BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032584
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis
thaliana GN=At4g01150 PE=1 SV=1
Length = 164
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 91/123 (73%), Gaps = 10/123 (8%)
Query: 1 MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRS-STPPFSSSIKQVSES--RRFPL 57
+AA++ AV+ PRVP+ +T C A+P LPPRS F+ +K VS + ++ L
Sbjct: 5 VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58
Query: 58 LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV
Sbjct: 59 LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117
Query: 118 PLV 120
PL+
Sbjct: 118 PLL 120
>sp|B4EW02|RNB_PROMH Exoribonuclease 2 OS=Proteus mirabilis (strain HI4320) GN=rnb PE=3
SV=1
Length = 647
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 29 ALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTV-DADELFS 78
A+PC P +S T PF+ V+E RR PL + +E T + D D+ F+
Sbjct: 111 AIPCRPIKSLTHPFADQDWAVAEMRRHPLKGDKHFQAELTDFITDKDDHFA 161
>sp|P11927|KAR1_YEAST Cell division control protein KAR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=KAR1 PE=1 SV=2
Length = 433
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 14 VPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVD- 72
V +T K K SH P + +SS+ SS+ + + PL + + +S+ T T+
Sbjct: 168 VLNTRNPKSKESHIKVKPIINNKSSSQRKSSAALRKQLGKPLPLPYLNSPNSDSTPTLQR 227
Query: 73 ADELFSD--LKEKWDAVENKSTVLLYGGGAIVAVWLSS 108
+E+F+D L++K + +E+K LL+ +V L S
Sbjct: 228 KEEVFTDEVLQKKRELIESKWHRLLFHDKKMVEKKLES 265
>sp|Q74JY4|MURG_LACJO UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=murG PE=3 SV=1
Length = 370
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 42 FSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGG 98
F + KQ SE ++ L++ S++ ++ + + D+ +KWD N TVL++GG
Sbjct: 147 FDDAAKQFSEKKK--LVKTGNPRSQQVLGLNKENI--DIAKKWDLNPNMPTVLIFGG 199
>sp|Q2YDN1|GP161_BOVIN G protein-coupled receptor 161 OS=Bos taurus GN=GPR161 PE=2 SV=1
Length = 528
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 32 CLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKS 91
C P R S+ F ++Q+ E+ + P+L V+A + D + L + A+E ++
Sbjct: 422 CPPKRRSSVTFEDEVEQIKEAAKNPILHVKADVHK-----SLDSYATSLAK---AIEAEA 473
Query: 92 TVLLYGGGAIVAVWLSSTIVGAIN 115
+ L+G A+ V L++ V I
Sbjct: 474 KINLFGEEALPGVLLTARTVPGIG 497
>sp|Q042P9|MURG_LACGA UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Lactobacillus gasseri (strain ATCC 33323
/ DSM 20243) GN=murG PE=3 SV=1
Length = 370
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 42 FSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGG 98
F + KQ SE ++ L++ S++ ++ D + DL +KW N TVL++GG
Sbjct: 147 FDDAAKQFSEKKK--LVKTGNPRSQQVLGLNKDNV--DLAKKWGLNPNMPTVLIFGG 199
>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic
OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
Length = 174
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 81 KEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLV 120
+E W+ V++K + +VA+W S+ ++ AI+ +PLV
Sbjct: 91 QEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLV 130
>sp|P79102|CP3AS_BOVIN Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1
Length = 507
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 33 LPPRSSTPPFSSSIKQVSESR-------RFPLLQVRASSSEETSTVDADELFSDLKEKWD 85
L P+S+ F+ S+K++ ESR R LLQ+ +S+ + +D + SD++
Sbjct: 240 LFPKSTVDFFTKSVKKIKESRLTDKQMNRVDLLQLMI-NSQNSKEIDNHKALSDIE---- 294
Query: 86 AVENKSTVLLYGGGAIVAVWLSSTI 110
+ +ST+ ++GG + LS I
Sbjct: 295 -LVAQSTIFIFGGYETTSSTLSFII 318
>sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2
Length = 2048
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 36 RSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDA 73
+S+TPPF++ Q + R+FP+ Q S+ E++ST A
Sbjct: 1757 QSTTPPFTTVDSQ-KDCRKFPVPQKDGSALEDSSTSGA 1793
>sp|P0CJ84|HTPG_BACFR Chaperone protein htpG OS=Bacteroides fragilis (strain YCH46)
GN=htpG PE=3 SV=1
Length = 681
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 37 SSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLY 96
++ P + ++ V++ R + E+ TV+ DEL +DL +KWD ++ + +
Sbjct: 584 AAIAPIQTELEDVTKRRDALKKKQEGKKDEDIPTVEKDEL-NDLDKKWDELKQQKDSIFA 642
Query: 97 G 97
G
Sbjct: 643 G 643
>sp|Q03696|NGCA_CHICK Neuronal-glial cell adhesion molecule OS=Gallus gallus PE=1 SV=2
Length = 1266
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 11 TPRVPST--TTVKVKSSHCFALPCLPPRSSTPP----FSSSIKQVSESRRFPLLQ 59
TP+ P T V+V+ LPC PP S+ PP +S I +++ R + Q
Sbjct: 131 TPQWPKEKVTPVEVEEGDPVVLPCDPPESAVPPKIYWLNSDIVHIAQDERVSMGQ 185
>sp|Q8A9B8|HTPG_BACTN Chaperone protein HtpG OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=htpG
PE=3 SV=1
Length = 681
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 41 PFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYG 97
P + + VS+ R + E+ T + DEL ++L +KWD ++NK + G
Sbjct: 588 PIQTEMNSVSKRRNELKDSQKDKKEEDIPTAEKDEL-NELDKKWDELKNKKEGIFAG 643
>sp|Q9RNV1|FTSK_SPOUR DNA translocase FtsK OS=Sporosarcina ureae GN=ftsK PE=3 SV=1
Length = 780
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 22 VKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLK 81
V +S A+ P +S P SS ++ ++ + ++Q + S ++E ST+D + +D
Sbjct: 239 VDTSEMEAVQENPEPASEPIISSFTAKIEQATQPEIVQEKQSKAQEDSTLDPKDPVTDYP 298
Query: 82 EKWDAVENKSTVL 94
EN+S VL
Sbjct: 299 VMGGEQENESYVL 311
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,497,903
Number of Sequences: 539616
Number of extensions: 1507166
Number of successful extensions: 6136
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6119
Number of HSP's gapped (non-prelim): 36
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)