RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032581
(137 letters)
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial;
mitochondrial ribosome, large ribosomal subunit,
ribosomal R ribosome; 12.10A {Bos taurus}
Length = 148
Score = 75.3 bits (186), Expect = 2e-18
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
Y G ++ T + RDP ++ A+ MLP+N R +L +FP P
Sbjct: 83 YPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIP 134
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N
2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N
2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Length = 140
Score = 72.5 bits (179), Expect = 2e-17
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
Y G LK+ L++ + P + AV MLP+ L ++L+++ G +HP
Sbjct: 78 YPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHP 129
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H
1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J
2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Length = 142
Score = 71.4 bits (176), Expect = 4e-17
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
+IG +K+ T +E + R P I AV MLP+ L RKL+++ G+EH
Sbjct: 80 HIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHN 131
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H*
1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G*
3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Length = 174
Score = 71.1 bits (175), Expect = 1e-16
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
Y G LK T +E + + P I AV MLP+ + +L+++ G HP
Sbjct: 106 YQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHP 157
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A
{Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Length = 163
Score = 70.3 bits (173), Expect = 2e-16
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
Y G LK+ L++ + P + AV MLP+ L ++L+++ G +HP
Sbjct: 101 YPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHP 152
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 250
Score = 69.8 bits (171), Expect = 1e-15
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 80
G LKE T + +R P I AV MLP+ +L L+++ G+EHP
Sbjct: 179 RPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHP 230
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly,
ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Length = 142
Score = 51.5 bits (124), Expect = 2e-09
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 27 YRYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDRP 85
+ L + E +R+ + MLP + R+L+++ G F D+
Sbjct: 52 RTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDK- 110
Query: 86 LEPYVMPP-RRVRELRPR 102
+ + R RP+
Sbjct: 111 -QLETIVEAHVSRLSRPK 127
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M
1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I*
1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K*
1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Length = 145
Score = 43.8 bits (104), Expect = 1e-06
Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 29 YIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDRPLE 87
IG+ + P ++ + MLP + + + +R++ G+ + L+
Sbjct: 62 DIGNDNGYFY----PKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLD 117
Query: 88 PY---VMPPRR 95
+ +
Sbjct: 118 GTSLDRLSNIK 128
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 44.6 bits (105), Expect = 2e-06
Identities = 12/110 (10%), Positives = 39/110 (35%), Gaps = 3/110 (2%)
Query: 27 YRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRD-RKLRIFPGSEHPFGDRP 85
+ + + R P + + + + M+P R + +L+ + G P+
Sbjct: 62 FLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTK 121
Query: 86 LE--PYVMPPRRVRELRPRVRRAMIREQKKAEMQQSNKDMRKNRKKEVEA 133
P + R++ + ++ + +++ + RK++ +
Sbjct: 122 RMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRELEEKRKEKAKV 171
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 43.2 bits (102), Expect = 3e-06
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 27 YRYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDRP 85
+ +T R P+ KA+ M+ + +L++F G P+ +
Sbjct: 51 FLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKK- 109
Query: 86 LEPYVMP-PRRVRELRPR 102
+ V+P RV L+P
Sbjct: 110 -KRVVVPQALRVLRLKPG 126
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 43.0 bits (101), Expect = 5e-06
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 21/132 (15%)
Query: 27 YRYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDRP 85
+ Q R P+ +AV MLP + +L+IF G P+
Sbjct: 56 FLNKWMNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVK 115
Query: 86 LE--PYVMPPRRVRELRPRVR------------RAMI------REQKKAEMQQSNKDMRK 125
+ + +R+R RP + + +I R +
Sbjct: 116 KQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRARAKTYHDKKVKQAD 175
Query: 126 NRKKEVEAEVTA 137
RKKE+ A
Sbjct: 176 ARKKELAAPALK 187
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 42.6 bits (100), Expect = 7e-06
Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 18/129 (13%)
Query: 27 YRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRD-RKLRIFPGSEHPFG--D 83
+ +T R P+ KA+ M+ R +L++F G P+
Sbjct: 57 FLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKK 116
Query: 84 RPLEPYVMPPRRVRELRPRVR---------------RAMIREQKKAEMQQSNKDMRKNRK 128
R + P + R++ R A + ++K + R K
Sbjct: 117 RVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTK 176
Query: 129 KEVEAEVTA 137
K A TA
Sbjct: 177 KVASANATA 185
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 36.5 bits (84), Expect = 0.001
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Query: 20 NDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSE 78
N +++ + R P+ + V MLP + K +L++F G
Sbjct: 50 NKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP 109
Query: 79 HPFGDRPLEPYVMPPRRVRELRPR 102
P+ + + VR R
Sbjct: 110 PPYDKKKRMVVPAALKVVRLKPTR 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.075
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 21/106 (19%)
Query: 27 YRYIG-HLKERTLKEQMERDPTEAIRKAVL--RMLPRNKLRDDRDRKLRIFPGSEHP-FG 82
Y +IG HLK E ER R L R L K+R D GS
Sbjct: 474 YSHIGHHLKN---IEHPERM--TLFRMVFLDFRFL-EQKIR--HDSTAWNASGSILNTLQ 525
Query: 83 D-RPLEPYV-----MPPRRVRELR---PRVRRAMIREQKKAEMQQS 119
+ +PY+ R V + P++ +I + ++ +
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 31.4 bits (70), Expect = 0.084
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 23/131 (17%)
Query: 22 EMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLR------MLPRNKLRDDRDRKLRIF- 74
E Y+ I + E + + + + K++L ++ +D LR+F
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII---MSKDAVSGTLRLFW 69
Query: 75 ----PGSE--HPFGDRPLEP---YVMPPRRVRELRPRVRRAMIREQKKAEMQQSNKDMRK 125
E F + L ++M P + + +P + M EQ+ + N+ K
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAK 128
Query: 126 ---NRKKEVEA 133
+R +
Sbjct: 129 YNVSRLQPYLK 139
Score = 26.4 bits (57), Expect = 4.6
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 14/85 (16%)
Query: 5 YVVFFILRNLFILSLNDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLR 64
V ++ L SL ++ LK ++E + A+ ++++
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY--ALHRSIV--------- 450
Query: 65 DDRDRKLRIFPGSEHPFGDRPLEPY 89
D + F + L+ Y
Sbjct: 451 -DHYNIPKTFDSDD--LIPPYLDQY 472
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 28.3 bits (64), Expect = 0.82
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 93 PRRVRELRPRVRR 105
RRV +R R+
Sbjct: 113 VRRVEHMRGRITE 125
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 28.0 bits (63), Expect = 0.93
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 93 PRRVRELRPRVRR 105
RR LRPR R
Sbjct: 124 ARRAESLRPRARE 136
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 28.0 bits (63), Expect = 1.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 93 PRRVRELRPRVRR 105
RRV E++P+V
Sbjct: 118 ARRVLEMQPKVEE 130
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 28.0 bits (63), Expect = 1.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 93 PRRVRELRPRVRR 105
RRV LRPRV+
Sbjct: 133 MRRVELLRPRVQE 145
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 28.0 bits (63), Expect = 1.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 93 PRRVRELRPRVRR 105
RRV +RPRV +
Sbjct: 111 VRRVEAMRPRVEQ 123
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 28.0 bits (63), Expect = 1.1
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 93 PRRVRELRPRVRR 105
RR+ EL PR+
Sbjct: 108 VRRMNELEPRITE 120
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 28.0 bits (63), Expect = 1.1
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 93 PRRVRELRPRVRR 105
RRV +RP V
Sbjct: 108 ARRVDAMRPAVEA 120
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 27.9 bits (63), Expect = 1.1
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 93 PRRVRELRPRVRR 105
RR+ LRPR+
Sbjct: 100 ARRMERLRPRIEE 112
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 28.0 bits (63), Expect = 1.1
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 93 PRRVRELRPRVRR 105
R V +R R R
Sbjct: 114 ARGVERVRERSRG 126
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 28.0 bits (63), Expect = 1.1
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 93 PRRVRELRPRVRR 105
P V+ L+P ++R
Sbjct: 108 PEAVKNLQPYIQR 120
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 28.0 bits (63), Expect = 1.1
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 93 PRRVRELRPRVRR 105
+ LRPR +
Sbjct: 117 VGATKRLRPRAQE 129
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 28.0 bits (63), Expect = 1.2
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 93 PRRVRELRPRVRR 105
R V L P+V+
Sbjct: 107 SRFVVALEPKVQA 119
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 28.0 bits (63), Expect = 1.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 93 PRRVRELRPRVRR 105
RR++ LRP ++R
Sbjct: 108 VRRMQALRPNIQR 120
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 1.2
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 93 PRRVRELRPRVRRAMIREQKKAEMQQSNKDMRKNRKKEVE 132
P +R+ R +R + ++ A + ++ R+ KK++E
Sbjct: 84 PESIRKWREE-QRKRL-QELDAASKVMEQEWREKAKKDLE 121
Score = 26.7 bits (58), Expect = 2.6
Identities = 11/92 (11%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 40 EQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVREL 99
+++ ++P E+IRK R + D + + + + ++ E
Sbjct: 78 DRLTQEP-ESIRKWREEQRKRLQELDAASKVME--------------QEWREKAKKDLEE 122
Query: 100 RPRVRRAMIREQKKAEMQQSNKDMRKNRKKEV 131
+ + + E+ K + ++K + ++
Sbjct: 123 WNQRQSEQV-EKNKINNRIADKAFYQQPDADI 153
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 27.6 bits (62), Expect = 1.2
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 93 PRRVRELRPRVRR 105
RR+R + P ++
Sbjct: 118 VRRIRRMEPAIQS 130
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 27.6 bits (62), Expect = 1.3
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 93 PRRVRELRPRVRR 105
RRVR +RP V+
Sbjct: 120 VRRVRAMRPAVQA 132
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 27.6 bits (62), Expect = 1.3
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 93 PRRVRELRPRVRR 105
+R+ LRPR++
Sbjct: 116 VKRLAALRPRIQD 128
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 27.6 bits (62), Expect = 1.3
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 93 PRRVRELRPRVRR 105
P ++ LR
Sbjct: 120 PATMKRLRDGFAA 132
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 27.6 bits (62), Expect = 1.4
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 93 PRRVRELRPRVRR 105
+R+ +RPR++
Sbjct: 115 VKRMNAIRPRLQS 127
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 27.6 bits (62), Expect = 1.4
Identities = 2/13 (15%), Positives = 8/13 (61%)
Query: 93 PRRVRELRPRVRR 105
R+++ + P + +
Sbjct: 109 LRKMQRMAPYIEQ 121
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 27.6 bits (62), Expect = 1.4
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 93 PRRVRELRPRVRR 105
+R++ +RP V
Sbjct: 116 VKRIKGMRPEVEE 128
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 27.6 bits (62), Expect = 1.5
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 93 PRRVRELRPRVRR 105
PRR+ ++P VR
Sbjct: 121 PRRITAVQPFVRS 133
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 27.6 bits (62), Expect = 1.5
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 93 PRRVRELRPRVRR 105
R + LR ++R
Sbjct: 116 SRAIDLLRAEIQR 128
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 27.6 bits (62), Expect = 1.5
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 93 PRRVRELRPRVRR 105
P V LRPR+
Sbjct: 119 PSIVTGLRPRIAE 131
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 27.2 bits (61), Expect = 1.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 93 PRRVRELRPRVRR 105
PR + +L PR+R
Sbjct: 108 PRTISDLEPRIRD 120
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 27.2 bits (61), Expect = 1.8
Identities = 3/13 (23%), Positives = 4/13 (30%)
Query: 93 PRRVRELRPRVRR 105
P+ V R
Sbjct: 100 PKLVDGWVRTTRE 112
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 27.3 bits (61), Expect = 1.9
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 93 PRRVRELRPRVRR 105
+R+L ++R
Sbjct: 123 LAEIRKLEDQIRT 135
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 27.3 bits (61), Expect = 1.9
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 93 PRRVRELRPRVRR 105
PR ++ L P +
Sbjct: 118 PRVIKRLEPEITA 130
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 27.2 bits (61), Expect = 1.9
Identities = 2/13 (15%), Positives = 5/13 (38%)
Query: 93 PRRVRELRPRVRR 105
P ++R+
Sbjct: 105 PEATDLFTEQLRQ 117
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 27.3 bits (61), Expect = 1.9
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 93 PRRVRELRPRVRR 105
V +L R++
Sbjct: 122 MPVVDKLENRIQE 134
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 27.2 bits (61), Expect = 2.0
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 93 PRRVRELRPRVRR 105
PR+V + P VR+
Sbjct: 117 PRQVETVEPTVRK 129
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 27.2 bits (61), Expect = 2.1
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 93 PRRVRELRPRVRR 105
P +R L P +
Sbjct: 100 PSALRRLEPVIAG 112
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 27.1 bits (61), Expect = 2.1
Identities = 1/13 (7%), Positives = 6/13 (46%)
Query: 93 PRRVRELRPRVRR 105
P ++ + + +
Sbjct: 68 PSKINDYKDFIEE 80
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 26.9 bits (60), Expect = 2.2
Identities = 3/13 (23%), Positives = 8/13 (61%)
Query: 93 PRRVRELRPRVRR 105
++R++ +VR
Sbjct: 122 LAKIRKVEDKVRE 134
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 26.9 bits (60), Expect = 2.2
Identities = 2/13 (15%), Positives = 6/13 (46%)
Query: 93 PRRVRELRPRVRR 105
+ L P +++
Sbjct: 134 GDALDHLSPLIKQ 146
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 26.8 bits (60), Expect = 2.7
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 93 PRRVRELRPRVRR 105
PR +P +
Sbjct: 101 PRTTESYQPYIIE 113
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 26.8 bits (60), Expect = 2.9
Identities = 2/13 (15%), Positives = 6/13 (46%)
Query: 93 PRRVRELRPRVRR 105
+RV++ +
Sbjct: 96 RKRVKDKEASIAA 108
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 26.4 bits (59), Expect = 3.1
Identities = 3/13 (23%), Positives = 8/13 (61%)
Query: 93 PRRVRELRPRVRR 105
P++++ L +R
Sbjct: 89 PQKLQTLETFIRE 101
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 26.2 bits (58), Expect = 4.4
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 93 PRRVRELRPRVRR 105
P+ + L +R+
Sbjct: 145 PKNLARLDGEIRK 157
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 26.1 bits (58), Expect = 4.6
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 93 PRRVRELRPRVRR 105
R+L RVR
Sbjct: 127 RAAARKLAERVRI 139
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 25.8 bits (57), Expect = 5.8
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 4 IYVVFFILRNLFILSLNDEMSVSYRYI--GHLKERTLKEQMERDPTEAIRKAV--LRMLP 59
I+VV F++ NL + D M++ + + E E + +R+ + L+ L
Sbjct: 220 IFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELI 279
Query: 60 RNKLRD 65
+ L++
Sbjct: 280 KTSLKN 285
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1,
glycerophosphoryl diester phosphodiesterase, ST
genomics; HET: MSE CIT GOL; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 272
Score = 25.8 bits (57), Expect = 5.8
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 16/86 (18%)
Query: 28 RYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLE 87
+Y G +K + ++ V+ + + + D R S F R L
Sbjct: 132 QYNGEIKSTVEGDNIDHPNIALFCDLVVAEIKKAHITD------RFTLQS---FDVRAL- 181
Query: 88 PYVMPPRRVRELRPRVRRAMIREQKK 113
+ P ++ + + E K
Sbjct: 182 ------EYMHSQYPDIKLSYLVETKG 201
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 25.8 bits (57), Expect = 6.8
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 93 PRRVRELRPRVRR 105
P+ V + VR
Sbjct: 138 PKVVARIEAAVRD 150
>3crn_A Response regulator receiver domain protein, CHEY-; structural
genomics, signal regulator receiver domain; HET: PHD;
1.58A {Methanospirillum hungatei jf-1}
Length = 132
Score = 25.1 bits (55), Expect = 7.2
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 89 YVMPPRRVRELRPRVRRAMIREQKKAEMQQ 118
Y+M P R+L +++ + ++K+
Sbjct: 101 YIMKPVNPRDLLEKIKEKLDEQEKEGHHHH 130
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 25.4 bits (56), Expect = 7.7
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 93 PRRVRELRPRVRR 105
P +R+L +RR
Sbjct: 123 PASIRKLEENIRR 135
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP;
1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A*
1q9s_A*
Length = 147
Score = 24.8 bits (55), Expect = 8.8
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 38 LKEQMERDPTEAIRKAVLRMLPRNKLRDD 66
L ++ D EA K L + K+++D
Sbjct: 114 LISAIQGDIEEA--KKRLELPEYLKIKED 140
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 24.9 bits (55), Expect = 9.7
Identities = 2/12 (16%), Positives = 4/12 (33%)
Query: 94 RRVRELRPRVRR 105
+ L +R
Sbjct: 104 PKAPGLEQFLRD 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.388
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,127,139
Number of extensions: 124197
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 102
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.7 bits)