BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032585
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6CFK6|RT09_YARLI 37S ribosomal protein S9, mitochondrial OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=MRPS9 PE=3 SV=1
Length = 319
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 47 FLPNATRRKKDSL----WRGG---FSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLE 99
F+ A R ++D+ WRGG + GVD+ +S T ++ V P T L+ G
Sbjct: 31 FVREAERAERDAQEAQKWRGGKKHLNFGVDMSISETPRGAAENVRVAPATALQYTGRGAH 90
Query: 100 LQLLEIAQR 108
Q +E+ R
Sbjct: 91 EQTMEVVNR 99
>sp|Q96MK2|FA65C_HUMAN Protein FAM65C OS=Homo sapiens GN=FAM65C PE=2 SV=4
Length = 946
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 36 QRIGALSSVEEFLPNATRRKKD-SLWRGGFSLGVDLGLSRTGL--ALSKGFCVRPLTVLK 92
+++G +S+EE +P A+R K LWRG G L T L L K F R
Sbjct: 669 EKVGKATSIEEIIPQASRTKGCLKLWRGCTGPGRVLSCPATTLLNQLKKTFQHR------ 722
Query: 93 LRGE---KLELQLLEIAQREVILGSYEPQLNLLSKKKLRWFYY 132
+RG+ +LE+ + ++ V G P L ++ + WF +
Sbjct: 723 VRGKYPGQLEIACRRLLEQVVSCGGLLPGAGLPEEQIITWFQF 765
>sp|A7HDE0|RUVX_ANADF Putative Holliday junction resolvase OS=Anaeromyxobacter sp.
(strain Fw109-5) GN=Anae109_2535 PE=3 SV=1
Length = 137
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQREVILGS 114
LG+DLG +R GLAL+ RPL+V++ R + +L + RE +G+
Sbjct: 4 LGLDLGRARIGLALADDVLRTARPLSVVRHRTREADLASIAATLREWEVGT 54
>sp|Q9PQR0|RL3_UREPA 50S ribosomal protein L3 OS=Ureaplasma parvum serovar 3 (strain
ATCC 700970) GN=rplC PE=3 SV=1
Length = 233
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 10 LNSPLL-IFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLP----NATRRKK-----DSL 59
LN PLL F K N + K H+ R+ +GA +V EF P NA K S+
Sbjct: 60 LNKPLLGQFKKANSDPKRHIKEFRDVVAEVGAELTVSEFEPGQLVNAQAYTKGHGFTGSI 119
Query: 60 WRGGFSLG 67
R FS+G
Sbjct: 120 KRHNFSMG 127
>sp|B1AIM0|RL3_UREP2 50S ribosomal protein L3 OS=Ureaplasma parvum serovar 3 (strain
ATCC 27815 / 27 / NCTC 11736) GN=rplC PE=3 SV=1
Length = 233
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 10 LNSPLL-IFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLP----NATRRKK-----DSL 59
LN PLL F K N + K H+ R+ +GA +V EF P NA K S+
Sbjct: 60 LNKPLLGQFKKANSDPKRHIKEFRDVVAEVGAELTVSEFEPGQLVNAQAYTKGHGFTGSI 119
Query: 60 WRGGFSLG 67
R FS+G
Sbjct: 120 KRHNFSMG 127
>sp|Q9L289|RUVC_STRCO Crossover junction endodeoxyribonuclease RuvC OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=ruvC
PE=3 SV=1
Length = 188
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKL 93
LGVD GL+R G+ + +G RPLT++ +
Sbjct: 4 LGVDPGLTRRGIGVVEGVAGRPLTMIGV 31
>sp|B5ZB40|RL3_UREU1 50S ribosomal protein L3 OS=Ureaplasma urealyticum serovar 10
(strain ATCC 33699 / Western) GN=rplC PE=3 SV=1
Length = 233
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 10 LNSPLL-IFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLP----NATRRKK-----DSL 59
LN PLL F K N + K H+ R+ +GA +V EF P NA K S+
Sbjct: 60 LNKPLLGQFKKANSDPKRHIKEFRDVVAEVGAELTVSEFEPGQLVNAQAYTKGHGFTGSI 119
Query: 60 WRGGFSLG 67
R FS+G
Sbjct: 120 KRHNFSMG 127
>sp|A1AZC8|RUVX_PARDP Putative Holliday junction resolvase OS=Paracoccus denitrificans
(strain Pd 1222) GN=Pden_0510 PE=3 SV=1
Length = 158
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 57 DSLWRGGFSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQ-LLEIAQREVILG 113
++L R G G+DLG G+A+S G PLTV++ + Q LL+I Q ++G
Sbjct: 11 EALPRTGAVAGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTADAQALLKIVQDRALVG 70
>sp|Q89A35|G6PI_BUCBP Glucose-6-phosphate isomerase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=pgi PE=3 SV=1
Length = 552
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 4 LQSQHFLNSPLLIFPKFNDNRKFHLNRTRNFGQRIGALS 42
L S F + L F KFN H+N + F +R+ ++S
Sbjct: 420 LLSHFFAQTQALAFGKFNQKCNVHINDKKTFDERLSSIS 458
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,929,967
Number of Sequences: 539616
Number of extensions: 1917983
Number of successful extensions: 3586
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3582
Number of HSP's gapped (non-prelim): 11
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)