~~~~l~-~g~~v~~lglGt~~~-----~~~~~~~~l~~a~~~G~~~~Dta~~Yg---~e~~~G~~l~~~~~~~~~~r~~ 75 (137)
|++++++ .|+++|++.+|.|++ ...+....++.|++.||++||-|++|| .|.++|.+|+-. + ..|++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~---p-~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA---P-GLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC---h-hhhhh
Confidence 6788896 899999999999976 456899999999999999999999999 599999999864 2 46999
Q ss_pred EEEEeccC------------CCCCCchhHHHHHHHHHHHcCCCceeEEEEeecCCCCch----HHHHHHHHHHhhhcC
Q 032577 76 LWITSKLW------------CNNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQHL----FIFHLLIEVSLRNCF 137 (137)
Q Consensus 76 ~~i~tK~~------------~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~~----~~~~~l~~~~~~~~~ 137 (137)
+.|.||+. ..+.+.++|..++++||++|++||+|++++|+||+.... +++..|...|..+.|
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~f 154 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHF 154 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeee
Confidence 99999982 245688999999999999999999999999999997643 557777777776654
No 18
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.57 E-value=1.2 Score=35.82 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHHHHHHHHHHc--CC
Q 032577 28 PDVVGDAIAAAVKVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPKALDRTLQDL--QL 105 (137)
Q Consensus 28 ~~~~~~~l~~a~~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L--~~ 105 (137)
......++++|+++|++++|||........+....+ +..+-+..-+ ..+|.-..--.....+.+ .+
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~---------~Agit~v~~~---G~dPGi~nv~a~~a~~~~~~~i 145 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK---------KAGITAVLGC---GFDPGITNVLAAYAAKELFDEI 145 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH---------HcCeEEEccc---CcCcchHHHHHHHHHHHhhccc
Confidence 345668999999999999999987755333333222 2233333332 223333333333333344 48
Q ss_pred CceeEEEEeecCCC
Q 032577 106 DYVDLYLVCLYDTI 119 (137)
Q Consensus 106 ~~lDl~~lH~p~~~ 119 (137)
+++|+|..+.|++.
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 99999999999876
No 19
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=77.81 E-value=19 Score=24.33 Aligned_cols=105 Identities=19% Similarity=0.120 Sum_probs=58.6
Q ss_pred ccceeecccCC-hhHHHHHHHHHH-HcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHH
Q 032577 17 PSLGLGTWAAA-PDVVGDAIAAAV-KVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPK 94 (137)
Q Consensus 17 ~~lglGt~~~~-~~~~~~~l~~a~-~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~ 94 (137)
+++-+|+...+ .+....++..++ .+|+..+|+...-..|..+-.+.+. ..+++..+-.. .+....-+
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~--------~adii~iSsl~---~~~~~~~~ 71 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEA--------DVHVVGVSSLA---GGHLTLVP 71 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--------CCCEEEEcCch---hhhHHHHH
Confidence 34555655443 244556666665 6799999988665457666666552 33444433321 11223344
Q ss_pred HHHHHHHHcCCCceeE-EEEeecCCCCchHHHHHHHHHHhhhcC
Q 032577 95 ALDRTLQDLQLDYVDL-YLVCLYDTIQHLFIFHLLIEVSLRNCF 137 (137)
Q Consensus 95 ~~~~sL~~L~~~~lDl-~~lH~p~~~~~~~~~~~l~~~~~~~~~ 137 (137)
.+-+.|+..+.+ |+ +++. ...|.+.+..+.++|+.+||
T Consensus 72 ~~~~~L~~~g~~--~i~vivG---G~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 72 ALRKELDKLGRP--DILVVVG---GVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHhcCCC--CCEEEEe---CCCChHhHHHHHHCCCCEEE
Confidence 455556666654 33 3332 23355667788888887775
No 20
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=65.31 E-value=61 Score=25.46 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=28.0
Q ss_pred eeCCCCCccccceeecccCChhHHHHHHHHHHHcCCCeeeCc
Q 032577 8 FKLNAGAKIPSLGLGTWAAAPDVVGDAIAAAVKVGYRHIDCA 49 (137)
Q Consensus 8 ~~l~~g~~v~~lglGt~~~~~~~~~~~l~~a~~~G~~~~Dta 49 (137)
.+|+.|...+. |+++.++..++++...++|+..|+.+
T Consensus 9 ~TLRDG~q~~~-----~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 9 VTLRDGMHAVR-----HQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCCCcCcCCC-----CccCHHHHHHHHHHHHHcCCCEEEee
Confidence 34566665443 45667999999999999999999984
No 21
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=65.24 E-value=40 Score=22.81 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=57.0
Q ss_pred ccc---CHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHHHHHHHHHHc--CCCceeEE--EEeecCCCCch-
Q 032577 51 IYG---NEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPKALDRTLQDL--QLDYVDLY--LVCLYDTIQHL- 122 (137)
Q Consensus 51 ~Yg---~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L--~~~~lDl~--~lH~p~~~~~~- 122 (137)
.|| ..+.|-++++.++..+ .+++.++++-..|+.. +...+-+-+.+.|=+- +-+++-.| ..|.|....-.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~-~p~KpLVlSfHG~tGt-GKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~ 104 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANP-NPRKPLVLSFHGWTGT-GKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDE 104 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCC-CCCCCEEEEeecCCCC-cHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHH
Confidence 677 4567777888887766 5899999998887653 4567777788777444 45566665 46888664322
Q ss_pred --HHHHHHHHHHhhhc
Q 032577 123 --FIFHLLIEVSLRNC 136 (137)
Q Consensus 123 --~~~~~l~~~~~~~~ 136 (137)
+.++..+.-.+.+|
T Consensus 105 Yk~~L~~~I~~~v~~C 120 (127)
T PF06309_consen 105 YKEQLKSWIRGNVSRC 120 (127)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 44566666667776
No 22
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=58.35 E-value=72 Score=24.06 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHcCCCeeeCccccc--CHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCC------CCchhHHHHHHHH
Q 032577 28 PDVVGDAIAAAVKVGYRHIDCAQIYG--NEKGIGSALKKLFDDGVVKREDLWITSKLWCNN------HLPEDVPKALDRT 99 (137)
Q Consensus 28 ~~~~~~~l~~a~~~G~~~~Dta~~Yg--~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~------~~~~~i~~~~~~s 99 (137)
++...+.++.+-+.|++.++-+...- +....-++++.. ....+.+.+-+...+ .+++...+.+++.
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH------HHCCCEEeecccCCCchhcccCCHHHHHHHHHHH
Confidence 44567788888889999998887765 556666667664 344466666653221 2356677777777
Q ss_pred HHHcCCCceeEEEEee
Q 032577 100 LQDLQLDYVDLYLVCL 115 (137)
Q Consensus 100 L~~L~~~~lDl~~lH~ 115 (137)
|+. | .|.+++..
T Consensus 157 LeA-G---A~~ViiEa 168 (244)
T PF02679_consen 157 LEA-G---ADKVIIEA 168 (244)
T ss_dssp HHH-T---ECEEEE--
T ss_pred HHC-C---CCEEEEee
Confidence 764 3 45555554
No 23
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=52.18 E-value=1e+02 Score=23.42 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=54.5
Q ss_pred eeecccCChhH-HHHHHHHHHHcCCCeeeCccccc----C---HHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchh
Q 032577 20 GLGTWAAAPDV-VGDAIAAAVKVGYRHIDCAQIYG----N---EKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPED 91 (137)
Q Consensus 20 glGt~~~~~~~-~~~~l~~a~~~G~~~~Dta~~Yg----~---e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~ 91 (137)
-+=|..+++++ ..++.+.|+++|..|+=|+--|+ + -+++-+.+++. + ...+ +.-|....-.+.+.
T Consensus 137 IlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~--~~~~--vgIKAsGGIrt~~~ 209 (257)
T PRK05283 137 IIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---G--VAKT--VGFKPAGGVRTAED 209 (257)
T ss_pred EEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---c--cCCC--eeEEccCCCCCHHH
Confidence 33344456664 88999999999999999999886 2 23333333322 1 0112 44565444466778
Q ss_pred HHHHHHHHHHHcCCCcee
Q 032577 92 VPKALDRTLQDLQLDYVD 109 (137)
Q Consensus 92 i~~~~~~sL~~L~~~~lD 109 (137)
..+-++.--+.||.++++
T Consensus 210 A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 210 AAQYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHHHhChhhcC
Confidence 888888888888887775
No 24
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=51.42 E-value=69 Score=21.17 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=43.7
Q ss_pred CCcEEEEeccCCCCCCchhHHHHHHHHHHHcCC----C--ceeEEEEeecCCCC-ch-HHHHHHHHHHhhh
Q 032577 73 REDLWITSKLWCNNHLPEDVPKALDRTLQDLQL----D--YVDLYLVCLYDTIQ-HL-FIFHLLIEVSLRN 135 (137)
Q Consensus 73 r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L~~----~--~lDl~~lH~p~~~~-~~-~~~~~l~~~~~~~ 135 (137)
|=.+.|+.|+......+.-+++.++++.+.... . ..|++++-.+.... +. +.-+.+..+-+++
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~~~~ 117 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKIILRN 117 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHHHhc
Confidence 556778888665556788899999999987753 2 58999999887543 23 3345555555554
No 25
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=51.14 E-value=24 Score=22.99 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHHcCCCeeeCccccc
Q 032577 27 APDVVGDAIAAAVKVGYRHIDCAQIYG 53 (137)
Q Consensus 27 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg 53 (137)
+.+.+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 567788899999999999999999984
No 26
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=50.69 E-value=1e+02 Score=22.82 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=24.6
Q ss_pred cceeecccCChhHHHHHHHHHHHcCCCeeeCc
Q 032577 18 SLGLGTWAAAPDVVGDAIAAAVKVGYRHIDCA 49 (137)
Q Consensus 18 ~lglGt~~~~~~~~~~~l~~a~~~G~~~~Dta 49 (137)
+||+-|+.+......+.++.+-+.|+..++..
T Consensus 2 ~lg~~t~~~~~~~l~~~l~~~~~~G~~~vEl~ 33 (275)
T PRK09856 2 KTGMFTCGHQRLPIEHAFRDASELGYDGIEIW 33 (275)
T ss_pred ceeeeehhheeCCHHHHHHHHHHcCCCEEEEc
Confidence 45666665555568889999999999999864
No 27
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=49.96 E-value=6.6 Score=23.23 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=33.8
Q ss_pred CChhHHHHHHHHHHHcCCCeeeCccccc-CHHHHHHHHHhh
Q 032577 26 AAPDVVGDAIAAAVKVGYRHIDCAQIYG-NEKGIGSALKKL 65 (137)
Q Consensus 26 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg-~e~~~G~~l~~~ 65 (137)
++++.-.++|..++..|.+.-+.|..|| +...+..|++++
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~ 47 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQY 47 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHH
Confidence 3567778899999999999999999999 899999999987
No 28
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=44.35 E-value=98 Score=20.88 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=56.7
Q ss_pred eecccCC-hhHHHHHHHHHH-HcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHHHHHH
Q 032577 21 LGTWAAA-PDVVGDAIAAAV-KVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPKALDR 98 (137)
Q Consensus 21 lGt~~~~-~~~~~~~l~~a~-~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~~~~~ 98 (137)
+||...+ .+-...++..++ ++|+..+|....-..|+++-.+.+. +-+++-.|-+... +.. ..+.+.+
T Consensus 4 igtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~--------~adiVglS~L~t~--~~~-~~~~~~~ 72 (128)
T cd02072 4 LGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET--------DADAILVSSLYGH--GEI-DCKGLRE 72 (128)
T ss_pred EEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--------CCCEEEEeccccC--CHH-HHHHHHH
Confidence 4444332 234556666665 6799999998777678888877663 3445443333211 222 3334444
Q ss_pred HHHHcCCCceeEEEEeecCCCCchHHH----HHHHHHHhhhcC
Q 032577 99 TLQDLQLDYVDLYLVCLYDTIQHLFIF----HLLIEVSLRNCF 137 (137)
Q Consensus 99 sL~~L~~~~lDl~~lH~p~~~~~~~~~----~~l~~~~~~~~~ 137 (137)
.|++-|+..+= +++--. ...|.+.| +.|.++|..+||
T Consensus 73 ~l~~~gl~~v~-vivGG~-~~i~~~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 73 KCDEAGLKDIL-LYVGGN-LVVGKQDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred HHHHCCCCCCe-EEEECC-CCCChhhhHHHHHHHHHcCCCEEE
Confidence 56666764321 222221 11233334 558888888776
No 29
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.25 E-value=83 Score=27.06 Aligned_cols=58 Identities=21% Similarity=0.156 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHHHHHHHHHHc-CCCceeEEEEeecCCCCchH
Q 032577 54 NEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPKALDRTLQDL-QLDYVDLYLVCLYDTIQHLF 123 (137)
Q Consensus 54 ~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L-~~~~lDl~~lH~p~~~~~~~ 123 (137)
+-+..+++|- |+.+|+.+-|.--. +.+ .+-+-.||+|| |+.|+.-+.+-|..+..|.+
T Consensus 634 sGkEF~~aLG-----GN~pREQFTvVmLT----YER---e~VLm~sLeRL~gLPYLnKvvVVWNspk~P~d 692 (907)
T KOG2264|consen 634 SGKEFSKALG-----GNRPREQFTVVMLT----YER---EAVLMGSLERLHGLPYLNKVVVVWNSPKDPPD 692 (907)
T ss_pred chHHHHHHhc-----CCCccceEEEEEEE----ehH---HHHHHHHHHHhhCCcccceEEEEeCCCCCChh
Confidence 6777888876 44689887766443 222 34567889898 89999999998876655443
No 30
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=44.19 E-value=23 Score=26.81 Aligned_cols=40 Identities=30% Similarity=0.394 Sum_probs=27.7
Q ss_pred CCCCccccceeecccC---------ChhHHH----HHHHHHHHcCCCeeeCcc
Q 032577 11 NAGAKIPSLGLGTWAA---------APDVVG----DAIAAAVKVGYRHIDCAQ 50 (137)
Q Consensus 11 ~~g~~v~~lglGt~~~---------~~~~~~----~~l~~a~~~G~~~~Dta~ 50 (137)
.+|+.+|.++|...+. ..+++. +++..|.+.|||.|--|.
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAG 117 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAG 117 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeecc
Confidence 4789999998876532 123444 555566789999998875
No 31
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=42.10 E-value=1.1e+02 Score=24.88 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCC----------------CCchhHHHHHHHHHHHc-CCCceeEEEEe--
Q 032577 54 NEKGIGSALKKLFDDGVVKREDLWITSKLWCNN----------------HLPEDVPKALDRTLQDL-QLDYVDLYLVC-- 114 (137)
Q Consensus 54 ~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~----------------~~~~~i~~~~~~sL~~L-~~~~lDl~~lH-- 114 (137)
.-++-+++++.. .++..++|+.-.|+.. ++.+.-.-.++..|..| +...=|++++|
T Consensus 106 AL~~~A~fl~~~-----~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~C 180 (396)
T COG1448 106 ALRVAADFLARF-----FPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGC 180 (396)
T ss_pred HHHHHHHHHHHh-----CCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecC
Confidence 456677777766 3667788888776521 12222223444555444 23456788887
Q ss_pred --ecCCCC-chHHHHHHHHHHhh
Q 032577 115 --LYDTIQ-HLFIFHLLIEVSLR 134 (137)
Q Consensus 115 --~p~~~~-~~~~~~~l~~~~~~ 134 (137)
+|.... ..+.|..+.++...
T Consensus 181 cHNPTG~D~t~~qW~~l~~~~~~ 203 (396)
T COG1448 181 CHNPTGIDPTEEQWQELADLIKE 203 (396)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH
Confidence 565544 45789999887543
No 32
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=40.85 E-value=24 Score=23.81 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCCCeeeC
Q 032577 32 GDAIAAAVKVGYRHIDC 48 (137)
Q Consensus 32 ~~~l~~a~~~G~~~~Dt 48 (137)
...+...++.|+|+||-
T Consensus 29 ~~~i~~QL~~GiR~lDl 45 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDL 45 (146)
T ss_dssp SHHHHHHHHTT--EEEE
T ss_pred hHhHHHHHhccCceEEE
Confidence 34688899999999984
No 33
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=40.41 E-value=70 Score=20.96 Aligned_cols=40 Identities=10% Similarity=-0.055 Sum_probs=35.7
Q ss_pred CChhHHHHHHHHHHHcCCCeeeCccccc-CHHHHHHHHHhh
Q 032577 26 AAPDVVGDAIAAAVKVGYRHIDCAQIYG-NEKGIGSALKKL 65 (137)
Q Consensus 26 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg-~e~~~G~~l~~~ 65 (137)
++.+.-.+++...++.|.+.-+.|.-|| +...+..|++++
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4667777888999999999999999999 899999999987
No 34
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=39.13 E-value=1.1e+02 Score=20.11 Aligned_cols=49 Identities=14% Similarity=-0.019 Sum_probs=34.6
Q ss_pred CCCcEEEEeccCCCCCCchhHHHHHHHHHHHcC--CCceeEEEEeecCCCC
Q 032577 72 KREDLWITSKLWCNNHLPEDVPKALDRTLQDLQ--LDYVDLYLVCLYDTIQ 120 (137)
Q Consensus 72 ~r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L~--~~~lDl~~lH~p~~~~ 120 (137)
+|=.+.|+-|.......+..+++.+.+..+... ++..|++++..+....
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~ 94 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDR 94 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCccc
Confidence 455567777765555667888888888886543 3457999999886443
No 35
>PRK10508 hypothetical protein; Provisional
Probab=38.72 E-value=39 Score=26.46 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.8
Q ss_pred CCchhHHHHHHHHHHHcCCCce
Q 032577 87 HLPEDVPKALDRTLQDLQLDYV 108 (137)
Q Consensus 87 ~~~~~i~~~~~~sL~~L~~~~l 108 (137)
.+++.+.+.+++..+++|+|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del 307 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI 307 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE
Confidence 4789999999999999998887
No 36
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=38.55 E-value=1.2e+02 Score=20.31 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCCeeeC
Q 032577 31 VGDAIAAAVKVGYRHIDC 48 (137)
Q Consensus 31 ~~~~l~~a~~~G~~~~Dt 48 (137)
-...+..++..|+|+||-
T Consensus 30 q~~~i~~qL~~GvR~~di 47 (135)
T smart00148 30 SVEGYIQALDHGCRCVEL 47 (135)
T ss_pred cHHHHHHHHHhCCCEEEE
Confidence 356788999999999984
No 37
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=38.46 E-value=1.6e+02 Score=21.54 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHcCCCeeeCccccc-CHHHHHHHHHhh
Q 032577 29 DVVGDAIAAAVKVGYRHIDCAQIYG-NEKGIGSALKKL 65 (137)
Q Consensus 29 ~~~~~~l~~a~~~G~~~~Dta~~Yg-~e~~~G~~l~~~ 65 (137)
-...+.++.+-+.|++.++....+. +-..+.+.+++.
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~ 51 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAA 51 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHc
Confidence 3567788888899999999765444 444455555544
No 38
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=38.45 E-value=1.2e+02 Score=20.39 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=56.4
Q ss_pred ccceeecccCC-hhHHHHHHHHHH-HcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHH
Q 032577 17 PSLGLGTWAAA-PDVVGDAIAAAV-KVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPK 94 (137)
Q Consensus 17 ~~lglGt~~~~-~~~~~~~l~~a~-~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~ 94 (137)
+++-+||..-+ .+-...++..++ .+|+..+|....=..|+++..+.+. .-+=+.+++-.. .. ...-+
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~-------~~d~V~lS~~~~---~~-~~~~~ 72 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET-------DADAILVSSLYG---HG-EIDCR 72 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-------CCCEEEEcCccc---cC-HHHHH
Confidence 34445554332 233344455444 6799999877665456666665542 123334443332 12 22334
Q ss_pred HHHHHHHHcCCCceeEEEEeec--CCCCchHHHHHHHHHHhhhcC
Q 032577 95 ALDRTLQDLQLDYVDLYLVCLY--DTIQHLFIFHLLIEVSLRNCF 137 (137)
Q Consensus 95 ~~~~sL~~L~~~~lDl~~lH~p--~~~~~~~~~~~l~~~~~~~~~ 137 (137)
.+-+.|++.+...+-++.--.+ +...+.+.-+.+.+.|...||
T Consensus 73 ~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf 117 (137)
T PRK02261 73 GLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVF 117 (137)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEE
Confidence 4445566666655543333333 222344555677777877776
No 39
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.56 E-value=1.1e+02 Score=20.08 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHcCCCeeeCccccc--CHHHHHHHHHhhhhCCCCCCCcEEEEecc
Q 032577 29 DVVGDAIAAAVKVGYRHIDCAQIYG--NEKGIGSALKKLFDDGVVKREDLWITSKL 82 (137)
Q Consensus 29 ~~~~~~l~~a~~~G~~~~Dta~~Yg--~e~~~G~~l~~~~~~~~~~r~~~~i~tK~ 82 (137)
.....+.--.+++|.-|+-|-..|. +|-++---|-+ ..+++++++|+
T Consensus 20 a~LYsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld-------~pekl~vagkV 68 (117)
T COG3215 20 ALLYSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD-------FPEKLPVAGKV 68 (117)
T ss_pred HHHHHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC-------chhhccccceE
Confidence 3456666677899999999999995 56555433332 24578888887
No 40
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=36.28 E-value=1.4e+02 Score=20.44 Aligned_cols=50 Identities=6% Similarity=0.107 Sum_probs=36.5
Q ss_pred CCCcEEEEeccCCCCCCchhHHHHHHHHHHHc--CCCceeEEEEeecCCCCch
Q 032577 72 KREDLWITSKLWCNNHLPEDVPKALDRTLQDL--QLDYVDLYLVCLYDTIQHL 122 (137)
Q Consensus 72 ~r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L--~~~~lDl~~lH~p~~~~~~ 122 (137)
+|=.+.|+-|+. ..-.+..+++.++++.+.. .+...|++++..+....+.
T Consensus 46 ~RlG~sVSKKvg-~AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f 97 (138)
T PRK00730 46 CKVGITVSKKFG-KAHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDF 97 (138)
T ss_pred ceEEEEEecccc-cchhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCH
Confidence 455677777764 3556788888888888766 4467999999988765443
No 41
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=33.86 E-value=67 Score=25.82 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=27.4
Q ss_pred HHHHHHcCCCcee--EEEEe---ecCCCCchHHHHHHHHHHhh
Q 032577 97 DRTLQDLQLDYVD--LYLVC---LYDTIQHLFIFHLLIEVSLR 134 (137)
Q Consensus 97 ~~sL~~L~~~~lD--l~~lH---~p~~~~~~~~~~~l~~~~~~ 134 (137)
++.|..||-+-|| ..++| ..|+..+...|+-|.+..||
T Consensus 236 qk~l~klga~liDmd~vqvhptgfidpndr~~~wKfLAAEalR 278 (477)
T KOG2404|consen 236 QKMLMKLGASLIDMDQVQVHPTGFIDPNDRTALWKFLAAEALR 278 (477)
T ss_pred HHHHHHhCccccccceeEecccCccCCCCchhHHHHHHHHHhc
Confidence 4567778877765 46777 34566677889999888775
No 42
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=32.25 E-value=29 Score=25.17 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=10.5
Q ss_pred HHHHHcCCCceeEE
Q 032577 98 RTLQDLQLDYVDLY 111 (137)
Q Consensus 98 ~sL~~L~~~~lDl~ 111 (137)
+.|+.||+||||==
T Consensus 87 qiLealgVD~IDES 100 (208)
T PF01680_consen 87 QILEALGVDYIDES 100 (208)
T ss_dssp HHHHHTT-SEEEEE
T ss_pred hhHHHhCCceeccc
Confidence 46889999999964
No 43
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=31.66 E-value=60 Score=16.18 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHcCCC
Q 032577 29 DVVGDAIAAAVKVGYR 44 (137)
Q Consensus 29 ~~~~~~l~~a~~~G~~ 44 (137)
++..+++..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5677889999999976
No 44
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=31.62 E-value=1.2e+02 Score=19.57 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=21.4
Q ss_pred CCchhHHHHHHHHHHHcCCC--ceeEEEEeecCC
Q 032577 87 HLPEDVPKALDRTLQDLQLD--YVDLYLVCLYDT 118 (137)
Q Consensus 87 ~~~~~i~~~~~~sL~~L~~~--~lDl~~lH~p~~ 118 (137)
.+...+.+.+++.|++-|++ -||.+..|....
T Consensus 22 p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt 55 (119)
T PF02801_consen 22 PNGAALARAIRRALADAGISPEDIDYIEAHGTGT 55 (119)
T ss_dssp TTHHHHHHHHHHHHHHHTS-GGGEEEEE----SS
T ss_pred cCHHHHHHHHHHHHhhhccccccceeeeeecccc
Confidence 35677899999999987765 788888888644
No 45
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=31.29 E-value=2.5e+02 Score=21.67 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=51.1
Q ss_pred cceeecccCChhHHHHHHHHHHHcCCCeee----------Cccccc-----CHHHHHHHHHhhhhCCCCCCCcEEEEecc
Q 032577 18 SLGLGTWAAAPDVVGDAIAAAVKVGYRHID----------CAQIYG-----NEKGIGSALKKLFDDGVVKREDLWITSKL 82 (137)
Q Consensus 18 ~lglGt~~~~~~~~~~~l~~a~~~G~~~~D----------ta~~Yg-----~e~~~G~~l~~~~~~~~~~r~~~~i~tK~ 82 (137)
++++-.+..+++...++.+.+.+.|+..|| +...+| +-..+.+.++...+ .-++-|+.|+
T Consensus 55 p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~-----~~~~pvsvKi 129 (309)
T PF01207_consen 55 PLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRK-----AVPIPVSVKI 129 (309)
T ss_dssp TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHH-----H-SSEEEEEE
T ss_pred ceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhc-----ccccceEEec
Confidence 344333344677788888877788999999 344455 45566666665421 1225566666
Q ss_pred CCC-CCCchhHHHHHHHHHHHcCCCceeEEEEeecCCC---CchHHHHHHHH
Q 032577 83 WCN-NHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTI---QHLFIFHLLIE 130 (137)
Q Consensus 83 ~~~-~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~---~~~~~~~~l~~ 130 (137)
... +.+++...+ +-+.|...| +|.+.+|.=... .....|+.+.+
T Consensus 130 R~g~~~~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~ 177 (309)
T PF01207_consen 130 RLGWDDSPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAE 177 (309)
T ss_dssp ESECT--CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHH
T ss_pred ccccccchhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHH
Confidence 221 223344443 334555666 789999953222 22344665543
No 46
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=31.16 E-value=54 Score=21.86 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHcCCCceeE---EEEeecCCC
Q 032577 90 EDVPKALDRTLQDLQLDYVDL---YLVCLYDTI 119 (137)
Q Consensus 90 ~~i~~~~~~sL~~L~~~~lDl---~~lH~p~~~ 119 (137)
.++.+.++...-+||+||||+ +.+-.|...
T Consensus 7 ~dve~~~~~~V~~lgLdyi~~~rv~vVys~gS~ 39 (133)
T COG4900 7 ADVEADIKNAVVRLGLDYIFQVRVVVVYSPGSH 39 (133)
T ss_pred ccHHHHHHHHHHHhCcceeeeeeEEEEECCCCc
Confidence 467888999999999999875 445555543
No 47
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=30.93 E-value=2.3e+02 Score=21.22 Aligned_cols=81 Identities=9% Similarity=0.085 Sum_probs=43.3
Q ss_pred cCChhHHHHHHHHHHHcCCCeeeCcccccC---------------------HHHHHHHHHhhhhCCCCCCCcEEEEeccC
Q 032577 25 AAAPDVVGDAIAAAVKVGYRHIDCAQIYGN---------------------EKGIGSALKKLFDDGVVKREDLWITSKLW 83 (137)
Q Consensus 25 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~---------------------e~~~G~~l~~~~~~~~~~r~~~~i~tK~~ 83 (137)
.++.++..++.+.+-+.|+.+|=|...-.+ -.++- .+++ ....++|+|=.
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~-~~A~-------tgkPvIlSTG~- 122 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLE-YIAK-------TGKPVILSTGM- 122 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHH-HHHT-------T-S-EEEE-TT-
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHH-HHHH-------hCCcEEEECCC-
Confidence 457889999999999999999876544322 22222 1221 23456776543
Q ss_pred CCCCCchhHHHHHHHHHHHcCCCceeEEEEeecCCCC
Q 032577 84 CNNHLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQ 120 (137)
Q Consensus 84 ~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~ 120 (137)
.+-++|.++++...+. ..-|+.++|.....+
T Consensus 123 ---stl~EI~~Av~~~~~~---~~~~l~llHC~s~YP 153 (241)
T PF03102_consen 123 ---STLEEIERAVEVLREA---GNEDLVLLHCVSSYP 153 (241)
T ss_dssp -----HHHHHHHHHHHHHH---CT--EEEEEE-SSSS
T ss_pred ---CCHHHHHHHHHHHHhc---CCCCEEEEecCCCCC
Confidence 2345666666655332 457899999876543
No 48
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=29.32 E-value=63 Score=21.96 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=21.7
Q ss_pred ChhHHHHHHHHHHHcCCCeeeCccccc
Q 032577 27 APDVVGDAIAAAVKVGYRHIDCAQIYG 53 (137)
Q Consensus 27 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg 53 (137)
+.+++-+.++.|+++|.+-.+-+..||
T Consensus 81 s~eevd~~v~ka~eaGGk~~~~~~d~g 107 (133)
T COG3607 81 SREEVDELVDKALEAGGKPANEPQDEG 107 (133)
T ss_pred cHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 468999999999999998766555543
No 49
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=29.06 E-value=2.8e+02 Score=21.60 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=49.8
Q ss_pred ceeecccCChhHHHHHHHHHHHcCCCeee----------Cccccc-----CHHHHHHHHHhhhhCCCCCCCcEEEEeccC
Q 032577 19 LGLGTWAAAPDVVGDAIAAAVKVGYRHID----------CAQIYG-----NEKGIGSALKKLFDDGVVKREDLWITSKLW 83 (137)
Q Consensus 19 lglGt~~~~~~~~~~~l~~a~~~G~~~~D----------ta~~Yg-----~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~ 83 (137)
+++-.+..+.++..++.+.+.+.|+..|| +...|| +-+.+.+.++... ..-++-|+.|+.
T Consensus 57 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~-----~~~~~PVsvKiR 131 (318)
T TIGR00742 57 VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQ-----EAVNIPVTVKHR 131 (318)
T ss_pred EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHH-----HHhCCCeEEEEe
Confidence 33333344677888888888889999999 445566 2445666666541 112345778874
Q ss_pred CCCCCchhH--HHHHHHHHHHcCCCceeEEEEee
Q 032577 84 CNNHLPEDV--PKALDRTLQDLQLDYVDLYLVCL 115 (137)
Q Consensus 84 ~~~~~~~~i--~~~~~~sL~~L~~~~lDl~~lH~ 115 (137)
......+.. ...+-+.+...| +|.+-+|.
T Consensus 132 ~g~~~~~~~~~~~~~~~~l~~~G---~~~itvHg 162 (318)
T TIGR00742 132 IGIDPLDSYEFLCDFVEIVSGKG---CQNFIVHA 162 (318)
T ss_pred cCCCCcchHHHHHHHHHHHHHcC---CCEEEEeC
Confidence 221111111 123334445555 67778884
No 50
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=27.59 E-value=2.4e+02 Score=20.35 Aligned_cols=83 Identities=11% Similarity=0.092 Sum_probs=45.5
Q ss_pred cccCChhHHHHHHHHHHHcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHHHHHHHHHH
Q 032577 23 TWAAAPDVVGDAIAAAVKVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPKALDRTLQD 102 (137)
Q Consensus 23 t~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~ 102 (137)
.++.+.++-.+++..+++.|..++|---....+...-...... .+.+++++-.-+....+.+.+...+++.. .
T Consensus 69 ~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~------~~~~iI~S~H~f~~tp~~~~l~~~~~~~~-~ 141 (224)
T PF01487_consen 69 RFQGSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARK------GGTKIILSYHDFEKTPSWEELIELLEEMQ-E 141 (224)
T ss_dssp SBSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHH------TTSEEEEEEEESS---THHHHHHHHHHHH-H
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhh------CCCeEEEEeccCCCCCCHHHHHHHHHHHH-h
Confidence 3455678889999999999999999755422222211122211 46677777664443334444555554444 6
Q ss_pred cCCCceeEEE
Q 032577 103 LQLDYVDLYL 112 (137)
Q Consensus 103 L~~~~lDl~~ 112 (137)
+|.|.+=+..
T Consensus 142 ~gadivKia~ 151 (224)
T PF01487_consen 142 LGADIVKIAV 151 (224)
T ss_dssp TT-SEEEEEE
T ss_pred cCCCeEEEEe
Confidence 6765444443
No 51
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=27.52 E-value=3.4e+02 Score=22.05 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=35.4
Q ss_pred cccceeecccC------------ChhHHHHHHHHHHHcCCCeeeCccccc----CHHHHHHHHHhhh
Q 032577 16 IPSLGLGTWAA------------APDVVGDAIAAAVKVGYRHIDCAQIYG----NEKGIGSALKKLF 66 (137)
Q Consensus 16 v~~lglGt~~~------------~~~~~~~~l~~a~~~G~~~~Dta~~Yg----~e~~~G~~l~~~~ 66 (137)
|-++.+|...+ +.+++.+++..+.+.|+.-+..--+|| +.+.+-+-++..+
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~ 214 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQAL 214 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 45888888755 346778888888888988877777787 4444445555443
No 52
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=27.49 E-value=1.6e+02 Score=21.90 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHcCCCeeeC-ccccc-CHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHHHHHHHHHHcCCC
Q 032577 29 DVVGDAIAAAVKVGYRHIDC-AQIYG-NEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPKALDRTLQDLQLD 106 (137)
Q Consensus 29 ~~~~~~l~~a~~~G~~~~Dt-a~~Yg-~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L~~~ 106 (137)
+.+.++++.|.+.|+...=+ ...+. +...+-+..+...+-| -+.+.+.--. ....|..+.+-++...++++.
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G---~d~i~l~DT~--G~~~P~~v~~lv~~l~~~~~~- 185 (263)
T cd07943 112 DVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG---ADCVYVTDSA--GAMLPDDVRERVRALREALDP- 185 (263)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC---CCEEEEcCCC--CCcCHHHHHHHHHHHHHhCCC-
Confidence 46777888888888753211 11222 4555555555443333 2333333222 335677777777777777663
Q ss_pred ceeEEEEeecCC
Q 032577 107 YVDLYLVCLYDT 118 (137)
Q Consensus 107 ~lDl~~lH~p~~ 118 (137)
+ -+-+|.-+.
T Consensus 186 -~-~l~~H~Hn~ 195 (263)
T cd07943 186 -T-PVGFHGHNN 195 (263)
T ss_pred -c-eEEEEecCC
Confidence 1 345565433
No 53
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=27.47 E-value=1e+02 Score=18.58 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCCceeEEEEeecCCCCch
Q 032577 94 KALDRTLQDLQLDYVDLYLVCLYDTIQHL 122 (137)
Q Consensus 94 ~~~~~sL~~L~~~~lDl~~lH~p~~~~~~ 122 (137)
+++++.|+..|.+-.++.-++.++...|.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~ 30 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQ 30 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcc
Confidence 46778888999888888877777755543
No 54
>KOG2371 consensus Molybdopterin biosynthesis protein [Coenzyme transport and metabolism]
Probab=27.17 E-value=1.3e+02 Score=24.25 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEecc
Q 032577 29 DVVGDAIAAAVKVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKL 82 (137)
Q Consensus 29 ~~~~~~l~~a~~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~ 82 (137)
....+++....+.|++.||++..-.+-..+-+.|++. ..+.++.|++=.
T Consensus 215 ~n~s~l~~l~~~~Gf~~i~~gvv~D~~~~i~e~L~e~-----~~~aDvIlTtGG 263 (411)
T KOG2371|consen 215 SNRSQLLELFQEHGFTAIDAGVVPDDVTRIKEKLREA-----SSFADVILTTGG 263 (411)
T ss_pred cchHHHHHHHHHhCccccccccccCcHHHHHHHHHHh-----hhhccEEEecCC
Confidence 4566778888899999999998887777777888776 467788888665
No 55
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=26.94 E-value=63 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHcCCCeeeCcccc
Q 032577 29 DVVGDAIAAAVKVGYRHIDCAQIY 52 (137)
Q Consensus 29 ~~~~~~l~~a~~~G~~~~Dta~~Y 52 (137)
+.+.+.++...+.|++++++...|
T Consensus 254 ~dI~~tv~~lr~rG~~fl~ip~tY 277 (363)
T COG3185 254 DDIYATVAALRERGVKFLPIPETY 277 (363)
T ss_pred cHHHHHHHHHHHcCCccCCCchhH
Confidence 677788888888888888888877
No 56
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=26.92 E-value=3.7e+02 Score=22.27 Aligned_cols=39 Identities=31% Similarity=0.188 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHHcCCCe---eeCcccccCHHHHHHHHHhh
Q 032577 27 APDVVGDAIAAAVKVGYRH---IDCAQIYGNEKGIGSALKKL 65 (137)
Q Consensus 27 ~~~~~~~~l~~a~~~G~~~---~Dta~~Yg~e~~~G~~l~~~ 65 (137)
+++-+...++.|.++|+.. ||.=..-.|-+.-.++.++.
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~ 137 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKH 137 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhc
Confidence 5677889999999999864 45443333444444444443
No 57
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=26.84 E-value=76 Score=25.54 Aligned_cols=88 Identities=15% Similarity=0.279 Sum_probs=46.0
Q ss_pred eeecccCChhHHHHHHHHHHHcCCCeee-----Cccccc-CHHHHHHHHHhhhhCCCCCCCcEEEEeccC----------
Q 032577 20 GLGTWAAAPDVVGDAIAAAVKVGYRHID-----CAQIYG-NEKGIGSALKKLFDDGVVKREDLWITSKLW---------- 83 (137)
Q Consensus 20 glGt~~~~~~~~~~~l~~a~~~G~~~~D-----ta~~Yg-~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~---------- 83 (137)
|.||-.++.++-.+ +.+...+| ++.-+. +...+.+.+++. ...=+||-||+-
T Consensus 95 G~gt~~f~~~~Yl~------~~~~~~yD~fiii~s~rf~~ndv~La~~i~~~------gK~fyfVRTKvD~Dl~~~~~~~ 162 (376)
T PF05049_consen 95 GIGTPNFPPEEYLK------EVKFYRYDFFIIISSERFTENDVQLAKEIQRM------GKKFYFVRTKVDSDLYNERRRK 162 (376)
T ss_dssp -GGGSS--HHHHHH------HTTGGG-SEEEEEESSS--HHHHHHHHHHHHT------T-EEEEEE--HHHHHHHHHCC-
T ss_pred CCCCCCCCHHHHHH------HccccccCEEEEEeCCCCchhhHHHHHHHHHc------CCcEEEEEecccccHhhhhccC
Confidence 55665444433333 33555555 233343 677888888875 345567889981
Q ss_pred CCCCCc----hhHHHHHHHHHHHcCCCceeEEEEeecCCC
Q 032577 84 CNNHLP----EDVPKALDRTLQDLQLDYVDLYLVCLYDTI 119 (137)
Q Consensus 84 ~~~~~~----~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~ 119 (137)
|..++. +.|++.+.+.|++-|+..-.+|++-.-+..
T Consensus 163 p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 163 PRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred CcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence 223333 356777888888889998999999776543
No 58
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=26.45 E-value=2e+02 Score=18.98 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=28.7
Q ss_pred CCchhHHHHHHHHHHHcCCCceeEEEEeecCCCCchHHHHHH
Q 032577 87 HLPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQHLFIFHLL 128 (137)
Q Consensus 87 ~~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~~~~~~~l 128 (137)
-+.+.+.+.+++.|+..+++.-++-.+-.++.......+.++
T Consensus 12 ~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~ 53 (121)
T PF01890_consen 12 APAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLEL 53 (121)
T ss_dssp --HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHH
Confidence 467889999999999999988888888888776655444333
No 59
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.44 E-value=2.1e+02 Score=19.37 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=43.4
Q ss_pred cceeecccCC-hhHHHHHHHHHH-HcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHHH
Q 032577 18 SLGLGTWAAA-PDVVGDAIAAAV-KVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPKA 95 (137)
Q Consensus 18 ~lglGt~~~~-~~~~~~~l~~a~-~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~~ 95 (137)
.+-+||...+ .+....++..++ ++|+..+|....-..|+++..+.+. .-+-+-+++-... + ....+.
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~-------~adiVglS~l~~~---~-~~~~~~ 71 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET-------KADAILVSSLYGH---G-EIDCKG 71 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-------CCCEEEEeccccc---C-HHHHHH
Confidence 3445554432 234455666555 6799999988776668888777663 1233334444321 1 223344
Q ss_pred HHHHHHHcCCCc
Q 032577 96 LDRTLQDLQLDY 107 (137)
Q Consensus 96 ~~~sL~~L~~~~ 107 (137)
+.+-|++-|+..
T Consensus 72 ~~~~l~~~gl~~ 83 (134)
T TIGR01501 72 LRQKCDEAGLEG 83 (134)
T ss_pred HHHHHHHCCCCC
Confidence 555566666643
No 60
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=26.36 E-value=2.6e+02 Score=20.39 Aligned_cols=84 Identities=12% Similarity=0.136 Sum_probs=45.0
Q ss_pred CChhHHHHHHHHHHHc-----CCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEeccC-----------------
Q 032577 26 AAPDVVGDAIAAAVKV-----GYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKLW----------------- 83 (137)
Q Consensus 26 ~~~~~~~~~l~~a~~~-----G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~----------------- 83 (137)
++.++..+.+..+++. |+|--=.+..-.++..+...++.. ..|.-+|+-++..
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l-----~~~gl~FvDS~T~~~s~a~~~A~~~gvp~~ 145 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL-----KERGLFFVDSRTTPRSVAPQVAKELGVPAA 145 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH-----HHTT-EEEE-S--TT-SHHHHHHHCT--EE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH-----HHcCCEEEeCCCCcccHHHHHHHHcCCCEE
Confidence 3567777777777754 333211222222566666666655 1355566644431
Q ss_pred ------CCCCCchhHHHHHHHHHHHcCCCceeEEEEe
Q 032577 84 ------CNNHLPEDVPKALDRTLQDLQLDYVDLYLVC 114 (137)
Q Consensus 84 ------~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lH 114 (137)
....+.+.|++++++..+.-+..--=+...|
T Consensus 146 ~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 146 RRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp E-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred eeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 1335677888888888876665555566666
No 61
>PRK05406 LamB/YcsF family protein; Provisional
Probab=26.29 E-value=2.9e+02 Score=20.91 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=44.6
Q ss_pred eeecccCC-hhHHHHHHHHH-HHcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEecc-C---------CCCC
Q 032577 20 GLGTWAAA-PDVVGDAIAAA-VKVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKL-W---------CNNH 87 (137)
Q Consensus 20 glGt~~~~-~~~~~~~l~~a-~~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~-~---------~~~~ 87 (137)
|||.|+++ +++....+..| +..|+ +.|....+-+.++-. ....|-|-..- + ..+.
T Consensus 13 ~fG~w~~g~D~~lmp~IssANIACG~-------HAGDp~~M~~tv~lA------~~~gV~IGAHPgypD~~gFGRR~m~~ 79 (246)
T PRK05406 13 SFGAWKMGDDEALLPLVTSANIACGF-------HAGDPAVMRRTVRLA------KENGVAIGAHPGYPDLEGFGRRNMDL 79 (246)
T ss_pred CCCCCCCCCHHHHHHHhhhHHHhccc-------cCCCHHHHHHHHHHH------HHcCCeEccCCCCCccCCCCCCCCCC
Confidence 78999874 45567777776 35553 456666666666654 23345555443 1 1235
Q ss_pred CchhHHHHHHHHHHHc
Q 032577 88 LPEDVPKALDRTLQDL 103 (137)
Q Consensus 88 ~~~~i~~~~~~sL~~L 103 (137)
++++++..+...+..|
T Consensus 80 s~~el~~~v~yQigAL 95 (246)
T PRK05406 80 SPEELYALVLYQIGAL 95 (246)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7888888888777666
No 62
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=26.23 E-value=2.7e+02 Score=20.44 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCeeeCccccc-CHHHHHHHHHhh
Q 032577 30 VVGDAIAAAVKVGYRHIDCAQIYG-NEKGIGSALKKL 65 (137)
Q Consensus 30 ~~~~~l~~a~~~G~~~~Dta~~Yg-~e~~~G~~l~~~ 65 (137)
...+.++.+-+.|+..++....+. +-..+.+.++++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~ 52 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASN 52 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHc
Confidence 466778999999999999765544 556777777655
No 63
>cd07053 BMC_PduT_repeat1 1,2-propanediol utilization protein T (PduT), Bacterial Micro-Compartment (BMC) domain repeat 1. PduT proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles which are involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduT might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles at present no experimental evidence directly supports this view. PduT proteins contain two tandem BMC domains repeats. This CD contains repeat 1 (the first BMC domain of PduT) as well as carboxysome shell protein sequence homolog, EutM protein, are also included in this CD. They too might exist as hexamers and might play similar functional roles in the construction of the eut organelle outer shell which still remains poorly understood.
Probab=26.18 E-value=1.4e+02 Score=18.03 Aligned_cols=31 Identities=16% Similarity=-0.046 Sum_probs=25.9
Q ss_pred CchhHHHHHHHHHHHcCCCceeEEEEeecCC
Q 032577 88 LPEDVPKALDRTLQDLQLDYVDLYLVCLYDT 118 (137)
Q Consensus 88 ~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~ 118 (137)
+-..++.+++.-.+..+-..++-+.|++|++
T Consensus 46 dvsaV~~Av~a~~~~~~~~~v~~~vI~~p~~ 76 (76)
T cd07053 46 DVGAVQAAVDAGKEIGGKYVVDSFVLPNVHP 76 (76)
T ss_pred cHHHHHHHHHHHHHHhCCcEEEEEEeCCCCC
Confidence 4578899999999888877899999998864
No 64
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=25.68 E-value=80 Score=21.98 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=18.1
Q ss_pred ChhHHHHHHHHHHHcCCCeee
Q 032577 27 APDVVGDAIAAAVKVGYRHID 47 (137)
Q Consensus 27 ~~~~~~~~l~~a~~~G~~~~D 47 (137)
.++.....+..|++.|++.|+
T Consensus 11 ~peNT~~af~~a~~~G~~~iE 31 (179)
T cd08555 11 GQENTLEAFYRALDAGARGLE 31 (179)
T ss_pred CCccHHHHHHHHHHcCCCEEE
Confidence 357788899999999999886
No 65
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=25.58 E-value=2.8e+02 Score=23.40 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHHcCCCeeeCccccc--CHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHHHHHHHHHHcC
Q 032577 27 APDVVGDAIAAAVKVGYRHIDCAQIYG--NEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPKALDRTLQDLQ 104 (137)
Q Consensus 27 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg--~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L~ 104 (137)
+.+-+.+++.+...+|.+.|.-++--| +-...|+.++.. ......|+++.|++.+.... . .--+-..+=..-|
T Consensus 202 e~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~-~tn~~~~e~v~Is~HcHND~-G---~a~Ant~~g~~AG 276 (560)
T KOG2367|consen 202 ELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYL-KTNTPGREKVCISTHCHNDL-G---CATANTELGLLAG 276 (560)
T ss_pred cHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHH-HccCCCceeEEEEEeecCCc-c---HHHHHHHHHhhcC
Confidence 456688999999999999987777666 456677777643 33334599999999985421 1 1111111112236
Q ss_pred CCceeEEEEee
Q 032577 105 LDYVDLYLVCL 115 (137)
Q Consensus 105 ~~~lDl~~lH~ 115 (137)
-+.||.-++-.
T Consensus 277 A~~VE~~i~Gi 287 (560)
T KOG2367|consen 277 ARQVEVTINGI 287 (560)
T ss_pred cceEEEEeecc
Confidence 67777776653
No 66
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=25.17 E-value=2.4e+02 Score=19.66 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=30.3
Q ss_pred HHHHHHH-HHHcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEec
Q 032577 31 VGDAIAA-AVKVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSK 81 (137)
Q Consensus 31 ~~~~l~~-a~~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK 81 (137)
....+.. ..+.|++.......--++..|-+++++. ..+.+++|+|=
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~-----~~~~dlVIttG 66 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRA-----SERADLVITTG 66 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH-----HhCCCEEEECC
Confidence 3334443 4477988766554444677788888876 35778999884
No 67
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=25.06 E-value=2.6e+02 Score=19.87 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHcCCCeeeCccccc-CHHHHHHHHHhhhhCCCCCCCcEEEEeccCC-CCCCchhHHHHHHHHHHHcCC
Q 032577 29 DVVGDAIAAAVKVGYRHIDCAQIYG-NEKGIGSALKKLFDDGVVKREDLWITSKLWC-NNHLPEDVPKALDRTLQDLQL 105 (137)
Q Consensus 29 ~~~~~~l~~a~~~G~~~~Dta~~Yg-~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~-~~~~~~~i~~~~~~sL~~L~~ 105 (137)
+...-+++.|-+.|+.+|=-|..+| +-...-+.+. + . =++++.|.-.. ...+...+.+.+++-|+..|.
T Consensus 14 ~tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g--~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa 84 (186)
T COG1751 14 ETLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G--D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGA 84 (186)
T ss_pred HHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c--C-ceEEEEEeecccccCCceecCHHHHHHHHHcCc
Confidence 3455667788899999999999988 3333333332 1 1 23555555422 122344577788888888875
No 68
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=25.00 E-value=90 Score=26.58 Aligned_cols=60 Identities=7% Similarity=-0.012 Sum_probs=44.7
Q ss_pred CcEEEEeccCCCCCCchhHHHHHHHHHHHcCCCceeE-----EEEeecCCCCchHHHHHHHHHHhh
Q 032577 74 EDLWITSKLWCNNHLPEDVPKALDRTLQDLQLDYVDL-----YLVCLYDTIQHLFIFHLLIEVSLR 134 (137)
Q Consensus 74 ~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L~~~~lDl-----~~lH~p~~~~~~~~~~~l~~~~~~ 134 (137)
+.+.+-.|+.....+++++ +.+.+.-++.|-.++|+ +++||.....-.+.|+.|.++||.
T Consensus 115 ~~fM~RvripgG~lt~~Q~-~~la~ia~~yg~g~~~lTTRq~iQlhgI~~~d~~~i~~~l~~~GL~ 179 (593)
T PRK09567 115 DSYMCRLRIPNGILTHWQF-AGLADLADRHGGGYSHVTTRANLQLREIPPEHAVPVLEGLVDLGLT 179 (593)
T ss_pred CeEEEEEEeCCeecCHHHH-HHHHHHHHHHCCCeEEEeccccEEeccCCHHHHHHHHHHHHHCCCC
Confidence 3445667775555665544 45666677788889998 999999877778899999998864
No 69
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=24.90 E-value=3.4e+02 Score=21.26 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=27.9
Q ss_pred eeCCCCCccccceeecccCChhHHHHHHHHHHHcCCCeeeCc
Q 032577 8 FKLNAGAKIPSLGLGTWAAAPDVVGDAIAAAVKVGYRHIDCA 49 (137)
Q Consensus 8 ~~l~~g~~v~~lglGt~~~~~~~~~~~l~~a~~~G~~~~Dta 49 (137)
.+|+.|...+. ++++.++..++++..-++|+..|+.+
T Consensus 8 ~TLRDG~q~~~-----~~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 8 VTLRDGMHAIR-----HQFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCCCCCCcCCC-----CcCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 34566665432 45677899999999999999999983
No 70
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=24.86 E-value=84 Score=15.57 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCCeeeCc
Q 032577 32 GDAIAAAVKVGYRHIDCA 49 (137)
Q Consensus 32 ~~~l~~a~~~G~~~~Dta 49 (137)
.+.++.++++|+..|-|-
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 557789999999988663
No 71
>PRK14865 rnpA ribonuclease P; Provisional
Probab=24.67 E-value=2.1e+02 Score=18.65 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=29.4
Q ss_pred CCCcEEEEeccCCCCCCchhHHHHHHHHHHHc--CCCceeEEEEeecCCC
Q 032577 72 KREDLWITSKLWCNNHLPEDVPKALDRTLQDL--QLDYVDLYLVCLYDTI 119 (137)
Q Consensus 72 ~r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L--~~~~lDl~~lH~p~~~ 119 (137)
+|=-+.|+-|+ .....+.-+++.++++.+.. .+...|++++..+...
T Consensus 45 ~RvG~sVsKKv-g~AV~RNRiKR~lRE~~R~~~~~l~~~divii~r~~~~ 93 (116)
T PRK14865 45 TKIGITVSRKV-GNAVVRNRIKRLVREFYRLNKSLFIVADYNIIAKKGAE 93 (116)
T ss_pred cEEEEEEeccc-CcchhHHHHHHHHHHHHHHhhccCCCCCEEEEEeCCcc
Confidence 34445555554 34556777888888877643 2345688888776543
No 72
>PF11181 YflT: Heat induced stress protein YflT
Probab=24.42 E-value=1.4e+02 Score=18.91 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=18.8
Q ss_pred ccCHHHHHHHHHhhhhCCCCCCCcEEEEec
Q 032577 52 YGNEKGIGSALKKLFDDGVVKREDLWITSK 81 (137)
Q Consensus 52 Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK 81 (137)
|.++..+-.++.++..+| ...++++|.+|
T Consensus 6 ~~~~~E~~~~I~~L~~~G-y~~ddI~Vva~ 34 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQG-YSEDDIYVVAK 34 (103)
T ss_pred ECCHHHHHHHHHHHHHcC-CCcccEEEEEc
Confidence 335555556666665566 57777888776
No 73
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=24.42 E-value=83 Score=23.78 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHcCCC
Q 032577 28 PDVVGDAIAAAVKVGYR 44 (137)
Q Consensus 28 ~~~~~~~l~~a~~~G~~ 44 (137)
+....+.++.|.+.|+.
T Consensus 43 p~~M~rtV~lA~e~gV~ 59 (252)
T COG1540 43 PLTMRRTVRLAKENGVA 59 (252)
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 44556788888888875
No 74
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=79 Score=24.07 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=16.5
Q ss_pred CChhHHHHHHHHHHHcCCC
Q 032577 26 AAPDVVGDAIAAAVKVGYR 44 (137)
Q Consensus 26 ~~~~~~~~~l~~a~~~G~~ 44 (137)
+..+++.+++..|+++|+-
T Consensus 183 lt~eea~~Lv~eAi~AGi~ 201 (271)
T KOG0173|consen 183 LTKEEAIKLVCEAIAAGIF 201 (271)
T ss_pred cCHHHHHHHHHHHHHhhhc
Confidence 3678999999999999973
No 75
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=24.27 E-value=3.5e+02 Score=21.16 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=22.3
Q ss_pred CCcEEEEeccCCCC-----CCchhHHHHHHHHHHHcCCCceeE
Q 032577 73 REDLWITSKLWCNN-----HLPEDVPKALDRTLQDLQLDYVDL 110 (137)
Q Consensus 73 r~~~~i~tK~~~~~-----~~~~~i~~~~~~sL~~L~~~~lDl 110 (137)
..++.|..|+...+ .+.+.. ..+-+-|+..|+|+|++
T Consensus 202 G~d~~v~iRi~~~D~~~~g~~~~e~-~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEGGSTWEEV-VALAKALEAAGADILNT 243 (353)
T ss_pred CCCceEEEEecccccCCCCCCHHHH-HHHHHHHHHcCCCEEEe
Confidence 34677777774433 233332 24445678889999987
No 76
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=24.16 E-value=1.1e+02 Score=23.77 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCCeeeCcccc
Q 032577 30 VVGDAIAAAVKVGYRHIDCAQIY 52 (137)
Q Consensus 30 ~~~~~l~~a~~~G~~~~Dta~~Y 52 (137)
...+.++.|.+.|+..+-|++.+
T Consensus 250 ~~~~~l~~a~~~gi~VV~~Sq~~ 272 (323)
T cd00411 250 DLIDELEEAAERGVVVVNSTQCE 272 (323)
T ss_pred HHHHHHHHHHHCCCEEEEecCCC
Confidence 45555555555555555555554
No 77
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=24.02 E-value=2.4e+02 Score=19.22 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHcCCCeeeCccccc---C--HHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCC-CchhHHHHHHHHHH
Q 032577 28 PDVVGDAIAAAVKVGYRHIDCAQIYG---N--EKGIGSALKKLFDDGVVKREDLWITSKLWCNNH-LPEDVPKALDRTLQ 101 (137)
Q Consensus 28 ~~~~~~~l~~a~~~G~~~~Dta~~Yg---~--e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~-~~~~i~~~~~~sL~ 101 (137)
.++..+..+.|.+.|...+.....|+ + ++.+-+.+++..+. . +.++-+.-+..|... +++.+.+..+. ++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~--~-~~~~pv~iy~~p~~~~~~~~~~~~~~~-~~ 139 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA--A-DGGLPLKVILETRGLKTADEIAKAARI-AA 139 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH--h-cCCceEEEEEECCCCCCHHHHHHHHHH-HH
Confidence 57888999999999999998754443 3 45555555543211 1 123334433333222 44444444333 35
Q ss_pred HcCCCcee
Q 032577 102 DLQLDYVD 109 (137)
Q Consensus 102 ~L~~~~lD 109 (137)
..|++.|.
T Consensus 140 ~~g~~~iK 147 (201)
T cd00945 140 EAGADFIK 147 (201)
T ss_pred HhCCCEEE
Confidence 66766654
No 78
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.93 E-value=2.5e+02 Score=19.32 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=25.1
Q ss_pred CchhHHHHHHHHHHHcCCCceeEEEEeecCCCC---chHHHHHHHHHHh
Q 032577 88 LPEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQ---HLFIFHLLIEVSL 133 (137)
Q Consensus 88 ~~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~---~~~~~~~l~~~~~ 133 (137)
..+.+++++++.|+.+|++.+.+-+.-.|-..+ ..+..+.|.+.|+
T Consensus 40 a~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~d~it~~gr~~l~~~gi 88 (146)
T TIGR02159 40 ALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTTDWITEDAREKLREYGI 88 (146)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCChHHCCHHHHHHHHhcCc
Confidence 345677777777777776666655444442222 2244455554443
No 79
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=23.93 E-value=1e+02 Score=23.06 Aligned_cols=31 Identities=23% Similarity=0.109 Sum_probs=26.7
Q ss_pred ecccCChhHHHHHHHHHHHcCCCeeeCcccc
Q 032577 22 GTWAAAPDVVGDAIAAAVKVGYRHIDCAQIY 52 (137)
Q Consensus 22 Gt~~~~~~~~~~~l~~a~~~G~~~~Dta~~Y 52 (137)
|...++.+...+++++|-..|.+++|-|..-
T Consensus 20 GLnNFd~~~V~~i~~AA~~ggAt~vDIAadp 50 (242)
T PF04481_consen 20 GLNNFDAESVAAIVKAAEIGGATFVDIAADP 50 (242)
T ss_pred CccccCHHHHHHHHHHHHccCCceEEecCCH
Confidence 5566788999999999999999999988664
No 80
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=23.86 E-value=3e+02 Score=20.30 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHcCCCeeeCcccccC-------HHHHHHHHHhh
Q 032577 29 DVVGDAIAAAVKVGYRHIDCAQIYGN-------EKGIGSALKKL 65 (137)
Q Consensus 29 ~~~~~~l~~a~~~G~~~~Dta~~Yg~-------e~~~G~~l~~~ 65 (137)
....+.++.|++.|++.|-.+..... ...+.++++..
T Consensus 89 ~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A 132 (247)
T cd07491 89 QSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEA 132 (247)
T ss_pred HHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHH
Confidence 45789999999999999988754432 56778888765
No 81
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=23.62 E-value=2.4e+02 Score=19.02 Aligned_cols=46 Identities=2% Similarity=-0.126 Sum_probs=30.1
Q ss_pred CCCcEEEEeccCCCCCCchhHHHHHHHHHHHc----CC----------CceeEEEEeecC
Q 032577 72 KREDLWITSKLWCNNHLPEDVPKALDRTLQDL----QL----------DYVDLYLVCLYD 117 (137)
Q Consensus 72 ~r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L----~~----------~~lDl~~lH~p~ 117 (137)
.|=-+.|+-|.......+..+++.++++.+.. .. ..+|+.++..+.
T Consensus 50 ~RvG~sVsKK~~g~AV~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~ 109 (133)
T PRK01903 50 ASVLFSVSKKRVPRAVKRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGR 109 (133)
T ss_pred ceEEEEEecccCCchhhhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEecc
Confidence 34445555664444556778888888887653 32 247999999883
No 82
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=23.60 E-value=1.6e+02 Score=22.47 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=27.1
Q ss_pred chhHHHHHHHHHHHcCCCc--eeEEEEe--ecCCCCchHHHHHHHHHHhhh
Q 032577 89 PEDVPKALDRTLQDLQLDY--VDLYLVC--LYDTIQHLFIFHLLIEVSLRN 135 (137)
Q Consensus 89 ~~~i~~~~~~sL~~L~~~~--lDl~~lH--~p~~~~~~~~~~~l~~~~~~~ 135 (137)
.+-..++.++.|++-|++. ||++... +|+...|.-+.....++|+.+
T Consensus 53 ~~la~~Aa~~aL~~ag~~~~~Id~li~~t~~~d~~~p~~a~~v~~~Lg~~~ 103 (326)
T PRK05963 53 SDLAASAGDMALSDAGIERSDIALTLLATSTPDHLLPPSAPLLAHRLGLQN 103 (326)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCcHHHHHHHHhCCCC
Confidence 3445677788888777654 7877664 344333444333444556544
No 83
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=23.33 E-value=93 Score=24.10 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=23.1
Q ss_pred ccccceeecccC--------------ChhHHHHHHHHHHHcCCCe
Q 032577 15 KIPSLGLGTWAA--------------APDVVGDAIAAAVKVGYRH 45 (137)
Q Consensus 15 ~v~~lglGt~~~--------------~~~~~~~~l~~a~~~G~~~ 45 (137)
-+|.-||||--+ +.....-+++.|+++||..
T Consensus 8 ViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~ 52 (291)
T COG1210 8 VIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEE 52 (291)
T ss_pred EEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCE
Confidence 468889998422 3445778899999999973
No 84
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=23.22 E-value=3.6e+02 Score=21.01 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCch-hHHHHHHHHHHHcCCCceeEEEEeecCCC
Q 032577 55 EKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPE-DVPKALDRTLQDLQLDYVDLYLVCLYDTI 119 (137)
Q Consensus 55 e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~-~i~~~~~~sL~~L~~~~lDl~~lH~p~~~ 119 (137)
=.-+++++++. +-..++|..-......... .+...++...+.++-+.+|.++++..+..
T Consensus 196 v~gI~eAi~~s------~a~kV~v~N~~~~~get~~~~~~d~v~~i~~~~~~~~~d~vlv~~~~~~ 255 (308)
T cd07187 196 VKGIAEAIRAS------KAPKVYICNLMTQPGETDGFTLSDHVRALLRHLGEGLLDVVLVNSERPP 255 (308)
T ss_pred chhHHHHHHhC------CCCEEEEecCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCEEEECCCCCc
Confidence 56788888864 4566777654432222222 57788888888998789999999876543
No 85
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=23.21 E-value=68 Score=22.12 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCccccceeecccCChhHHHHHHHHHH
Q 032577 13 GAKIPSLGLGTWAAAPDVVGDAIAAAV 39 (137)
Q Consensus 13 g~~v~~lglGt~~~~~~~~~~~l~~a~ 39 (137)
-+.+|+||-|...++-+++.++++...
T Consensus 115 sIa~P~IG~GlgGl~W~~V~~ii~~~~ 141 (154)
T PHA02595 115 TIYIPRIGAGIAGGDWDKIEAIIDEAT 141 (154)
T ss_pred EEeeCCCCccCCCCCHHHHHHHHHHhc
Confidence 366899999998888899999999874
No 86
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.12 E-value=2.6e+02 Score=19.30 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=60.0
Q ss_pred ccceeecccC-ChhHHHHHHHHHH-HcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHH
Q 032577 17 PSLGLGTWAA-APDVVGDAIAAAV-KVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPK 94 (137)
Q Consensus 17 ~~lglGt~~~-~~~~~~~~l~~a~-~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~ 94 (137)
|++-++...+ ..+...+.+..++ +.|+..+.+...--.|+.+-.++++ .-+++..+-+ +......-+
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--------dv~vIgvSsl---~g~h~~l~~ 81 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--------DVDVIGVSSL---DGGHLTLVP 81 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--------CCCEEEEEec---cchHHHHHH
Confidence 4444444433 2344566677666 6788888776655457788777764 2344444443 234466778
Q ss_pred HHHHHHHHcCCCceeEEEEeecCCCCchHHHHHHHHHHhhh
Q 032577 95 ALDRTLQDLQLDYVDLYLVCLYDTIQHLFIFHLLIEVSLRN 135 (137)
Q Consensus 95 ~~~~sL~~L~~~~lDl~~lH~p~~~~~~~~~~~l~~~~~~~ 135 (137)
.+-+.|+..|.+.+=+ +. .+.-|.+....+.+.|..+
T Consensus 82 ~lve~lre~G~~~i~v-~~---GGvip~~d~~~l~~~G~~~ 118 (143)
T COG2185 82 GLVEALREAGVEDILV-VV---GGVIPPGDYQELKEMGVDR 118 (143)
T ss_pred HHHHHHHHhCCcceEE-ee---cCccCchhHHHHHHhCcce
Confidence 8888888998876652 22 2223334445555544433
No 87
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.00 E-value=3.5e+02 Score=20.64 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=20.3
Q ss_pred CcEEEEeccCCCCC-----CchhHHHHHHHHHHHcCCCceeE
Q 032577 74 EDLWITSKLWCNNH-----LPEDVPKALDRTLQDLQLDYVDL 110 (137)
Q Consensus 74 ~~~~i~tK~~~~~~-----~~~~i~~~~~~sL~~L~~~~lDl 110 (137)
.++.|..|+.+... +.+.. ..+-+.|+..|+|+|++
T Consensus 207 ~d~~i~vris~~~~~~~g~~~~e~-~~la~~l~~~G~d~i~v 247 (327)
T cd02803 207 PDFPVGVRLSADDFVPGGLTLEEA-IEIAKALEEAGVDALHV 247 (327)
T ss_pred CCceEEEEechhccCCCCCCHHHH-HHHHHHHHHcCCCEEEe
Confidence 46778888854321 22222 33444566778776654
No 88
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=22.57 E-value=2.7e+02 Score=19.18 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=24.7
Q ss_pred CCcEEEEeccCCCCCCchhHHHHHHHHHHHc--CCCceeEEEEeecCC
Q 032577 73 REDLWITSKLWCNNHLPEDVPKALDRTLQDL--QLDYVDLYLVCLYDT 118 (137)
Q Consensus 73 r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L--~~~~lDl~~lH~p~~ 118 (137)
|=-+.|+-|+......+..+++.++++.+.+ .+...|++++-.+..
T Consensus 49 RlG~sVSKKvg~~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~ 96 (145)
T PRK04820 49 RLGLAVSRKVDTRAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAA 96 (145)
T ss_pred EEEEEEeccccCcchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCc
Confidence 4445555555434445566666666666543 223346666666543
No 89
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=22.51 E-value=3.4e+02 Score=20.40 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=29.6
Q ss_pred eeCCCCCccccceeecccCChhHHHHHHHHHHHcCCCeeeCcc
Q 032577 8 FKLNAGAKIPSLGLGTWAAAPDVVGDAIAAAVKVGYRHIDCAQ 50 (137)
Q Consensus 8 ~~l~~g~~v~~lglGt~~~~~~~~~~~l~~a~~~G~~~~Dta~ 50 (137)
.+|+.|.+.+.+-| +.++..++++.-.++|+..|+...
T Consensus 6 ~TLRDG~Q~~~~~~-----s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 6 STLREGEQFANAFF-----DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCCCCcCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 35667777776544 458889999999999999999864
No 90
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=22.35 E-value=3.5e+02 Score=22.76 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=45.6
Q ss_pred CcEEEEeccCCCCCCchhHHHHHHHHHHHcCCCceeE-----EEEeecCCCCchHHHHHHHHHHh
Q 032577 74 EDLWITSKLWCNNHLPEDVPKALDRTLQDLQLDYVDL-----YLVCLYDTIQHLFIFHLLIEVSL 133 (137)
Q Consensus 74 ~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L~~~~lDl-----~~lH~p~~~~~~~~~~~l~~~~~ 133 (137)
..+.+-.++.....+++.. +.+.+.-++.|..++++ +|+||+.-....+.+..+.+.|+
T Consensus 56 ~~~MlRvriPgG~ls~~q~-r~l~~iA~~yg~g~~~iTtRQniQ~hgI~~~d~~~i~~~l~~vgl 119 (510)
T COG0155 56 HAFMLRVRIPGGILSPKQL-RALADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAELASVGL 119 (510)
T ss_pred cceeEEEecCCCccCHHHH-HHHHHHHHHhCCCeEEEeecccceecccccccHHHHHHHHHHcCC
Confidence 5566678886666666554 45666777788899998 99999988888889999988765
No 91
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=22.33 E-value=2.6e+02 Score=18.89 Aligned_cols=71 Identities=17% Similarity=0.044 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHcCCCeeeCcccccCHHHHHHHHHhhhhCCCCC-CCcEEEEeccCCCCCCchhHHHHHHHHHHHcCCCc
Q 032577 29 DVVGDAIAAAVKVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVK-REDLWITSKLWCNNHLPEDVPKALDRTLQDLQLDY 107 (137)
Q Consensus 29 ~~~~~~l~~a~~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~-r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L~~~~ 107 (137)
+.+.++++.|.+.|+..|-+....+. .|+...+. . + +.+-.+..|-....+.. ..++..|++.|++.
T Consensus 23 ~~i~~l~~~ar~~g~pVi~~~~~~~~---~g~~~~~l---~--~~~~~~~vi~K~~~saf~~----t~L~~~L~~~gi~~ 90 (157)
T cd01012 23 NNTVKLAKAAKLLDVPVILTEQYPKG---LGPTVPEL---R--EVFPDAPVIEKTSFSCWED----EAFRKALKATGRKQ 90 (157)
T ss_pred HHHHHHHHHHHhcCCCEEEEeeCCCC---CCCchHHH---H--hhCCCCCceecccccCcCC----HHHHHHHHhcCCCE
Confidence 45778888999999998877543221 12233322 0 1 22333456764333322 35677788888877
Q ss_pred eeEE
Q 032577 108 VDLY 111 (137)
Q Consensus 108 lDl~ 111 (137)
+-+.
T Consensus 91 lii~ 94 (157)
T cd01012 91 VVLA 94 (157)
T ss_pred EEEE
Confidence 6554
No 92
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=22.32 E-value=2.3e+02 Score=18.32 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=34.3
Q ss_pred CCCcEEEEeccCCCCCCchhHHHHHHHHHHHcCC---CceeEEEEeecCCCC
Q 032577 72 KREDLWITSKLWCNNHLPEDVPKALDRTLQDLQL---DYVDLYLVCLYDTIQ 120 (137)
Q Consensus 72 ~r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L~~---~~lDl~~lH~p~~~~ 120 (137)
+|=-+.|+-|+.. .-.+.-+++.+++..+...- ...|++++-.|....
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~ 88 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAE 88 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCccc
Confidence 4555667777654 56778889999888876632 457999999886543
No 93
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=22.04 E-value=3.5e+02 Score=21.57 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=41.8
Q ss_pred CCcEEEEeccCCCCCCchhHHHHHHHHHHHcCCCceeE-----EEEeecCCCCchHHHHHHHHHHhh
Q 032577 73 REDLWITSKLWCNNHLPEDVPKALDRTLQDLQLDYVDL-----YLVCLYDTIQHLFIFHLLIEVSLR 134 (137)
Q Consensus 73 r~~~~i~tK~~~~~~~~~~i~~~~~~sL~~L~~~~lDl-----~~lH~p~~~~~~~~~~~l~~~~~~ 134 (137)
.+.+.+-.|+.....++++++ .+.+.-++.|-+++++ +++||.... -.+.++.+.+.||.
T Consensus 15 ~dg~mvRvr~p~G~lt~~ql~-~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l~~~GL~ 79 (390)
T TIGR02435 15 GDGLLVRVRLPGGRLTPAQAI-GLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQALLAAGLG 79 (390)
T ss_pred CCeeEEEEecCCCccCHHHHH-HHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHHHHCCCC
Confidence 344556677766666666644 4555666777788887 789998777 66778888887763
No 94
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=22.03 E-value=1e+02 Score=19.64 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCeeeCcc
Q 032577 31 VGDAIAAAVKVGYRHIDCAQ 50 (137)
Q Consensus 31 ~~~~l~~a~~~G~~~~Dta~ 50 (137)
..++++.|.+.|++.||-..
T Consensus 116 ~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 116 LWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred HHHHHHHHHHCCCCEEEECC
Confidence 56899999999999999654
No 95
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=21.65 E-value=3e+02 Score=19.42 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=25.2
Q ss_pred chhHHHHHHHHHHHcCCCceeEEEEeecCCCCchHHHHHHH
Q 032577 89 PEDVPKALDRTLQDLQLDYVDLYLVCLYDTIQHLFIFHLLI 129 (137)
Q Consensus 89 ~~~i~~~~~~sL~~L~~~~lDl~~lH~p~~~~~~~~~~~l~ 129 (137)
+...++-+...|++.+....|+.+.|.|+...+..++..+.
T Consensus 124 pGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~~d~~ 164 (185)
T PF03721_consen 124 PGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAIEDFR 164 (185)
T ss_dssp TTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHHHHHH
T ss_pred EeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcchhcc
Confidence 45667777788877764449999999999888777666554
No 96
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=21.62 E-value=1.3e+02 Score=25.26 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=43.9
Q ss_pred EEEEeccCCCCCCchhHHHHHHHHHHHcCCCceeE-----EEEeecCCCCchHHHHHHHHHHhh
Q 032577 76 LWITSKLWCNNHLPEDVPKALDRTLQDLQLDYVDL-----YLVCLYDTIQHLFIFHLLIEVSLR 134 (137)
Q Consensus 76 ~~i~tK~~~~~~~~~~i~~~~~~sL~~L~~~~lDl-----~~lH~p~~~~~~~~~~~l~~~~~~ 134 (137)
+.+-.|++....++++++ .+.+.-++.|..++++ ++|||.....-.+.|+.|.++||.
T Consensus 62 fmvRvripgG~lt~~Ql~-~la~ia~~yg~g~i~lTtRQniQl~gI~~~~l~~v~~~L~~~GL~ 124 (541)
T TIGR02041 62 FMLRCRLPGGVITPKQWL-AIDKFAREYGNGSIRLTTRQTFQFHGILKRNLKAVHQAIHSAGLD 124 (541)
T ss_pred eEEEEecCCcEECHHHHH-HHHHHHHHhCCCeEEEecccceEEcCCChhHHHHHHHHHHHcCCC
Confidence 556677766556665544 4566777888889998 899999877777889999888764
No 97
>PRK12569 hypothetical protein; Provisional
Probab=21.45 E-value=3.7e+02 Score=20.36 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=45.9
Q ss_pred eeecccCCh---hHHHHHHHHHH-HcCCCeeeCcccccCHHHHHHHHHhhhhCCCCCCCcEEEEecc-CC---------C
Q 032577 20 GLGTWAAAP---DVVGDAIAAAV-KVGYRHIDCAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKL-WC---------N 85 (137)
Q Consensus 20 glGt~~~~~---~~~~~~l~~a~-~~G~~~~Dta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~-~~---------~ 85 (137)
+||.|+++. ++....+..|. ..|+ +.|+...+-+.++-. ....+.|-..- +| .
T Consensus 14 sfG~~~~g~~~D~~lmp~ItsaNIACG~-------HAGDp~~M~~tv~lA------~~~~V~IGAHPsyPD~~gFGRr~m 80 (245)
T PRK12569 14 GFGPWRIGDGVDEALMPLISSANIATGF-------HAGDPNIMRRTVELA------KAHGVGIGAHPGFRDLVGFGRRHI 80 (245)
T ss_pred CCCCcCCCCccHHHHHHHhhhHHHhccc-------cCCCHHHHHHHHHHH------HHcCCEeccCCCCCcCCCCCCCCC
Confidence 779998854 55677777773 5553 566777777777654 34445555543 11 2
Q ss_pred CCCchhHHHHHHHHHHHc
Q 032577 86 NHLPEDVPKALDRTLQDL 103 (137)
Q Consensus 86 ~~~~~~i~~~~~~sL~~L 103 (137)
..++++++..+...+..|
T Consensus 81 ~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 81 NASPQELVNDVLYQLGAL 98 (245)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 357888888888777666
No 98
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.42 E-value=3.6e+02 Score=20.28 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHHHcCCCeeeCc----------cccc-CHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCCCCchhHHHH
Q 032577 27 APDVVGDAIAAAVKVGYRHIDCA----------QIYG-NEKGIGSALKKLFDDGVVKREDLWITSKLWCNNHLPEDVPKA 95 (137)
Q Consensus 27 ~~~~~~~~l~~a~~~G~~~~Dta----------~~Yg-~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~~~~~~i~~~ 95 (137)
+.++..++.+.+.++|+..||-. ..|+ +.+.+-+.++.. . ..-++-|.-|+.+.. +.+. .
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~v---r--~~~~~Pv~vKl~~~~---~~~~-~ 170 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAV---K--KATDVPVIVKLTPNV---TDIV-E 170 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHH---H--hccCCCEEEEeCCCc---hhHH-H
Confidence 45777888888888999988751 2343 556666666643 1 111566778875432 2222 3
Q ss_pred HHHHHHHcCCCceeEE
Q 032577 96 LDRTLQDLQLDYVDLY 111 (137)
Q Consensus 96 ~~~sL~~L~~~~lDl~ 111 (137)
+-+.+...|.|.|++.
T Consensus 171 ~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 171 IARAAEEAGADGLTLI 186 (296)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 3345677888887764
No 99
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=21.28 E-value=52 Score=24.61 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=12.0
Q ss_pred HHHHHcCCCceeEEEE
Q 032577 98 RTLQDLQLDYVDLYLV 113 (137)
Q Consensus 98 ~sL~~L~~~~lDl~~l 113 (137)
+.|+.|++||||---+
T Consensus 94 QIlE~l~vDYiDESEv 109 (296)
T KOG1606|consen 94 QILEALGVDYIDESEV 109 (296)
T ss_pred HHHHHhccCccchhhh
Confidence 4578899999996443
No 100
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=21.26 E-value=1.2e+02 Score=18.83 Aligned_cols=20 Identities=15% Similarity=0.317 Sum_probs=15.9
Q ss_pred ChhHHHHHHHHHHHcCCCee
Q 032577 27 APDVVGDAIAAAVKVGYRHI 46 (137)
Q Consensus 27 ~~~~~~~~l~~a~~~G~~~~ 46 (137)
+.+.+.+..+.++++|++.+
T Consensus 71 P~~~a~~~~~~~~~~gIk~i 90 (96)
T PF02629_consen 71 PAEAAQEVADELVEAGIKGI 90 (96)
T ss_dssp -HHHHHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHHHHHcCCCEE
Confidence 67889999999999999854
No 101
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=21.24 E-value=3.2e+02 Score=19.51 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=26.1
Q ss_pred eecccCChhHHHHHHHHHHHcCCCeeeCccccc
Q 032577 21 LGTWAAAPDVVGDAIAAAVKVGYRHIDCAQIYG 53 (137)
Q Consensus 21 lGt~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg 53 (137)
+.+..+++++...+.+.|.++|..++=|+--|.
T Consensus 123 ~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~ 155 (203)
T cd00959 123 LETGLLTDEEIIKACEIAIEAGADFIKTSTGFG 155 (203)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 344445678889999999999999999986664
No 102
>PHA00022 VII minor coat protein
Probab=21.17 E-value=95 Score=15.10 Aligned_cols=14 Identities=36% Similarity=0.899 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhcC
Q 032577 124 IFHLLIEVSLRNCF 137 (137)
Q Consensus 124 ~~~~l~~~~~~~~~ 137 (137)
.+..+.++|+.-||
T Consensus 5 i~q~v~~lglVi~F 18 (28)
T PHA00022 5 IYQVVIALGLVICF 18 (28)
T ss_pred HHHHHHHHhHHHhh
Confidence 35677888998887
No 103
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=21.08 E-value=92 Score=21.72 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=19.0
Q ss_pred CccccceeecccCChhHHHHHHHHHH
Q 032577 14 AKIPSLGLGTWAAAPDVVGDAIAAAV 39 (137)
Q Consensus 14 ~~v~~lglGt~~~~~~~~~~~l~~a~ 39 (137)
+.+|.||-|..+++.+++.+++..++
T Consensus 116 IA~P~lgtG~~g~p~~~~a~~~~~~i 141 (175)
T cd02907 116 IAIPAISSGIFGFPLERCVETIVEAV 141 (175)
T ss_pred EEECCcccCCCCCCHHHHHHHHHHHH
Confidence 55788888888888777766666553
No 104
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.
Probab=20.99 E-value=2e+02 Score=22.82 Aligned_cols=38 Identities=11% Similarity=-0.017 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHcCCC--ceeEEEEeecCCCCchHHHHHH
Q 032577 91 DVPKALDRTLQDLQLD--YVDLYLVCLYDTIQHLFIFHLL 128 (137)
Q Consensus 91 ~i~~~~~~sL~~L~~~--~lDl~~lH~p~~~~~~~~~~~l 128 (137)
.+...+++.|++.|+. -+|.+.+|.|....+...++.+
T Consensus 206 ~~~~~~~~~l~~~g~~~~did~~i~H~p~~~~~~k~~~~~ 245 (379)
T TIGR01835 206 AFENAWNDYAKRTGLSLADFAAFCFHVPFTKMGLKALRHI 245 (379)
T ss_pred HHHHHHHHHHHHhCCCHHHcCEEEECCCCCcHHHHHHHHH
Confidence 3556777777777765 6888999999777666555443
No 105
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=20.83 E-value=1.1e+02 Score=19.58 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCceeEEEEeecCCCCchHHH
Q 032577 94 KALDRTLQDLQLDYVDLYLVCLYDTIQHLFIF 125 (137)
Q Consensus 94 ~~~~~sL~~L~~~~lDl~~lH~p~~~~~~~~~ 125 (137)
+.+.+.++.||++++ |-+|...|...|
T Consensus 35 ~ei~~a~~~LGl~~~-----v~~dk~yPr~~w 61 (93)
T COG1400 35 EEIAEALRELGLKPK-----VERDKKYPRLWW 61 (93)
T ss_pred HHHHHHHHHcCCCee-----echhhcCCCchh
Confidence 456677779999887 655555554444
No 106
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=20.73 E-value=99 Score=24.30 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHcCCCeeeCcc
Q 032577 28 PDVVGDAIAAAVKVGYRHIDCAQ 50 (137)
Q Consensus 28 ~~~~~~~l~~a~~~G~~~~Dta~ 50 (137)
+.....+++.|+++|++++|++.
T Consensus 77 p~~~~~v~~~~i~~g~~yvD~~~ 99 (386)
T PF03435_consen 77 PFFGEPVARACIEAGVHYVDTSY 99 (386)
T ss_dssp GGGHHHHHHHHHHHT-EEEESS-
T ss_pred cchhHHHHHHHHHhCCCeeccch
Confidence 34677899999999999999765
No 107
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=20.72 E-value=1.4e+02 Score=19.07 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHcCCCceeEEEE
Q 032577 90 EDVPKALDRTLQDLQLDYVDLYLV 113 (137)
Q Consensus 90 ~~i~~~~~~sL~~L~~~~lDl~~l 113 (137)
+.|++.+++.|++||++..-+-..
T Consensus 43 ~~Ir~~v~etL~~lgV~~~~v~v~ 66 (92)
T TIGR01608 43 DDIESTVKETLKLLGVENAVVKVV 66 (92)
T ss_pred HHHHHHHHHHHHHcCCceEEEEEE
Confidence 679999999999999887655443
No 108
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.45 E-value=1.8e+02 Score=19.21 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=34.8
Q ss_pred cceeecccCChhHHHHHHHHHHHcCCCeeeCccccc-------------CHHHHHHHHHhhhhCCCCCCCcEEE-EeccC
Q 032577 18 SLGLGTWAAAPDVVGDAIAAAVKVGYRHIDCAQIYG-------------NEKGIGSALKKLFDDGVVKREDLWI-TSKLW 83 (137)
Q Consensus 18 ~lglGt~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg-------------~e~~~G~~l~~~~~~~~~~r~~~~i-~tK~~ 83 (137)
.+|+||-.....+..+.+...+...+...+-...|- +..-+.++|.+...+| -++++| .+-+.
T Consensus 5 lv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G---~~~V~V~Pl~l~ 81 (127)
T cd03412 5 LVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADG---YTEVIVQSLHII 81 (127)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCC---CCEEEEEeCeeE
Confidence 367887532223344445555543333222222332 2455667777665556 334444 44444
Q ss_pred CCCCCchhHHHHHH
Q 032577 84 CNNHLPEDVPKALD 97 (137)
Q Consensus 84 ~~~~~~~~i~~~~~ 97 (137)
+. ...+.+.+.++
T Consensus 82 ~G-~e~~di~~~v~ 94 (127)
T cd03412 82 PG-EEYEKLKREVD 94 (127)
T ss_pred Cc-HHHHHHHHHHH
Confidence 32 22344444333
No 109
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=20.43 E-value=3.7e+02 Score=19.98 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=59.4
Q ss_pred cCChhHHHHHHHHHHHcCCCeeeCccccc-CHHHHHHHHHhhhhCCCCCCCcEEEEeccCCCC---CCchhHHHHHHHHH
Q 032577 25 AAAPDVVGDAIAAAVKVGYRHIDCAQIYG-NEKGIGSALKKLFDDGVVKREDLWITSKLWCNN---HLPEDVPKALDRTL 100 (137)
Q Consensus 25 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg-~e~~~G~~l~~~~~~~~~~r~~~~i~tK~~~~~---~~~~~i~~~~~~sL 100 (137)
|.+..+....+...+..++.....+-.-| +...+ +.+. ..-.+-.+.|.+.... .+.+.+.+.+.+.+
T Consensus 9 QsPR~Dv~p~l~~~l~~~v~i~e~G~LDgls~~eI-~~~a-------P~~ge~vLvTrL~DG~~V~ls~~~v~~~lq~~i 80 (221)
T PF07302_consen 9 QSPRTDVTPELTEILGEGVEIVEAGALDGLSREEI-AALA-------PEPGEYVLVTRLRDGTQVVLSKKKVEPRLQACI 80 (221)
T ss_pred CCCCchhHHHHHHHcCCCceEEEeccCCCCCHHHH-HHhC-------CCCCCceeEEEeCCCCEEEEEHHHHHHHHHHHH
Confidence 44677888889999988888887776666 55555 4443 2344566777874433 47889999999999
Q ss_pred HHcCCCceeEEEEee
Q 032577 101 QDLQLDYVDLYLVCL 115 (137)
Q Consensus 101 ~~L~~~~lDl~~lH~ 115 (137)
++|.-+-+|+.++-.
T Consensus 81 ~~le~~G~d~illlC 95 (221)
T PF07302_consen 81 AQLEAQGYDVILLLC 95 (221)
T ss_pred HHHHHCCCCEEEEec
Confidence 999777777777653
No 110
>PLN02431 ferredoxin--nitrite reductase
Probab=20.41 E-value=1.2e+02 Score=25.93 Aligned_cols=59 Identities=15% Similarity=0.042 Sum_probs=43.1
Q ss_pred cEEEEeccCCCCCCchhHHHHHHHHHHHcCC-CceeE-----EEEeecCCCCchHHHHHHHHHHhh
Q 032577 75 DLWITSKLWCNNHLPEDVPKALDRTLQDLQL-DYVDL-----YLVCLYDTIQHLFIFHLLIEVSLR 134 (137)
Q Consensus 75 ~~~i~tK~~~~~~~~~~i~~~~~~sL~~L~~-~~lDl-----~~lH~p~~~~~~~~~~~l~~~~~~ 134 (137)
.+.+--|+.....++++++ .+.+.-++.|. .++|+ ++|||.....-.+.|+.|.++||.
T Consensus 136 ~fMlRvRiPgG~lt~~Qlr-~la~ia~~yg~~G~i~iTtRqniQl~gI~~ed~p~i~~~L~~vGL~ 200 (587)
T PLN02431 136 RFMMRLKLPNGVTTSAQTR-YLASVIEKYGEDGCADVTTRQNWQIRGVVLPDVPAILKGLEEVGLT 200 (587)
T ss_pred ceEEEEecCCcccCHHHHH-HHHHHHHHhCCCCeEEEecCcceEeCCCCHHHHHHHHHHHHHcCCC
Confidence 3455677755556665544 45566677875 48998 899999877777889999998875
No 111
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=20.37 E-value=49 Score=24.49 Aligned_cols=14 Identities=43% Similarity=0.831 Sum_probs=12.5
Q ss_pred cCCCeeeCcccccC
Q 032577 41 VGYRHIDCAQIYGN 54 (137)
Q Consensus 41 ~G~~~~Dta~~Yg~ 54 (137)
+|.++|+|++.||.
T Consensus 199 ~G~ryF~c~p~yGg 212 (234)
T KOG3206|consen 199 NGKRYFECAPKYGG 212 (234)
T ss_pred cceEeeecCCccCC
Confidence 59999999999983
No 112
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.27 E-value=96 Score=23.22 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHcCCCeeeCccc
Q 032577 29 DVVGDAIAAAVKVGYRHIDCAQI 51 (137)
Q Consensus 29 ~~~~~~l~~a~~~G~~~~Dta~~ 51 (137)
.-+.+-...|+++|++.||++-.
T Consensus 201 GlA~An~laAi~aG~~~iD~s~~ 223 (268)
T cd07940 201 GLAVANSLAAVEAGARQVECTIN 223 (268)
T ss_pred chHHHHHHHHHHhCCCEEEEEee
Confidence 45666777889999999999754
No 113
>COG0432 Uncharacterized conserved protein [Function unknown]
Probab=20.23 E-value=18 Score=24.83 Aligned_cols=8 Identities=63% Similarity=1.149 Sum_probs=6.7
Q ss_pred cceeeccc
Q 032577 18 SLGLGTWA 25 (137)
Q Consensus 18 ~lglGt~~ 25 (137)
++.+||||
T Consensus 108 rL~LGTWQ 115 (137)
T COG0432 108 RLVLGTWQ 115 (137)
T ss_pred eEceeccc
Confidence 67899996
No 114
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=20.21 E-value=2.6e+02 Score=22.12 Aligned_cols=56 Identities=7% Similarity=0.168 Sum_probs=37.4
Q ss_pred cccCChhHHHHHHHHHHHcCCCeee-----------CcccccCHHHHHHHHHhhhhCCCCCCCcEEEEecc
Q 032577 23 TWAAAPDVVGDAIAAAVKVGYRHID-----------CAQIYGNEKGIGSALKKLFDDGVVKREDLWITSKL 82 (137)
Q Consensus 23 t~~~~~~~~~~~l~~a~~~G~~~~D-----------ta~~Yg~e~~~G~~l~~~~~~~~~~r~~~~i~tK~ 82 (137)
..+++.+...+.++.+.+.|++.+- .+..|..+..+-++++..- + .-.++.|.|=+
T Consensus 55 ~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~iK-~---~~pdl~vi~DV 121 (322)
T PRK13384 55 ISRLPESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGLLARMVRTIK-A---AVPEMMVIPDI 121 (322)
T ss_pred cceECHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCChHHHHHHHHH-H---HCCCeEEEeee
Confidence 3456778899999999999999764 2334444567777776541 1 12467777765
Done!