Query 032581
Match_columns 137
No_of_seqs 155 out of 1091
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:42:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_N 50S ribosomal protein L 100.0 1E-39 3.6E-44 247.8 7.2 90 2-91 48-140 (140)
2 3r8s_J 50S ribosomal protein L 100.0 2.4E-39 8.1E-44 246.3 6.5 90 2-91 50-142 (142)
3 3f1f_N 50S ribosomal protein L 100.0 7.5E-39 2.6E-43 248.2 6.5 90 2-91 71-163 (163)
4 2ftc_H L13MT, MRP-L13, 39S rib 100.0 1.7E-38 5.8E-43 243.0 8.1 92 2-93 53-147 (148)
5 2zjr_G 50S ribosomal protein L 100.0 7.3E-38 2.5E-42 244.8 7.0 91 2-92 76-169 (174)
6 4b6a_O 60S ribosomal protein L 100.0 3.3E-38 1.1E-42 251.1 1.6 103 3-108 30-136 (199)
7 1j3a_A 50S ribosomal protein L 100.0 1.4E-37 4.7E-42 236.3 2.8 101 2-108 24-129 (142)
8 3bbo_L Ribosomal protein L13; 100.0 1E-36 3.5E-41 248.7 5.5 96 2-97 149-247 (250)
9 4a17_I RPL13A, 60S ribosomal p 100.0 2.3E-34 7.9E-39 228.8 1.3 104 2-108 28-135 (198)
10 3jyw_M 60S ribosomal protein L 100.0 5.3E-34 1.8E-38 223.6 1.3 105 2-111 23-133 (178)
11 1vq8_J 50S ribosomal protein L 100.0 9.5E-34 3.3E-38 216.0 2.1 96 2-109 32-131 (145)
12 2zkr_j 60S ribosomal protein L 100.0 4.3E-33 1.5E-37 222.2 3.7 95 3-108 30-136 (203)
13 3iz5_K 60S ribosomal protein L 100.0 1.1E-32 3.9E-37 220.2 1.6 102 2-108 34-141 (206)
No 1
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=1e-39 Score=247.79 Aligned_cols=90 Identities=21% Similarity=0.362 Sum_probs=87.6
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
-||+|||||||+|+|||+ ++.||+|||||||+++++++++++++|++||++||+||||||++|+.+|+||+||+|++
T Consensus 48 ~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGglk~~~~~~~~~r~P~~ii~~aVrGMLPk~~lgr~~l~rLkVy~G~~ 127 (140)
T 3v2d_N 48 MGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPD 127 (140)
T ss_dssp CCCEEEEECGGGCBCCTTHHHHCEEEEECSSTTCEEEEEHHHHHHHCTHHHHHHHHHHTSCSSHHHHHHHHTEEECSSSC
T ss_pred CCCEEEEEeCcceEccCchhhheeeEEecccCCcceeccHHHhhhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCC
Confidence 489999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceec
Q 032581 79 HPFGDRPLEPYVM 91 (137)
Q Consensus 79 Hph~aQkp~~l~~ 91 (137)
|||++|+|++|++
T Consensus 128 hph~aq~p~~~~~ 140 (140)
T 3v2d_N 128 HPHQAQRPEKLEV 140 (140)
T ss_dssp CSCGGGCCEEECC
T ss_pred CCcccCCCeecCC
Confidence 9999999998864
No 2
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=2.4e-39 Score=246.31 Aligned_cols=90 Identities=23% Similarity=0.356 Sum_probs=87.6
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
-||+|||||||+|+|||+ ++.||+|||||||+++++++++++++|++||++||+||||||++|+.+|+||+||+|++
T Consensus 50 ~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~ 129 (142)
T 3r8s_J 50 TGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNE 129 (142)
T ss_dssp CCCEEEEECGGGCBCCTTHHHHCBCCEECSSTTCEECCBHHHHHHHCSHHHHHHHHHHHSCSSHHHHHHHTTEEECSSSC
T ss_pred CCCEEEEEeCcccCccCchhhceEEEEecCcCCCccccCHHHHHhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCC
Confidence 489999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceec
Q 032581 79 HPFGDRPLEPYVM 91 (137)
Q Consensus 79 Hph~aQkp~~l~~ 91 (137)
|||++|+|++|++
T Consensus 130 hph~aq~p~~l~~ 142 (142)
T 3r8s_J 130 HNHAAQQPQVLDI 142 (142)
T ss_dssp CSCGGGCCEECCC
T ss_pred CCcccCCCeecCC
Confidence 9999999998864
No 3
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=7.5e-39 Score=248.21 Aligned_cols=90 Identities=21% Similarity=0.362 Sum_probs=86.4
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
.||+|||||||+|+|||+ ++.||+|||||||+++++++++++++|++||++||+||||||++|+.+|+||+||+|++
T Consensus 71 ~GD~VVVINaekI~iTG~K~~~K~yy~htgypGglk~~t~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVY~G~~ 150 (163)
T 3f1f_N 71 MGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPD 150 (163)
T ss_dssp CCCBCEECCGGGCBCSTTHHHHCEECCBCSSTTCBCCEEHHHHHHSSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSC
T ss_pred CCCEEEEEeCcccccCCchhhheeeEEecCcCCcceeeehHHhhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCC
Confidence 489999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceec
Q 032581 79 HPFGDRPLEPYVM 91 (137)
Q Consensus 79 Hph~aQkp~~l~~ 91 (137)
|||++|+|++|++
T Consensus 151 hPh~aQ~P~~l~~ 163 (163)
T 3f1f_N 151 HPHQAQRPEKLEV 163 (163)
T ss_dssp CCCCSCCCBCC--
T ss_pred CCcccCCCeecCC
Confidence 9999999998864
No 4
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.7e-38 Score=242.97 Aligned_cols=92 Identities=23% Similarity=0.250 Sum_probs=89.0
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
-||||||||||+|+|||+ ++.||+|||||||+++++++++++++|++||++||+||||||++|+.+|+||+||+|++
T Consensus 53 ~Gd~VVViNaeki~~tG~k~~~K~yy~htg~pGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~ 132 (148)
T 2ftc_H 53 CGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEY 132 (148)
T ss_pred CCCEEEEEeceeeEeccchHhhheeeeeeCCcCCceeccHHHHhhcCHHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCC
Confidence 489999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceecCC
Q 032581 79 HPFGDRPLEPYVMPP 93 (137)
Q Consensus 79 Hph~aQkp~~l~~~p 93 (137)
|||++|+|++++++.
T Consensus 133 hP~~aq~p~~~~i~~ 147 (148)
T 2ftc_H 133 IPEDILKNLVEELPQ 147 (148)
T ss_pred CChHHhCCeeeccCC
Confidence 999999999988753
No 5
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=7.3e-38 Score=244.79 Aligned_cols=91 Identities=21% Similarity=0.373 Sum_probs=88.4
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
-||||||||||+|+|||+ ++.||+|||||||+++++++++++++|++||++||+||||||++|+.+|+||+||+|++
T Consensus 76 ~GD~VVVINAeki~lTG~K~~~K~yy~htgypGGlk~~~~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVy~G~~ 155 (174)
T 2zjr_G 76 QGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGET 155 (174)
T ss_dssp CCCEEEEECCTTCBCSSCSSSSCEEEECCSSCSSCCEEEESTTTTSCHHHHHHHHHGGGSCCSHHHHHHHTTCEECSCST
T ss_pred CCCEEEEEeCeeeEeccchhhceEEEEecCcCCCcccccHHHHhhcChHHHHHHHHHhcCCCChhHHHHHhCeEEECCCC
Confidence 489999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceecC
Q 032581 79 HPFGDRPLEPYVMP 92 (137)
Q Consensus 79 Hph~aQkp~~l~~~ 92 (137)
|||++|+|+++++.
T Consensus 156 hph~aqkp~~l~~~ 169 (174)
T 2zjr_G 156 HPHSAQKPQVLKTQ 169 (174)
T ss_dssp GGGGSCCSCCCCCC
T ss_pred CChhccCCeEEecc
Confidence 99999999998863
No 6
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=3.3e-38 Score=251.12 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=99.4
Q ss_pred CcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCC-CChhHHHHhccceeeCCCC
Q 032581 3 SIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 3 ~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLP-Kn~lGr~~lkrLkVy~G~~ 78 (137)
||+|||||||+|+|||+ ++.||+|||||||++..+++++++++|++||++||+|||| ||++|+.+|+||+||+|++
T Consensus 30 Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~il~~aVrGMLP~K~~lGr~~l~rLkVy~G~~ 109 (199)
T 4b6a_O 30 GQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIP 109 (199)
T ss_dssp TCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSCCCCCSHHHHHHHHHHTTSCTTSHHHHHHHHTEEECSSCC
T ss_pred CCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHHHhhcCcHHHHHHHHhccCCCCChhhhHHHhccEEeCCCC
Confidence 89999999999999999 8999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCccceecCCccccccccccchhHH
Q 032581 79 HPFGDRPLEPYVMPPRRVRELRPRVRRAMI 108 (137)
Q Consensus 79 Hph~aQkp~~l~~~p~~~r~~~~~~~r~~~ 108 (137)
|||++|+++++ |++++.++++|+|.||
T Consensus 110 hph~aqk~~vv---p~Al~~~~lkp~~Ky~ 136 (199)
T 4b6a_O 110 PPYDKKKRVVV---PQALRVLRLKPGRKYT 136 (199)
T ss_dssp SGGGGSCCBBC---GGGBHHHHSCTTCCEE
T ss_pred CCcccCCCEec---chHHHhhccCCCCCeE
Confidence 99999999875 8999999999999664
No 7
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=1.4e-37 Score=236.33 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=80.4
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccc-cChhHHhhcChhHHHHHHHHccCC-CChhHHHHhccceeeCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKE-RTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPG 76 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~-~t~~~~~~r~P~~Il~rAVrGMLP-Kn~lGr~~lkrLkVy~G 76 (137)
-||||||||||+|+|||+ ++.||+|||||||++. ++ +++++++|++||++||+|||| ||++|+.+|+||+||+|
T Consensus 24 ~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~~r~P~~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G 102 (142)
T 1j3a_A 24 EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVG 102 (142)
T ss_dssp TTCCEEEECGGGCEEESCHHHHHHHHHHHC--------------CCCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSS
T ss_pred cCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCcc-CcccccCHHHHHHHHHHhhccCCCHHHHHHHhCcEEeCC
Confidence 389999999999999999 8899999999999776 77 999999999999999999999 99999999999999999
Q ss_pred CCCCCCCCCccceecCCccccccccccchhHH
Q 032581 77 SEHPFGDRPLEPYVMPPRRVRELRPRVRRAMI 108 (137)
Q Consensus 77 ~~Hph~aQkp~~l~~~p~~~r~~~~~~~r~~~ 108 (137)
++|||++|+|++++ .++. .++. +|.+|
T Consensus 103 ~~hp~~aqkp~~~~---~a~~-~~~~-~~k~~ 129 (142)
T 1j3a_A 103 IPKEFQDKQLETIV---EAHV-SRLS-RPKYV 129 (142)
T ss_dssp CCGGGTTSCCBCCG---GGBG-GGSS-SCCEE
T ss_pred CCCCccccCcEecc---HHHh-hccC-CCCeE
Confidence 99999999999874 4554 4553 66655
No 8
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1e-36 Score=248.68 Aligned_cols=96 Identities=23% Similarity=0.344 Sum_probs=83.7
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCCCChhHHHHhccceeeCCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSE 78 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPKn~lGr~~lkrLkVy~G~~ 78 (137)
-||||||||||+|+|||+ ++.|++|||||||+++++++++++++|++||++||+||||||++|+.+|+||+||+|++
T Consensus 149 ~GD~VVVINAeKI~lTG~K~~~K~Y~rHsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPkn~lGr~~lkrLkVY~G~~ 228 (250)
T 3bbo_L 149 MGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAE 228 (250)
T ss_dssp CSCCCEESCCSSCCCCSGGGGTCCCBCCCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCSSSSHHHHHTTCCCCSSSC
T ss_pred CCCEEEEEecceEEecCChhhceEEEEecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCC
Confidence 489999999999999999 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceecCCcccc
Q 032581 79 HPFGDRPLEPYVMPPRRVR 97 (137)
Q Consensus 79 Hph~aQkp~~l~~~p~~~r 97 (137)
|||++|+|+++++....++
T Consensus 229 HPh~aQkp~~l~ia~k~v~ 247 (250)
T 3bbo_L 229 HPHQAQQPIDLPLRDKRIR 247 (250)
T ss_dssp CSCTTSCC-----------
T ss_pred CCHHHcCCeeechhhheee
Confidence 9999999999876554443
No 9
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=99.98 E-value=2.3e-34 Score=228.83 Aligned_cols=104 Identities=18% Similarity=0.148 Sum_probs=97.8
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCC-CChhHHHHhccceeeCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGS 77 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLP-Kn~lGr~~lkrLkVy~G~ 77 (137)
-||||||||||+|+|||+ ++.||+|+.++++....+++++++++|++||++||+|||| ||++|+.+|+||+||+|+
T Consensus 28 ~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~~~r~P~rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~ 107 (198)
T 4a17_I 28 SGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGI 107 (198)
T ss_dssp TTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHHCEECSSC
T ss_pred CCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccccccCHHHHHHHHHhccCCCCChhHHHHHhCcEEecCC
Confidence 489999999999999999 7899999989998887788999999999999999999999 599999999999999999
Q ss_pred CCCCCCCCccceecCCccccccccccchhHH
Q 032581 78 EHPFGDRPLEPYVMPPRRVRELRPRVRRAMI 108 (137)
Q Consensus 78 ~Hph~aQkp~~l~~~p~~~r~~~~~~~r~~~ 108 (137)
||||++|+++++ |++++..|++|+|.||
T Consensus 108 ~hph~aqk~~vv---p~al~v~rl~~~rk~~ 135 (198)
T 4a17_I 108 PTPYDRVKKQVV---VDALKVQRLRNSRPVC 135 (198)
T ss_dssp CGGGTTSCCBCC---GGGBHHHHSCTTSCEE
T ss_pred CCChhhcccccc---chHhhhhhcCCCCCeE
Confidence 999999998875 8999999999999876
No 10
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.97 E-value=5.3e-34 Score=223.57 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=93.4
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccc--cChhHHhhcChhHHHHHHHHccCC-CChhHHHHhccceeeC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKE--RTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFP 75 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~--~t~~~~~~r~P~~Il~rAVrGMLP-Kn~lGr~~lkrLkVy~ 75 (137)
-||||||||||+|+|||+ ++.||+| |++.... .+.+++++++|++||++||+|||| ||++|+.+|+||+||+
T Consensus 23 ~GD~VVVINaeki~iTG~K~~~K~yy~h--~l~~~~~~~~~~~~~~~r~P~~Il~~AVrGMLP~K~~lGr~~l~rLkVy~ 100 (178)
T 3jyw_M 23 NGQKIVVVRAEELNISGEFFRNKLKYHD--FLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFE 100 (178)
T ss_dssp TTCCCCEECSTTSCCCCCSSHHHHSCSS--SSSSTTSCCCSSSCCCCSSTTTHHHHHTTSSSCSSSHHHHHHHHHCCEES
T ss_pred CCCEEEEEeCeeeEEcCchHhhEhheec--cCcccccCCccccccccCCHHHHHHHHHHHHhhcccHhHHHHHhCCeeeC
Confidence 489999999999999999 7899998 5544332 346899999999999999999999 6999999999999999
Q ss_pred CCCCCCCCCCccceecCCccccccccccchhHHHhh
Q 032581 76 GSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQ 111 (137)
Q Consensus 76 G~~Hph~aQkp~~l~~~p~~~r~~~~~~~r~~~~~~ 111 (137)
|++|||++|+++++ |++++.+|++|+|.||.-.
T Consensus 101 G~~hp~~aqk~~vv---p~Alrv~RLkp~rKy~tLG 133 (178)
T 3jyw_M 101 GIPPPYDKKKRVVV---PQALRVLRLKPGRKYTTLG 133 (178)
T ss_dssp SCCCCSCCSCSSSC---CSSCCCCCSSSCSCCCCHH
T ss_pred CCCCchhhcccccC---chHhhhhccCCCCceEEcc
Confidence 99999999999876 8999999999999887544
No 11
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=99.97 E-value=9.5e-34 Score=216.02 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=85.4
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCcccccChhHHhhcChhHHHHHHHHccCC-CChhHHHHhccceeeCCC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGS 77 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~t~~~~~~r~P~~Il~rAVrGMLP-Kn~lGr~~lkrLkVy~G~ 77 (137)
-||||||||||+|+|||+ ++.||+||||||| +++++++++|++||++||+|||| ||++|+.+|+||+||+|+
T Consensus 32 ~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~~~~~~~r~P~~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~ 107 (145)
T 1vq8_J 32 DGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGN 107 (145)
T ss_dssp TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----SSCCCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSC
T ss_pred cCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----CHHHHhhcChHHHHHHHHHhhcCCCCHHHHHHHhCeEEECCC
Confidence 389999999999999999 8999999999998 78999999999999999999999 999999999999999999
Q ss_pred CCCCCCCCccceecCCccccccccccchhHHH
Q 032581 78 EHPFGDRPLEPYVMPPRRVRELRPRVRRAMIR 109 (137)
Q Consensus 78 ~Hph~aQkp~~l~~~p~~~r~~~~~~~r~~~~ 109 (137)
||| |+|+++ |.+.. .++. +|.+|.
T Consensus 108 ~~p---~k~~vv---~~a~~-~~l~-~~k~~~ 131 (145)
T 1vq8_J 108 PYD---EDGEVL---DGTSL-DRLS-NIKFVT 131 (145)
T ss_dssp CSS---SCCBCC---TTCBC-CTTS-CCSEEE
T ss_pred CCC---CCceee---ehhhh-hccC-CCCeEE
Confidence 999 788776 44544 4554 666653
No 12
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.97 E-value=4.3e-33 Score=222.23 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=89.3
Q ss_pred CcEEEEEeccceEeecC---CceeE-Eec-------CccCcccccChhHHhhcChhHHHHHHHHccCCC-ChhHHHHhcc
Q 032581 3 SIYVVFFILRNLFILSL---NDEMS-VSY-------RYIGHLKERTLKEQMERDPTEAIRKAVLRMLPR-NKLRDDRDRK 70 (137)
Q Consensus 3 ~~~VVVVNaekI~isG~---~k~Y~-~hs-------gypGGlk~~t~~~~~~r~P~~Il~rAVrGMLPK-n~lGr~~lkr 70 (137)
|+||||||||+|+|||+ ++.|| +|+ +|||| +++++|++||++||+||||+ |++|+.+|+|
T Consensus 30 G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G~--------~~~r~P~~I~~~AVrGMLPkk~~lGr~~l~r 101 (203)
T 2zkr_j 30 GRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGP--------YDFRAPSRIFWRTVRGMLPHKTKRGQAALDR 101 (203)
T ss_dssp TCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCC--------CCCCSHHHHHHHHHHHHSCTTSHHHHHHHHT
T ss_pred CCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCCCc--------cccCChHHHHHHHHHhhCCCCChhHHHHHhC
Confidence 79999999999999999 78999 998 78887 57899999999999999998 8999999999
Q ss_pred ceeeCCCCCCCCCCCccceecCCccccccccccchhHH
Q 032581 71 LRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMI 108 (137)
Q Consensus 71 LkVy~G~~Hph~aQkp~~l~~~p~~~r~~~~~~~r~~~ 108 (137)
|+||+|+||||++|+|+++ |++++.++++++|.||
T Consensus 102 LkVy~G~~hp~~aqkp~vv---p~a~~v~~~~~~~ky~ 136 (203)
T 2zkr_j 102 LKVFDGIPPPYDKKKRMVV---PAALKVVRLKPTRKFA 136 (203)
T ss_dssp EEECSCSSCSSSSCCBCCG---GGBCCSSSSSCCSCEE
T ss_pred cEEeCCCCCchhhcCCccc---chhhhhhhcCCCCceE
Confidence 9999999999999999886 7999999999999887
No 13
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=99.97 E-value=1.1e-32 Score=220.20 Aligned_cols=102 Identities=12% Similarity=0.171 Sum_probs=90.7
Q ss_pred CCcEEEEEeccceEeecC---CceeEEecCccCccccc--ChhHHhhcChhHHHHHHHHccCCC-ChhHHHHhccceeeC
Q 032581 2 ISIYVVFFILRNLFILSL---NDEMSVSYRYIGHLKER--TLKEQMERDPTEAIRKAVLRMLPR-NKLRDDRDRKLRIFP 75 (137)
Q Consensus 2 ~~~~VVVVNaekI~isG~---~k~Y~~hsgypGGlk~~--t~~~~~~r~P~~Il~rAVrGMLPK-n~lGr~~lkrLkVy~ 75 (137)
-||+|||||||+|+|||+ ++.||+| |++....+ +++++++++|++||++||+||||+ |++|+.+|+||+||+
T Consensus 34 ~Gd~VVVINAekI~iTG~K~~~K~yy~~--~l~~~~~~np~~~~~~~r~P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~ 111 (206)
T 3iz5_K 34 NGQRVVVVRCEEICMSGGLVRQKMKYLR--FLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYE 111 (206)
T ss_dssp TTCCEEEECGGGCEEESCHHHHHHHHHH--HHHHTTCSCSSSCSCCCCSHHHHHHHHHHHHSCTTSHHHHHHHTTEEEES
T ss_pred CCCEEEEEcCcccCcCCchHhhhhheee--ecceeecCCCcccchhhcCHHHHHHHHHhccCCCCChhHHHHHhCCEEeC
Confidence 489999999999999999 7888887 55543332 358999999999999999999996 999999999999999
Q ss_pred CCCCCCCCCCccceecCCccccccccccchhHH
Q 032581 76 GSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMI 108 (137)
Q Consensus 76 G~~Hph~aQkp~~l~~~p~~~r~~~~~~~r~~~ 108 (137)
|+||||++|+.+++ |++++..++.|+|.||
T Consensus 112 G~~hp~~aqk~~vv---P~al~v~~l~p~rk~~ 141 (206)
T 3iz5_K 112 GVPPPYDRTKRMVI---PDALKVLRLQPGHRYC 141 (206)
T ss_dssp SCCTTCCSCCBCCT---TTBCBTTBCSSSSCEE
T ss_pred CCCCChhhcccccC---chHHhhhhcCCCCCeE
Confidence 99999999998764 8999999999999876
Done!