BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032581
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P66065|RL13_MYCTU 50S ribosomal protein L13 OS=Mycobacterium tuberculosis GN=rplM
PE=3 SV=1
Length = 147
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 15 FILSLN-DEMSVS---------YR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F++ +N D++++S YR Y G L +RT+ E M+R P + KA+L MLP+N
Sbjct: 53 FVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPY 89
+L RKLR++ G EHP + PY
Sbjct: 113 RLSRQIQRKLRVYAGPEHPHSAQQPVPY 140
>sp|A5U8B9|RL13_MYCTA 50S ribosomal protein L13 OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=rplM PE=3 SV=1
Length = 147
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 15 FILSLN-DEMSVS---------YR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F++ +N D++++S YR Y G L +RT+ E M+R P + KA+L MLP+N
Sbjct: 53 FVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPY 89
+L RKLR++ G EHP + PY
Sbjct: 113 RLSRQIQRKLRVYAGPEHPHSAQQPVPY 140
>sp|C1AHQ2|RL13_MYCBT 50S ribosomal protein L13 OS=Mycobacterium bovis (strain BCG /
Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplM PE=3 SV=1
Length = 147
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 15 FILSLN-DEMSVS---------YR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F++ +N D++++S YR Y G L +RT+ E M+R P + KA+L MLP+N
Sbjct: 53 FVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPY 89
+L RKLR++ G EHP + PY
Sbjct: 113 RLSRQIQRKLRVYAGPEHPHSAQQPVPY 140
>sp|A1KPD0|RL13_MYCBP 50S ribosomal protein L13 OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=rplM PE=3 SV=1
Length = 147
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 15 FILSLN-DEMSVS---------YR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F++ +N D++++S YR Y G L +RT+ E M+R P + KA+L MLP+N
Sbjct: 53 FVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPY 89
+L RKLR++ G EHP + PY
Sbjct: 113 RLSRQIQRKLRVYAGPEHPHSAQQPVPY 140
>sp|P66066|RL13_MYCBO 50S ribosomal protein L13 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rplM PE=3 SV=1
Length = 147
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 15 FILSLN-DEMSVS---------YR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F++ +N D++++S YR Y G L +RT+ E M+R P + KA+L MLP+N
Sbjct: 53 FVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPY 89
+L RKLR++ G EHP + PY
Sbjct: 113 RLSRQIQRKLRVYAGPEHPHSAQQPVPY 140
>sp|B1MG81|RL13_MYCA9 50S ribosomal protein L13 OS=Mycobacterium abscessus (strain ATCC
19977 / DSM 44196) GN=rplM PE=3 SV=1
Length = 147
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 31 GHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
G L +R++ EQ+E+ PT + KA++ MLP+NKL +RKL+++ G+EHP
Sbjct: 82 GGLSKRSIGEQLEKFPTRTVEKAIVGMLPKNKLGRQIERKLKVYAGAEHP 131
>sp|B2GJ23|RL13_KOCRD 50S ribosomal protein L13 OS=Kocuria rhizophila (strain ATCC 9341 /
DSM 348 / NBRC 103217 / DC2201) GN=rplM PE=3 SV=1
Length = 147
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEP 88
Y G LK + E +E++PT A+ KA+ MLP+NKL + KL+++ G+EHP + +P
Sbjct: 80 YPGGLKSTSYAELLEKNPTRAVEKAIKGMLPKNKLAAQQLSKLKVYAGAEHPHQAQQPKP 139
Query: 89 Y 89
Y
Sbjct: 140 Y 140
>sp|O67722|RL13_AQUAE 50S ribosomal protein L13 OS=Aquifex aeolicus (strain VF5) GN=rplM
PE=3 SV=1
Length = 144
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 36/53 (67%)
Query: 28 RYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
RY G LKERTLK +E P E IR AV RMLP+N+L +KL+++ G EHP
Sbjct: 79 RYPGGLKERTLKWMLENKPEEVIRLAVKRMLPKNRLGHRMLKKLKVYRGPEHP 131
>sp|Q6ANL8|RL13_DESPS 50S ribosomal protein L13 OS=Desulfotalea psychrophila (strain
LSv54 / DSM 12343) GN=rplM PE=3 SV=1
Length = 142
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
YIG +KE + KE +E+ PT+ I KAV MLP+NK+ + +KL+++ G+ HP
Sbjct: 80 YIGGIKETSAKELLEKHPTDLITKAVRGMLPKNKMGRAQLKKLKVYVGAAHP 131
>sp|B2HCZ0|RL13_MYCMM 50S ribosomal protein L13 OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=rplM PE=3 SV=1
Length = 147
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 8 FFILRNLFILSLNDE-----MSVSYR-YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F I+ N +++++E M+ S+ Y G L++R++ E ME+ P + KA++ MLP+N
Sbjct: 53 FVIVINADKVAISNEKLRNKMAYSHSGYPGGLRKRSIGELMEKHPDRVVEKAIVGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHP 80
KL KLR++ G EHP
Sbjct: 113 KLSRQIQSKLRVYAGPEHP 131
>sp|P38014|RL13_MYCLE 50S ribosomal protein L13 OS=Mycobacterium leprae (strain TN)
GN=rplM PE=3 SV=1
Length = 147
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 15 FILSLN-DEMSVS---------YR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F++ +N D++++S YR Y G L++RT+ E M++ P + KA++ MLP+N
Sbjct: 53 FVIVINADKVAISGDKVQHKMVYRHSGYPGGLRKRTIGELMQKHPDRVVEKAIVGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHP 80
KL RKLR++ G +HP
Sbjct: 113 KLSRQIQRKLRVYAGPDHP 131
>sp|B8ZUB9|RL13_MYCLB 50S ribosomal protein L13 OS=Mycobacterium leprae (strain Br4923)
GN=rplM PE=3 SV=1
Length = 147
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 15 FILSLN-DEMSVS---------YR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F++ +N D++++S YR Y G L++RT+ E M++ P + KA++ MLP+N
Sbjct: 53 FVIVINADKVAISGDKVQHKMVYRHSGYPGGLRKRTIGELMQKHPDRVVEKAIVGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHP 80
KL RKLR++ G +HP
Sbjct: 113 KLSRQIQRKLRVYAGPDHP 131
>sp|Q3A3B6|RL13_PELCD 50S ribosomal protein L13 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rplM PE=3 SV=1
Length = 142
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPF-GDRPLE 87
Y G L++ + +E+ P + I+KAV MLP+NKL D RKL+++ GS+HP +PLE
Sbjct: 80 YPGGLRQANAAQMLEKKPEDLIKKAVKGMLPKNKLGRDMFRKLKVYTGSDHPHAAQQPLE 139
>sp|O60118|RM23_SCHPO 54S ribosomal protein L23, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrpl23 PE=3 SV=1
Length = 157
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 31 GHLKERTLKE-QMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPF 81
GHLKE T++E +R + +R+AV MLPRNKL D R ++L I+ G+EHP+
Sbjct: 83 GHLKEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWDRRMKRLYIYDGAEHPY 134
>sp|Q73S31|RL13_MYCPA 50S ribosomal protein L13 OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=rplM PE=3 SV=1
Length = 147
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 25 VSYR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPF 81
++YR Y G L+ RT+ E M++ P + A++ MLP+NKL RKLR++ G EHP
Sbjct: 73 LAYRHSGYPGGLRSRTIGELMQKHPDRVVADAIVGMLPKNKLSRQIQRKLRVYAGPEHPH 132
Query: 82 GDRPLEPY 89
+ PY
Sbjct: 133 TAQQPIPY 140
>sp|A0QKT3|RL13_MYCA1 50S ribosomal protein L13 OS=Mycobacterium avium (strain 104)
GN=rplM PE=3 SV=1
Length = 147
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 25 VSYR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPF 81
++YR Y G L+ RT+ E M++ P + A++ MLP+NKL RKLR++ G EHP
Sbjct: 73 LAYRHSGYPGGLRSRTIGELMQKHPDRVVADAIVGMLPKNKLSRQIQRKLRVYAGPEHPH 132
Query: 82 GDRPLEPY 89
+ PY
Sbjct: 133 TAQQPIPY 140
>sp|A0QSP8|RL13_MYCS2 50S ribosomal protein L13 OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=rplM PE=1 SV=1
Length = 147
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 13/79 (16%)
Query: 15 FILSLN-DEMSVS---------YR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F++ +N D+++VS YR Y G L++RT+ E +E+ PT + A++ MLP N
Sbjct: 53 FVIVINADKIAVSGDKLTKKFAYRHSGYPGGLRKRTIGELLEKHPTRVVENAIIGMLPHN 112
Query: 62 KLRDDRDRKLRIFPGSEHP 80
KL +KL+++ G +HP
Sbjct: 113 KLGRQIQKKLKVYAGPDHP 131
>sp|Q18CJ1|RL13_CLOD6 50S ribosomal protein L13 OS=Clostridium difficile (strain 630)
GN=rplM PE=3 SV=1
Length = 143
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEH 79
Y+G LKE + ++ M++ P E I AV MLP+NKLR +LR+F G+EH
Sbjct: 80 YVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEH 130
>sp|C5C020|RL13_BEUC1 50S ribosomal protein L13 OS=Beutenbergia cavernae (strain ATCC
BAA-8 / DSM 12333 / NBRC 16432) GN=rplM PE=3 SV=1
Length = 147
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 8 FFILRNLFILSLN---DEMSVSYR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F I+ N ++L ++ ++YR Y G LK + E +E+ P A+ KA+ M+P+N
Sbjct: 53 FVIVVNADKVALTGNKEQQKLAYRHSGYPGGLKATSYAELLEKRPERAVEKAIRGMVPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFG 82
L + RKL+++ G+EHP G
Sbjct: 113 SLGRAQMRKLKVYAGAEHPHG 133
>sp|C6C1J9|RL13_DESAD 50S ribosomal protein L13 OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplM PE=3
SV=1
Length = 142
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 13/79 (16%)
Query: 15 FILSLN-DEMSVS---------YRYIGH---LKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F++ LN D++ V+ Y++ H LKERTLK +E+ P I AV MLP+N
Sbjct: 53 FVVVLNADKIKVTGNKMDQKTYYKHTNHPGGLKERTLKVMLEKKPEVVIETAVRGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHP 80
+L +KL+++ G+EHP
Sbjct: 113 RLGKQMIKKLKVYAGTEHP 131
>sp|C5CC33|RL13_MICLC 50S ribosomal protein L13 OS=Micrococcus luteus (strain ATCC 4698 /
DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC
2665 / VKM Ac-2230) GN=rplM PE=3 SV=1
Length = 147
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 5 YVVFFILRNLFILSLNDEMSVSYR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
YV+ + + E +YR Y G LK ++ E +E +P A+ KAV MLP+N
Sbjct: 53 YVIIVNAEKVALTGAKLEKKRAYRHSGYPGGLKSQSYAELLETNPVRAVEKAVKGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHP 80
L + KL+++ G+EHP
Sbjct: 113 SLAAQQLSKLKVYKGAEHP 131
>sp|Q8NST6|RL13_CORGL 50S ribosomal protein L13 OS=Corynebacterium glutamicum (strain
ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB
10025) GN=rplM PE=3 SV=1
Length = 147
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEP 88
Y G LK TL ++ P I +++ M+P NKL +KL +F GSEHP+ + E
Sbjct: 80 YPGGLKSMTLGRSLDLHPERTIEDSIVGMMPHNKLTAASAKKLHVFSGSEHPYAAQKPEA 139
Query: 89 Y 89
Y
Sbjct: 140 Y 140
>sp|A4QBS3|RL13_CORGB 50S ribosomal protein L13 OS=Corynebacterium glutamicum (strain R)
GN=rplM PE=3 SV=1
Length = 147
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEP 88
Y G LK TL ++ P I +++ M+P NKL +KL +F GSEHP+ + E
Sbjct: 80 YPGGLKSMTLGRSLDLHPERTIEDSIVGMMPHNKLTAASAKKLHVFSGSEHPYAAQKPEA 139
Query: 89 Y 89
Y
Sbjct: 140 Y 140
>sp|Q1MQW4|RL13_LAWIP 50S ribosomal protein L13 OS=Lawsonia intracellularis (strain
PHE/MN1-00) GN=rplM PE=3 SV=1
Length = 144
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 5 YVVFFILRNLFILSLNDEMSVSYR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
Y+V + + E YR Y+G LKE TLK +E+ P E + AV MLP+N
Sbjct: 53 YIVVVNCEQIKVTGNKQEQKKYYRHSGYVGGLKETTLKTLLEKKPAEVLIHAVRGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEH 79
+L +KL+++ G EH
Sbjct: 113 RLGRAMLKKLKVYAGPEH 130
>sp|C4XNQ2|RL13_DESMR 50S ribosomal protein L13 OS=Desulfovibrio magneticus (strain ATCC
700980 / DSM 13731 / RS-1) GN=rplM PE=3 SV=1
Length = 142
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
+IG LKE +L++ + + P + IRKAV MLP+N+L +KL+I+ G HP
Sbjct: 80 WIGGLKETSLRDMLAKKPEDVIRKAVRGMLPKNRLGRAMLKKLKIYAGEAHP 131
>sp|A1T551|RL13_MYCVP 50S ribosomal protein L13 OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=rplM PE=3 SV=1
Length = 147
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 8 FFILRNLFILSL-NDEMS--VSYR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F I+ N ++L D+++ +YR Y G L++R++ E +++ PT + A++ MLP N
Sbjct: 53 FVIVINADKIALSGDKLNKKFAYRHSGYPGGLRKRSIGELLQKHPTRVVENAIVGMLPHN 112
Query: 62 KLRDDRDRKLRIFPGSEHP 80
KL +KL+++ G EHP
Sbjct: 113 KLSRQVQKKLKVYAGPEHP 131
>sp|Q1AU63|RL13_RUBXD 50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM
9941 / NBRC 16129) GN=rplM PE=3 SV=2
Length = 143
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEP 88
Y G L+ER+ ++ + + P E +R+AV M+P+ +L + +KLRI+ G EHP + EP
Sbjct: 80 YPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHPHAGQTPEP 139
Query: 89 Y 89
Y
Sbjct: 140 Y 140
>sp|A6W5X0|RL13_KINRD 50S ribosomal protein L13 OS=Kineococcus radiotolerans (strain ATCC
BAA-149 / DSM 14245 / SRS30216) GN=rplM PE=3 SV=1
Length = 147
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 5 YVVFFILRNLFILSLNDEMSVSYR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
YV+ + + + V+YR Y G LK + + +E++P +A+ KA+ M+P+N
Sbjct: 53 YVIIVNAAKVALTGSKRDQKVAYRHSGYPGGLKATSYVDLLEQNPEKAVEKAIRGMIPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPYVM 91
L KL+++ G+EHP + E Y +
Sbjct: 113 SLGRQVLSKLKVYAGAEHPHAAQQPEAYTI 142
>sp|B2V795|RL13_SULSY 50S ribosomal protein L13 OS=Sulfurihydrogenibium sp. (strain
YO3AOP1) GN=rplM PE=3 SV=1
Length = 150
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 31 GHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEP 88
G LK R L+ +E PTEA+ AV RMLP+NKL+ ++L+++ G HP + L+P
Sbjct: 82 GGLKVRNLQWMIEHKPTEALALAVERMLPKNKLQKRYMKRLKLYAGETHPHTAQNLKP 139
>sp|A0PMD1|RL13_MYCUA 50S ribosomal protein L13 OS=Mycobacterium ulcerans (strain Agy99)
GN=rplM PE=3 SV=1
Length = 147
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
Y G L++R++ E ME+ P + KA++ MLP+NKL KLR++ G HP
Sbjct: 80 YPGGLRKRSIGELMEKHPDRVVEKAIVGMLPKNKLSRQIQSKLRVYAGPGHP 131
>sp|B4SLE1|RL13_STRM5 50S ribosomal protein L13 OS=Stenotrophomonas maltophilia (strain
R551-3) GN=rplM PE=3 SV=1
Length = 142
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
YIG+LK +L + +ER P I AV MLP+ L RKL+++ G+EHP
Sbjct: 80 YIGNLKTESLAQALERHPERVIETAVKGMLPKGPLGRQMYRKLKVYAGTEHP 131
>sp|C1B056|RL13_RHOOB 50S ribosomal protein L13 OS=Rhodococcus opacus (strain B4) GN=rplM
PE=3 SV=1
Length = 147
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 13/88 (14%)
Query: 15 FILSLN-DEMSVS---------YRYIGH---LKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F++ +N D++++S Y + GH LK R++ E ++++P + KAV+ MLP+N
Sbjct: 53 FVVIINADKVAISGNKREGKFLYHHSGHPGGLKSRSVGEVLDKNPDRLVEKAVVGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPY 89
KL KL+++ G HP + P+
Sbjct: 113 KLGRAISSKLKVYAGPNHPHAAQQPVPF 140
>sp|Q8FS20|RL13_COREF 50S ribosomal protein L13 OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=rplM PE=3 SV=1
Length = 147
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEP 88
Y G LK TL +E P + +++ M+P NKL +KL +F GSEHP+ + E
Sbjct: 80 YPGGLKSMTLGRSLELHPERVLEESITGMMPHNKLTAASVKKLHVFAGSEHPYAAQKPET 139
Query: 89 Y 89
Y
Sbjct: 140 Y 140
>sp|Q6A6T3|RL13_PROAC 50S ribosomal protein L13 OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=rplM PE=3 SV=1
Length = 147
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 8 FFILRNLFILSLNDEMSV-SYRY-----IGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F ++ N ++L + + S RY G L+ ++ E + ++P A+ +AV M+P+N
Sbjct: 53 FVVVVNASKIALTGKKATDSLRYDHSGRPGGLRVTSIGEMLAKNPRRAVERAVWGMMPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPY 89
KL + +KL+++ G EHP + +PY
Sbjct: 113 KLSRQQLKKLKVYGGPEHPHAAQNPQPY 140
>sp|Q6MQH5|RL13_BDEBA 50S ribosomal protein L13 OS=Bdellovibrio bacteriovorus (strain
ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=rplM PE=3
SV=1
Length = 146
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 28 RYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLE 87
R+ G LKE T + E+D T I +AV MLP NKL K++ + G+EHP +
Sbjct: 79 RFFGSLKEMTAAQAKEKDSTFIIHEAVRGMLPTNKLSRHVIMKMKAYTGAEHPHAAQKPA 138
Query: 88 PYVMPPRR 95
+ +P ++
Sbjct: 139 LFTLPSKK 146
>sp|Q2SRI6|RL13_MYCCT 50S ribosomal protein L13 OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=rplM PE=3 SV=1
Length = 151
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 31 GHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 82
G LK+R++ Q E DPT+ + +A+ MLP+N ++ R L +F GSEHP+
Sbjct: 83 GGLKKRSVSVQRELDPTKILERAIRLMLPKNVQGSNQYRALHVFKGSEHPYA 134
>sp|A1SF27|RL13_NOCSJ 50S ribosomal protein L13 OS=Nocardioides sp. (strain BAA-499 /
JS614) GN=rplM PE=3 SV=1
Length = 147
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 8 FFILRNLFILSLNDEMSVS---YR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F I+ N ++L+ + + + YR Y G L + E +E+D +AI KAV MLP+N
Sbjct: 53 FVIIVNAEKVALSGDKATTKMAYRHSGYPGGLTATPIGEILEKDARKAIEKAVWGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPY 89
KL +KL+++ G HP + P+
Sbjct: 113 KLGRQMLKKLKVYSGPNHPHQAQKATPF 140
>sp|C0QU54|RL13_PERMH 50S ribosomal protein L13 OS=Persephonella marina (strain DSM 14350
/ EX-H1) GN=rplM PE=3 SV=1
Length = 150
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 13/78 (16%)
Query: 15 FILSLN-DEMSVS--------YRYI----GHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F++ LN D+++V+ Y++ G L RTL+ +E P E IR AV RMLP+N
Sbjct: 53 FVIVLNADKITVTGKKLTDKEYKWHTNRPGGLNVRTLQWMLEHKPEEVIRLAVERMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEH 79
KL+ ++L+++ GSEH
Sbjct: 113 KLQKRFMKRLKVYTGSEH 130
>sp|B2FJU4|RL13_STRMK 50S ribosomal protein L13 OS=Stenotrophomonas maltophilia (strain
K279a) GN=rplM PE=3 SV=1
Length = 142
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
YIG+LK +L + +ER P I AV MLP+ L RKL+++ G+EHP
Sbjct: 80 YIGNLKTESLAQALERHPERVIEIAVKGMLPKGPLGRQMYRKLKVYAGTEHP 131
>sp|Q30Y43|RL13_DESDG 50S ribosomal protein L13 OS=Desulfovibrio desulfuricans (strain
G20) GN=rplM PE=3 SV=1
Length = 144
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
Y+G L+E+TL + P A+ AV MLPRN+L +KL+++ GSEHP
Sbjct: 80 YVGGLREQTLANVLATKPERALINAVKGMLPRNRLGRAMLKKLKVYAGSEHP 131
>sp|Q7VIV6|RL13_HELHP 50S ribosomal protein L13 OS=Helicobacter hepaticus (strain ATCC
51449 / 3B1) GN=rplM PE=3 SV=1
Length = 142
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
Y G K +TL+E +E+ P + AV MLP+NKL +KL+++ GSEHP
Sbjct: 81 YFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKNKLGRAMLKKLKVYRGSEHP 132
>sp|A4XBI7|RL13_SALTO 50S ribosomal protein L13 OS=Salinispora tropica (strain ATCC
BAA-916 / DSM 44818 / CNB-440) GN=rplM PE=3 SV=1
Length = 147
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 8 FFILRNLFILSLND---EMSVSYR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F ++ N ++L + ++YR Y G LK+ E + + P AI AV MLP N
Sbjct: 53 FVVIVNAGKVALTGNKRQQKIAYRHSGYPGGLKQLGYDELLTKRPERAIELAVKGMLPHN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPY 89
KL +KL+++ G+EHP G + P+
Sbjct: 113 KLGRKLIKKLKVYAGAEHPHGAQQPVPF 140
>sp|A8M4C0|RL13_SALAI 50S ribosomal protein L13 OS=Salinispora arenicola (strain CNS-205)
GN=rplM PE=3 SV=1
Length = 147
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 8 FFILRNLFILSLND---EMSVSYR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN 61
F ++ N ++L + ++YR Y G LK+ E + + P AI AV MLP N
Sbjct: 53 FVVIVNAGKVALTGNKRQQKIAYRHSGYPGGLKQLGYDELLTKRPERAIELAVKGMLPHN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPY 89
KL +KL+++ G+EHP G + P+
Sbjct: 113 KLGRKLIKKLKVYAGAEHPHGAQQPVPF 140
>sp|C6E4S8|RL13_GEOSM 50S ribosomal protein L13 OS=Geobacter sp. (strain M21) GN=rplM
PE=3 SV=1
Length = 142
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 19 LNDEMSVSYR-YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGS 77
L D++ S+ Y G LKE T + +++ P E ++KAV MLP+NKL +KL+I+ G
Sbjct: 69 LADKVYYSHSSYPGGLKEITAGKLLDKKPEELLKKAVKGMLPKNKLARHMLKKLKIYSGG 128
Query: 78 EHP 80
HP
Sbjct: 129 AHP 131
>sp|Q0S3D9|RL13_RHOSR 50S ribosomal protein L13 OS=Rhodococcus sp. (strain RHA1) GN=rplM
PE=3 SV=1
Length = 147
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 5 YVVFFILRNLFILSLNDEMSVSYRYIGH---LKERTLKEQMERDPTEAIRKAVLRMLPRN 61
+VV + I E Y + GH LK R++ E ++++P + KA++ MLP+N
Sbjct: 53 FVVIINAEKVAISGNKREGKFLYHHSGHPGGLKSRSVGEVLDKNPDRLVEKAIVGMLPKN 112
Query: 62 KLRDDRDRKLRIFPGSEHPFGDRPLEPY 89
KL KL+++ G HP + P+
Sbjct: 113 KLGRAISSKLKVYAGPNHPHAAQQPVPF 140
>sp|B8GNH1|RL13_THISH 50S ribosomal protein L13 OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=rplM PE=3 SV=1
Length = 142
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEH 79
YIGH+K + MER P AI AV MLP+N L +KL+++ G+EH
Sbjct: 80 YIGHMKSMNFNQLMERAPERAIEFAVKGMLPKNPLGRAMFKKLKVYAGTEH 130
>sp|Q2IWN7|RL13_RHOP2 50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain
HaA2) GN=rplM PE=3 SV=1
Length = 154
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 29 YIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
+IG +KERT K +E R P + KAV RM+PR L + LR++PG+EHP
Sbjct: 80 FIGGIKERTAKSILEGRFPERVVEKAVERMIPRGPLGRVQMGNLRVYPGAEHP 132
>sp|B0S3F7|RL13_FINM2 50S ribosomal protein L13 OS=Finegoldia magna (strain ATCC 29328)
GN=rplM PE=3 SV=1
Length = 143
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEH 79
Y G LK T K+ M++DP A+ A++ MLP N L +KLR++ G++H
Sbjct: 80 YAGGLKSITYKDLMQKDPERAVTHAIVGMLPHNSLGRQMAKKLRVYRGADH 130
>sp|A1ATL1|RL13_PELPD 50S ribosomal protein L13 OS=Pelobacter propionicus (strain DSM
2379) GN=rplM PE=3 SV=1
Length = 142
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 31 GHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
G LKE + + +E+ P E I++AV MLP+NKL +KL+I+ GS HP
Sbjct: 82 GGLKEISAGKLLEKKPEELIKRAVKGMLPKNKLSRHMLKKLKIYAGSSHP 131
>sp|A1AXJ2|RL13_RUTMC 50S ribosomal protein L13 OS=Ruthia magnifica subsp. Calyptogena
magnifica GN=rplM PE=3 SV=1
Length = 142
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 82
Y+G+LK K+ + P E I K V MLP+ L D RK+++F GSEH G
Sbjct: 80 YVGNLKSIAFKDLQAKKPEEIINKVVKGMLPKGPLGRDMFRKMKVFAGSEHTHG 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,563,320
Number of Sequences: 539616
Number of extensions: 1874301
Number of successful extensions: 8015
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 7299
Number of HSP's gapped (non-prelim): 763
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)