BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032587
MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGA
KHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLA
LRILEVSKFYLGWYLTG

High Scoring Gene Products

Symbol, full name Information P value
RbcX1
AT4G04330 		protein from Arabidopsis thaliana 1.7e-34

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032587
        (137 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2134877 - symbol:RbcX1 "AT4G04330" species:370...   374  1.7e-34   1


>TAIR|locus:2134877 [details] [associations]
            symbol:RbcX1 "AT4G04330" species:3702 "Arabidopsis
            thaliana" [GO:0009409 "response to cold" evidence=IEP] [GO:0009414
            "response to water deprivation" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0044183 "protein binding involved in
            protein folding" evidence=IDA] [GO:0061077 "chaperone-mediated
            protein folding" evidence=IDA] [GO:0009718 "anthocyanin-containing
            compound biosynthetic process" evidence=RCA] EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0009651 GO:GO:0009409 GO:GO:0009414
            GO:GO:0044183 GO:GO:0009534 GO:GO:0061077 UniGene:At.34032
            UniGene:At.63645 InterPro:IPR003435 Pfam:PF02341 EMBL:AY045782
            EMBL:AY142573 IPI:IPI00532545 RefSeq:NP_567263.1
            ProteinModelPortal:Q94AU9 SMR:Q94AU9 IntAct:Q94AU9 STRING:Q94AU9
            PaxDb:Q94AU9 PRIDE:Q94AU9 EnsemblPlants:AT4G04330.1 GeneID:825753
            KEGG:ath:AT4G04330 TAIR:At4g04330 eggNOG:NOG304941
            HOGENOM:HOG000242810 InParanoid:Q94AU9 OMA:KMYVPGF PhylomeDB:Q94AU9
            ProtClustDB:CLSN2689337 Genevestigator:Q94AU9 Uniprot:Q94AU9
        Length = 174

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 78/130 (60%), Positives = 96/130 (73%)

Query:     3 TSSILPLPQLSFLSLRLNRNK-ASWPCNLQRSPRSTGTIHCQ-KMYVPGFGEASPEAKGA 60
             +SS+L    LS+L+ +  +    S+P  +Q S +   T  C  KMYVPGFGEASPEAK A
Sbjct:     4 SSSLLHHSYLSYLNPKFGKRPLVSYPL-MQSSRKCKQTRICSNKMYVPGFGEASPEAKAA 62

Query:    61 KHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLA 120
             KHLH+FFTY+AVRI++AQL+SYNPEAY EL EFL+ + ++DGDKFCA LMR SSRH  LA
Sbjct:    63 KHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLA 122

Query:   121 LRILEVSKFY 130
             LRILEV   Y
Sbjct:   123 LRILEVRSAY 132


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       137   0.00091  102 3  11 22  0.40    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.45u 0.07s 13.52t   Elapsed:  00:00:01
  Total cpu time:  13.45u 0.07s 13.52t   Elapsed:  00:00:01
  Start:  Thu May  9 17:09:24 2013   End:  Thu May  9 17:09:25 2013

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