BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032587
         (137 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GR2|A Chain A, Structure Of Atrbcx1 From Arabidopsis Thaliana.
 pdb|4GR2|B Chain B, Structure Of Atrbcx1 From Arabidopsis Thaliana
          Length = 128

 Score =  139 bits (350), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 73/86 (84%)

Query: 45  MYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDK 104
           MYVPGFGEASPEAK AKHLH+FFTY+AVRI++AQL+SYNPEAY EL EFL+ + ++DGDK
Sbjct: 1   MYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDK 60

Query: 105 FCADLMRESSRHKGLALRILEVSKFY 130
           F A LMR SSRH  LALRILEV   Y
Sbjct: 61  FLATLMRRSSRHMNLALRILEVRSAY 86


>pdb|2PEM|A Chain A, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEM|B Chain B, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEM|C Chain C, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEM|D Chain D, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEM|E Chain E, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEM|F Chain F, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEN|A Chain A, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEN|B Chain B, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEN|C Chain C, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEN|D Chain D, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEN|E Chain E, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEN|F Chain F, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEQ|A Chain A, Crystal Structure Of Rbcx, Crystal Form Ii
 pdb|2PEQ|B Chain B, Crystal Structure Of Rbcx, Crystal Form Ii
 pdb|2Z45|A Chain A, Crystal Structure Of Zn-bound Orf134
 pdb|2Z45|B Chain B, Crystal Structure Of Zn-bound Orf134
 pdb|2Z46|A Chain A, Crystal Structure Of Native-Orf134
 pdb|2Z46|B Chain B, Crystal Structure Of Native-Orf134
 pdb|2Z46|C Chain C, Crystal Structure Of Native-Orf134
 pdb|2Z46|D Chain D, Crystal Structure Of Native-Orf134
 pdb|2Z46|E Chain E, Crystal Structure Of Native-Orf134
 pdb|2Z46|F Chain F, Crystal Structure Of Native-Orf134
          Length = 134

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +   +M E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NKEL 67

Query: 120 ALRILEV 126
            LRIL V
Sbjct: 68  VLRILTV 74


>pdb|2PEK|A Chain A, Crystal Structure Of Rbcx Point Mutant Q29a
 pdb|2PEK|B Chain B, Crystal Structure Of Rbcx Point Mutant Q29a
 pdb|2PEK|C Chain C, Crystal Structure Of Rbcx Point Mutant Q29a
 pdb|2PEK|D Chain D, Crystal Structure Of Rbcx Point Mutant Q29a
 pdb|2PEK|E Chain E, Crystal Structure Of Rbcx Point Mutant Q29a
 pdb|2PEK|F Chain F, Crystal Structure Of Rbcx Point Mutant Q29a
          Length = 134

 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           + A  L ++ TY AVR+I+  L   NP     L EF +RHP+ + D +   +M E   +K
Sbjct: 9   ETAITLQSYLTYQAVRLISQALSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NK 65

Query: 118 GLALRILEV 126
            L LRIL V
Sbjct: 66  ELVLRILTV 74


>pdb|2Z44|A Chain A, Crystal Structure Of Selenomethionine-Labeled Orf134
          Length = 134

 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +      E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAXXLE---NKEL 67

Query: 120 ALRILEV 126
            LRIL V
Sbjct: 68  VLRILTV 74


>pdb|2PEI|A Chain A, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|B Chain B, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|C Chain C, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|D Chain D, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|E Chain E, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|F Chain F, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|G Chain G, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|H Chain H, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|I Chain I, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|J Chain J, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|K Chain K, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|L Chain L, Crystal Structure Of Selenomethionine-Labeled Rbcx
          Length = 109

 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +      E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAXXLE---NKEL 67

Query: 120 ALRILEV 126
            LRIL V
Sbjct: 68  VLRILTV 74


>pdb|2PEJ|A Chain A, Crystal Structure Of Rbcx Point Mutant Y17aY20L
 pdb|2PEJ|B Chain B, Crystal Structure Of Rbcx Point Mutant Y17aY20L
 pdb|2PEJ|C Chain C, Crystal Structure Of Rbcx Point Mutant Y17aY20L
 pdb|2PEJ|D Chain D, Crystal Structure Of Rbcx Point Mutant Y17aY20L
 pdb|2PEJ|E Chain E, Crystal Structure Of Rbcx Point Mutant Y17aY20L
 pdb|2PEJ|F Chain F, Crystal Structure Of Rbcx Point Mutant Y17aY20L
          Length = 134

 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L +  T  AVR+I+ QL   NP     L EF +RHP+ + D +   +M E   +K L
Sbjct: 11  AITLQSALTLQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NKEL 67

Query: 120 ALRILEV 126
            LRIL V
Sbjct: 68  VLRILTV 74


>pdb|2PY8|A Chain A, Rbcx
 pdb|2PY8|B Chain B, Rbcx
 pdb|2PY8|C Chain C, Rbcx
 pdb|2PY8|D Chain D, Rbcx
          Length = 147

 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
            K L ++ TY AV  I ++L   NP     L ++L  H + +G+ F  +L+ E   +K L
Sbjct: 11  VKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDE---NKEL 67

Query: 120 ALRILEV 126
            LRIL V
Sbjct: 68  VLRILAV 74


>pdb|3Q20|A Chain A, Crystal Structure Of Rbcx C103a Mutant From
           Thermosynechococcus Elongatus
 pdb|3Q20|B Chain B, Crystal Structure Of Rbcx C103a Mutant From
           Thermosynechococcus Elongatus
          Length = 126

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           +  K L ++ TY AVR +  QL   +P     L +F  +  + DG+++   L RE     
Sbjct: 9   QTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFRE---QP 65

Query: 118 GLALRILEVSK 128
            L  RIL V +
Sbjct: 66  DLGFRILTVRE 76


>pdb|4GR6|A Chain A, Crystal Structure Of Atrbcx2 From Arabidopsis Thaliana
 pdb|4GR6|B Chain B, Crystal Structure Of Atrbcx2 From Arabidopsis Thaliana
          Length = 126

 Score = 35.8 bits (81), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 46  YVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKF 105
           Y   FG+        K + N+FTY AVR +  QL   NP  Y      +  +   DG +F
Sbjct: 8   YDDTFGDVQ------KQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRF 61

Query: 106 CADLMRESSRHKGLALRILEVSKFYL 131
              L +ES     LA R++ +++ +L
Sbjct: 62  LRALGKESQE---LAERVM-ITRLHL 83


>pdb|2PEO|A Chain A, Crystal Structure Of Rbcx From Anabaena Ca
 pdb|2PEO|B Chain B, Crystal Structure Of Rbcx From Anabaena Ca
 pdb|2WVW|I Chain I, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|J Chain J, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|K Chain K, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|L Chain L, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|M Chain M, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|N Chain N, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|O Chain O, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|P Chain P, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|Q Chain Q, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|R Chain R, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|S Chain S, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|T Chain T, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|U Chain U, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|V Chain V, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|W Chain W, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|X Chain X, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|3HYB|A Chain A, Crystal Structure Of Rbcx From Anabaena, Crystal Form Ii
 pdb|3HYB|B Chain B, Crystal Structure Of Rbcx From Anabaena, Crystal Form Ii
 pdb|3RG6|C Chain C, Crystal Structure Of A Chaperone-Bound Assembly
           Intermediate Of Form I Rubisco
 pdb|3RG6|D Chain D, Crystal Structure Of A Chaperone-Bound Assembly
           Intermediate Of Form I Rubisco
 pdb|3RG6|E Chain E, Crystal Structure Of A Chaperone-Bound Assembly
           Intermediate Of Form I Rubisco
 pdb|3RG6|F Chain F, Crystal Structure Of A Chaperone-Bound Assembly
           Intermediate Of Form I Rubisco
          Length = 155

 Score = 35.4 bits (80), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           AK L ++ TY A+R + AQL   NP     L  F     + DG+K+  +L  E      L
Sbjct: 31  AKTLQSYLTYQALRTVLAQLGETNPPLALWLHNF-SAGKVQDGEKYIEELFLEKP---DL 86

Query: 120 ALRILEV 126
           ALRI+ V
Sbjct: 87  ALRIMTV 93


>pdb|3FZZ|A Chain A, Structure Of Grc
 pdb|3FZZ|B Chain B, Structure Of Grc
          Length = 227

 Score = 27.7 bits (60), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 21  RNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNF-FTYIAVRIITAQL 79
           R +A  P NL R  R+       + YV G+G+ +P+ +  K LH    T    ++  +Q 
Sbjct: 101 RTRAVRPLNLPR--RNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF 158

Query: 80  Q-SYN 83
           Q SYN
Sbjct: 159 QSSYN 163


>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
 pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
          Length = 227

 Score = 27.7 bits (60), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 21  RNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNF-FTYIAVRIITAQL 79
           R +A  P NL R  R+       + YV G+G+ +P+ +  K LH    T    ++  +Q 
Sbjct: 101 RTRAVRPLNLPR--RNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF 158

Query: 80  Q-SYN 83
           Q SYN
Sbjct: 159 QSSYN 163


>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
           I442h K494e K665r I749l Q753k E757q Mutant With
           Glutamate And Nacl At 1.24 Angstrom Resolution
 pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
           I442h K494e K665r I749l Q753k E757q Mutant With
           Glutamate And Nacl At 1.24 Angstrom Resolution
          Length = 259

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 98  PLNDGDKF---CADLMRESSRHKGLA--LRILEVSKF 129
           PL   D+F   C DL+RE S H G    +R++E  K+
Sbjct: 25  PLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKY 61


>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
           I442h K494e K665r I749l Q753k Mutant With Glutamate And
           Nacl At 1.32 Angstrom Resolution
 pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
           I442h K494e K665r I749l Q753k Mutant With Glutamate And
           Nacl At 1.32 Angstrom Resolution
          Length = 259

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 98  PLNDGDKF---CADLMRESSRHKGLA--LRILEVSKF 129
           PL   D+F   C DL+RE S H G    +R++E  K+
Sbjct: 25  PLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKY 61


>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
           I442h K494e I749l Q753k Mutant With Glutamate And Nacl
           At 1.37 Angstrom Resolution
 pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
           I442h K494e I749l Q753k Mutant With Glutamate And Nacl
           At 1.37 Angstrom Resolution
          Length = 259

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 98  PLNDGDKF---CADLMRESSRHKGLA--LRILEVSKF 129
           PL   D+F   C DL+RE S H G    +R++E  K+
Sbjct: 25  PLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKY 61


>pdb|1FPS|A Chain A, Crystal Structure Of Recombinant Farnesyl Diphosphate
           Synthase At 2.6 Angstroms Resolution
          Length = 348

 Score = 26.6 bits (57), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 14/82 (17%)

Query: 19  LNRNKASW---PCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRII 75
           +  NK SW    C LQR      T   +++    +G   PE K AK +   +  + +R  
Sbjct: 257 IQDNKCSWLVVQC-LQRV-----TPEQRQLLEDNYGRKEPE-KVAK-VKELYEAVGMR-- 306

Query: 76  TAQLQSYNPEAYKELMEFLERH 97
            A  Q Y   +Y+ L E +E+H
Sbjct: 307 -AAFQQYEESSYRRLQELIEKH 327


>pdb|3HLT|A Chain A, The Crystal Structure Of Human Haloacid
          Dehalogenase-Like Hydrolase Domain Containing 2 (Hdhd2)
 pdb|3HLT|C Chain C, The Crystal Structure Of Human Haloacid
          Dehalogenase-Like Hydrolase Domain Containing 2 (Hdhd2)
          Length = 266

 Score = 26.6 bits (57), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 37 TGTIHCQKMYVPGFGEASPEAKGAKHLHNFFT 68
          +GT+H +   VPG  EA    +GA  +  F T
Sbjct: 15 SGTLHIEDAAVPGAQEALKRLRGASVIIRFVT 46


>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
          Length = 367

 Score = 26.6 bits (57), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 14/82 (17%)

Query: 19  LNRNKASW---PCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRII 75
           +  NK SW    C LQR      T   +++    +G   PE K AK +   +  + +R  
Sbjct: 276 IQDNKCSWLVVQC-LQRV-----TPEQRQLLEDNYGRKEPE-KVAK-VKELYEAVGMR-- 325

Query: 76  TAQLQSYNPEAYKELMEFLERH 97
            A  Q Y   +Y+ L E +E+H
Sbjct: 326 -AAFQQYEESSYRRLQELIEKH 346


>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
 pdb|1UBW|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
 pdb|1UBY|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
          Length = 367

 Score = 26.6 bits (57), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 14/82 (17%)

Query: 19  LNRNKASW---PCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRII 75
           +  NK SW    C LQR      T   +++    +G   PE K AK +   +  + +R  
Sbjct: 276 IQDNKCSWLVVQC-LQRV-----TPEQRQLLEDNYGRKEPE-KVAK-VKELYEAVGMR-- 325

Query: 76  TAQLQSYNPEAYKELMEFLERH 97
            A  Q Y   +Y+ L E +E+H
Sbjct: 326 -AAFQQYEESSYRRLQELIEKH 346


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,041,185
Number of Sequences: 62578
Number of extensions: 152865
Number of successful extensions: 378
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 19
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)