Query 032578
Match_columns 137
No_of_seqs 135 out of 1038
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 2E-50 4.4E-55 281.5 13.0 129 6-135 19-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.3E-48 2.9E-53 277.3 13.7 127 8-135 25-152 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 1.2E-45 2.6E-50 251.9 13.0 130 7-137 23-152 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 2.9E-45 6.2E-50 261.8 15.2 128 7-135 21-148 (152)
5 PLN00172 ubiquitin conjugating 100.0 9E-45 2E-49 258.1 14.8 128 7-135 20-147 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 5.6E-44 1.2E-48 250.0 13.6 122 14-136 32-166 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 5E-42 1.1E-46 237.1 13.0 127 8-135 29-157 (158)
8 KOG0418 Ubiquitin-protein liga 100.0 4.3E-41 9.4E-46 241.7 10.9 129 7-136 25-154 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 4.3E-40 9.3E-45 231.9 11.3 115 15-130 25-140 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 7.1E-39 1.5E-43 226.0 12.8 123 7-130 18-141 (141)
11 KOG0426 Ubiquitin-protein liga 100.0 8.4E-39 1.8E-43 218.6 12.0 122 12-134 29-163 (165)
12 smart00212 UBCc Ubiquitin-conj 100.0 2.6E-38 5.6E-43 224.1 14.8 119 15-134 26-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 2.5E-37 5.4E-42 214.0 9.9 125 7-133 48-172 (175)
14 KOG0416 Ubiquitin-protein liga 100.0 4.2E-37 9.2E-42 218.0 7.9 125 10-135 22-148 (189)
15 KOG0422 Ubiquitin-protein liga 100.0 2.3E-35 4.9E-40 203.1 12.9 122 12-135 27-149 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 5.1E-35 1.1E-39 207.7 10.4 120 12-133 54-173 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 3.1E-31 6.6E-36 188.8 5.0 127 8-135 30-156 (223)
18 KOG0894 Ubiquitin-protein liga 99.9 5.7E-23 1.2E-27 151.0 13.4 90 9-103 26-120 (244)
19 KOG0427 Ubiquitin conjugating 99.9 3E-22 6.4E-27 137.1 9.0 97 13-110 39-137 (161)
20 KOG0429 Ubiquitin-conjugating 99.9 1.8E-21 4E-26 143.6 11.9 120 14-135 45-170 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 1.1E-18 2.5E-23 130.7 8.2 88 9-99 31-121 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 2.1E-16 4.5E-21 137.2 5.9 85 21-106 884-979 (1101)
23 KOG0896 Ubiquitin-conjugating 99.5 1.4E-13 3E-18 94.8 7.8 89 10-99 31-122 (138)
24 KOG0895 Ubiquitin-conjugating 99.3 3.6E-12 7.8E-17 111.2 8.3 86 15-101 309-405 (1101)
25 PF05743 UEV: UEV domain; Int 98.7 9.4E-08 2E-12 65.9 7.4 84 11-100 26-117 (121)
26 PF14461 Prok-E2_B: Prokaryoti 98.7 1.3E-07 2.8E-12 66.1 7.9 67 34-100 34-106 (133)
27 KOG0897 Predicted ubiquitin-co 98.6 6.2E-08 1.4E-12 65.2 5.3 73 38-110 13-89 (122)
28 KOG2391 Vacuolar sorting prote 97.8 7.5E-05 1.6E-09 59.2 6.8 86 11-102 46-139 (365)
29 PF05773 RWD: RWD domain; Int 96.4 0.0086 1.9E-07 39.5 4.9 32 30-61 43-74 (113)
30 smart00591 RWD domain in RING 96.1 0.029 6.2E-07 36.7 6.2 27 34-60 39-65 (107)
31 PF14462 Prok-E2_E: Prokaryoti 94.8 0.32 6.9E-06 33.6 7.9 71 27-99 33-120 (122)
32 PF14457 Prok-E2_A: Prokaryoti 94.4 0.076 1.6E-06 38.4 4.4 61 40-100 57-126 (162)
33 PF08694 UFC1: Ubiquitin-fold 94.0 0.053 1.1E-06 38.3 2.7 65 27-91 56-135 (161)
34 KOG3357 Uncharacterized conser 88.1 0.69 1.5E-05 32.3 3.2 71 13-84 46-128 (167)
35 PF06113 BRE: Brain and reprod 87.5 3 6.6E-05 33.5 7.0 58 32-95 61-121 (333)
36 PF14460 Prok-E2_D: Prokaryoti 85.0 1.4 3.1E-05 32.0 3.7 45 59-106 90-137 (175)
37 TIGR03737 PRTRC_B PRTRC system 80.9 2.7 5.8E-05 32.1 3.9 39 64-106 139-178 (228)
38 KOG4018 Uncharacterized conser 78.0 3.3 7.1E-05 31.3 3.5 20 37-56 50-69 (215)
39 PF09765 WD-3: WD-repeat regio 65.2 2.7 5.9E-05 33.1 0.7 49 36-98 137-186 (291)
40 PF01175 Urocanase: Urocanase; 54.5 18 0.00039 30.9 3.7 30 108-137 271-300 (546)
41 KOG0177 20S proteasome, regula 54.1 3.6 7.8E-05 30.5 -0.4 62 38-99 98-165 (200)
42 KOG0309 Conserved WD40 repeat- 52.6 33 0.00071 31.0 5.1 38 21-60 452-491 (1081)
43 PRK05414 urocanate hydratase; 52.5 20 0.00044 30.6 3.7 31 107-137 280-310 (556)
44 TIGR01228 hutU urocanate hydra 52.1 21 0.00046 30.5 3.7 30 108-137 272-301 (545)
45 COG2987 HutU Urocanate hydrata 47.8 54 0.0012 27.9 5.4 29 109-137 282-310 (561)
46 PF06113 BRE: Brain and reprod 45.7 31 0.00066 27.9 3.6 26 35-60 305-330 (333)
47 cd05845 Ig2_L1-CAM_like Second 44.6 55 0.0012 21.3 4.2 26 33-60 16-41 (95)
48 PF11333 DUF3135: Protein of u 42.2 62 0.0014 20.6 4.1 27 109-135 7-33 (83)
49 PF12018 DUF3508: Domain of un 40.3 48 0.001 25.9 4.0 29 107-135 239-267 (281)
50 PF03366 YEATS: YEATS family; 38.7 1E+02 0.0022 19.5 4.8 42 18-62 2-43 (84)
51 cd00421 intradiol_dioxygenase 38.3 53 0.0011 22.9 3.6 24 35-58 65-89 (146)
52 KOG4445 Uncharacterized conser 35.0 49 0.0011 26.6 3.2 25 36-60 45-69 (368)
53 KOG0662 Cyclin-dependent kinas 34.2 39 0.00084 25.6 2.4 54 50-103 167-224 (292)
54 KOG1047 Bifunctional leukotrie 33.4 46 0.001 28.9 3.0 29 31-60 248-279 (613)
55 cd03457 intradiol_dioxygenase_ 31.9 73 0.0016 23.4 3.6 25 35-59 86-110 (188)
56 COG4079 Uncharacterized protei 29.4 1.8E+02 0.0038 22.8 5.3 55 78-133 139-207 (293)
57 cd03459 3,4-PCD Protocatechuat 28.2 95 0.0021 22.1 3.6 24 35-58 72-100 (158)
58 PF10346 Con-6: Conidiation pr 27.0 1.1E+02 0.0024 16.4 3.9 17 88-104 4-20 (36)
59 KOG0744 AAA+-type ATPase [Post 26.9 60 0.0013 26.7 2.5 76 11-102 167-249 (423)
60 PF02563 Poly_export: Polysacc 26.7 95 0.002 19.2 3.0 36 65-100 34-69 (82)
61 COG2847 Copper(I)-binding prot 24.9 1.5E+02 0.0032 21.3 4.0 26 20-46 105-130 (151)
62 KOG1814 Predicted E3 ubiquitin 24.1 72 0.0016 26.7 2.5 19 40-58 78-97 (445)
63 cd01145 TroA_c Periplasmic bin 23.5 1.5E+02 0.0032 21.6 4.0 47 81-133 111-157 (203)
64 PF06554 Olfactory_mark: Olfac 22.5 2.4E+02 0.0053 19.8 4.6 20 67-86 62-81 (151)
65 COG3101 Uncharacterized protei 22.3 90 0.0019 22.4 2.4 20 117-136 127-146 (180)
66 KOG4278 Protein tyrosine kinas 21.8 83 0.0018 28.4 2.6 61 7-74 175-239 (1157)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-50 Score=281.53 Aligned_cols=129 Identities=37% Similarity=0.702 Sum_probs=126.0
Q ss_pred eeeeecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCcCCCcc
Q 032578 6 IDCLLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIY 85 (137)
Q Consensus 6 ~~~~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~W~p~~ 85 (137)
-+|....+++|++.|+++|. ||.|||||||+|++.|.||++||++||+|+|.|+||||||++.|+||+|+|+..|+|+.
T Consensus 19 ~~~~~~~~~dnl~~w~a~I~-GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk~~WsPAl 97 (148)
T KOG0417|consen 19 PGCSAGPVGDNLFHWQATIL-GPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILKDQWSPAL 97 (148)
T ss_pred CCCccCCCCCceeeEEEEEE-CCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhhccCChhh
Confidence 36888899999999999997 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 032578 86 DVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135 (137)
Q Consensus 86 ~i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~~ 135 (137)
+|..||++|+++|.+|++++|++.++|.+|+.|+++|++.||+|++|+|.
T Consensus 98 ~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 98 TISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred HHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999985
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-48 Score=277.29 Aligned_cols=127 Identities=45% Similarity=0.817 Sum_probs=121.1
Q ss_pred eeecCCcc-eEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCcCCCccC
Q 032578 8 CLLDIKQV-FILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYD 86 (137)
Q Consensus 8 ~~~d~~~~-~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~W~p~~~ 86 (137)
|.+-..++ |+++|++.|. ||++||||||+|++.|.||++||++||+|+|.|+||||||+.+|+||+++|+++|+|.++
T Consensus 25 ~~a~p~~d~~l~~w~~~i~-GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL~~~WsP~~~ 103 (153)
T COG5078 25 ISAGPVDDDNLFHWEATIT-GPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYT 103 (153)
T ss_pred eEEEECCCCcceeEEEEEE-CCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHHhCCCCcccc
Confidence 44444444 9999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 032578 87 VAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135 (137)
Q Consensus 87 i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~~ 135 (137)
+++||.+|+++|.+||.++|+|.+||++|++|+++|.++||+++++++.
T Consensus 104 l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 104 LETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred HHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999875
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-45 Score=251.86 Aligned_cols=130 Identities=69% Similarity=1.054 Sum_probs=124.7
Q ss_pred eeeecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCcCCCccC
Q 032578 7 DCLLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYD 86 (137)
Q Consensus 7 ~~~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~W~p~~~ 86 (137)
+++....++|+++|.+.|+ ||.+|||+||+|++.|.|+++||.+||.|+|.+++|||||+.+|.+|+|+|..+|+|.++
T Consensus 23 gisa~P~~~niM~W~a~I~-Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLqNrWsp~Yd 101 (152)
T KOG0419|consen 23 GISAAPVENNIMEWNAVIF-GPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYD 101 (152)
T ss_pred CccCCCCccceeeeeeeEE-cCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHhcCCCCchh
Confidence 4556778899999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Q 032578 87 VAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 137 (137)
Q Consensus 87 i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~~~~ 137 (137)
+.+||.+||+||.+|++++|+|.|||++|.+|+++|.++|++.+.|+...+
T Consensus 102 va~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~~~ 152 (152)
T KOG0419|consen 102 VASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWSDI 152 (152)
T ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999988653
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.9e-45 Score=261.84 Aligned_cols=128 Identities=32% Similarity=0.586 Sum_probs=122.6
Q ss_pred eeeecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCcCCCccC
Q 032578 7 DCLLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYD 86 (137)
Q Consensus 7 ~~~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~W~p~~~ 86 (137)
+|.+...++|+++|+++|. ||++|||+||.|+++|.||++||++||+|+|.|++|||||+++|.||+++|.++|+|++|
T Consensus 21 ~i~~~~~~~d~~~w~~~i~-GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~t 99 (152)
T PTZ00390 21 GIKAEPDPGNYRHFKILME-GPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQ 99 (152)
T ss_pred CeEEEECCCCccEEEEEEE-cCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCcccCCCCCc
Confidence 3555566789999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 032578 87 VAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135 (137)
Q Consensus 87 i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~~ 135 (137)
+++||++|+++|.+|++++|+|.+||++|++|+++|+++||+|+++++.
T Consensus 100 i~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 100 IRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999875
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=9e-45 Score=258.07 Aligned_cols=128 Identities=41% Similarity=0.750 Sum_probs=122.5
Q ss_pred eeeecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCcCCCccC
Q 032578 7 DCLLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYD 86 (137)
Q Consensus 7 ~~~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~W~p~~~ 86 (137)
+|.+...++|+++|+++|. ||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.||+++|.+.|+|++|
T Consensus 20 ~~~~~~~~~nl~~w~~~i~-GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~~~W~p~~t 98 (147)
T PLN00172 20 NCSAGPSDENLFRWTASII-GPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRDQWSPALT 98 (147)
T ss_pred CeEEEECCCChheEEEEEE-CCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCcCCCCCcCc
Confidence 3556667789999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 032578 87 VAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135 (137)
Q Consensus 87 i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~~ 135 (137)
+++||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++++.
T Consensus 99 i~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 99 VSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999873
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-44 Score=250.01 Aligned_cols=122 Identities=43% Similarity=0.768 Sum_probs=117.5
Q ss_pred cceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCC-------------Cc
Q 032578 14 QVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQ 80 (137)
Q Consensus 14 ~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~-------------~~ 80 (137)
+.|+++|.+.|+ ||++|.|+||.|+..+.||.+||.+||+++|.|++|||||+++|++|+++|. ++
T Consensus 32 ~~dif~WeV~i~-gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~er 110 (171)
T KOG0425|consen 32 DSDIFEWEVAII-GPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSER 110 (171)
T ss_pred CCceeEEEEEEE-cCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhc
Confidence 458999999998 9999999999999999999999999999999999999999999999999992 57
Q ss_pred CCCccCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHhc
Q 032578 81 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 136 (137)
Q Consensus 81 W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~~~ 136 (137)
|.|..|+++||++|.+||.+||.++|+|.+||+.|++++++|.++|++++.++++.
T Consensus 111 W~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~e~ 166 (171)
T KOG0425|consen 111 WLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQEE 166 (171)
T ss_pred cCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998764
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-42 Score=237.14 Aligned_cols=127 Identities=35% Similarity=0.674 Sum_probs=121.1
Q ss_pred eeecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCc--CCCcc
Q 032578 8 CLLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIY 85 (137)
Q Consensus 8 ~~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~--W~p~~ 85 (137)
+.......|++.|+|.| +|++||+||||.|++++.||++||.+||++.|.+++|||||+++|.|||++|.++ |+|+.
T Consensus 29 ~~~~dg~~nl~~Wec~I-PG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~e~~~W~pai 107 (158)
T KOG0424|consen 29 VKNADGTLNLMNWECGI-PGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILNEEKDWRPAI 107 (158)
T ss_pred cCCCCCcceeEEEEeec-CCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhccccCCCchh
Confidence 44455578999999999 6999999999999999999999999999999999999999999999999999865 99999
Q ss_pred CHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 032578 86 DVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135 (137)
Q Consensus 86 ~i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~~ 135 (137)
||.+||.+||+||.+||..+|+|.||...|++|+.+|+++||.++++++.
T Consensus 108 tikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 108 TIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred hHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999875
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-41 Score=241.74 Aligned_cols=129 Identities=29% Similarity=0.643 Sum_probs=122.0
Q ss_pred eeeecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecC-CCcEEeccCCCcCCCcc
Q 032578 7 DCLLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIY 85 (137)
Q Consensus 7 ~~~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~icl~~l~~~W~p~~ 85 (137)
+.+++..++++.+-.++|. ||+|||||||+|.++|++|++|||+||+|+|.|+||||||++ +|.||+|+|+..|.+++
T Consensus 25 ~I~ve~vn~~~~~ikG~I~-GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~sl 103 (200)
T KOG0418|consen 25 GIIVEMVNENLKEIKGHIA-GPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAASL 103 (200)
T ss_pred ceEEEEccCChhhceeEec-CCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchhh
Confidence 4556667788888999995 999999999999999999999999999999999999999975 89999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHhc
Q 032578 86 DVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 136 (137)
Q Consensus 86 ~i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~~~ 136 (137)
|+..+|.+||++|..|++.+|.+.+.|++|.+|++.|.+.||.|+..+|..
T Consensus 104 TlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 104 TLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred hHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998864
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.3e-40 Score=231.91 Aligned_cols=115 Identities=43% Similarity=0.837 Sum_probs=105.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCc-CCCccCHHHHHHH
Q 032578 15 VFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTS 93 (137)
Q Consensus 15 ~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~-W~p~~~i~~il~~ 93 (137)
.++++|+++|. ||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.||+++|..+ |+|++++.+||.+
T Consensus 25 ~~~~~w~~~i~-gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~ 103 (140)
T PF00179_consen 25 DNLFEWHVTIF-GPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILNPESWSPSYTIESILLS 103 (140)
T ss_dssp TETTEEEEEEE-BETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHH
T ss_pred CChheEEEEEe-ccCccceecccccccccccccccccccccccccccccccccccccchhhhhhcccCCcccccccHHHH
Confidence 48999999997 999999999999999999999999999999999999999999999999999854 9999999999999
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHH
Q 032578 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 130 (137)
Q Consensus 94 l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~ 130 (137)
|+++|.+|+.++|+|.+||++|++|+++|+++||+|.
T Consensus 104 i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 104 IQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp HHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred HHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999984
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=7.1e-39 Score=226.02 Aligned_cols=123 Identities=42% Similarity=0.827 Sum_probs=117.0
Q ss_pred eeeecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCc-CCCcc
Q 032578 7 DCLLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIY 85 (137)
Q Consensus 7 ~~~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~-W~p~~ 85 (137)
+|.+...+++++.|+++|. ||++|||+||.|+++|.||++||++||+|+|.++++||||+++|.||++++... |+|++
T Consensus 18 ~~~v~~~~~~~~~w~~~i~-g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~~~~W~p~~ 96 (141)
T cd00195 18 GISAEPVEENLLEWHGTIR-GPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKTHGWSPAY 96 (141)
T ss_pred CeEEEECCCChhEEEEEEe-cCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcCCCCcCCcC
Confidence 4566666779999999997 999999999999999999999999999999999999999999999999999877 99999
Q ss_pred CHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHH
Q 032578 86 DVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 130 (137)
Q Consensus 86 ~i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~ 130 (137)
++.+||.+|+++|.+|+.++|+|.+||.+|++|+++|+++|++++
T Consensus 97 ~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 97 TLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred cHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999874
No 11
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-39 Score=218.56 Aligned_cols=122 Identities=37% Similarity=0.731 Sum_probs=117.4
Q ss_pred CCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCC-------------
Q 032578 12 IKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ------------- 78 (137)
Q Consensus 12 ~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~------------- 78 (137)
.+++|+++|.|.|. ||++|+|+||+|..++.||.+||.+||+++|...+|||||+++|+||+++|.
T Consensus 29 ~~EdnfF~W~cLI~-GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ 107 (165)
T KOG0426|consen 29 INEDNFFEWECLIQ-GPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSA 107 (165)
T ss_pred CCccceeeeeeeee-CCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhh
Confidence 46789999999996 9999999999999999999999999999999999999999999999999992
Q ss_pred CcCCCccCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 032578 79 NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 134 (137)
Q Consensus 79 ~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~ 134 (137)
++|+|.++++.||+++.++|.+||-++++|.+|+.++++||++|++.||..+.|.+
T Consensus 108 ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 108 ERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKTL 163 (165)
T ss_pred hcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 67999999999999999999999999999999999999999999999999999875
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.6e-38 Score=224.09 Aligned_cols=119 Identities=41% Similarity=0.810 Sum_probs=115.5
Q ss_pred ceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCC-CcCCCccCHHHHHHH
Q 032578 15 VFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTS 93 (137)
Q Consensus 15 ~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~-~~W~p~~~i~~il~~ 93 (137)
.++++|+++|. ||++|||+||.|+++|.||++||.+||+|+|.++++||||+++|.||+++|. ++|+|++++.++|.+
T Consensus 26 ~~~~~w~~~i~-gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il~~ 104 (145)
T smart00212 26 DNLLEWTGTIV-GPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQEKWSPATTLETVLLS 104 (145)
T ss_pred CChheEEEEEE-cCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcCCCCCCCCCcHHHHHHH
Confidence 38999999997 9999999999999999999999999999999999999999999999999998 789999999999999
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 032578 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 134 (137)
Q Consensus 94 l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~ 134 (137)
|+++|.+|+.++|+|.+||++|++|++.|+++|+++++|+.
T Consensus 105 i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 105 IQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999873
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-37 Score=213.96 Aligned_cols=125 Identities=38% Similarity=0.701 Sum_probs=118.0
Q ss_pred eeeecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCcCCCccC
Q 032578 7 DCLLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYD 86 (137)
Q Consensus 7 ~~~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~W~p~~~ 86 (137)
++......+|++.|..+|. ||++|+|+|-.|++.+.||.+||++||+|.|+|+.|||||+..|.||+|+|++.|+..++
T Consensus 48 gISAFP~~dnlf~WvGtIt-Gp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~Yd 126 (175)
T KOG0421|consen 48 GISAFPESDNLFKWVGTIT-GPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYD 126 (175)
T ss_pred CcccCcCcCceeEEeeEee-CCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHHHHHh
Confidence 3455667789999999995 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 032578 87 VAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 133 (137)
Q Consensus 87 i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~ 133 (137)
++.||++||++|-+||.++|+|..||+++. |.++|.+.+.+..++.
T Consensus 127 VrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 127 VRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred HHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999998 9999999998877654
No 14
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-37 Score=218.00 Aligned_cols=125 Identities=33% Similarity=0.686 Sum_probs=116.2
Q ss_pred ecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecC-CCcEEeccCCCcCCCccCHH
Q 032578 10 LDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVA 88 (137)
Q Consensus 10 ~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~icl~~l~~~W~p~~~i~ 88 (137)
++..+..+.+++|.+. ||.+|||+||++++++.+|++||++.|+|.|.++||||||+. +|.||++.+...|+|.+.+.
T Consensus 22 V~~ind~m~ef~V~f~-GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yDL~ 100 (189)
T KOG0416|consen 22 VTIINDGMQEFYVKFH-GPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYDLV 100 (189)
T ss_pred EEEecCcccEEEEEee-CCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHHHH
Confidence 3444455778889994 999999999999999999999999999999999999999995 89999999999999999999
Q ss_pred HHHHH-HHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 032578 89 AILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135 (137)
Q Consensus 89 ~il~~-l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~~ 135 (137)
.|+.. |-.||..||+.+|+|.|||.+|.++++.|+++||++++|||.
T Consensus 101 NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 101 NIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred HHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 99976 679999999999999999999999999999999999999985
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-35 Score=203.13 Aligned_cols=122 Identities=23% Similarity=0.598 Sum_probs=116.6
Q ss_pred CCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCC-CcCCCccCHHHH
Q 032578 12 IKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAI 90 (137)
Q Consensus 12 ~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~-~~W~p~~~i~~i 90 (137)
..+.|++.|++.|+ |.+-||..|.|+++|.||.+|||+||++.|.|+||||||++.|.+|++++. +.|.|++++++|
T Consensus 27 ~~e~nll~wt~lli--pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teqV 104 (153)
T KOG0422|consen 27 VDEANLLKWTGLLI--PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQV 104 (153)
T ss_pred cccccceeEEeEec--CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeecccccCcccHHHH
Confidence 35678999999997 899999999999999999999999999999999999999999999999986 679999999999
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 032578 91 LTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135 (137)
Q Consensus 91 l~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~~ 135 (137)
|++|.+++.+|+++.|++.++|..|.+|+..|.++|.++++|+.+
T Consensus 105 lqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 105 LQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred HHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999865
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-35 Score=207.72 Aligned_cols=120 Identities=29% Similarity=0.662 Sum_probs=112.3
Q ss_pred CCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCcCCCccCHHHHH
Q 032578 12 IKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL 91 (137)
Q Consensus 12 ~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~W~p~~~i~~il 91 (137)
..+-+.++.+++|. |..+.|+||.|+|.+.+|+.||+.||+|.|+|++|||||+.+|.||+++|+++|+|..+|.+|+
T Consensus 54 ~~d~~~~~~elti~--PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi 131 (184)
T KOG0420|consen 54 PDDLNNLEFELTIT--PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSII 131 (184)
T ss_pred CcccccceEEEEEc--cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHH
Confidence 33444457999995 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 032578 92 TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 133 (137)
Q Consensus 92 ~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~ 133 (137)
.+|+.+|.+|+++||+|.+||..+++|++.|+.+||+.....
T Consensus 132 ~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg 173 (184)
T KOG0420|consen 132 YGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGG 173 (184)
T ss_pred HHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999976643
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-31 Score=188.83 Aligned_cols=127 Identities=32% Similarity=0.637 Sum_probs=118.1
Q ss_pred eeecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCcCCCccCH
Q 032578 8 CLLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDV 87 (137)
Q Consensus 8 ~~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~W~p~~~i 87 (137)
+-+-.+++++....+.| +||.||||++|+|+..+.+..+||.+||+-.|+|+||||||-.+|.||.+.|+.+|+|..+|
T Consensus 30 IKV~~NeeD~tdiqa~I-eGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLKkDW~p~LGi 108 (223)
T KOG0423|consen 30 IKVVVNEEDFTDIQADI-EGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLKKDWNPSLGI 108 (223)
T ss_pred eEEecChHHhHHHHhhc-cCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhhcccCcccch
Confidence 33445566677777888 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 032578 88 AAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135 (137)
Q Consensus 88 ~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~~~ 135 (137)
..||..|..+|..|++++.+|.+|.+++.++.++|.++||-++.-++.
T Consensus 109 rHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~ 156 (223)
T KOG0423|consen 109 RHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAK 156 (223)
T ss_pred hhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999887654
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.7e-23 Score=151.01 Aligned_cols=90 Identities=28% Similarity=0.551 Sum_probs=80.1
Q ss_pred eecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeec--cccceecCCCcEEeccCC---CcCCC
Q 032578 9 LLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSR--MFHPNIYADGSICLDILQ---NQWSP 83 (137)
Q Consensus 9 ~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPnv~~~G~icl~~l~---~~W~p 83 (137)
......+||++||.++. ||+||||+||.|+.+|.||++||++||.|+++|| .|.+| -++|+++.. +.|+|
T Consensus 26 ~A~P~p~nILEWHYvl~-GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktn----tRLCLSiSDfHPdsWNP 100 (244)
T KOG0894|consen 26 VARPNPNNILEWHYVLR-GPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTN----TRLCLSISDFHPDSWNP 100 (244)
T ss_pred ccCCCccceeeeEEEee-CCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceecC----ceEEEeccccCcCcCCC
Confidence 45677899999999996 9999999999999999999999999999999987 45555 789998874 67999
Q ss_pred ccCHHHHHHHHHHhhcCCCC
Q 032578 84 IYDVAAILTSIQSLLCDPNP 103 (137)
Q Consensus 84 ~~~i~~il~~l~~ll~~p~~ 103 (137)
++++.+||.+|-++|.+..+
T Consensus 101 ~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 101 GWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred cccHHHHHHHHHHHHhcCCC
Confidence 99999999999999886544
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3e-22 Score=137.12 Aligned_cols=97 Identities=33% Similarity=0.651 Sum_probs=86.3
Q ss_pred CcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeecc-ccceecCCCcEEeccCCCcCCCccCHHHHH
Q 032578 13 KQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAIL 91 (137)
Q Consensus 13 ~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnv~~~G~icl~~l~~~W~p~~~i~~il 91 (137)
..+|+-.|.+-+. |.+||.|+|..|.+.++||+.||+..|.|.|.-++ .||+|+++|.||+++|.++|+|++++.+|.
T Consensus 39 v~dnlqqWii~v~-Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvC 117 (161)
T KOG0427|consen 39 VTDNLQQWIIEVT-GAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVC 117 (161)
T ss_pred cccchheeEEEEe-cCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEeecccCCcchhhHHHH
Confidence 4567889999996 99999999999999999999999999999999775 799999999999999999999999999999
Q ss_pred HHHHHhhcCCC-CCCCcCHH
Q 032578 92 TSIQSLLCDPN-PNSPANSE 110 (137)
Q Consensus 92 ~~l~~ll~~p~-~~~p~n~~ 110 (137)
++|-+||++-. -..|.+.+
T Consensus 118 lSIlSMLSSs~eKqrP~Dn~ 137 (161)
T KOG0427|consen 118 LSILSMLSSSKEKQRPTDND 137 (161)
T ss_pred HHHHHHHccCccccCCCccc
Confidence 99999998643 34454433
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.8e-21 Score=143.55 Aligned_cols=120 Identities=24% Similarity=0.423 Sum_probs=107.0
Q ss_pred cceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCC--CCCeeEEeeccccceecC-CCcEEeccCCCcCCCc-cCHHH
Q 032578 14 QVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPN--KPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPI-YDVAA 89 (137)
Q Consensus 14 ~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnv~~-~G~icl~~l~~~W~p~-~~i~~ 89 (137)
--|-+.|.++|+ + ..+.|.||+|+|+|.+|++||. +.|+|.|.+.++||+|.+ ++.+|++-....|+.. .+|.+
T Consensus 45 yan~l~WFGViF-v-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~eWRk~ehhiwq 122 (258)
T KOG0429|consen 45 YANKLLWFGVIF-V-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPEWRKEEHHIWQ 122 (258)
T ss_pred ccccceEEEEEE-E-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhhhhccccHHHH
Confidence 344578999997 5 4677999999999999999995 799999999999999996 7999998776779987 67999
Q ss_pred HHHHHHHhhcCCCCCCC--cCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 032578 90 ILTSIQSLLCDPNPNSP--ANSEAARMFSENKREYNRRVREIVEQSWT 135 (137)
Q Consensus 90 il~~l~~ll~~p~~~~p--~n~~aa~~~~~~~~~f~~~~~~~~~k~~~ 135 (137)
+|..+|.+|++|+...+ .|+|||.+|++++++|.++|+++++.+-+
T Consensus 123 vL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~ 170 (258)
T KOG0429|consen 123 VLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRS 170 (258)
T ss_pred HHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999998655 69999999999999999999999998754
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.1e-18 Score=130.74 Aligned_cols=88 Identities=19% Similarity=0.382 Sum_probs=75.8
Q ss_pred eecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCC---CcCCCcc
Q 032578 9 LLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ---NQWSPIY 85 (137)
Q Consensus 9 ~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~---~~W~p~~ 85 (137)
.....++|+++||++|+ ||.||-||||+|+.+|.||.+||++||.+..+|+- ..+..+.+||+++.. +.|.|++
T Consensus 31 ha~plEdNlFEWhFtiR-Gp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRFE~nkKiCLSISgyHPEtWqPSW 107 (314)
T KOG0428|consen 31 HAQPLEDNLFEWHFTIR-GPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRFEVNKKICLSISGYHPETWQPSW 107 (314)
T ss_pred hhccchhceeeEEEEee-CCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--CceeeCceEEEEecCCCccccCcch
Confidence 34567899999999998 99999999999999999999999999999999872 222234689999875 6799999
Q ss_pred CHHHHHHHHHHhhc
Q 032578 86 DVAAILTSIQSLLC 99 (137)
Q Consensus 86 ~i~~il~~l~~ll~ 99 (137)
+|+..|++|..+|-
T Consensus 108 SiRTALlAlIgFmP 121 (314)
T KOG0428|consen 108 SIRTALLALIGFMP 121 (314)
T ss_pred hHHHHHHHHHcccc
Confidence 99999999988775
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.1e-16 Score=137.19 Aligned_cols=85 Identities=35% Similarity=0.699 Sum_probs=75.1
Q ss_pred EEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeec--cccceecCCCcEEeccCC-------CcCCCccCHHHHH
Q 032578 21 HSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSR--MFHPNIYADGSICLDILQ-------NQWSPIYDVAAIL 91 (137)
Q Consensus 21 ~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPnv~~~G~icl~~l~-------~~W~p~~~i~~il 91 (137)
.+.|. ||+||||..|.|.|++.||++||.+||.+...+. .++||.|.+|+||+++|. +-|+|+.++.++|
T Consensus 884 ~~~~~-g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l 962 (1101)
T KOG0895|consen 884 RAVIV-GAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVL 962 (1101)
T ss_pred HHHhh-CCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHH
Confidence 46676 9999999999999999999999999999999976 689999999999999994 4599999999999
Q ss_pred HHHHHhhcC--CCCCCC
Q 032578 92 TSIQSLLCD--PNPNSP 106 (137)
Q Consensus 92 ~~l~~ll~~--p~~~~p 106 (137)
.+||.|+.+ |.++++
T Consensus 963 ~s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 963 VSIQGLVLNEEPYFNEA 979 (1101)
T ss_pred HHhhhhhcccccccCcc
Confidence 999999874 444443
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.4e-13 Score=94.78 Aligned_cols=89 Identities=18% Similarity=0.384 Sum_probs=76.5
Q ss_pred ecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecC-CCcEEeccC--CCcCCCccC
Q 032578 10 LDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDIL--QNQWSPIYD 86 (137)
Q Consensus 10 ~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~icl~~l--~~~W~p~~~ 86 (137)
.|..+.-+..|...|+ ||+.|+||+.+|.++|...++||..||.++|.+++.-+.|+. +|.|.-..+ -++|...++
T Consensus 31 ~d~~dmtl~rWtg~Ii-GPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~ 109 (138)
T KOG0896|consen 31 EDDDDMTLTRWTGTII-GPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYS 109 (138)
T ss_pred cCCCcceEeeecccee-CCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccch
Confidence 3556667789999998 999999999999999999999999999999999999999975 666655322 278999999
Q ss_pred HHHHHHHHHHhhc
Q 032578 87 VAAILTSIQSLLC 99 (137)
Q Consensus 87 i~~il~~l~~ll~ 99 (137)
+..+|..++.++.
T Consensus 110 ~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 110 IKMVLGQLRKEMM 122 (138)
T ss_pred hhHHHHhhhHHHH
Confidence 9999999986554
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.6e-12 Score=111.24 Aligned_cols=86 Identities=30% Similarity=0.622 Sum_probs=76.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeec---cccceecCCCcEEeccCC-------CcCCCc
Q 032578 15 VFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSR---MFHPNIYADGSICLDILQ-------NQWSPI 84 (137)
Q Consensus 15 ~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~---i~HPnv~~~G~icl~~l~-------~~W~p~ 84 (137)
..+...+..|+ ||.||||++|+|.|+|.||..||..||.+.++|. .+.||.|.+|+||+++|. +.|+|.
T Consensus 309 ~RMd~I~alIi-g~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~ 387 (1101)
T KOG0895|consen 309 GRMDLIKALII-GPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPN 387 (1101)
T ss_pred cccceeeeEEe-cCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCcc
Confidence 34456778887 9999999999999999999999999999999987 689999999999999883 569998
Q ss_pred -cCHHHHHHHHHHhhcCC
Q 032578 85 -YDVAAILTSIQSLLCDP 101 (137)
Q Consensus 85 -~~i~~il~~l~~ll~~p 101 (137)
.+|.++|..||.++.+-
T Consensus 388 ~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 388 GSSLLQVLESIQGLILNE 405 (1101)
T ss_pred ccchhhhhhhhhhhhccc
Confidence 88999999999998754
No 25
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.69 E-value=9.4e-08 Score=65.90 Aligned_cols=84 Identities=19% Similarity=0.424 Sum_probs=60.2
Q ss_pred cCCcceEEEEEEEEecCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeEEeeccc-----cceecCCCcEEeccCCCcCCC
Q 032578 11 DIKQVFILTYHSHISHGKFLILNSSGTFK--LTLQFTEDYPNKPPTVRFVSRMF-----HPNIYADGSICLDILQNQWSP 83 (137)
Q Consensus 11 d~~~~~~~~w~~~i~~Gp~~tpYegg~f~--~~i~fp~~YP~~pP~v~f~t~i~-----HPnv~~~G~icl~~l~~~W~p 83 (137)
|.....++.-.++|- - .|+|..|. +.|.+|.+||.+||.+....... +.+|+++|+|.++.| .+|++
T Consensus 26 ~G~~~~LL~L~Gtip-i----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~ 99 (121)
T PF05743_consen 26 DGSSKLLLCLYGTIP-I----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNP 99 (121)
T ss_dssp TSTEEEEEEEEEEEE-E----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--T
T ss_pred CCChheEEEEecCcc-c----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCC
Confidence 445567778888872 2 38998885 67788999999999997764322 449999999999998 78988
Q ss_pred -ccCHHHHHHHHHHhhcC
Q 032578 84 -IYDVAAILTSIQSLLCD 100 (137)
Q Consensus 84 -~~~i~~il~~l~~ll~~ 100 (137)
..++.+++..+++.|.+
T Consensus 100 ~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 100 PSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp TTS-HHHHHHHHHHCCCH
T ss_pred CCCCHHHHHHHHHHHHhH
Confidence 68899999999988863
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.67 E-value=1.3e-07 Score=66.07 Aligned_cols=67 Identities=33% Similarity=0.662 Sum_probs=59.5
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeEEeecc---ccceecCCCcEEe---ccCCCcCCCccCHHHHHHHHHHhhcC
Q 032578 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRM---FHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCD 100 (137)
Q Consensus 34 egg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnv~~~G~icl---~~l~~~W~p~~~i~~il~~l~~ll~~ 100 (137)
.|+.+.++|.+|+.||..||.|....+. +-|||+.+|.+|+ ...-..|.|...+.++|...+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999888554 6899999999999 66667799999999999999988873
No 27
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=6.2e-08 Score=65.24 Aligned_cols=73 Identities=26% Similarity=0.548 Sum_probs=58.2
Q ss_pred EEEEEEeCCCCCCCCCeeEEeecc-ccceecCCCcEEeccCC-CcCCCccCHHHHHHHHHHhhcCCCC--CCCcCHH
Q 032578 38 FKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNP--NSPANSE 110 (137)
Q Consensus 38 f~~~i~fp~~YP~~pP~v~f~t~i-~HPnv~~~G~icl~~l~-~~W~p~~~i~~il~~l~~ll~~p~~--~~p~n~~ 110 (137)
.-+.+.|+++||+.||.+|...|+ -...|-.+|.||+.+|. ++|+.+++++.+++++.+++..... ..|++.+
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~ 89 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKS 89 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchh
Confidence 346678999999999999987663 34445568999999996 5699999999999999999987654 4566555
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=7.5e-05 Score=59.19 Aligned_cols=86 Identities=17% Similarity=0.410 Sum_probs=65.4
Q ss_pred cCCcceEEEEEEEEecCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeEEeec-----cccceecCCCcEEeccCCCcCCC
Q 032578 11 DIKQVFILTYHSHISHGKFLILNSSGTFK--LTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQNQWSP 83 (137)
Q Consensus 11 d~~~~~~~~w~~~i~~Gp~~tpYegg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HPnv~~~G~icl~~l~~~W~p 83 (137)
|.....++.-.++| -.+|.|..|. +.|.+.+.||..||.+..... -.|-+|+++|.|.+++| .+|.+
T Consensus 46 Dg~s~~ll~~~GTI-----p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~ 119 (365)
T KOG2391|consen 46 DGRSRLLLQLDGTI-----PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDP 119 (365)
T ss_pred CCCccchhhccCcc-----cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCC
Confidence 33444445554444 4578998886 567789999999999966533 13899999999999999 77987
Q ss_pred c-cCHHHHHHHHHHhhcCCC
Q 032578 84 I-YDVAAILTSIQSLLCDPN 102 (137)
Q Consensus 84 ~-~~i~~il~~l~~ll~~p~ 102 (137)
. +++..+++.+.+.|.++.
T Consensus 120 pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 120 PSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred ccchHHHHHHHHHHHhcCCC
Confidence 5 779999999988888644
No 29
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.38 E-value=0.0086 Score=39.54 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=22.9
Q ss_pred CCCCCCCEEEEEEEeCCCCCCCCCeeEEeecc
Q 032578 30 LILNSSGTFKLTLQFTEDYPNKPPTVRFVSRM 61 (137)
Q Consensus 30 ~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i 61 (137)
.+.-....+.+.+.||++||..+|.+...+..
T Consensus 43 ~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 43 FESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp CTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred cccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 34455678999999999999999999876653
No 30
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.08 E-value=0.029 Score=36.70 Aligned_cols=27 Identities=19% Similarity=0.593 Sum_probs=22.3
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeEEeec
Q 032578 34 SSGTFKLTLQFTEDYPNKPPTVRFVSR 60 (137)
Q Consensus 34 egg~f~~~i~fp~~YP~~pP~v~f~t~ 60 (137)
....+.+.+.+|++||..+|.+.+...
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999977653
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.80 E-value=0.32 Score=33.57 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=47.9
Q ss_pred CCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcE--EeccC--------------CCcCCCc-cCHHH
Q 032578 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI--CLDIL--------------QNQWSPI-YDVAA 89 (137)
Q Consensus 27 Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~i--cl~~l--------------~~~W~p~-~~i~~ 89 (137)
+.+.+.|.+..-.+-|.+|+.||..+|.+.+..+-.... ..|.+ |-... ...|+|. -++.+
T Consensus 33 ~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T 110 (122)
T PF14462_consen 33 PLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWT 110 (122)
T ss_pred cCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHH
Confidence 345667999999999999999999999887775532211 11223 22111 2459997 44888
Q ss_pred HHHHHHHhhc
Q 032578 90 ILTSIQSLLC 99 (137)
Q Consensus 90 il~~l~~ll~ 99 (137)
.|..|...|.
T Consensus 111 ~l~~v~~~L~ 120 (122)
T PF14462_consen 111 HLARVEHALA 120 (122)
T ss_pred HHHHHHHHHh
Confidence 8888876654
No 32
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.44 E-value=0.076 Score=38.37 Aligned_cols=61 Identities=25% Similarity=0.448 Sum_probs=46.7
Q ss_pred EEEEeCCCCCCCCCeeEEeeccc---cceecCC-----CcEEeccCC-CcCCCccCHHHHHHHHHHhhcC
Q 032578 40 LTLQFTEDYPNKPPTVRFVSRMF---HPNIYAD-----GSICLDILQ-NQWSPIYDVAAILTSIQSLLCD 100 (137)
Q Consensus 40 ~~i~fp~~YP~~pP~v~f~t~i~---HPnv~~~-----G~icl~~l~-~~W~p~~~i~~il~~l~~ll~~ 100 (137)
+.|.|+.+||..+|.+.+.-+.| +|+++.. ..+|+.--. .+|.+..+++.+|..|..-|.+
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 56889999999999876664433 5777654 679994432 5699999999999999887763
No 33
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.01 E-value=0.053 Score=38.30 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=29.9
Q ss_pred CCCCCCCCCCE----------EEEEEEeCCCCCCCCCeeEEeecc-ccceecCCCcEEeccCC-CcCC---CccCHHHHH
Q 032578 27 GKFLILNSSGT----------FKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQ-NQWS---PIYDVAAIL 91 (137)
Q Consensus 27 Gp~~tpYegg~----------f~~~i~fp~~YP~~pP~v~f~t~i-~HPnv~~~G~icl~~l~-~~W~---p~~~i~~il 91 (137)
.+.||-|.|.+ |.+++.+|..||..||.+....-- --.-.+..|+||++.-. .-|. |.++|...|
T Consensus 56 n~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 56 NKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp -TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 67777777743 345556799999999999754211 01122346999997653 2364 456666554
No 34
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.07 E-value=0.69 Score=32.28 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=42.0
Q ss_pred CcceEEEEEEEEecCCCCCCCCCCE--------EEE--EEEeCCCCCCCCCeeEEeeccc-cceecCCCcEEecc-CCCc
Q 032578 13 KQVFILTYHSHISHGKFLILNSSGT--------FKL--TLQFTEDYPNKPPTVRFVSRMF-HPNIYADGSICLDI-LQNQ 80 (137)
Q Consensus 13 ~~~~~~~w~~~i~~Gp~~tpYegg~--------f~~--~i~fp~~YP~~pP~v~f~t~i~-HPnv~~~G~icl~~-l~~~ 80 (137)
++++--.|.-.- ..+.||-|-|.+ |.| ++.+|-.||...|.+....--- ..-.+..|.||+.- ++.-
T Consensus 46 nk~~d~dwfrle-sn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkpl 124 (167)
T KOG3357|consen 46 NKSNDNDWFRLE-SNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPL 124 (167)
T ss_pred CcccCCcceEec-cCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccchh
Confidence 344444565444 378899998864 344 4456999999999986431100 01123468999953 3444
Q ss_pred CCCc
Q 032578 81 WSPI 84 (137)
Q Consensus 81 W~p~ 84 (137)
|...
T Consensus 125 warn 128 (167)
T KOG3357|consen 125 WARN 128 (167)
T ss_pred hhhc
Confidence 7554
No 35
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=87.50 E-value=3 Score=33.50 Aligned_cols=58 Identities=22% Similarity=0.440 Sum_probs=41.9
Q ss_pred CCCCCEEEEEEEeCCCCCCCCCeeEEe-eccccceecCCCcEEeccCCCcCCCc--cCHHHHHHHHH
Q 032578 32 LNSSGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIYADGSICLDILQNQWSPI--YDVAAILTSIQ 95 (137)
Q Consensus 32 pYegg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPnv~~~G~icl~~l~~~W~p~--~~i~~il~~l~ 95 (137)
||.|...+-+|.|...||..||.+.|. ..-|+|... . +..| .+|++. ..+..++..|.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL~ 121 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISELR 121 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHHH
Confidence 599999999999999999999999997 334788432 1 1223 579875 44666665554
No 36
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=84.95 E-value=1.4 Score=31.99 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=28.1
Q ss_pred ecccc---ceecCCCcEEeccCCCcCCCccCHHHHHHHHHHhhcCCCCCCC
Q 032578 59 SRMFH---PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 106 (137)
Q Consensus 59 t~i~H---Pnv~~~G~icl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p 106 (137)
|+.|| +||+.+|+||+.... .|.......+......|.+....++
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccCC
Confidence 44555 689999999997642 2344444556666666555445444
No 37
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=80.92 E-value=2.7 Score=32.10 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=27.6
Q ss_pred ceecCCCcEEeccCCCcCCCc-cCHHHHHHHHHHhhcCCCCCCC
Q 032578 64 PNIYADGSICLDILQNQWSPI-YDVAAILTSIQSLLCDPNPNSP 106 (137)
Q Consensus 64 Pnv~~~G~icl~~l~~~W~p~-~~i~~il~~l~~ll~~p~~~~p 106 (137)
+||+++|+||+.... .|. .++.+ +....+.|.+-.+..+
T Consensus 139 fNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FTH~ 178 (228)
T TIGR03737 139 FNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFTHP 178 (228)
T ss_pred CccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcccCC
Confidence 588899999997653 554 55666 7777777776555443
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=78.02 E-value=3.3 Score=31.25 Aligned_cols=20 Identities=35% Similarity=0.863 Sum_probs=18.6
Q ss_pred EEEEEEEeCCCCCCCCCeeE
Q 032578 37 TFKLTLQFTEDYPNKPPTVR 56 (137)
Q Consensus 37 ~f~~~i~fp~~YP~~pP~v~ 56 (137)
.+.+.+.++++||..+|-+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 78899999999999999993
No 39
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=65.15 E-value=2.7 Score=33.15 Aligned_cols=49 Identities=22% Similarity=0.475 Sum_probs=32.5
Q ss_pred CEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCcCCC-ccCHHHHHHHHHHhh
Q 032578 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSP-IYDVAAILTSIQSLL 98 (137)
Q Consensus 36 g~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~W~p-~~~i~~il~~l~~ll 98 (137)
..-.++|.+|.+||.++|.+...-++ .+...|.+ ..++.+++...+..+
T Consensus 137 R~H~l~l~l~~~yp~~~p~~~~~~P~--------------~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 137 RQHYLELKLPSNYPFEPPSCSLDLPI--------------PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp EEEEEEEETTTTTTTSEEEECS-TTS---------------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCCCceeeCCCCc--------------chhhhhcccccCHHHHHHHHHHHH
Confidence 55678999999999999976433221 11246888 678888877766554
No 40
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=54.47 E-value=18 Score=30.90 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=25.3
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Q 032578 108 NSEAARMFSENKREYNRRVREIVEQSWTAD 137 (137)
Q Consensus 108 n~~aa~~~~~~~~~f~~~~~~~~~k~~~~~ 137 (137)
-.|+.++..+|++.|.+.|+++..++.++|
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rhv~Am 300 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARHVEAM 300 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 456777778899999999999999988764
No 41
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.09 E-value=3.6 Score=30.52 Aligned_cols=62 Identities=13% Similarity=0.288 Sum_probs=37.5
Q ss_pred EEEEEEeCCCCCCCCCeeEEeecc------ccceecCCCcEEeccCCCcCCCccCHHHHHHHHHHhhc
Q 032578 38 FKLTLQFTEDYPNKPPTVRFVSRM------FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLC 99 (137)
Q Consensus 38 f~~~i~fp~~YP~~pP~v~f~t~i------~HPnv~~~G~icl~~l~~~W~p~~~i~~il~~l~~ll~ 99 (137)
|++.+.+.--=|.+=|...++.-. -+..-.-.+..|++++.+.|+|.+|+++.+.-++.++.
T Consensus 98 yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 98 YQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred ceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 445555433224445665555321 11111124679999999999999999988777665554
No 42
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=52.58 E-value=33 Score=30.99 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=26.8
Q ss_pred EEEEecCCCCCCCCCCEE-EEEEEeCCCCCC-CCCeeEEeec
Q 032578 21 HSHISHGKFLILNSSGTF-KLTLQFTEDYPN-KPPTVRFVSR 60 (137)
Q Consensus 21 ~~~i~~Gp~~tpYegg~f-~~~i~fp~~YP~-~pP~v~f~t~ 60 (137)
.+.+ +|| ..+-.|.+| ++.|.||.+||. .+|+++|..+
T Consensus 452 tvsl-n~p-~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 452 TVSL-NCP-NHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred EEEe-cCC-CCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3444 354 444455555 788999999999 5899999855
No 43
>PRK05414 urocanate hydratase; Provisional
Probab=52.55 E-value=20 Score=30.63 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=26.3
Q ss_pred cCHHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Q 032578 107 ANSEAARMFSENKREYNRRVREIVEQSWTAD 137 (137)
Q Consensus 107 ~n~~aa~~~~~~~~~f~~~~~~~~~k~~~~~ 137 (137)
.-.|+..+.++|++.|.+.|+++..++.++|
T Consensus 280 t~ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am 310 (556)
T PRK05414 280 TLEEAAELRAEDPEEFVKAAKASMARHVEAM 310 (556)
T ss_pred CHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 3467788888999999999999999988764
No 44
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=52.15 E-value=21 Score=30.46 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=25.7
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Q 032578 108 NSEAARMFSENKREYNRRVREIVEQSWTAD 137 (137)
Q Consensus 108 n~~aa~~~~~~~~~f~~~~~~~~~k~~~~~ 137 (137)
-.|+..+..+|++.|.+.|+++..++.++|
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am 301 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAKHVRAM 301 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 467777888899999999999999988764
No 45
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=47.84 E-value=54 Score=27.88 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.1
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Q 032578 109 SEAARMFSENKREYNRRVREIVEQSWTAD 137 (137)
Q Consensus 109 ~~aa~~~~~~~~~f~~~~~~~~~k~~~~~ 137 (137)
.++..+-.+|+++|.+.|++..+++.++|
T Consensus 282 ee~~~lr~~d~~~~~~~a~~sm~~hv~Am 310 (561)
T COG2987 282 EEADELREEDPDKYRKLARASMARHVEAM 310 (561)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 56777778899999999999999988765
No 46
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=45.68 E-value=31 Score=27.90 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.4
Q ss_pred CCEEEEEEEeCCCCCCCCCeeEEeec
Q 032578 35 SGTFKLTLQFTEDYPNKPPTVRFVSR 60 (137)
Q Consensus 35 gg~f~~~i~fp~~YP~~pP~v~f~t~ 60 (137)
+-.|-+.|.+|..||...|.++|++-
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEee
Confidence 34566778889999999999999863
No 47
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=44.58 E-value=55 Score=21.27 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=21.7
Q ss_pred CCCCEEEEEEEeCCCCCCCCCeeEEeec
Q 032578 33 NSSGTFKLTLQFTEDYPNKPPTVRFVSR 60 (137)
Q Consensus 33 Yegg~f~~~i~fp~~YP~~pP~v~f~t~ 60 (137)
-||..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46888888888899999 599999865
No 48
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=42.20 E-value=62 Score=20.65 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=21.9
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 032578 109 SEAARMFSENKREYNRRVREIVEQSWT 135 (137)
Q Consensus 109 ~~aa~~~~~~~~~f~~~~~~~~~k~~~ 135 (137)
.+...++++|+++|++..++.++...+
T Consensus 7 D~L~~LA~~dPe~fe~lr~~~~ee~I~ 33 (83)
T PF11333_consen 7 DELKELAQNDPEAFEQLRQELIEEMIE 33 (83)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 456778899999999999988887554
No 49
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=40.28 E-value=48 Score=25.85 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=26.6
Q ss_pred cCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 032578 107 ANSEAARMFSENKREYNRRVREIVEQSWT 135 (137)
Q Consensus 107 ~n~~aa~~~~~~~~~f~~~~~~~~~k~~~ 135 (137)
.+.+|+..|.++++.|...+.+.++++.+
T Consensus 239 ~s~~aa~~F~~~P~~yi~~v~~~ar~~pe 267 (281)
T PF12018_consen 239 SSREAAYRFAEDPERYIQAVLEKARKNPE 267 (281)
T ss_pred CCHHHHHHHHHCHHHHHHHHHHHHhhCHH
Confidence 78999999999999999999999998754
No 50
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=38.67 E-value=1e+02 Score=19.54 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=29.0
Q ss_pred EEEEEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccc
Q 032578 18 LTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMF 62 (137)
Q Consensus 18 ~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 62 (137)
..|.+.+. |+.+..-..-+=++...+.+.|+. |...+..+-|
T Consensus 2 h~W~v~Vr-~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVR-GLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEE-ECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEE-eCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999997 888776666777888899888877 6666665533
No 51
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=38.34 E-value=53 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.708 Sum_probs=21.1
Q ss_pred CCEEEEEEEeCCCCC-CCCCeeEEe
Q 032578 35 SGTFKLTLQFTEDYP-NKPPTVRFV 58 (137)
Q Consensus 35 gg~f~~~i~fp~~YP-~~pP~v~f~ 58 (137)
.|.|.|.-.+|-.|| ..||-|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 499999999999999 889888666
No 52
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=35.02 E-value=49 Score=26.58 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.2
Q ss_pred CEEEEEEEeCCCCCCCCCeeEEeec
Q 032578 36 GTFKLTLQFTEDYPNKPPTVRFVSR 60 (137)
Q Consensus 36 g~f~~~i~fp~~YP~~pP~v~f~t~ 60 (137)
-.+.+.+..++.||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5677888999999999999998876
No 53
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=34.22 E-value=39 Score=25.55 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=40.6
Q ss_pred CCCCeeEEeeccccceec--CCCcEEeccCCCcC--CCccCHHHHHHHHHHhhcCCCC
Q 032578 50 NKPPTVRFVSRMFHPNIY--ADGSICLDILQNQW--SPIYDVAAILTSIQSLLCDPNP 103 (137)
Q Consensus 50 ~~pP~v~f~t~i~HPnv~--~~G~icl~~l~~~W--~p~~~i~~il~~l~~ll~~p~~ 103 (137)
..||.|-|-.+.|...|+ +-|-|--.+....| .|+..+.+-|..|-.++-.|+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~e 224 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTE 224 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcc
Confidence 468999999999999987 45655445544454 6788899988888888877653
No 54
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=33.39 E-value=46 Score=28.90 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=24.0
Q ss_pred CCCCCCEEEEEEEeCCCCCC---CCCeeEEeec
Q 032578 31 ILNSSGTFKLTLQFTEDYPN---KPPTVRFVSR 60 (137)
Q Consensus 31 tpYegg~f~~~i~fp~~YP~---~pP~v~f~t~ 60 (137)
+||.=|.|-+ +.+|+.||+ +-|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4588888877 457899998 6899999998
No 55
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=31.88 E-value=73 Score=23.44 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.6
Q ss_pred CCEEEEEEEeCCCCCCCCCeeEEee
Q 032578 35 SGTFKLTLQFTEDYPNKPPTVRFVS 59 (137)
Q Consensus 35 gg~f~~~i~fp~~YP~~pP~v~f~t 59 (137)
.|.|.|+-.+|--||..+|=|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4889999999999999999887763
No 56
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.42 E-value=1.8e+02 Score=22.80 Aligned_cols=55 Identities=11% Similarity=0.261 Sum_probs=34.5
Q ss_pred CCcCCCccCHHHHHHHHHHhhcC-----CCCC---------CCcCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 032578 78 QNQWSPIYDVAAILTSIQSLLCD-----PNPN---------SPANSEAARMFSENKREYNRRVREIVEQS 133 (137)
Q Consensus 78 ~~~W~p~~~i~~il~~l~~ll~~-----p~~~---------~p~n~~aa~~~~~~~~~f~~~~~~~~~k~ 133 (137)
+..|.+...+.++...|..+|.. |... .-+++ ++.+.++|-+...+.-++..++.
T Consensus 139 k~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~-~~rl~kkDie~L~k~R~~L~~em 207 (293)
T COG4079 139 KDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDP-VLRLVKKDIETLRKHRRRLAEEM 207 (293)
T ss_pred HhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999998888887763 2211 11333 77777777655544444444443
No 57
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=28.21 E-value=95 Score=22.14 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=20.7
Q ss_pred CCEEEEEEEeCCCCC-----CCCCeeEEe
Q 032578 35 SGTFKLTLQFTEDYP-----NKPPTVRFV 58 (137)
Q Consensus 35 gg~f~~~i~fp~~YP-----~~pP~v~f~ 58 (137)
.|.|.|+-.+|--|| ..||-|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 488999999999999 788888666
No 58
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=27.04 E-value=1.1e+02 Score=16.40 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhcCCCCC
Q 032578 88 AAILTSIQSLLCDPNPN 104 (137)
Q Consensus 88 ~~il~~l~~ll~~p~~~ 104 (137)
..|+.++.+-|.+|+..
T Consensus 4 ~~V~~G~KAal~NPnvS 20 (36)
T PF10346_consen 4 NNVAGGYKAALHNPNVS 20 (36)
T ss_pred HHHHHHHHHHhcCCCcC
Confidence 45778889999999875
No 59
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.95 E-value=60 Score=26.69 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=44.5
Q ss_pred cCCcceEEEEE-EEEecCCCCCCC----CCCEEEEEEEeCCCCCCCCCeeEEeeccccceecCCCcEEeccCCCcCCCcc
Q 032578 11 DIKQVFILTYH-SHISHGKFLILN----SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIY 85 (137)
Q Consensus 11 d~~~~~~~~w~-~~i~~Gp~~tpY----egg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~icl~~l~~~W~p~~ 85 (137)
...+.|+.+|+ ..+.||||||-= ++-.-++.|...+.|+..- +- .|..-.|...|....
T Consensus 167 k~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~-------------li---EinshsLFSKWFsES 230 (423)
T KOG0744|consen 167 KKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ-------------LI---EINSHSLFSKWFSES 230 (423)
T ss_pred cCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce-------------EE---EEehhHHHHHHHhhh
Confidence 34568899997 333379999722 2334567777666665432 10 111112235676654
Q ss_pred C--HHHHHHHHHHhhcCCC
Q 032578 86 D--VAAILTSIQSLLCDPN 102 (137)
Q Consensus 86 ~--i~~il~~l~~ll~~p~ 102 (137)
+ +..++..|+.++.+++
T Consensus 231 gKlV~kmF~kI~ELv~d~~ 249 (423)
T KOG0744|consen 231 GKLVAKMFQKIQELVEDRG 249 (423)
T ss_pred hhHHHHHHHHHHHHHhCCC
Confidence 4 6677788888887765
No 60
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=26.74 E-value=95 Score=19.21 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=23.1
Q ss_pred eecCCCcEEeccCCCcCCCccCHHHHHHHHHHhhcC
Q 032578 65 NIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 100 (137)
Q Consensus 65 nv~~~G~icl~~l~~~W~p~~~i~~il~~l~~ll~~ 100 (137)
-|+++|.|-++.+..==-.+.|+.++=..|...+..
T Consensus 34 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 367899999998854455568888887777766654
No 61
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=24.95 E-value=1.5e+02 Score=21.25 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.7
Q ss_pred EEEEEecCCCCCCCCCCEEEEEEEeCC
Q 032578 20 YHSHISHGKFLILNSSGTFKLTLQFTE 46 (137)
Q Consensus 20 w~~~i~~Gp~~tpYegg~f~~~i~fp~ 46 (137)
+|+.++ |++.-.=+|..|.+++.|-+
T Consensus 105 yHvMlm-~lK~pl~eGd~v~vtL~f~~ 130 (151)
T COG2847 105 YHVMLM-GLKKPLKEGDKVPVTLKFEK 130 (151)
T ss_pred EEEEEe-ccCCCccCCCEEEEEEEEec
Confidence 899998 99988889999999999965
No 62
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.06 E-value=72 Score=26.66 Aligned_cols=19 Identities=32% Similarity=0.833 Sum_probs=13.3
Q ss_pred EEEEeCCCCCC-CCCeeEEe
Q 032578 40 LTLQFTEDYPN-KPPTVRFV 58 (137)
Q Consensus 40 ~~i~fp~~YP~-~pP~v~f~ 58 (137)
+...+|++||. +||++...
T Consensus 78 lkf~LP~~YPs~spP~f~l~ 97 (445)
T KOG1814|consen 78 LKFHLPNDYPSVSPPKFELK 97 (445)
T ss_pred eeeecCCccccCCCCceeee
Confidence 45568999998 57776433
No 63
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.51 E-value=1.5e+02 Score=21.61 Aligned_cols=47 Identities=15% Similarity=0.376 Sum_probs=33.3
Q ss_pred CCCccCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 032578 81 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 133 (137)
Q Consensus 81 W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~k~ 133 (137)
|..-.....+...|...|.+-++ +-+..|++|-++|.++.++.-++.
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~l~~l~~~~ 157 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDP------SEQEEYKENLRVFLAKLNKLLREW 157 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777888888887775443 235678888888888777655544
No 64
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=22.53 E-value=2.4e+02 Score=19.82 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=12.0
Q ss_pred cCCCcEEeccCCCcCCCccC
Q 032578 67 YADGSICLDILQNQWSPIYD 86 (137)
Q Consensus 67 ~~~G~icl~~l~~~W~p~~~ 86 (137)
+..|++.+--.+.-|.|..|
T Consensus 62 ~~pGkvtItgtsQ~WTPDLT 81 (151)
T PF06554_consen 62 DKPGKVTITGTSQLWTPDLT 81 (151)
T ss_dssp SSSEEEEEEEB-TTS-TTTS
T ss_pred CCCCeEEEEeeccccCcchh
Confidence 45577776555566998865
No 65
>COG3101 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.29 E-value=90 Score=22.38 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=17.6
Q ss_pred HCHHHHHHHHHHHHHHHHhc
Q 032578 117 ENKREYNRRVREIVEQSWTA 136 (137)
Q Consensus 117 ~~~~~f~~~~~~~~~k~~~~ 136 (137)
-|+..|.++|++++..+++|
T Consensus 127 pDr~~F~~~V~eqV~~yleq 146 (180)
T COG3101 127 PDRVPFQRRVHEQVMWYLEQ 146 (180)
T ss_pred ccchHHHHHHHHHHHHHHHc
Confidence 37889999999999999875
No 66
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=21.84 E-value=83 Score=28.36 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=39.4
Q ss_pred eeeecCCcceEEEEEEEEecCCCCCCCCCCEEEEEEEeCCCC-CCCCCeeEEeec---cccceecCCCcEEe
Q 032578 7 DCLLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDY-PNKPPTVRFVSR---MFHPNIYADGSICL 74 (137)
Q Consensus 7 ~~~~d~~~~~~~~w~~~i~~Gp~~tpYegg~f~~~i~fp~~Y-P~~pP~v~f~t~---i~HPnv~~~G~icl 74 (137)
.+.+.+.++-...+...++ |+|.+|+.+|.-..+= -+-.-..+|.|- +.|..+..+|-||+
T Consensus 175 SFLVRESEsSpgQ~sISlR-------yeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVHHHStvADGLitt 239 (1157)
T KOG4278|consen 175 SFLVRESESSPGQYSISLR-------YEGRVYHYRINTDNDGKMYVTQESRFRTLAELVHHHSTVADGLITT 239 (1157)
T ss_pred ceEEeeccCCCcceeEEEE-------ecceEEEEEeeccCCccEEEeehhhhhHHHHHHhhccccccceeEe
Confidence 4566667777777777775 9999999999875442 112223344442 44555667898886
Done!