BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032587
         (137 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8BL99|DOP1_MOUSE Protein dopey-1 OS=Mus musculus GN=Dopey1 PE=1 SV=2
          Length = 2399

 Score = 33.9 bits (76), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 66  FFTYIAVRIITAQLQSYNPEAYKELME-FLERHPLNDGDKFCADLMRESSRHKGLALRIL 124
           FF ++A+ +   QL    P+ +++ +E F + H L      C D++ +   HK   +R+ 
Sbjct: 867 FFKHVALTLWD-QLGDGTPQHHQKSVELFYQLHNLVPSSSICEDVVSQQLTHKDKKIRME 925

Query: 125 EVSKFYLGWYLT 136
             +KF + W+LT
Sbjct: 926 AHAKFAVLWHLT 937


>sp|Q5JWR5|DOP1_HUMAN Protein dopey-1 OS=Homo sapiens GN=DOPEY1 PE=2 SV=1
          Length = 2465

 Score = 33.9 bits (76), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 66  FFTYIAVRIITAQLQSYNPEAYKELME-FLERHPLNDGDKFCADLMRESSRHKGLALRIL 124
           FF ++A+ +   QL    P+ +++ +E F + H L      C D++ +   HK   +R+ 
Sbjct: 870 FFKHVALTLWD-QLGDGTPQHHQKSVELFYQLHNLVPSSSICEDVISQQLTHKDKKIRME 928

Query: 125 EVSKFYLGWYLT 136
             +KF + W+LT
Sbjct: 929 AHAKFAVLWHLT 940


>sp|P42218|KPSS5_ECOLX Capsule polysaccharide export protein KpsS OS=Escherichia coli
           GN=kpsS PE=4 SV=1
          Length = 389

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 63  LHNFFTYIAVR-IITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLAL 121
           + N  +Y  VR  I   + S++ +A KE    ++ HP++ G +    L++  S+  GL  
Sbjct: 240 IRNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGE 299

Query: 122 RILEV 126
           RIL V
Sbjct: 300 RILYV 304


>sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis
          thaliana GN=At5g53490 PE=1 SV=2
          Length = 236

 Score = 30.4 bits (67), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 12 LSFLSLRLNRNKASWP---CNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKH 62
          ++ L ++  RN+ S P    NL+R PRS  T+HC        GE     +G K 
Sbjct: 1  MASLPVQFTRNQISSPFFSVNLRREPRSLVTVHCSA------GENRENGEGVKK 48


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,088,397
Number of Sequences: 539616
Number of extensions: 1897424
Number of successful extensions: 3670
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3667
Number of HSP's gapped (non-prelim): 8
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)