RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032581
         (137 letters)



>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
           thermophilus [TaxId: 274]}
          Length = 139

 Score = 56.6 bits (136), Expect = 7e-12
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 27  YRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPF 81
             Y G LK+  L++ +   P   +  AV  MLP+  L     ++L+++ G +HP 
Sbjct: 76  SGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPH 130


>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 142

 Score = 54.6 bits (131), Expect = 5e-11
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 27  YRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPF 81
             Y G LK  T +E + + P   I  AV  MLP+ +       +L+++ G  HP 
Sbjct: 75  TGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPH 129


>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
           [TaxId: 562]}
          Length = 140

 Score = 51.9 bits (124), Expect = 4e-10
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 27  YRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPF 81
             +IG +K+ T +E + R P   I  AV  MLP+  L     RKL+++ G+EH  
Sbjct: 78  TGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNH 132


>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 142

 Score = 42.3 bits (99), Expect = 2e-06
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 6/102 (5%)

Query: 5   YVVFFILRNLFILSLNDEMSVSYR---YIGHLKERTLKEQMERDPTEAIRKAVLRMLP-R 60
            VV        I    + +   Y+    +  L          +   E +R+ +  MLP +
Sbjct: 27  EVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWK 86

Query: 61  NKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPR 102
                   R+L+++ G    F D+  +   +    V  L   
Sbjct: 87  TDRGRKAFRRLKVYVGIPKEFQDK--QLETIVEAHVSRLSRP 126


>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 142

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 5/95 (5%)

Query: 5   YVVFFILRNLFILSLNDEMSVSYRYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLR 64
            V         I    +++   Y     +          + P    ++ +  MLP  K R
Sbjct: 32  TVAVVNAERAVITGREEQIVEKYEKRVDIG-NDNGYFYPKRPDGIFKRTIRGMLPHKKQR 90

Query: 65  DDRD-RKLRIFPGSEHPFGDRPLEPY---VMPPRR 95
                  +R++ G+ +      L+      +   +
Sbjct: 91  GREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIK 125


>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
           C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 654

 Score = 24.5 bits (52), Expect = 6.3
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 57  MLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYV--MPPRRVRELRPRV 103
           +  +  L    +  + I   S+HP   +    +   +    VR    R+
Sbjct: 53  LEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRM 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.388 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 508,358
Number of extensions: 23820
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 26
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.7 bits)