Query 032581
Match_columns 137
No_of_seqs 155 out of 1091
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00205 ribisomal protein L13 100.0 7.4E-47 1.6E-51 300.2 11.3 135 2-136 52-190 (191)
2 CHL00159 rpl13 ribosomal prote 100.0 1.1E-37 2.4E-42 238.5 9.1 89 2-90 51-142 (143)
3 PRK09216 rplM 50S ribosomal pr 100.0 2.4E-37 5.2E-42 236.7 8.7 91 2-92 50-143 (144)
4 TIGR01066 rplM_bact ribosomal 100.0 7.1E-37 1.5E-41 233.2 8.7 90 2-91 48-140 (140)
5 COG0102 RplM Ribosomal protein 100.0 2.5E-35 5.3E-40 226.4 7.8 89 3-91 51-143 (148)
6 PF00572 Ribosomal_L13: Riboso 100.0 7.5E-35 1.6E-39 218.8 5.4 89 2-90 36-127 (128)
7 TIGR01077 L13_A_E ribosomal pr 100.0 2.5E-33 5.4E-38 214.1 7.9 103 2-108 23-129 (142)
8 PRK06394 rpl13p 50S ribosomal 100.0 5.9E-32 1.3E-36 207.4 7.7 102 2-109 27-134 (146)
9 PTZ00068 60S ribosomal protein 100.0 1.9E-31 4.2E-36 213.7 7.1 100 2-109 28-136 (202)
10 KOG3203 Mitochondrial/chloropl 100.0 8.3E-32 1.8E-36 208.3 4.7 82 2-83 58-142 (165)
11 cd00392 Ribosomal_L13 Ribosoma 100.0 1.4E-30 3.1E-35 192.4 7.7 76 2-77 36-114 (114)
12 KOG3204 60S ribosomal protein 99.7 2.5E-18 5.3E-23 137.4 2.8 102 1-109 29-131 (197)
13 PRK05097 Ter macrodomain organ 27.9 41 0.0009 26.3 1.8 48 43-90 48-97 (150)
No 1
>PLN00205 ribisomal protein L13 family protein; Provisional
Probab=100.00 E-value=7.4e-47 Score=300.24 Aligned_cols=135 Identities=62% Similarity=0.978 Sum_probs=125.9
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
.|||||||||++|+|||+ ++.|++|||||||+++++++++++++|++||++||+||||+|.+|+.+|+||+||+|++
T Consensus 52 ~GD~VVVINAekI~lTG~K~~~K~Y~~htgypGglk~~~~~~~~~r~P~~Il~kAVrGMLPkn~lr~~~~krLkVY~G~~ 131 (191)
T PLN00205 52 DGDICIVLNAKDISVTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVLRMLPRNRLRDDRDRKLRIFAGSE 131 (191)
T ss_pred CCCEEEEEeccEEEEeCChhhcceEEEecCCCCCcccccHHHHhccCHHHHHHHHHHhcCCCCchHHHHHhCCEEECCCC
Confidence 589999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceecCCccccccccccchhHHHhhhHHHHHHhh-HHHhhhhhhhhhhhhc
Q 032581 79 HPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKKAEMQQSN-KDMRKNRKKEVEAEVT 136 (137)
Q Consensus 79 Hph~aQkp~~l~~~p~~~r~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 136 (137)
|||++|+|+++++||+.+|+||++++|+||+||||+||++.. +++.++..++...+.+
T Consensus 132 hp~~~q~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (191)
T PLN00205 132 HPFGDKPLEPFVMPPRQVREMRPRARRAMIRAQKKAEQREQAANEKRKGKKKEVEVEVT 190 (191)
T ss_pred CChhccCCeEecCChHHhhccCchhHHHHHHHHHHHHHHHHHHhhhccccccccccccC
Confidence 999999999999999999999999999999999999998876 6666666666555544
No 2
>CHL00159 rpl13 ribosomal protein L13; Validated
Probab=100.00 E-value=1.1e-37 Score=238.47 Aligned_cols=89 Identities=25% Similarity=0.270 Sum_probs=86.6
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
-||+||||||++|++||+ ++.|++|||||||+++++++++++++|++||++||+||||||.+|+.+|+||+||+|++
T Consensus 51 ~Gd~VVViNa~kv~~TG~K~~~K~y~~htg~pGg~k~~~~~~~~~r~P~~il~~aV~gMLPkn~lgr~~~~rLkvy~G~~ 130 (143)
T CHL00159 51 TGDYVIVINAEKIKVTGNKTSQKFYVRHSGRPGGLKIETFEELQNRLPNRIIEKAVKGMLPKGPLGRKLFTKLKVYKGES 130 (143)
T ss_pred CCCEEEEEecceeEEeCchhhheEEEecCCCCCCcccccHHHHhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCC
Confidence 489999999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccee
Q 032581 79 HPFGDRPLEPYV 90 (137)
Q Consensus 79 Hph~aQkp~~l~ 90 (137)
|||+||+|+.++
T Consensus 131 hph~aq~p~~~~ 142 (143)
T CHL00159 131 HPHVAQKPIKIN 142 (143)
T ss_pred CCccccCCeecC
Confidence 999999999875
No 3
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=100.00 E-value=2.4e-37 Score=236.75 Aligned_cols=91 Identities=27% Similarity=0.406 Sum_probs=88.0
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
-||||||||||+|+|||+ ++.||+|||||||+++++++++++++|++||++||+||||||.+|+.+|+||+||+|++
T Consensus 50 ~Gd~VvViNa~ki~~tG~k~~~k~y~~htg~pGglk~~~~~~~~~r~P~~il~~aVrgMLPkn~lgr~~~~rLkvy~G~~ 129 (144)
T PRK09216 50 TGDFVIVINAEKVKLTGKKLTDKIYYRHSGYPGGLKEITFGELLAKKPERVIEKAVKGMLPKNPLGRAMFKKLKVYAGAE 129 (144)
T ss_pred CCCEEEEEeCceeEEcCchHhheeeEEecccCCCCEEecHHHHhhhCHHHHHHHHHHhcCCCCccHHHHHhCcEEeCCCC
Confidence 489999999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceecC
Q 032581 79 HPFGDRPLEPYVMP 92 (137)
Q Consensus 79 Hph~aQkp~~l~~~ 92 (137)
|||++|+|+.+++.
T Consensus 130 hp~~~q~p~~~~~~ 143 (144)
T PRK09216 130 HPHAAQQPEVLEIK 143 (144)
T ss_pred CCccccCCEecccC
Confidence 99999999988753
No 4
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type. This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.
Probab=100.00 E-value=7.1e-37 Score=233.18 Aligned_cols=90 Identities=28% Similarity=0.419 Sum_probs=87.0
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
-||+|||||||+|+|||+ ++.|++|||||||+++++++++++++|++||++||+||||||.+|+.+|+||+||+|++
T Consensus 48 ~Gd~VvViNa~ki~~tG~k~~~k~y~~htg~pgg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkvy~G~~ 127 (140)
T TIGR01066 48 CGDYVIVINAEKVRLTGKKLEQKVYYRHSGYPGGLKSRTFEEMIARKPERVLEHAVKGMLPKNRLGRKLFKKLKVYAGSE 127 (140)
T ss_pred CCCEEEEEeccEEEEeCchhhceeeEEEcccCCccccccHHHhhhcCHHHHHHHHHHhcCCCCccHHHHHhCeEEeCCCC
Confidence 489999999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceec
Q 032581 79 HPFGDRPLEPYVM 91 (137)
Q Consensus 79 Hph~aQkp~~l~~ 91 (137)
|||++|+|+.+++
T Consensus 128 hp~~~q~p~~~~~ 140 (140)
T TIGR01066 128 HPHEAQKPIVLDI 140 (140)
T ss_pred CChhhcCCeecCC
Confidence 9999999988753
No 5
>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-35 Score=226.44 Aligned_cols=89 Identities=25% Similarity=0.405 Sum_probs=85.2
Q ss_pred CcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhh-cChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 3 SIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 3 ~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~-r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
||+|||||||+|+|||+ ++.||+|||||||+++.+++.+.. +.|++||++||+||||||++||++|+||+||.|++
T Consensus 51 Gd~ViVINAeKv~iTG~K~~~k~yy~hs~~~gglk~~t~~~~~~~r~P~ri~~~AVrGMLPk~~lGr~~~krLkVy~G~~ 130 (148)
T COG0102 51 GDYVIVINAEKVVITGKKLTDKKYYRHSGYPGGLKNPTRGGPLAPRRPERILERAVRGMLPKNPLGRAALKRLKVYAGIP 130 (148)
T ss_pred CCEEEEEeceeeEEecccccceEEEEeeccCCcccccccccccccCCHHHHHHHHHhccCCCChhHHHHHhCceEecCCC
Confidence 79999999999999999 889999999999999999977777 99999999999999999999999999999999999
Q ss_pred CCCCCCCccceec
Q 032581 79 HPFGDRPLEPYVM 91 (137)
Q Consensus 79 Hph~aQkp~~l~~ 91 (137)
|||.+|+|+.+++
T Consensus 131 h~~~aq~p~~l~~ 143 (148)
T COG0102 131 HPHEAQKPEALEL 143 (148)
T ss_pred Cccccccchhhhh
Confidence 9999999998764
No 6
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....
Probab=100.00 E-value=7.5e-35 Score=218.80 Aligned_cols=89 Identities=27% Similarity=0.411 Sum_probs=86.6
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
.||+|||||||+|+|||+ ++.|++|||||||++..+++++++++|++||++||+||||+|.+|+.+|+||+||+|++
T Consensus 36 ~Gd~VvViNae~i~~tG~k~~~k~y~~h~~~~g~~~~~~~~~~~~~~P~~i~~~aVrgMLP~n~~g~~~l~rL~vy~g~~ 115 (128)
T PF00572_consen 36 CGDHVVVINAEKIVLTGKKWRQKVYYRHTGYPGGLKNPTAKGLHEKDPSRILKRAVRGMLPKNKLGREALKRLKVYPGEP 115 (128)
T ss_dssp TTEEEEEECGGGBEESSHHHHHHHHHHEHSSSTSCEEEECHHHHCSSHHHHHHHHHHTTSTTSHHHHHHHTTEEEESSSS
T ss_pred CCCEEEEEcCeeeEecCCeecceEEEeecccchhhcccchhhhhhcCHHHHHHHHHHHHCCCChhhhHHhhceEEECCCC
Confidence 589999999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccee
Q 032581 79 HPFGDRPLEPYV 90 (137)
Q Consensus 79 Hph~aQkp~~l~ 90 (137)
|||++|+|+.++
T Consensus 116 hp~~~~~~~~~~ 127 (128)
T PF00572_consen 116 HPHAAQKPVVLE 127 (128)
T ss_dssp CSTTSSSCBEEE
T ss_pred CChhccCCEeCC
Confidence 999999999886
No 7
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=100.00 E-value=2.5e-33 Score=214.07 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=91.8
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCC-hhHHHHhccceeeCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN-KLRDDRDRKLRIFPGS 77 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn-~lGr~~lkrLkVy~G~ 77 (137)
-||||||||||+|.+||+ ++.||+||+++|+....+++++++++|++||++||+||||+| .+|+.+|+||+||+|+
T Consensus 23 ~Gd~VvViNaeki~~TG~k~~~k~~y~~~~~~g~~~~~~~~~~~~r~P~~il~~aVrGMLPk~~~~Gr~~~krLkvy~G~ 102 (142)
T TIGR01077 23 NGEKVVVVNAEKIVISGNFYRNKLKYKEFLRKRTLTNPRRGPFFPRAPSRIFRRTVRGMLPHKTARGRAALRRLKVYVGI 102 (142)
T ss_pred cCCEEEEEechHheecCchhhheeEEEEECCCCCcccCCHHHhhhcCHHHHHHHHHHHhCCCCChhHHHHHhCcEEecCC
Confidence 489999999999999999 789999996555554448899999999999999999999986 8999999999999999
Q ss_pred CCCCCCCCccceecCCccccccccccchhHH
Q 032581 78 EHPFGDRPLEPYVMPPRRVRELRPRVRRAMI 108 (137)
Q Consensus 78 ~Hph~aQkp~~l~~~p~~~r~~~~~~~r~~~ 108 (137)
+|||++|+|+.+ |.++ ..++.+.|.++
T Consensus 103 ~h~~~~qk~~~~---~~a~-~~~~~~~~~~~ 129 (142)
T TIGR01077 103 PPELDKKKRVVV---PEAL-VSRLSPTRKYV 129 (142)
T ss_pred CCCccccCcccc---Chhh-hhccCCCCceE
Confidence 999999999987 5666 78888888664
No 8
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed
Probab=99.97 E-value=5.9e-32 Score=207.40 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=89.5
Q ss_pred CCcEEEEEeccceEeecC-CceeEEecCccCccccc----ChhHHhhcChhHHHHHHHHccCC-CChhHHHHhccceeeC
Q 032581 2 ISIYVVFFILRNLFILSL-NDEMSVSYRYIGHLKER----TLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFP 75 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~-~k~Y~~hsgypGGlk~~----t~~~~~~r~P~~Il~rAVrGMLP-Kn~lGr~~lkrLkVy~ 75 (137)
-|||||||||++|++||+ .+.|++|++|+ |++.. +++++++++|++||++||+|||| ||.+|+.+|+||+||+
T Consensus 27 ~Gd~VVViNa~kv~~tG~K~~~~~~y~~~~-~~k~~~np~~~~~~~~r~P~~il~~AV~gMLP~kn~~gr~~~~rLkvy~ 105 (146)
T PRK06394 27 EGEEVVIVNAEKAVITGNRERVIEKYKQRR-ERGSHYNPYRNGPKYPRRPDRIFKRTIRGMLPYKKPRGREALKRLKVYV 105 (146)
T ss_pred CCCEEEEEechheEecCchhhheeeEeCCC-CCcccCCCCChHHhhhcCHHHHHHHHHHhcCCCCChhHHHHHhCcEEec
Confidence 389999999999999999 67799999998 68877 78999999999999999999999 8999999999999999
Q ss_pred CCCCCCCCCCccceecCCccccccccccchhHHH
Q 032581 76 GSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIR 109 (137)
Q Consensus 76 G~~Hph~aQkp~~l~~~p~~~r~~~~~~~r~~~~ 109 (137)
|++|||++|+|+.+++ +.. .++. +|.|+.
T Consensus 106 G~~h~~~~qkp~~~~~---a~~-~~~~-~~k~~~ 134 (146)
T PRK06394 106 GVPKELEGKEFEVIDE---ADL-SRLS-TIKYVT 134 (146)
T ss_pred CCCCCcccCCCEEecH---HHH-hccC-CCCcEE
Confidence 9999999999999865 333 2554 465553
No 9
>PTZ00068 60S ribosomal protein L13a; Provisional
Probab=99.97 E-value=1.9e-31 Score=213.71 Aligned_cols=100 Identities=22% Similarity=0.299 Sum_probs=92.1
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccC-----hhHHhhcChhHHHHHHHHccCCC-ChhHHHHhccce
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERT-----LKEQMERDPTEAIRKAVLRMLPR-NKLRDDRDRKLR 72 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t-----~~~~~~r~P~~Il~rAVrGMLPK-n~lGr~~lkrLk 72 (137)
-||+|||||||+|+|||+ ++.||+| |++..+ .++++++.|++||++||+||||+ |++|+.+|+||+
T Consensus 28 ~Gd~VVVVNaeki~iTG~k~~~K~~y~~-----~lk~~~~~nP~~g~~~~r~P~~Il~raVrGMLPkk~~~Gr~alkrLk 102 (202)
T PTZ00068 28 LGQKIVVVRCEDLNISGSLFRNKVKYEE-----FLRKRMNTNPRRGPFHHRAPSDIFWRTVRGMLPHKTKRGAAALKRLK 102 (202)
T ss_pred CCCEEEEEecceeEeecchhhheeeeEe-----eeEeeccCCCCcchhcccCHHHHHHHHHhhhCCCCChhHHHHHhCCE
Confidence 489999999999999999 8899998 466666 48999999999999999999995 999999999999
Q ss_pred eeCCCCCCCCCCCccceecCCccccccccccchhHHH
Q 032581 73 IFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIR 109 (137)
Q Consensus 73 Vy~G~~Hph~aQkp~~l~~~p~~~r~~~~~~~r~~~~ 109 (137)
||+|+||||++++++++ |+++|..|++|+|.||.
T Consensus 103 Vy~G~php~~~~k~~vv---p~A~r~~rl~~~~ky~~ 136 (202)
T PTZ00068 103 VFEGVPAPYDKVKRVVI---PSALRVLRLKPERPYTV 136 (202)
T ss_pred EecCCCCchhccCcccc---cchhhhhccCCCCceee
Confidence 99999999999999876 89999999999997763
No 10
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8.3e-32 Score=208.33 Aligned_cols=82 Identities=33% Similarity=0.452 Sum_probs=78.6
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
-||||||+||++|.+||+ +++|++|||||||++.+++++++.++|++|+++||+||||||.||+.+|++|+||+|++
T Consensus 58 cGD~VVV~N~~~Ia~sG~K~~qk~Y~~HsGyPG~lk~~~~~q~~~rdp~~Iv~~AV~gMLPkN~Lrr~~~~rL~lf~g~e 137 (165)
T KOG3203|consen 58 CGDHVVVTNCKKIAFSGKKWEQKIYRSHSGYPGGLKQTTADQLADRDPCRIVRLAVYGMLPKNLLRRRRMQRLHLFPGEE 137 (165)
T ss_pred CCCEEEEecchhheeccchhhhhhhhhcCCCCCchhhhHHHHHhhhCHHHHHHHHHHhhCccchHHHHHhheeeccCCcc
Confidence 389999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 032581 79 HPFGD 83 (137)
Q Consensus 79 Hph~a 83 (137)
||+..
T Consensus 138 ~p~~~ 142 (165)
T KOG3203|consen 138 HPEKV 142 (165)
T ss_pred Cchhh
Confidence 99443
No 11
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=99.97 E-value=1.4e-30 Score=192.40 Aligned_cols=76 Identities=28% Similarity=0.399 Sum_probs=74.1
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGS 77 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~ 77 (137)
.||||||||||+|++||+ ++.|++||+||||++..+++++++++|++||++||+||||||.+|+.+|+||+||+|+
T Consensus 36 ~Gd~VvViNa~~i~~tG~k~~~k~y~~~~~~~g~~~~~~~~~~~~~~P~~il~~aV~gMLPkn~~g~~~l~rLkvy~g~ 114 (114)
T cd00392 36 CGDYVVVVNAEKIVITGKKWRQKVYYRHTGYPGGLKNPTAGPLHPRAPERILKRAVRGMLPKNKLGRAALKRLKVYEGA 114 (114)
T ss_pred CCCEEEEEeccEEEEeCchhhccceEEeccCCCCCccCCcchhhhhCHHHHHHHHHHhcCCCChhHHHHHhCcEEeCCC
Confidence 489999999999999999 8899999999999999999999999999999999999999999999999999999985
No 12
>KOG3204 consensus 60S ribosomal protein L13a [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2.5e-18 Score=137.37 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=89.4
Q ss_pred CCCcEEEEEeccceEeecCCceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCC-CChhHHHHhccceeeCCCCC
Q 032581 1 MISIYVVFFILRNLFILSLNDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEH 79 (137)
Q Consensus 1 ~~~~~VVVVNaekI~isG~~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLP-Kn~lGr~~lkrLkVy~G~~H 79 (137)
|-|..||||.||.|+|||+ |+++.+|-+-.--+. +++|.+-|++||+++|+||+| +++.|+.++++|.+|.|.++
T Consensus 29 l~g~kvvvvr~E~i~isg~---f~r~k~~lrk~~~~n-g~~hfr~ps~i~~~~vrgm~~~kt~rg~aal~~l~~~eGip~ 104 (197)
T KOG3204|consen 29 LLGRKVVVVRCEEINISGN---FYRNKLFLRKRLNRN-GPFHFRAPSRILQKAVRGMYPHKTKRGRAALERLRVFEGIPP 104 (197)
T ss_pred hcCCeEEEEEEeEEEEecc---eecchHHHhhhhccc-CcchhhhHHHHHHHhhccccccCCCccHHHHHHHHHhCCCCC
Confidence 3578999999999999999 888776654322222 899999999999999999999 79999999999999999999
Q ss_pred CCCCCCccceecCCccccccccccchhHHH
Q 032581 80 PFGDRPLEPYVMPPRRVRELRPRVRRAMIR 109 (137)
Q Consensus 80 ph~aQkp~~l~~~p~~~r~~~~~~~r~~~~ 109 (137)
|++.|++.+ .|.++++++++|+|.||.
T Consensus 105 ~~dk~~r~v---~p~a~~v~~lk~~~K~c~ 131 (197)
T KOG3204|consen 105 PYDKQKRLV---VPVAFQVLRLKPYKKYCL 131 (197)
T ss_pred hhhhcCCcc---CCcceeeecccCCceeEE
Confidence 999999854 699999999999999875
No 13
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=27.91 E-value=41 Score=26.32 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=39.8
Q ss_pred hcChhHHHHHHHHccCC--CChhHHHHhccceeeCCCCCCCCCCCcccee
Q 032581 43 ERDPTEAIRKAVLRMLP--RNKLRDDRDRKLRIFPGSEHPFGDRPLEPYV 90 (137)
Q Consensus 43 ~r~P~~Il~rAVrGMLP--Kn~lGr~~lkrLkVy~G~~Hph~aQkp~~l~ 90 (137)
+..|..|+++.=.-|-| -|++....-.|=+=|-+++|.|..++.+.|+
T Consensus 48 e~~P~~v~~WI~~hm~p~l~nklkQaIRArRKRhFNAE~qhTrKKSIDLe 97 (150)
T PRK05097 48 ENEPVKVLEWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLE 97 (150)
T ss_pred ccCcHHHHHHHHHhcCHHHHHHHHHHHHHHHHccCCcccccccccCcccc
Confidence 46799999999999999 5888777666677777899999998887664
Done!