BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032585
MCSLQSQHFLNSPLLIFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLPNATRRKKDSLW
RGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREVILGSYEPQLN
LLSKKKLRWFYYCDGGM

High Scoring Gene Products

Symbol, full name Information P value
AT1G12244 protein from Arabidopsis thaliana 9.0e-22

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032585
        (137 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1009023117 - symbol:AT1G12244 species:3702 "Ar...   254  9.0e-22   1


>TAIR|locus:1009023117 [details] [associations]
            symbol:AT1G12244 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006139 "nucleobase-containing
            compound metabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM] [GO:0016788 "hydrolase
            activity, acting on ester bonds" evidence=IEA] InterPro:IPR005227
            InterPro:IPR006641 InterPro:IPR012337 Pfam:PF03652 SMART:SM00732
            EMBL:CP002684 GO:GO:0005737 GO:GO:0006281 GO:GO:0003676
            GO:GO:0006310 GO:GO:0016788 SUPFAM:SSF53098 KO:K07447
            Gene3D:3.30.420.140 HAMAP:MF_00651 TIGRFAMs:TIGR00250
            IPI:IPI00657456 RefSeq:NP_001031028.1 UniGene:At.47869
            ProteinModelPortal:F4IC62 SMR:F4IC62 EnsemblPlants:AT1G12244.1
            GeneID:3766708 KEGG:ath:AT1G12244 OMA:SKSERQN PhylomeDB:F4IC62
            Uniprot:F4IC62
        Length = 254

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 61/115 (53%), Positives = 76/115 (66%)

Query:     1 MCSLQSQHFLNSPLLIF--PKFNDNRKFHLNRTRNFGQRI----GALSSVEEFLPNATRR 54
             MCSL   H  +S  + F   K+ +    H  R    G R      A++S++E  PNA RR
Sbjct:    18 MCSL---HSFSSVAISFRTQKYVNTSLVH--RLSPIGYRNYPLPWAVTSIDEIPPNAVRR 72

Query:    55 KKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE 109
             K D  WRGGFSLGVDLGLSRTG+A+SKG+ V+PLTVLK RG+KLE +LLEIA+ E
Sbjct:    73 KIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLETRLLEIAEEE 127


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.141   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       137   0.00091  102 3  11 22  0.38    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.90u 0.14s 13.04t   Elapsed:  00:00:00
  Total cpu time:  12.90u 0.14s 13.04t   Elapsed:  00:00:00
  Start:  Thu May  9 17:07:50 2013   End:  Thu May  9 17:07:50 2013

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