Query 032588
Match_columns 137
No_of_seqs 138 out of 1128
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01807 GDX_N ubiquitin-like d 99.8 6.7E-19 1.4E-23 116.9 7.7 71 10-88 1-72 (74)
2 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 8.7E-19 1.9E-23 117.2 7.6 69 9-85 1-69 (73)
3 cd01797 NIRF_N amino-terminal 99.8 1.9E-18 4.1E-23 116.8 7.5 76 10-92 1-77 (78)
4 cd01805 RAD23_N Ubiquitin-like 99.8 4.9E-18 1.1E-22 112.7 8.4 73 10-90 1-76 (77)
5 cd01804 midnolin_N Ubiquitin-l 99.7 7.1E-18 1.5E-22 113.6 7.9 71 9-88 1-72 (78)
6 cd01790 Herp_N Homocysteine-re 99.7 8.9E-18 1.9E-22 114.3 6.6 72 9-87 1-78 (79)
7 cd01793 Fubi Fubi ubiquitin-li 99.7 2.8E-17 6.1E-22 109.2 7.9 69 10-88 1-70 (74)
8 cd01802 AN1_N ubiquitin-like d 99.7 3.7E-17 8.1E-22 115.9 8.4 74 7-88 25-99 (103)
9 cd01792 ISG15_repeat1 ISG15 ub 99.7 3.6E-17 7.8E-22 110.4 7.4 71 10-88 3-76 (80)
10 cd01794 DC_UbP_C dendritic cel 99.7 4.6E-17 1E-21 107.9 6.8 68 12-87 1-68 (70)
11 PTZ00044 ubiquitin; Provisiona 99.7 8.4E-17 1.8E-21 106.6 7.8 70 10-87 1-70 (76)
12 cd01810 ISG15_repeat2 ISG15 ub 99.7 7.1E-17 1.5E-21 107.2 7.0 68 12-87 1-69 (74)
13 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.6E-16 3.4E-21 104.6 8.2 70 10-87 1-71 (76)
14 cd01798 parkin_N amino-termina 99.7 8.2E-17 1.8E-21 105.7 6.6 67 12-86 1-68 (70)
15 cd01808 hPLIC_N Ubiquitin-like 99.7 1.5E-16 3.1E-21 104.9 7.5 69 10-87 1-70 (71)
16 cd01809 Scythe_N Ubiquitin-lik 99.7 1.8E-16 3.9E-21 103.3 7.6 69 10-86 1-69 (72)
17 cd01803 Ubiquitin Ubiquitin. U 99.7 1.9E-16 4.1E-21 104.3 7.6 70 10-87 1-70 (76)
18 PF00240 ubiquitin: Ubiquitin 99.7 1.2E-16 2.6E-21 103.8 6.5 68 15-90 1-68 (69)
19 cd01812 BAG1_N Ubiquitin-like 99.7 2.1E-16 4.6E-21 103.1 6.8 70 10-88 1-70 (71)
20 cd01796 DDI1_N DNA damage indu 99.7 2E-16 4.3E-21 104.7 6.6 67 12-86 1-69 (71)
21 cd01813 UBP_N UBP ubiquitin pr 99.7 2.5E-16 5.4E-21 105.4 6.9 70 10-88 1-73 (74)
22 TIGR00601 rad23 UV excision re 99.6 3.7E-15 8E-20 126.4 8.3 74 10-91 1-78 (378)
23 smart00213 UBQ Ubiquitin homol 99.6 1.2E-14 2.6E-19 91.9 6.5 64 10-82 1-64 (64)
24 cd01800 SF3a120_C Ubiquitin-li 99.5 1.7E-14 3.7E-19 96.4 6.7 62 21-89 8-69 (76)
25 cd01763 Sumo Small ubiquitin-r 99.5 1E-13 2.2E-18 95.1 9.3 76 4-87 6-82 (87)
26 KOG0010 Ubiquitin-like protein 99.5 2.2E-14 4.7E-19 124.0 6.9 72 9-89 15-87 (493)
27 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 5.9E-14 1.3E-18 94.6 5.2 52 29-87 19-73 (75)
28 KOG0005 Ubiquitin-like protein 99.5 3.4E-14 7.3E-19 92.0 3.7 67 10-84 1-67 (70)
29 cd01799 Hoil1_N Ubiquitin-like 99.4 6.4E-13 1.4E-17 89.2 6.9 67 11-86 4-72 (75)
30 cd01814 NTGP5 Ubiquitin-like N 99.4 6.1E-13 1.3E-17 95.8 6.8 80 7-91 2-92 (113)
31 cd01769 UBL Ubiquitin-like dom 99.4 1.7E-12 3.7E-17 82.9 6.9 67 14-88 2-68 (69)
32 KOG0011 Nucleotide excision re 99.4 8.7E-13 1.9E-17 109.5 6.9 74 10-91 1-77 (340)
33 KOG0004 Ubiquitin/40S ribosoma 99.3 8.7E-13 1.9E-17 99.4 4.2 71 10-88 1-72 (156)
34 KOG0003 Ubiquitin/60s ribosoma 99.3 3.5E-13 7.6E-18 96.5 1.1 70 10-87 1-71 (128)
35 cd01789 Alp11_N Ubiquitin-like 99.2 9.3E-11 2E-15 80.1 8.5 74 10-90 2-83 (84)
36 PF11976 Rad60-SLD: Ubiquitin- 99.2 5.2E-11 1.1E-15 77.9 5.5 69 10-86 1-71 (72)
37 cd01795 USP48_C USP ubiquitin- 99.1 1.5E-10 3.1E-15 82.0 6.4 63 23-91 17-80 (107)
38 cd01801 Tsc13_N Ubiquitin-like 99.1 1.9E-10 4.1E-15 77.0 6.1 70 10-87 1-75 (77)
39 PLN02560 enoyl-CoA reductase 99.1 3.5E-10 7.7E-15 93.8 7.8 72 10-89 1-83 (308)
40 PF14560 Ubiquitin_2: Ubiquiti 98.9 3.4E-09 7.3E-14 72.3 7.2 77 9-88 1-82 (87)
41 KOG4248 Ubiquitin-like protein 98.9 3.4E-09 7.4E-14 98.3 6.2 79 10-98 3-81 (1143)
42 PF13881 Rad60-SLD_2: Ubiquiti 98.8 3.8E-08 8.3E-13 70.8 9.9 69 8-83 1-76 (111)
43 PF11543 UN_NPL4: Nuclear pore 98.7 1.8E-08 3.9E-13 68.5 5.2 75 8-87 3-78 (80)
44 KOG0001 Ubiquitin and ubiquiti 98.7 1.6E-07 3.4E-12 59.1 8.6 68 12-87 2-70 (75)
45 KOG1872 Ubiquitin-specific pro 98.6 1.2E-07 2.5E-12 82.2 8.1 72 9-89 3-75 (473)
46 cd01788 ElonginB Ubiquitin-lik 98.6 1.1E-07 2.4E-12 68.7 5.8 70 12-88 3-80 (119)
47 cd00196 UBQ Ubiquitin-like pro 98.5 8.7E-07 1.9E-11 52.5 6.6 58 23-87 10-67 (69)
48 KOG0006 E3 ubiquitin-protein l 98.2 4.7E-06 1E-10 70.0 6.4 65 19-90 12-77 (446)
49 PF10302 DUF2407: DUF2407 ubiq 97.9 4E-05 8.6E-10 53.9 6.3 56 12-67 3-60 (97)
50 KOG3249 Uncharacterized conser 97.7 2.6E-05 5.5E-10 59.8 2.5 81 33-125 8-88 (181)
51 cd01811 OASL_repeat1 2'-5' oli 97.5 0.00079 1.7E-08 45.6 7.8 66 10-84 1-71 (80)
52 KOG1769 Ubiquitin-like protein 97.5 0.0012 2.7E-08 46.6 8.5 72 9-88 20-92 (99)
53 KOG4495 RNA polymerase II tran 97.4 0.00015 3.2E-09 51.3 3.3 63 12-81 3-67 (110)
54 KOG3493 Ubiquitin-like protein 97.4 5.7E-05 1.2E-09 49.8 1.0 67 10-84 2-68 (73)
55 PF00789 UBX: UBX domain; Int 97.3 0.002 4.3E-08 42.8 8.0 76 5-86 2-80 (82)
56 PF08817 YukD: WXG100 protein 97.2 0.001 2.2E-08 44.4 5.3 69 10-86 3-78 (79)
57 KOG4583 Membrane-associated ER 97.1 0.00031 6.8E-09 59.3 2.5 86 1-91 1-90 (391)
58 KOG3206 Alpha-tubulin folding 96.9 0.003 6.5E-08 50.3 6.4 112 9-125 1-119 (234)
59 KOG1639 Steroid reductase requ 96.8 0.0019 4.1E-08 52.8 4.9 74 10-89 1-79 (297)
60 smart00166 UBX Domain present 96.8 0.016 3.4E-07 38.6 8.4 74 8-86 3-78 (80)
61 cd01774 Faf1_like2_UBX Faf1 ik 96.6 0.031 6.7E-07 38.2 9.1 77 7-87 2-83 (85)
62 COG5417 Uncharacterized small 96.6 0.015 3.2E-07 39.4 6.8 69 10-84 7-78 (81)
63 cd01767 UBX UBX (ubiquitin reg 96.5 0.047 1E-06 36.0 8.9 71 9-86 2-74 (77)
64 PF11470 TUG-UBL1: GLUT4 regul 96.1 0.017 3.8E-07 37.8 5.0 55 23-84 9-63 (65)
65 cd01770 p47_UBX p47-like ubiqu 95.9 0.073 1.6E-06 35.7 7.7 67 8-81 3-72 (79)
66 cd01772 SAKS1_UBX SAKS1-like U 95.9 0.11 2.4E-06 34.7 8.5 72 9-86 4-77 (79)
67 KOG0013 Uncharacterized conser 95.6 0.024 5.2E-07 45.3 5.0 54 23-83 159-212 (231)
68 cd01771 Faf1_UBX Faf1 UBX doma 95.5 0.22 4.7E-06 33.6 8.8 73 8-86 3-77 (80)
69 cd01773 Faf1_like1_UBX Faf1 ik 95.0 0.43 9.4E-06 32.6 9.0 75 7-87 3-79 (82)
70 COG5227 SMT3 Ubiquitin-like pr 94.8 0.15 3.3E-06 35.8 6.4 68 9-84 24-91 (103)
71 PF13019 Telomere_Sde2: Telome 94.7 0.15 3.2E-06 39.1 6.8 51 10-62 1-56 (162)
72 PF15044 CLU_N: Mitochondrial 93.0 0.27 5.8E-06 32.9 4.8 58 27-90 1-59 (76)
73 cd06406 PB1_P67 A PB1 domain i 92.8 0.39 8.5E-06 32.7 5.5 38 22-61 12-49 (80)
74 PRK06437 hypothetical protein; 92.8 1.1 2.4E-05 29.0 7.4 48 23-86 13-61 (67)
75 PLN02799 Molybdopterin synthas 92.7 0.56 1.2E-05 31.0 6.1 66 9-86 1-75 (82)
76 KOG0012 DNA damage inducible p 92.5 0.18 3.8E-06 43.2 4.2 62 23-89 15-76 (380)
77 smart00666 PB1 PB1 domain. Pho 92.5 0.43 9.4E-06 31.2 5.3 45 10-58 2-46 (81)
78 cd06409 PB1_MUG70 The MUG70 pr 91.5 0.52 1.1E-05 32.5 4.8 44 11-57 2-48 (86)
79 KOG2982 Uncharacterized conser 91.1 0.77 1.7E-05 39.3 6.4 61 25-87 352-415 (418)
80 PF00564 PB1: PB1 domain; Int 91.0 0.56 1.2E-05 30.7 4.5 48 9-59 1-48 (84)
81 PRK08364 sulfur carrier protei 90.8 3.1 6.7E-05 26.9 8.3 60 9-86 4-64 (70)
82 cd06407 PB1_NLP A PB1 domain i 89.3 0.95 2.1E-05 30.7 4.6 44 13-58 2-46 (82)
83 cd00754 MoaD Ubiquitin domain 89.1 2.5 5.4E-05 27.2 6.4 51 23-85 18-72 (80)
84 PRK01777 hypothetical protein; 88.8 4.9 0.00011 28.0 8.0 62 9-86 3-74 (95)
85 PF14732 UAE_UbL: Ubiquitin/SU 88.7 1.8 3.8E-05 29.6 5.7 59 25-86 2-66 (87)
86 PRK05863 sulfur carrier protei 88.5 2.4 5.2E-05 27.1 5.9 50 24-86 9-59 (65)
87 PRK07440 hypothetical protein; 88.2 3.9 8.4E-05 26.7 6.8 61 8-86 3-64 (70)
88 PF14453 ThiS-like: ThiS-like 87.4 4.6 9.9E-05 25.8 6.6 46 24-87 9-54 (57)
89 cd05992 PB1 The PB1 domain is 86.3 2.2 4.8E-05 27.6 4.9 45 11-59 2-47 (81)
90 PF08783 DWNN: DWNN domain; I 85.6 1.7 3.8E-05 29.1 4.1 39 13-51 2-41 (74)
91 cd00565 ThiS ThiaminS ubiquiti 85.3 3.8 8.2E-05 25.9 5.5 51 24-86 8-59 (65)
92 PRK05659 sulfur carrier protei 84.7 5.6 0.00012 25.0 6.1 51 24-86 9-60 (66)
93 TIGR01683 thiS thiamine biosyn 84.2 4.5 9.7E-05 25.5 5.5 51 24-86 7-58 (64)
94 TIGR01682 moaD molybdopterin c 83.9 8.8 0.00019 25.0 7.0 52 23-86 18-74 (80)
95 COG2104 ThiS Sulfur transfer p 83.4 9.3 0.0002 25.0 6.8 52 24-87 11-63 (68)
96 cd06411 PB1_p51 The PB1 domain 81.5 2.7 5.9E-05 28.5 3.8 35 23-59 9-43 (78)
97 PRK06083 sulfur carrier protei 81.0 8.7 0.00019 26.1 6.2 51 24-86 27-78 (84)
98 KOG2086 Protein tyrosine phosp 78.5 7.7 0.00017 33.5 6.4 68 8-81 304-373 (380)
99 PRK07696 sulfur carrier protei 77.1 15 0.00033 23.5 6.2 50 25-86 10-61 (67)
100 PRK06488 sulfur carrier protei 76.2 14 0.0003 23.2 5.7 45 30-86 14-59 (65)
101 cd06408 PB1_NoxR The PB1 domai 76.1 13 0.00029 25.6 5.9 46 12-60 3-48 (86)
102 cd06410 PB1_UP2 Uncharacterize 75.3 9.2 0.0002 26.7 5.1 40 14-57 17-56 (97)
103 PF02597 ThiS: ThiS family; I 75.2 7 0.00015 24.8 4.2 55 23-86 14-70 (77)
104 TIGR02958 sec_mycoba_snm4 secr 75.1 21 0.00046 31.3 8.4 76 10-94 3-86 (452)
105 PF12436 USP7_ICP0_bdg: ICP0-b 75.0 5.7 0.00012 31.9 4.5 77 7-90 66-153 (249)
106 PF14836 Ubiquitin_3: Ubiquiti 74.4 16 0.00036 25.2 6.1 60 23-89 16-80 (88)
107 PF12754 Blt1: Cell-cycle cont 73.5 1.1 2.3E-05 37.7 0.0 60 7-67 76-153 (309)
108 cd06398 PB1_Joka2 The PB1 doma 73.4 9.4 0.0002 26.3 4.7 44 12-59 3-52 (91)
109 smart00295 B41 Band 4.1 homolo 73.3 10 0.00023 28.1 5.4 47 8-57 2-49 (207)
110 PRK08053 sulfur carrier protei 72.3 22 0.00047 22.5 6.4 51 24-86 9-60 (66)
111 cd06396 PB1_NBR1 The PB1 domai 72.1 9.9 0.00022 25.9 4.5 35 13-49 2-38 (81)
112 TIGR01687 moaD_arch MoaD famil 71.3 26 0.00057 23.0 7.7 53 23-86 18-81 (88)
113 PF08337 Plexin_cytopl: Plexin 70.8 20 0.00043 32.4 7.3 81 8-88 188-289 (539)
114 cd01760 RBD Ubiquitin-like dom 70.0 17 0.00037 24.0 5.2 43 14-59 4-46 (72)
115 PF10209 DUF2340: Uncharacteri 69.9 15 0.00033 26.9 5.3 61 26-86 21-106 (122)
116 COG5100 NPL4 Nuclear pore prot 69.4 26 0.00056 31.1 7.4 74 10-88 1-78 (571)
117 PF14451 Ub-Mut7C: Mut7-C ubiq 69.1 31 0.00066 23.3 6.4 48 23-86 25-73 (81)
118 KOG4250 TANK binding protein k 68.4 18 0.00039 33.8 6.6 52 10-63 314-365 (732)
119 cd01666 TGS_DRG_C TGS_DRG_C: 67.9 14 0.0003 24.6 4.4 33 10-42 2-36 (75)
120 KOG2561 Adaptor protein NUB1, 65.9 2 4.3E-05 38.2 0.0 73 10-89 36-111 (568)
121 PRK06944 sulfur carrier protei 65.7 29 0.00064 21.4 6.3 50 24-86 9-59 (65)
122 smart00455 RBD Raf-like Ras-bi 64.3 27 0.00058 22.7 5.2 41 16-59 6-46 (70)
123 PRK11840 bifunctional sulfur c 62.7 30 0.00065 29.4 6.5 51 24-86 9-60 (326)
124 PF12436 USP7_ICP0_bdg: ICP0-b 59.9 23 0.00049 28.4 5.1 46 9-56 176-223 (249)
125 PF09662 Phenyl_P_gamma: Pheny 58.4 15 0.00032 25.2 3.2 49 6-63 16-64 (84)
126 PF11834 DUF3354: Domain of un 58.3 14 0.00029 24.4 3.0 43 31-86 26-68 (69)
127 PF11620 GABP-alpha: GA-bindin 56.9 29 0.00064 24.0 4.5 54 24-84 6-59 (88)
128 PF00794 PI3K_rbd: PI3-kinase 56.6 35 0.00075 23.5 5.0 36 7-42 14-49 (106)
129 PF14533 USP7_C2: Ubiquitin-sp 55.1 47 0.001 26.0 6.1 38 23-62 36-78 (213)
130 PF02824 TGS: TGS domain; Int 53.1 25 0.00054 21.9 3.5 58 12-86 1-59 (60)
131 PRK11130 moaD molybdopterin sy 53.1 62 0.0013 21.1 6.7 48 25-84 19-72 (81)
132 PF09379 FERM_N: FERM N-termin 52.0 15 0.00032 23.5 2.4 40 15-57 2-42 (80)
133 cd06397 PB1_UP1 Uncharacterize 51.2 42 0.00091 23.0 4.5 44 11-58 2-45 (82)
134 PF03671 Ufm1: Ubiquitin fold 50.2 77 0.0017 21.4 5.8 62 16-84 10-73 (76)
135 PF02017 CIDE-N: CIDE-N domain 50.0 78 0.0017 21.3 6.2 49 12-65 5-55 (78)
136 cd01768 RA RA (Ras-associating 49.6 65 0.0014 20.9 5.3 32 23-56 15-48 (87)
137 cd01787 GRB7_RA RA (RAS-associ 48.3 55 0.0012 22.5 4.8 39 11-52 4-42 (85)
138 PF00788 RA: Ras association ( 47.3 75 0.0016 20.4 5.5 32 23-56 19-52 (93)
139 KOG3439 Protein conjugation fa 44.9 85 0.0018 22.8 5.5 75 8-84 29-106 (116)
140 PF12911 OppC_N: N-terminal TM 44.6 14 0.0003 22.4 1.3 18 117-134 1-18 (56)
141 smart00144 PI3K_rbd PI3-kinase 43.1 73 0.0016 22.3 5.0 36 7-42 15-50 (108)
142 PF08825 E2_bind: E2 binding d 42.4 41 0.0009 22.8 3.5 58 25-86 1-68 (84)
143 KOG3391 Transcriptional co-rep 41.2 26 0.00056 26.4 2.5 25 67-91 114-139 (151)
144 PRK10872 relA (p)ppGpp synthet 41.0 99 0.0021 29.1 6.7 62 11-89 405-467 (743)
145 PF02192 PI3K_p85B: PI3-kinase 40.9 27 0.00058 23.5 2.3 20 23-42 2-21 (78)
146 cd01775 CYR1_RA Ubiquitin doma 40.3 1.2E+02 0.0026 21.4 5.6 41 13-56 6-47 (97)
147 PTZ00380 microtubule-associate 39.2 33 0.00071 25.1 2.7 34 26-62 46-79 (121)
148 cd06404 PB1_aPKC PB1 domain is 38.7 59 0.0013 22.3 3.8 43 13-57 2-45 (83)
149 cd01776 Rin1_RA Ubiquitin doma 38.6 61 0.0013 22.4 3.8 32 23-56 16-48 (87)
150 PF00276 Ribosomal_L23: Riboso 37.2 52 0.0011 22.4 3.3 39 23-63 23-62 (91)
151 TIGR00691 spoT_relA (p)ppGpp s 37.1 1.1E+02 0.0024 28.3 6.4 63 10-89 360-423 (683)
152 cd01612 APG12_C Ubiquitin-like 37.0 1.3E+02 0.0029 20.3 6.2 50 10-61 2-54 (87)
153 cd01817 RGS12_RBD Ubiquitin do 36.5 1.2E+02 0.0027 20.2 4.9 42 17-61 7-48 (73)
154 KOG2507 Ubiquitin regulatory p 36.3 97 0.0021 27.7 5.5 82 8-94 313-396 (506)
155 smart00143 PI3K_p85B PI3-kinas 36.2 33 0.00072 23.2 2.2 20 23-42 2-21 (78)
156 PF11069 DUF2870: Protein of u 35.6 59 0.0013 23.0 3.4 33 54-91 3-36 (98)
157 PF03658 Ub-RnfH: RnfH family 34.6 1.5E+02 0.0033 20.2 6.5 66 10-87 1-72 (84)
158 smart00314 RA Ras association 33.8 1.4E+02 0.003 19.5 5.9 32 23-56 18-51 (90)
159 PF10407 Cytokin_check_N: Cdc1 33.7 1.4E+02 0.0031 19.8 5.0 38 23-64 5-43 (73)
160 PRK05738 rplW 50S ribosomal pr 32.0 1.2E+02 0.0026 20.7 4.5 38 23-62 23-61 (92)
161 cd01764 Urm1 Urm1-like ubuitin 32.0 1.1E+02 0.0023 21.0 4.3 55 26-86 24-87 (94)
162 cd02639 R3H_RRM R3H domain of 31.4 34 0.00073 21.9 1.5 32 102-135 12-43 (60)
163 PF14533 USP7_C2: Ubiquitin-sp 31.2 35 0.00077 26.6 2.0 36 23-60 135-175 (213)
164 KOG0313 Microtubule binding pr 31.2 90 0.002 27.4 4.5 83 4-89 2-91 (423)
165 KOG2689 Predicted ubiquitin re 29.7 2.1E+02 0.0044 24.0 6.2 74 8-86 209-284 (290)
166 KOG2013 SMT3/SUMO-activating c 29.6 1.2E+02 0.0025 27.7 5.0 62 23-87 445-509 (603)
167 cd01777 SNX27_RA Ubiquitin dom 28.3 1.1E+02 0.0025 21.0 3.8 42 10-54 2-43 (87)
168 KOG0007 Splicing factor 3a, su 27.7 30 0.00065 29.1 1.1 41 23-65 295-336 (341)
169 smart00266 CAD Domains present 27.1 2E+02 0.0043 19.2 6.3 39 25-66 14-54 (74)
170 KOG1364 Predicted ubiquitin re 26.8 82 0.0018 27.1 3.5 70 10-84 278-350 (356)
171 PF07929 PRiA4_ORF3: Plasmid p 26.5 99 0.0021 23.1 3.6 42 9-52 4-47 (179)
172 PF02991 Atg8: Autophagy prote 26.2 1.1E+02 0.0024 21.5 3.5 37 25-63 37-74 (104)
173 COG1153 FwdD Formylmethanofura 25.5 30 0.00066 25.5 0.6 18 71-88 38-55 (128)
174 COG1977 MoaD Molybdopterin con 24.9 1E+02 0.0022 20.5 3.1 46 30-86 27-77 (84)
175 COG5222 Uncharacterized conser 24.7 4.1E+02 0.0089 22.8 7.2 54 8-63 3-57 (427)
176 PF09014 Sushi_2: Beta-2-glyco 24.1 35 0.00075 23.5 0.6 34 45-84 3-36 (85)
177 cd01766 Ufm1 Urm1-like ubiquit 23.7 2.4E+02 0.0053 19.1 6.3 63 17-86 11-76 (82)
178 COG0317 SpoT Guanosine polypho 23.7 2.3E+02 0.005 26.6 6.0 65 10-91 387-452 (701)
179 PRK11092 bifunctional (p)ppGpp 23.6 2.4E+02 0.0053 26.3 6.2 61 11-88 387-448 (702)
180 PRK10113 cell division modulat 23.0 40 0.00086 22.5 0.7 15 111-125 58-72 (80)
181 cd01782 AF6_RA_repeat1 Ubiquit 22.9 2.3E+02 0.005 20.5 4.7 40 8-49 22-62 (112)
182 cd06539 CIDE_N_A CIDE_N domain 22.9 2.5E+02 0.0054 19.0 6.1 49 31-88 21-71 (78)
183 cd01615 CIDE_N CIDE_N domain, 22.8 2.5E+02 0.0054 18.9 6.4 40 24-66 15-56 (78)
184 TIGR02725 phenyl_P_gamma pheny 21.6 83 0.0018 21.0 2.0 48 6-62 16-63 (84)
185 PF02196 RBD: Raf-like Ras-bin 21.6 2.3E+02 0.0051 18.2 5.5 40 17-59 8-47 (71)
186 PF02037 SAP: SAP domain; Int 21.1 1.1E+02 0.0024 17.0 2.3 19 30-51 3-21 (35)
187 KOG4361 BCL2-associated athano 20.5 62 0.0014 27.7 1.6 71 9-87 61-136 (344)
188 cd02413 40S_S3_KH K homology R 20.5 2.7E+02 0.0059 18.4 5.5 43 8-55 30-72 (81)
189 PF10790 DUF2604: Protein of U 20.3 2.7E+02 0.0059 18.4 6.1 59 23-86 8-68 (76)
No 1
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.78 E-value=6.7e-19 Score=116.90 Aligned_cols=71 Identities=27% Similarity=0.374 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~~ 88 (137)
|+|+||+.+|.. +.++|++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|||++|++| ++..
T Consensus 1 m~i~vk~~~G~~-~~l~v~~~~tV~~lK~~i~~--~~gi~~~~q~L~~~G~~L~d~~~-----L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 1 MFLTVKLLQGRE-CSLQVSEKESVSTLKKLVSE--HLNVPEEQQRLLFKGKALADDKR-----LSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEECCCCCC-----HHHCCCCCCCEEEEEEc
Confidence 789999998865 88999999999999999999 99999999999999999999988 999999999999 5443
No 2
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.78 E-value=8.7e-19 Score=117.25 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=64.8
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
+|.|+||+..|+. +.++++++.||++||++|++ ..|+|+++|||+|.|+.|+|+.+ |++|||++|++|.
T Consensus 1 ~~~i~vkt~~Gk~-~~~~v~~~~TV~~LK~~I~~--~~~~~~~~qrLi~~Gk~L~D~~t-----L~~ygi~~~stv~ 69 (73)
T cd01791 1 MIEVVCNDRLGKK-VRVKCNPDDTIGDLKKLIAA--QTGTRPEKIVLKKWYTIFKDHIS-----LGDYEIHDGMNLE 69 (73)
T ss_pred CEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCChHHEEEEeCCcCCCCCCC-----HHHcCCCCCCEEE
Confidence 5899999998866 88999999999999999998 88999999999999999999888 9999999999994
No 3
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.76 E-value=1.9e-18 Score=116.76 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032588 10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~-v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~ 88 (137)
|+|+||+.+|...+.++ ++++.||++||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|||++|++|.+..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~--~~gi~~~~QrLi~~Gk~L~D~~t-----L~~y~i~~~~~i~l~~ 73 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQE--LFNVEPECQRLFYRGKQMEDGHT-----LFDYNVGLNDIIQLLV 73 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHH--HhCCCHHHeEEEeCCEECCCCCC-----HHHcCCCCCCEEEEEE
Confidence 78999999997535674 8899999999999998 99999999999999999999999 9999999999996555
Q ss_pred cCCC
Q 032588 89 KPKP 92 (137)
Q Consensus 89 ~p~~ 92 (137)
++.|
T Consensus 74 ~~~~ 77 (78)
T cd01797 74 RQDP 77 (78)
T ss_pred ecCC
Confidence 5443
No 4
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.75 E-value=4.9e-18 Score=112.71 Aligned_cols=73 Identities=26% Similarity=0.398 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCC--CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHL--PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~i--p~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
|+|+||+.++.. +.++++++.||++||++|++ .+|+ |+++|||+|+|+.|.|+.+ |++|||++|++| ++
T Consensus 1 m~i~vk~~~g~~-~~l~v~~~~TV~~lK~~i~~--~~~i~~~~~~q~L~~~G~~L~d~~~-----L~~~~i~~~~~i~~~ 72 (77)
T cd01805 1 MKITFKTLKQQT-FPIEVDPDDTVAELKEKIEE--EKGCDYPPEQQKLIYSGKILKDDTT-----LEEYKIDEKDFVVVM 72 (77)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--hhCCCCChhHeEEEECCEEccCCCC-----HHHcCCCCCCEEEEE
Confidence 789999999865 88999999999999999999 8998 9999999999999998888 999999999999 55
Q ss_pred EecC
Q 032588 87 AVKP 90 (137)
Q Consensus 87 ~~~p 90 (137)
..+|
T Consensus 73 ~~~~ 76 (77)
T cd01805 73 VSKP 76 (77)
T ss_pred EecC
Confidence 5555
No 5
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.74 E-value=7.1e-18 Score=113.62 Aligned_cols=71 Identities=23% Similarity=0.310 Sum_probs=65.1
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
.|+|+||+..|.. +.+++++++||++||++|++ ..++|+++|||+|+|+.|+|+ + |++|||++|++| +|.
T Consensus 1 ~m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~~~~~~~qrL~~~Gk~L~d~-~-----L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 1 PMNLNIHSTTGTR-FDLSVPPDETVEGLKKRISQ--RLKVPKERLALLHRETRLSSG-K-----LQDLGLGDGSKLTLVP 71 (78)
T ss_pred CeEEEEEECCCCE-EEEEECCcCHHHHHHHHHHH--HhCCChHHEEEEECCcCCCCC-c-----HHHcCCCCCCEEEEEe
Confidence 3899999998866 88999999999999999998 889999999999999999987 7 999999999999 544
Q ss_pred e
Q 032588 88 V 88 (137)
Q Consensus 88 ~ 88 (137)
.
T Consensus 72 ~ 72 (78)
T cd01804 72 T 72 (78)
T ss_pred e
Confidence 3
No 6
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.73 E-value=8.9e-18 Score=114.26 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=62.2
Q ss_pred ceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCC--CCCCCceEEEecCeecCCCCCCCCCCccccC--CCCCCE
Q 032588 9 SVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSAN--HLPIENLRLVFRGKVLDDTQDDDDRDDVYLQ--LSNGDS 83 (137)
Q Consensus 9 ~m~I~VKt~~~~~-~~~l~v~~~~TV~dLK~~Ia~~~~~--~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~--I~dg~t 83 (137)
.|+|+||+++++. .+.+++++++||++||++|++ .. .+++++|||||+||+|+|+.+ |++|. +.+|++
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~--~~~~~~~~~~QrLIy~GKiLkD~~t-----L~~~~~~~~~~~t 73 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSR--VYPSKPLEQDQRLIYSGKLLPDHLK-----LRDVLRKQDEYHM 73 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHH--hcCCCCChhHeEEEEcCeeccchhh-----HHHHhhcccCCce
Confidence 3789999999876 244556899999999999998 55 366899999999999999988 99996 999999
Q ss_pred E-EEE
Q 032588 84 V-IAA 87 (137)
Q Consensus 84 L-lv~ 87 (137)
| ||+
T Consensus 74 iHLV~ 78 (79)
T cd01790 74 VHLVC 78 (79)
T ss_pred EEEEe
Confidence 9 776
No 7
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.72 E-value=2.8e-17 Score=109.17 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=63.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~~ 88 (137)
|+|+||+. .++.++|+++.||++||++|++ ..|+|+++|||+|+|+.|.|+.+ |++|+|+++++| ++..
T Consensus 1 mqi~vk~~---~~~~l~v~~~~tV~~lK~~i~~--~~gip~~~q~Li~~Gk~L~D~~t-----L~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 1 MQLFVRAQ---NTHTLEVTGQETVSDIKAHVAG--LEGIDVEDQVLLLAGVPLEDDAT-----LGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEECC---CEEEEEECCcCcHHHHHHHHHh--hhCCCHHHEEEEECCeECCCCCC-----HHHcCCCCCCEEEEEEe
Confidence 78999984 3378999999999999999998 99999999999999999999988 999999999999 5544
No 8
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.71 E-value=3.7e-17 Score=115.92 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=68.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
.+.|+|+||+.+|.. +.++|++++||.+||++|++ ..|+|+++|||+|+|+.|+|+.+ |++|+|++|++| +
T Consensus 25 ~~~M~I~Vk~l~G~~-~~leV~~~~TV~~lK~kI~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dy~I~~~stL~l 96 (103)
T cd01802 25 YDTMELFIETLTGTC-FELRVSPFETVISVKAKIQR--LEGIPVAQQHLIWNNMELEDEYC-----LNDYNISEGCTLKL 96 (103)
T ss_pred CCCEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCChHHEEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 357999999999876 88999999999999999998 99999999999999999999988 999999999999 5
Q ss_pred EEe
Q 032588 86 AAV 88 (137)
Q Consensus 86 v~~ 88 (137)
+..
T Consensus 97 ~~~ 99 (103)
T cd01802 97 VLA 99 (103)
T ss_pred EEe
Confidence 443
No 9
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=3.6e-17 Score=110.37 Aligned_cols=71 Identities=25% Similarity=0.310 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRL--i~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
|+|+||+.+|.. +.++++++.||++||++|++ ..++|+++||| +|+|+.|.|+.+ |++|||++|++| ++
T Consensus 3 ~~i~Vk~~~G~~-~~~~v~~~~TV~~lK~~I~~--~~~i~~~~qrL~~~~~G~~L~D~~t-----L~~~gi~~gs~l~l~ 74 (80)
T cd01792 3 WDLKVKMLGGNE-FLVSLRDSMTVSELKQQIAQ--KIGVPAFQQRLAHLDSREVLQDGVP-----LVSQGLGPGSTVLLV 74 (80)
T ss_pred eEEEEEeCCCCE-EEEEcCCCCcHHHHHHHHHH--HhCCCHHHEEEEeccCCCCCCCCCC-----HHHcCCCCCCEEEEE
Confidence 899999998866 88999999999999999998 88999999999 999999999888 999999999999 44
Q ss_pred Ee
Q 032588 87 AV 88 (137)
Q Consensus 87 ~~ 88 (137)
..
T Consensus 75 ~~ 76 (80)
T cd01792 75 VQ 76 (80)
T ss_pred EE
Confidence 43
No 10
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.70 E-value=4.6e-17 Score=107.88 Aligned_cols=68 Identities=25% Similarity=0.228 Sum_probs=62.6
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
++||..+|+. +.+++++++||++||++|++ ..|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.|+
T Consensus 1 ~~vk~~~G~~-~~l~v~~~~TV~~lK~~I~~--~~gi~~~~q~Li~~G~~L~D~~~-----l~~~~i~~~~tv~~~ 68 (70)
T cd01794 1 LKVRLSTGKD-VKLSVSSKDTVGQLKKQLQA--AEGVDPCCQRWFFSGKLLTDKTR-----LQETKIQKDYVVQVI 68 (70)
T ss_pred CeEEcCCCCE-EEEEECCcChHHHHHHHHHH--HhCCCHHHeEEEECCeECCCCCC-----HHHcCCCCCCEEEEE
Confidence 4688888866 89999999999999999998 89999999999999999999988 999999999999443
No 11
>PTZ00044 ubiquitin; Provisional
Probab=99.69 E-value=8.4e-17 Score=106.64 Aligned_cols=70 Identities=14% Similarity=0.324 Sum_probs=65.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
|+|+||+.+|.. +.++++++.||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|++++|++|.+.
T Consensus 1 m~i~vk~~~G~~-~~l~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~L~d~~~-----l~~~~i~~~~~i~l~ 70 (76)
T PTZ00044 1 MQILIKTLTGKK-QSFNFEPDNTVQQVKMALQE--KEGIDVKQIRLIYSGKQMSDDLK-----LSDYKVVPGSTIHMV 70 (76)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEEccCCCc-----HHHcCCCCCCEEEEE
Confidence 789999999976 88999999999999999999 99999999999999999998888 999999999999443
No 12
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.69 E-value=7.1e-17 Score=107.23 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=63.4
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
|+||+..++. +.++++++.||++||++|++ ..|+|+++|+|+|+|+.|.|+.+ |++|||++|++| ++.
T Consensus 1 i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gi~~~~q~L~~~G~~L~D~~t-----L~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRS-SIYEVQLTQTVATLKQQVSQ--RERVQADQFWLSFEGRPMEDEHP-----LGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCE-EEEEECCcChHHHHHHHHHH--HhCCCHHHeEEEECCEECCCCCC-----HHHcCCCCCCEEEEEE
Confidence 6899999976 88999999999999999998 99999999999999999999988 999999999999 544
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.69 E-value=1.6e-16 Score=104.62 Aligned_cols=70 Identities=20% Similarity=0.401 Sum_probs=65.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
|+|+||+.+|+. +.++++++.||++||++|++ ..|+|+++|||+|.|+.|.|+.+ |++|++++|++| ++.
T Consensus 1 m~i~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~g~~~~~qrL~~~g~~L~d~~t-----l~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDDKT-----AADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHhH--hhCCChhhEEEEECCeEccCCCC-----HHHcCCCCCCEEEEEE
Confidence 789999998866 88999999999999999998 89999999999999999998888 999999999999 544
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.68 E-value=8.2e-17 Score=105.66 Aligned_cols=67 Identities=21% Similarity=0.339 Sum_probs=62.7
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
|+||+..|.. +.++++++.||++||++|++ ..|+|+++|||+|+|+.|.|+.+ |++|||++|++| ++
T Consensus 1 i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~q~Li~~G~~L~d~~~-----l~~~~i~~~stl~l~ 68 (70)
T cd01798 1 VYVRTNTGHT-FPVEVDPDTDIKQLKEVVAK--RQGVPPDQLRVIFAGKELRNTTT-----IQECDLGQQSILHAV 68 (70)
T ss_pred CEEEcCCCCE-EEEEECCCChHHHHHHHHHH--HHCCCHHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEE
Confidence 5789998876 88999999999999999999 99999999999999999999988 999999999999 44
No 15
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.68 E-value=1.5e-16 Score=104.85 Aligned_cols=69 Identities=25% Similarity=0.420 Sum_probs=63.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
|+|+||+..+. ..+++++++||++||++|++ ..|+|+++|||+|+|+.|.|+.+ |++|||++|++| +++
T Consensus 1 ~~i~vk~~~g~--~~l~v~~~~TV~~lK~~I~~--~~~i~~~~~~Li~~Gk~L~d~~t-----L~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDK--EEIEIAEDASVKDFKEAVSK--KFKANQEQLVLIFAGKILKDTDT-----LTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCC--EEEEECCCChHHHHHHHHHH--HhCCCHHHEEEEECCeEcCCCCc-----HHHcCCCCCCEEEEEE
Confidence 57999999884 58999999999999999998 88999999999999999999888 999999999999 543
No 16
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.68 E-value=1.8e-16 Score=103.35 Aligned_cols=69 Identities=30% Similarity=0.536 Sum_probs=64.5
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
|+|+||+..+.. +.++++++.||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++||+++|++|.+
T Consensus 1 i~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~L~d~~~-----L~~~~i~~~~~l~l 69 (72)
T cd01809 1 IEIKVKTLDSQT-HTFTVEEEITVLDLKEKIAE--EVGIPVEQQRLIYSGRVLKDDET-----LSEYKVEDGHTIHL 69 (72)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCEECCCcCc-----HHHCCCCCCCEEEE
Confidence 789999998866 88999999999999999998 99999999999999999999888 99999999999943
No 17
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.68 E-value=1.9e-16 Score=104.25 Aligned_cols=70 Identities=21% Similarity=0.343 Sum_probs=65.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
|+|+||+.+|.. +.++++++.||++||++|++ .+++|+++|||+|.|+.|.|+.+ |++|++++|++|.+.
T Consensus 1 m~i~v~~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~g~~~~~q~L~~~g~~L~d~~~-----L~~~~i~~~~~i~l~ 70 (76)
T cd01803 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 70 (76)
T ss_pred CEEEEEcCCCCE-EEEEECCcCcHHHHHHHHHH--HhCCCHHHeEEEECCEECCCCCc-----HHHcCCCCCCEEEEE
Confidence 789999998866 88999999999999999999 99999999999999999999888 999999999999443
No 18
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.67 E-value=1.2e-16 Score=103.82 Aligned_cols=68 Identities=31% Similarity=0.473 Sum_probs=62.3
Q ss_pred EeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032588 15 KTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (137)
Q Consensus 15 Kt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~~p 90 (137)
|+.+|+. +.++|+++.||++||++|++ .+++|+++|+|+|+|+.|.|+.+ |.+|||++|++|++..+|
T Consensus 1 k~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~~~~~~~~L~~~G~~L~d~~t-----L~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKT-FTLEVDPDDTVADLKQKIAE--ETGIPPEQQRLIYNGKELDDDKT-----LSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEE-EEEEEETTSBHHHHHHHHHH--HHTSTGGGEEEEETTEEESTTSB-----TGGGTTSTTEEEEEEESS
T ss_pred CCCCCcE-EEEEECCCCCHHHhhhhccc--ccccccccceeeeeeecccCcCc-----HHHcCCCCCCEEEEEEec
Confidence 5777764 89999999999999999999 99999999999999999998888 999999999999776665
No 19
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.67 E-value=2.1e-16 Score=103.06 Aligned_cols=70 Identities=26% Similarity=0.380 Sum_probs=63.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~ 88 (137)
|+|+||+. +.. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|||++|++|++.+
T Consensus 1 i~i~vk~~-g~~-~~i~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~l~d~~~-----L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GES-HDLSISSQATFGDLKKMLAP--VTGVEPRDQKLIFKGKERDDAET-----LDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEE-EEEEECCCCcHHHHHHHHHH--hhCCChHHeEEeeCCcccCccCc-----HHHcCCCCCCEEEEec
Confidence 68999996 434 78999999999999999999 99999999999999999998877 9999999999996643
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.66 E-value=2e-16 Score=104.70 Aligned_cols=67 Identities=22% Similarity=0.393 Sum_probs=60.7
Q ss_pred EEEEeC-CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEEEE
Q 032588 12 ITVKTI-GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 12 I~VKt~-~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~-~~~d~~~L~~~~I~dg~tLlv 86 (137)
|+||+. ++.. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|.|+ .+ |++|||++|++|++
T Consensus 1 l~v~~~~~g~~-~~l~v~~~~TV~~lK~~I~~--~~gip~~~q~Li~~Gk~L~D~~~~-----L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETT-FSLDVDPDLELENFKALCEA--ESGIPASQQQLIYNGRELVDNKRL-----LALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCE-EEEEECCcCCHHHHHHHHHH--HhCCCHHHeEEEECCeEccCCccc-----HHHcCCCCCCEEEE
Confidence 578999 6654 88999999999999999998 999999999999999999887 46 99999999999965
No 21
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.66 E-value=2.5e-16 Score=105.39 Aligned_cols=70 Identities=24% Similarity=0.233 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe---cCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF---RGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~---~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
|.|+||..+. . +.++|+++.||++||++|++ .+++||++|||+| +|+.++|+.+ |++|+|++|++|++
T Consensus 1 ~~i~vk~~g~-~-~~v~v~~~~Tv~~lK~~i~~--~tgvp~~~QKLi~~~~~Gk~l~D~~~-----L~~~~i~~g~~i~l 71 (74)
T cd01813 1 VPVIVKWGGQ-E-YSVTTLSEDTVLDLKQFIKT--LTGVLPERQKLLGLKVKGKPAEDDVK-----ISALKLKPNTKIMM 71 (74)
T ss_pred CEEEEEECCE-E-EEEEECCCCCHHHHHHHHHH--HHCCCHHHEEEEeecccCCcCCCCcC-----HHHcCCCCCCEEEE
Confidence 5789998544 3 78999999999999999999 9999999999996 9999999888 99999999999976
Q ss_pred Ee
Q 032588 87 AV 88 (137)
Q Consensus 87 ~~ 88 (137)
++
T Consensus 72 mG 73 (74)
T cd01813 72 MG 73 (74)
T ss_pred Ee
Confidence 54
No 22
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=3.7e-15 Score=126.39 Aligned_cols=74 Identities=23% Similarity=0.449 Sum_probs=67.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC---CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH---LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~---ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
|+|+||+..++. +.|+|+++.||.+||++|+. ..| +|+++|||||+||+|+|+.+ |++|+|++|++| +
T Consensus 1 MkItVKtl~g~~-~~IeV~~~~TV~dLK~kI~~--~~g~~~ip~~~QkLIy~GkiL~Dd~t-----L~dy~I~e~~~Ivv 72 (378)
T TIGR00601 1 MTLTFKTLQQQK-FKIDMEPDETVKELKEKIEA--EQGKDAYPVAQQKLIYSGKILSDDKT-----VREYKIKEKDFVVV 72 (378)
T ss_pred CEEEEEeCCCCE-EEEEeCCcChHHHHHHHHHH--hhCCCCCChhHeEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 789999999976 89999999999999999998 887 99999999999999999988 999999999999 5
Q ss_pred EEecCC
Q 032588 86 AAVKPK 91 (137)
Q Consensus 86 v~~~p~ 91 (137)
++.+++
T Consensus 73 mv~k~k 78 (378)
T TIGR00601 73 MVSKPK 78 (378)
T ss_pred EeccCC
Confidence 555554
No 23
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.56 E-value=1.2e-14 Score=91.91 Aligned_cols=64 Identities=33% Similarity=0.581 Sum_probs=59.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~ 82 (137)
|+|+||+.+ .. +.++|+++.||++||++|+. .+++|+++|||+|.|+.|.|+.+ |++||+++|+
T Consensus 1 ~~i~vk~~~-~~-~~~~v~~~~tv~~lk~~i~~--~~~~~~~~~~L~~~g~~L~d~~t-----L~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GT-ITLEVKPSDTVSELKEKIAE--LTGIPVEQQRLIYKGKVLEDDRT-----LADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ce-EEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCEECCCCCC-----HHHcCCcCCC
Confidence 689999988 44 88999999999999999999 99999999999999999998877 9999999985
No 24
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.54 E-value=1.7e-14 Score=96.39 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=56.3
Q ss_pred CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032588 21 PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (137)
Q Consensus 21 ~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~~ 89 (137)
..+.++|++++||++||++|+. .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.|...
T Consensus 8 ~~~~l~v~~~~TV~~lK~~i~~--~~gip~~~q~L~~~G~~L~d~~t-----L~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 8 QMLNFTLQLSDPVSVLKVKIHE--ETGMPAGKQKLQYEGIFIKDSNS-----LAYYNLANGTIIHLQLK 69 (76)
T ss_pred eEEEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCEEcCCCCc-----HHHcCCCCCCEEEEEEe
Confidence 3378999999999999999998 99999999999999999999888 99999999999954443
No 25
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.52 E-value=1e-13 Score=95.10 Aligned_cols=76 Identities=22% Similarity=0.412 Sum_probs=70.0
Q ss_pred CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032588 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (137)
Q Consensus 4 ~~~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~t 83 (137)
.+.+..|+|+|++..+.. +.+.|.+++|+..||+++++ ..|+|+++|||+|.|+.|.++.| +.+|++.+||+
T Consensus 6 ~~~~~~i~I~v~~~~g~~-~~~~v~~~~~l~~l~~~y~~--~~gi~~~~~rf~f~G~~L~~~~T-----~~~l~m~d~d~ 77 (87)
T cd01763 6 GEISEHINLKVKGQDGNE-VFFKIKRSTPLKKLMEAYCQ--RQGLSMNSVRFLFDGQRIRDNQT-----PDDLGMEDGDE 77 (87)
T ss_pred CCCCCeEEEEEECCCCCE-EEEEEcCCCHHHHHHHHHHH--HhCCCccceEEEECCeECCCCCC-----HHHcCCCCCCE
Confidence 456788999999998866 88999999999999999999 99999999999999999999988 99999999999
Q ss_pred E-EEE
Q 032588 84 V-IAA 87 (137)
Q Consensus 84 L-lv~ 87 (137)
| ++.
T Consensus 78 I~v~l 82 (87)
T cd01763 78 IEVML 82 (87)
T ss_pred EEEEE
Confidence 9 554
No 26
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.52 E-value=2.2e-14 Score=123.97 Aligned_cols=72 Identities=26% Similarity=0.393 Sum_probs=66.7
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
.+.|+|||.+.+ ..|.|+.++||.+||+.|+. .+++++++|+|||.||+|+|+++ |..|||+||+|| +|+
T Consensus 15 ~irV~Vkt~~dk--~~~~V~~~ssV~qlKE~I~~--~f~a~~dqlvLIfaGrILKD~dT-----L~~~gI~Dg~TvHLVi 85 (493)
T KOG0010|consen 15 LIRVTVKTPKDK--YEVNVASDSSVLQLKELIAQ--RFGAPPDQLVLIYAGRILKDDDT-----LKQYGIQDGHTVHLVI 85 (493)
T ss_pred eeEEEEecCCcc--eeEecccchHHHHHHHHHHH--hcCCChhHeeeeecCccccChhh-----HHHcCCCCCcEEEEEe
Confidence 489999999884 68999999999999999999 99999999999999999999999 999999999999 665
Q ss_pred ec
Q 032588 88 VK 89 (137)
Q Consensus 88 ~~ 89 (137)
..
T Consensus 86 k~ 87 (493)
T KOG0010|consen 86 KS 87 (493)
T ss_pred cc
Confidence 44
No 27
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.48 E-value=5.9e-14 Score=94.63 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=46.1
Q ss_pred CCCcHHHHHHHHHhccCC--CC-CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 29 SPIKVRDLRKLIATSSAN--HL-PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 29 ~~~TV~dLK~~Ia~~~~~--~i-p~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
.+.||++||++|++ +. ++ ++++|||||+||+|+|+.+ |++|||++|++|+++
T Consensus 19 ~~~TV~~LK~kI~~--~~~egi~~~dqQrLIy~GKiL~D~~T-----L~dygI~~gstlhLv 73 (75)
T cd01815 19 GGYQVSTLKQLIAA--QLPDSLPDPELIDLIHCGRKLKDDQT-----LDFYGIQSGSTIHIL 73 (75)
T ss_pred ccCcHHHHHHHHHH--hhccCCCChHHeEEEeCCcCCCCCCc-----HHHcCCCCCCEEEEE
Confidence 35899999999998 75 46 5999999999999999988 999999999999443
No 28
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.4e-14 Score=92.01 Aligned_cols=67 Identities=21% Similarity=0.396 Sum_probs=63.4
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
|.|++|+..++. +.+++++..+|..+|+.|++ +.|+||.+|||||.||++.|+.+ -.+|++.-|+.|
T Consensus 1 m~iKvktLt~Ke-IeidIep~DkverIKErvEE--keGIPp~qqrli~~gkqm~DD~t-----A~~Y~~~~GSVl 67 (70)
T KOG0005|consen 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYAGKQMNDDKT-----AAHYNLLGGSVL 67 (70)
T ss_pred CeeeEeeeccce-EEEeeCcchHHHHHHHHhhh--hcCCCchhhhhhhcccccccccc-----HHHhhhccceeE
Confidence 578999999987 99999999999999999999 99999999999999999999988 999999888887
No 29
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.42 E-value=6.4e-13 Score=89.24 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=56.5
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC-CCCCCCCCCccccCCC-CCCEEEE
Q 032588 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD-DTQDDDDRDDVYLQLS-NGDSVIA 86 (137)
Q Consensus 11 ~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~-D~~~~d~~~L~~~~I~-dg~tLlv 86 (137)
.|.=|...++. +.++|++++||++||++|++ .+|+||++||| |.|+.|. |+.+ |++||++ +|++|++
T Consensus 4 ~~~~~~~~~~t-~~l~v~~~~TV~~lK~kI~~--~~gip~~~QrL-~~G~~L~dD~~t-----L~~ygi~~~g~~~~l 72 (75)
T cd01799 4 SVEDAQSHTVT-IWLTVRPDMTVAQLKDKVFL--DYGFPPAVQRW-VIGQRLARDQET-----LYSHGIRTNGDSAFL 72 (75)
T ss_pred EEeccccCCCe-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEE-EcCCeeCCCcCC-----HHHcCCCCCCCEEEE
Confidence 34445555544 88999999999999999999 99999999999 9999985 5566 9999999 8899944
No 30
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.41 E-value=6.1e-13 Score=95.76 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=63.5
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc---CCCCC--CCceEEEecCeecCCCCCCCCCCccccC----
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS---ANHLP--IENLRLVFRGKVLDDTQDDDDRDDVYLQ---- 77 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~---~~~ip--~e~qRLi~~Gk~L~D~~~~d~~~L~~~~---- 77 (137)
.+.++|++|-..|.---...++++.||++||++|++.- +.++| +++|||||+||+|+|+.+ |++|+
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~T-----L~d~~~p~g 76 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKT-----VGECRSPVG 76 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCc-----HHHhCCccc
Confidence 36799999998886634578899999999999998500 33444 999999999999999998 99999
Q ss_pred --CCCCCEEEEEecCC
Q 032588 78 --LSNGDSVIAAVKPK 91 (137)
Q Consensus 78 --I~dg~tLlv~~~p~ 91 (137)
+..+.|+.|...|.
T Consensus 77 ~~~~~~~TmHvvlr~~ 92 (113)
T cd01814 77 DIAGGVITMHVVVQPP 92 (113)
T ss_pred ccCCCceEEEEEecCC
Confidence 66667885555544
No 31
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.38 E-value=1.7e-12 Score=82.92 Aligned_cols=67 Identities=28% Similarity=0.413 Sum_probs=59.2
Q ss_pred EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032588 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (137)
Q Consensus 14 VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~ 88 (137)
||..++.. +.+.+++++||++||++|+. .+++|+++|+|+|.|+.|.|+.+ |.+|++.+|+.|+++.
T Consensus 2 v~~~~~~~-~~~~~~~~~ti~~lK~~i~~--~~~~~~~~~~l~~~g~~l~d~~~-----l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKT-FELEVSPDDTVAELKAKIAA--KEGVPPEQQRLIYAGKILKDDKT-----LSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCcCCCCcCC-----HHHCCCCCCCEEEEEE
Confidence 56665544 78999999999999999999 89999999999999999988877 9999999999996653
No 32
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.38 E-value=8.7e-13 Score=109.50 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=68.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC--CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~--ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
|+|+||+..+.+ +.+++.|+.||.++|++|+. ..| +|+++|+|||.||+|+|+.+ +.+|+|++++.| ++
T Consensus 1 m~lt~KtL~q~~-F~iev~Pe~tV~evK~kIet--~~g~dyP~~~QkLIy~GkiL~D~~t-----v~Eykv~E~~fiVvM 72 (340)
T KOG0011|consen 1 MKLTVKTLKQQT-FTIEVKPEDTVVEVKKKIET--EKGPDYPAEQQKLIYSGKILKDETT-----VGEYKVKEKKFIVVM 72 (340)
T ss_pred CeeEeeeccCce-eEeecCcchhHHHHHHHHHh--ccCCCCchhhheeeecceeccCCcc-----hhhhccccCceEEEE
Confidence 789999999977 99999999999999999998 777 99999999999999999988 999999999999 66
Q ss_pred EecCC
Q 032588 87 AVKPK 91 (137)
Q Consensus 87 ~~~p~ 91 (137)
+.++|
T Consensus 73 lsK~k 77 (340)
T KOG0011|consen 73 LSKDK 77 (340)
T ss_pred EecCc
Confidence 66765
No 33
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=8.7e-13 Score=99.38 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=66.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~~ 88 (137)
|+|+|++..+.. +.+++.++.||..+|++|+. +.+||+++|||||.|+.|+|..+ |++|+|+..++| +++.
T Consensus 1 m~ifVk~l~~kt-i~~eve~~~ti~~~Kakiq~--~egIp~dqqrlifag~qLedgrt-----lSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 1 MQIFVKTLTGKT-ITLEVEANDTIDNVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (156)
T ss_pred Cccchhhccccc-eeeeecccccHHHHHHhhhc--ccCCCchhhhhhhhhcccccCCc-----cccccccccceEEEEEE
Confidence 689999998866 88999999999999999998 99999999999999999999988 999999999999 6654
No 34
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=3.5e-13 Score=96.48 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=64.8
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
|++++++..|+. +.+++.|+.||..||.+|.. +.|+|+++|+|+|.|++|+|..+ +++|||+..+|| +|.
T Consensus 1 ~~~~~~~~~GKT-~~le~EpS~ti~~vKA~i~~--~~Gi~~~~~~L~~~~k~LED~~T-----la~Y~i~~~~Tl~~~~ 71 (128)
T KOG0003|consen 1 MQIFVKTLTGKT-ITLEVEPSDTIDNVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LADYNIQKESTLHLVL 71 (128)
T ss_pred CcEEEEEeeCce-EEEEecccchHHHHHHHhcc--ccCCCHHHHHHHhcccccccCCc-----ccccCccchhhhhhhH
Confidence 578889988876 88999999999999999988 99999999999999999999888 999999999999 653
No 35
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.22 E-value=9.3e-11 Score=80.05 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=58.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-ecCe-----ec-CCCCCCCCCCccccCCCCCC
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-FRGK-----VL-DDTQDDDDRDDVYLQLSNGD 82 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi-~~Gk-----~L-~D~~~~d~~~L~~~~I~dg~ 82 (137)
+.|.|++..........+++++||.+||++++. .+|+||+.|||. |.|+ .| +|+. +|.+||+++|.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~--~~G~~~~~mrL~l~~~~~~~~~~l~~d~~-----~L~~y~~~dg~ 74 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLEL--VVGTPASSMRLQLFDGDDKLVSKLDDDDA-----LLGSYPVDDGC 74 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHH--HHCCCccceEEEEEcCCCCeEeecCCCcc-----EeeeccCCCCC
Confidence 678888866544344569999999999999999 999999999995 8888 34 3444 49999999999
Q ss_pred EE-EEEecC
Q 032588 83 SV-IAAVKP 90 (137)
Q Consensus 83 tL-lv~~~p 90 (137)
+| ++-..|
T Consensus 75 ~IhVvD~~p 83 (84)
T cd01789 75 RIHVIDVSG 83 (84)
T ss_pred EEEEEeCCC
Confidence 99 444433
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.17 E-value=5.2e-11 Score=77.94 Aligned_cols=69 Identities=25% Similarity=0.445 Sum_probs=62.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~-e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
|+|+|++.+++. +.+.|.++.++..|.+.+++ ..++|+ +.++|+|.|+.|..+.| ++++|+.+||+| ++
T Consensus 1 I~i~v~~~~~~~-~~~~v~~~~~~~~l~~~~~~--~~~i~~~~~~~l~fdG~~L~~~~T-----~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKE-IKFKVKPTTTVSKLIEKYCE--KKGIPPEESIRLIFDGKRLDPNDT-----PEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEE-EEEEEETTSCCHHHHHHHHH--HHTTTT-TTEEEEETTEEE-TTSC-----HHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--hhCCCccceEEEEECCEEcCCCCC-----HHHCCCCCCCEEEEE
Confidence 789999998874 88999999999999999999 999999 99999999999998888 999999999999 43
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.13 E-value=1.5e-10 Score=82.02 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=54.5
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe-cCC
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV-KPK 91 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~-~p~ 91 (137)
..++|++++||++||.+|.+ .++++|+.|+|+|.|+.|.|+ +.+|++|||..|+.|+++. .|.
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ--~f~V~P~dQkL~~dG~~L~DD----srTLssyGv~sgSvl~LlideP~ 80 (107)
T cd01795 17 KALLVSANQTLKELKIQIMH--AFSVAPFDQNLSIDGKILSDD----CATLGTLGVIPESVILLKADEPI 80 (107)
T ss_pred ceEEeCccccHHHHHHHHHH--HhcCCcccceeeecCceeccC----CccHHhcCCCCCCEEEEEecCCc
Confidence 46899999999999999999 999999999999999988654 3579999999999995544 443
No 38
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=99.11 E-value=1.9e-10 Score=76.97 Aligned_cols=70 Identities=30% Similarity=0.383 Sum_probs=54.8
Q ss_pred eEEEEEeCCCCCcEE-EEe-cCCCcHHHHHHHHHhccCCC-CCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 10 VEITVKTIGPAPPSR-LSV-SSPIKVRDLRKLIATSSANH-LPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 10 m~I~VKt~~~~~~~~-l~v-~~~~TV~dLK~~Ia~~~~~~-ip~e~qRL--i~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
++|.++..+.+. +. +++ ++++||.+||+.|++ ..+ ++++|||| ++.|+.|.|+.+ |.++|+++|++|
T Consensus 1 ~~i~~~~~~~k~-~~~~~~~~~~aTV~dlk~~i~~--~~~~~~~~Rqrl~~~~~g~~L~d~~t-----L~~~gv~~g~~l 72 (77)
T cd01801 1 LEILDAKRSDKP-IGKLKVSSGDATIADLKKLIAK--SSPQLTVNRQSLRLEPKGKSLKDDDT-----LVDLGVGAGATL 72 (77)
T ss_pred CeeeccccCcCc-eeecccCCCCccHHHHHHHHHH--HcCCCCcceeEEEeCCCCcccCCccc-----HhhcCCCCCCEE
Confidence 356666655122 32 344 478999999999998 654 68999999 589999998888 999999999999
Q ss_pred EEE
Q 032588 85 IAA 87 (137)
Q Consensus 85 lv~ 87 (137)
+|+
T Consensus 73 yvK 75 (77)
T cd01801 73 YVR 75 (77)
T ss_pred EEe
Confidence 886
No 39
>PLN02560 enoyl-CoA reductase
Probab=99.08 E-value=3.5e-10 Score=93.80 Aligned_cols=72 Identities=26% Similarity=0.301 Sum_probs=61.0
Q ss_pred eEEEEEeCCCCCcE---EEEecCCCcHHHHHHHHHhccCCCC-CCCceEEEec---C----eecCCCCCCCCCCccccCC
Q 032588 10 VEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSANHL-PIENLRLVFR---G----KVLDDTQDDDDRDDVYLQL 78 (137)
Q Consensus 10 m~I~VKt~~~~~~~---~l~v~~~~TV~dLK~~Ia~~~~~~i-p~e~qRLi~~---G----k~L~D~~~~d~~~L~~~~I 78 (137)
|+|+|+..+|+. + .|++++++||++||++|++ +.+. +++||||++. | +.|.|+++ |+++|+
T Consensus 1 M~I~Vk~~~Gk~-i~~~~lev~~~aTV~dLK~~Isk--~~~~~~~~RqRL~~~~~~gk~~g~~L~d~kt-----L~d~gv 72 (308)
T PLN02560 1 MKVTVVSRSGRE-IIKGGLEVPDSATVADLKKAIHK--RKKKYYPSRQRLTLPLPPGKTRPTVLDDSKS-----LKDYGL 72 (308)
T ss_pred CEEEEEcCCCCe-ecceeEEcCCCCcHHHHHHHHHH--HcCCCChhheEEEEecCCCCcCccccCCCCC-----HHhcCC
Confidence 678999877755 4 6899999999999999998 7775 8999999983 3 37777777 999999
Q ss_pred CCCCEEEEEec
Q 032588 79 SNGDSVIAAVK 89 (137)
Q Consensus 79 ~dg~tLlv~~~ 89 (137)
++|++|+++-.
T Consensus 73 ~~gstLy~kDL 83 (308)
T PLN02560 73 GDGGTVVFKDL 83 (308)
T ss_pred CCCceEEEEeC
Confidence 99999998764
No 40
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.95 E-value=3.4e-09 Score=72.26 Aligned_cols=77 Identities=16% Similarity=0.290 Sum_probs=57.6
Q ss_pred ceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec----CeecCCCCCCCCCCccccCCCCCCE
Q 032588 9 SVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----GKVLDDTQDDDDRDDVYLQLSNGDS 83 (137)
Q Consensus 9 ~m~I~VKt~~~~-~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~----Gk~L~D~~~~d~~~L~~~~I~dg~t 83 (137)
+|.|+|.+...+ ......++.++||++||++|+. .+|+|++.|||.+. |..... ..+|+.+|.+||+++|.+
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~--~~Gi~~~~m~L~l~~~~~~~~~~~-~~dd~~~L~~y~~~dg~~ 77 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEK--LTGIPPSDMRLQLKSDKDDSKIEE-LDDDDATLGSYGIKDGMR 77 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHH--HHTS-TTTEEEEEE-TSSSSEEEE-SSGSSSBCCHHT-STTEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHH--HhCCCcccEEEEEEecCCCccccc-cCCCccEeecCCCCCCCE
Confidence 478888887664 3367899999999999999999 99999999999887 222211 123446699999999999
Q ss_pred EEEEe
Q 032588 84 VIAAV 88 (137)
Q Consensus 84 Llv~~ 88 (137)
|.|.-
T Consensus 78 i~V~D 82 (87)
T PF14560_consen 78 IHVVD 82 (87)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 96643
No 41
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.4e-09 Score=98.29 Aligned_cols=79 Identities=23% Similarity=0.530 Sum_probs=67.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~~ 89 (137)
..|+|||+.... .++.|...+||.+||.+|.. +.+|+.+.|||||+|++|.|+++ +.+|+| +|.+|.++-.
T Consensus 3 ~~v~vktld~r~-~t~~ig~q~ti~~~~d~~r~--~~ni~s~~qr~i~~grvl~~~k~-----vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 3 PNVLVKTLDSRT-RTFIIGAQMTIKEFKDHIRA--SVNIPSEKQRLIYQGRVLQDDKK-----VQEYNV-DGKVIHLVER 73 (1143)
T ss_pred cceeeeecccce-eEEEechHHHHHHHHHHHHH--hcccccccceeeecceeeccchh-----hhhccC-CCeEEEeecc
Confidence 458999998865 88999999999999999999 99999999999999999999988 999999 9988844444
Q ss_pred CCCCCcccc
Q 032588 90 PKPPPRHLR 98 (137)
Q Consensus 90 p~~~~~~~~ 98 (137)
| ||+-|+.
T Consensus 74 p-pp~~~~~ 81 (1143)
T KOG4248|consen 74 P-PPQTHLP 81 (1143)
T ss_pred C-CCCcccc
Confidence 3 3334444
No 42
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.85 E-value=3.8e-08 Score=70.80 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=53.3
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCC--C-----CCCCceEEEecCeecCCCCCCCCCCccccCCCC
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSAN--H-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN 80 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~--~-----ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~d 80 (137)
+.|+|+++-..|.....+.+++++||.+||+.|.. .. + ..++.+||||.||.|+|+.+ |.++++..
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~--~WP~d~~~~p~s~~~lRLI~~GriL~d~~t-----L~~~~~~~ 73 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWA--EWPEDWEERPKSPSDLRLIYAGRILEDNKT-----LSDCRLPS 73 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHH--SSSTTSSSTT-SGGGEEEEETTEEE-SSSB-----TGGGT--T
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHH--HCccccccCCCChhhEEEEeCCeecCCcCc-----HHHhCCCC
Confidence 35889999988874367899999999999999985 33 1 34677999999999999998 99999999
Q ss_pred CCE
Q 032588 81 GDS 83 (137)
Q Consensus 81 g~t 83 (137)
|++
T Consensus 74 ~~~ 76 (111)
T PF13881_consen 74 GET 76 (111)
T ss_dssp TSE
T ss_pred CCC
Confidence 885
No 43
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.75 E-value=1.8e-08 Score=68.48 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=43.9
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCC-CCCCCCccccCCCCCCEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ-DDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~-~~d~~~L~~~~I~dg~tLlv 86 (137)
+.|-|.|++..|- ..|++++++|+.+|+++|++ ..++|++.|.|. ..+...... ..++.+|+++||+.||.|++
T Consensus 3 ~~milRvrS~dG~--~Rie~~~~~t~~~L~~kI~~--~l~~~~~~~~L~-~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 3 SSMILRVRSKDGM--KRIEVSPSSTLSDLKEKISE--QLSIPDSSQSLS-KDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ---EEEEE-SSEE--EEEEE-TTSBHHHHHHHHHH--HS---TTT---B-SSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred ccEEEEEECCCCC--EEEEcCCcccHHHHHHHHHH--HcCCCCcceEEE-ecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 6799999998885 58999999999999999999 999999999884 333322211 23456799999999999976
Q ss_pred E
Q 032588 87 A 87 (137)
Q Consensus 87 ~ 87 (137)
.
T Consensus 78 ~ 78 (80)
T PF11543_consen 78 K 78 (80)
T ss_dssp -
T ss_pred e
Confidence 4
No 44
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.72 E-value=1.6e-07 Score=59.07 Aligned_cols=68 Identities=25% Similarity=0.417 Sum_probs=60.3
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
+++++..++. +.+.+.+..+|..+|.+|+. ..++++..|++.++|+.|.|+.+ +.+|+|..+.++ ++.
T Consensus 2 ~~~~~~~gk~-~~~~~~~~~~i~~~k~~i~~--~~~~~~~~q~~~~~~~~l~d~~~-----l~~~~i~~~~~~~l~~ 70 (75)
T KOG0001|consen 2 IFVKTLDGKT-ITLEVSPSDTIEVVKAKIRD--KEGIPVDQQRLIFGGKPLEDGRT-----LADYNIQEGSTLHLVL 70 (75)
T ss_pred EEEEecCCCE-EEEEecCCCHHHHHHHHHHh--hcCCCCeeEEEEECCEECcCCCc-----HHHhCCCCCCEEEEEE
Confidence 4667766655 88999999999999999998 88999999999999999999887 999999999999 444
No 45
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.2e-07 Score=82.23 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=63.4
Q ss_pred ceEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 9 SVEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~-v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
+..|.||+.+..+ .++ ++.+.|+..||+++.. .+|++|+|||++++|+.++|+-. ...++|++|.+|+|.
T Consensus 3 ~~~v~VKW~gk~y--~v~~l~~d~t~~vlKaqlf~--LTgV~PeRQKv~vKGg~a~dd~~-----~~al~iKpn~~lmMm 73 (473)
T KOG1872|consen 3 SDTVIVKWGGKKY--PVETLSTDETPSVLKAQLFA--LTGVPPERQKVMVKGGLAKDDVD-----WGALQIKPNETLMMM 73 (473)
T ss_pred cceEeeeecCccc--cceeccCCCchHHHHHHHHH--hcCCCccceeEEEeccccccccc-----ccccccCCCCEEEee
Confidence 3678999976654 554 9999999999999999 99999999999999999998765 899999999999887
Q ss_pred ec
Q 032588 88 VK 89 (137)
Q Consensus 88 ~~ 89 (137)
+.
T Consensus 74 Gt 75 (473)
T KOG1872|consen 74 GT 75 (473)
T ss_pred cc
Confidence 64
No 46
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.59 E-value=1.1e-07 Score=68.74 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=55.8
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-------CCCCEE
Q 032588 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-------SNGDSV 84 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I-------~dg~tL 84 (137)
+++.-.-.+.++-++..++.||.+||++|+. -...||+.|||+..+.+|+|+++ |++||+ ++-.+|
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~ieg--I~k~pp~dQrL~kd~qvLeD~kT-----L~d~g~t~~~akaq~pA~v 75 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEG--ILKRPPEDQRLYKDDQLLDDGKT-----LGDCGFTSQTARPQAPATV 75 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHH--HhcCChhHheeecCceeeccccc-----HHHcCccccccccCCCCeE
Confidence 4444444555567899999999999999998 89999999999966788888888 999999 445666
Q ss_pred -EEEe
Q 032588 85 -IAAV 88 (137)
Q Consensus 85 -lv~~ 88 (137)
+...
T Consensus 76 gLa~r 80 (119)
T cd01788 76 GLAFR 80 (119)
T ss_pred EEEEe
Confidence 5544
No 47
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.47 E-value=8.7e-07 Score=52.49 Aligned_cols=58 Identities=33% Similarity=0.429 Sum_probs=52.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
..+.+++..|+++|++.|.+ ..++++++|+|.+.|..+.+... +.++++.+|+.|.+.
T Consensus 10 ~~~~~~~~~tv~~l~~~i~~--~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~i~~~ 67 (69)
T cd00196 10 VELLVPSGTTVADLKEKLAK--KLGLPPEQQRLLVNGKILPDSLT-----LEDYGLQDGDELVLV 67 (69)
T ss_pred EEEEcCCCCcHHHHHHHHHH--HHCcChHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEE
Confidence 67888899999999999998 88999999999999999988776 678999999999554
No 48
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.7e-06 Score=69.96 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=56.1
Q ss_pred CCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEecC
Q 032588 19 PAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAVKP 90 (137)
Q Consensus 19 ~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~~~p 90 (137)
.++.+.|.|+.+.+|.+||+.++. ..|+|++++|+||.||.|.++.+ +..+.+...+.+ +|.-.|
T Consensus 12 ~~h~l~v~v~~~t~I~~lke~Vak--~~gvp~D~L~viFaGKeLs~~tt-----v~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 12 SSHGLPVEVDSDTSIFQLKEVVAK--RQGVPADQLRVIFAGKELSNDTT-----VQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred ccCceeEEEecCCCHHHHHHHHHH--hhCCChhheEEEEeccccccCce-----eecccccccchhhhhccCc
Confidence 334467899999999999999999 99999999999999999998888 998888888877 665555
No 49
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.91 E-value=4e-05 Score=53.93 Aligned_cols=56 Identities=25% Similarity=0.435 Sum_probs=41.0
Q ss_pred EEEEeCCCCCcEEEEec--CCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCC
Q 032588 12 ITVKTIGPAPPSRLSVS--SPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQD 67 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~--~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~ 67 (137)
|+|+...+-....++++ ...||.+||++|.+.......-.++||||.|+.|.|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~ 60 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTD 60 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccch
Confidence 55565554343567777 679999999999982223455667999999999988765
No 50
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=2.6e-05 Score=59.77 Aligned_cols=81 Identities=46% Similarity=0.735 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecCCCCCccccccCccCCccccccc
Q 032588 33 VRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKF 112 (137)
Q Consensus 33 V~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~~p~~~~~~~~~~~~~~~~~~~~~~ 112 (137)
.+++++.+++ +. |++..|...+|+.+.+... ++.....+++..++.+.+-|+|++.- =.+++++++.+
T Consensus 8 lR~~Rk~k~~--k~--~v~~~k~~lr~~~~qttg~---~~d~~itlK~~p~f~~a~~~npr~es-----~~~~~~e~v~e 75 (181)
T KOG3249|consen 8 LRDLRKAKAE--KG--PVSTLKMKLRGKALQTTGD---GDDLYITLKDQPSFIVAVIPNPRAES-----FDDDDDEDVPE 75 (181)
T ss_pred HHHHHHHhhc--cC--chhhcchHHHHHHhcCCCC---CccceeeeecCCcceeeecCCCchhh-----ccCCccccCch
Confidence 5677777765 43 9999999999999987665 33444567777778777778777621 22334557999
Q ss_pred ccCCcchHHHHHH
Q 032588 113 KLPQSTSRWKRKL 125 (137)
Q Consensus 113 ~lp~~~~~~~~~~ 125 (137)
+.|+++++|.|++
T Consensus 76 ~qP~~St~~t~k~ 88 (181)
T KOG3249|consen 76 KQPPSSTRWTRKL 88 (181)
T ss_pred hcCCccccccccc
Confidence 9999999999965
No 51
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.54 E-value=0.00079 Score=45.56 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=52.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec---Ce--ecCCCCCCCCCCccccCCCCCCEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR---GK--VLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~---Gk--~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
|+|+|+-.+... .++.|+|..+|..+|++|.. ..+++- .|||-|. |+ .|.+..+ |++|||=..-.|
T Consensus 1 iqVtV~q~g~~d-l~l~vnPy~pI~k~K~kI~~--~~~~~g-~qrLsfQepgg~rqlL~s~~s-----LA~yGiFs~~~i 71 (80)
T cd01811 1 IQVTVEQTGYSD-WILRVNPYSPIRKIKEKIRR--SRNCSG-LQRLSFQEPGGERQLLSSRKS-----LADYGIFSKTNI 71 (80)
T ss_pred CEEEeeecCCCc-eEEEeCCcchHHHHHHHHHH--hhCccc-ceEEEeecCCccccccccccc-----HhhhcceeccEE
Confidence 578999887766 89999999999999999998 666665 9999986 22 2344444 999999666555
No 52
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0012 Score=46.61 Aligned_cols=72 Identities=18% Similarity=0.376 Sum_probs=59.4
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
-|+|+|+.-.+ ....+.|..++...-|....++ ..|++.+..|++|.|+.+...+| -.+++..+||.| ++.
T Consensus 20 hi~LKV~gqd~-~~~~Fkikr~t~LkKLM~aYc~--r~Gl~~~s~RFlFdG~rI~~~~T-----P~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 20 HINLKVKGQDG-SVVVFKIKRHTPLKKLMKAYCE--RQGLSMNSLRFLFDGQRIRETHT-----PADLEMEDGDEIEVVQ 91 (99)
T ss_pred eEEEEEecCCC-CEEEEEeecCChHHHHHHHHHH--HcCCccceEEEEECCcCcCCCCC-----hhhhCCcCCcEEEEEe
Confidence 35555555333 2245788899999999999998 99999999999999999999999 899999999999 654
Q ss_pred e
Q 032588 88 V 88 (137)
Q Consensus 88 ~ 88 (137)
.
T Consensus 92 ~ 92 (99)
T KOG1769|consen 92 E 92 (99)
T ss_pred e
Confidence 3
No 53
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.42 E-value=0.00015 Score=51.35 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=48.4
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC--eecCCCCCCCCCCccccCCCCC
Q 032588 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG--KVLDDTQDDDDRDDVYLQLSNG 81 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G--k~L~D~~~~d~~~L~~~~I~dg 81 (137)
++++..-.+.++-++..++.||-+||.+++. -..-|++.|||..-. ..|.|.++ |+++|....
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~g--i~~~Pvn~qrL~kmd~eqlL~D~kt-----L~d~gfts~ 67 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEG--ILKRPVNEQRLYKMDTEQLLDDGKT-----LGDCGFTSQ 67 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHH--HHhCCCcchheeecCHHHHhhccch-----hhhcccccc
Confidence 3333333445467899999999999999998 888999999998633 56777777 999988643
No 54
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=5.7e-05 Score=49.83 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=56.8
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
+++.+...-|++ ..+-.+++.||+++|..||. .+|-.++...|---+.+++|.-+ |++|.|.+|--+
T Consensus 2 iev~~nDrLGKK-VRvKCn~dDtiGD~KKliaa--QtGT~~~kivl~k~~~i~kd~I~-----L~dyeihdg~~l 68 (73)
T KOG3493|consen 2 IEVVLNDRLGKK-VRVKCNTDDTIGDLKKLIAA--QTGTRPEKIVLKKWYTIFKDHIT-----LSDYEIHDGMNL 68 (73)
T ss_pred ceehhhhhcCce-EEEEeCCcccccCHHHHHHH--hhCCChhHhHHHhhhhhhhcccc-----eeeEEeccCccE
Confidence 566666666766 77888999999999999998 99999999887766777888888 999999999776
No 55
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.34 E-value=0.002 Score=42.81 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=60.9
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEE--ecCeecCCCCCCCCCCccccCCCCC
Q 032588 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLV--FRGKVLDDTQDDDDRDDVYLQLSNG 81 (137)
Q Consensus 5 ~~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~-qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg 81 (137)
++...+.|.||.++|+. +.-.+.++.||.+|..-|.. ....+... ..|+ |-.+.+.++. +.+|.++|+..+
T Consensus 2 ~~~~~~~I~vRlpdG~~-l~~~F~~~~tl~~l~~~v~~--~~~~~~~~~f~L~~~~Pr~~l~~~~---~~tl~e~~l~p~ 75 (82)
T PF00789_consen 2 EESDVVRIQVRLPDGSR-LQRRFPKSDTLQDLYDFVES--QLFSPEESDFELITAFPRRELTDED---SKTLEEAGLLPS 75 (82)
T ss_dssp STSSEEEEEEEETTSTE-EEEEEETTSBHHHHHHHHHH--HHHCTTTSSEEEEESSSTEECCSTT---TSBTCCCTTSSC
T ss_pred CCCCEEEEEEECCCCCE-EEEEECCcchHHHHHHHHHH--hcCCCCCccEEEEeCCCCcCCCccc---cccHHHhcCCCC
Confidence 56678999999999976 77899999999999999987 55555554 7776 5677786544 356999999999
Q ss_pred CEEEE
Q 032588 82 DSVIA 86 (137)
Q Consensus 82 ~tLlv 86 (137)
.+|+|
T Consensus 76 ~~l~v 80 (82)
T PF00789_consen 76 ATLIV 80 (82)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 98865
No 56
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.19 E-value=0.001 Score=44.41 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=47.7
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC---C---ceEEE-ecCeecCCCCCCCCCCccccCCCCCC
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---E---NLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~---e---~qRLi-~~Gk~L~D~~~~d~~~L~~~~I~dg~ 82 (137)
+.|+|....+ ..+.+.++.+.+|.+|-..|.+ ..+.+. . ..+|. -+|..|.++.+ |.++||.||+
T Consensus 3 ~rVtv~~~~~-~~~Dl~lP~~vpv~~li~~l~~--~~~~~~~~~~~~~~~~L~~~~g~~L~~~~t-----L~~~gV~dGd 74 (79)
T PF08817_consen 3 CRVTVDAGNG-RQVDLALPADVPVAELIPELVE--LLGLPGDDPPGHGQWVLARAGGRPLDPDQT-----LADAGVRDGD 74 (79)
T ss_dssp EEEEEE-TT---EEEEEEETTSBTTHHHHHHHH--HS---S---TT-E-EEEG-GGTEEEETTSB-----CGGGT--TT-
T ss_pred EEEEEEcCCC-cEEEEEcCCCCcHHHHHHHHHH--HhCCccCCCCCcceEEEEecCCcccCCcCc-----HhHcCCCCCC
Confidence 5677777543 3388999999999999999987 565432 2 35565 67999998888 9999999999
Q ss_pred EEEE
Q 032588 83 SVIA 86 (137)
Q Consensus 83 tLlv 86 (137)
.|++
T Consensus 75 ~L~L 78 (79)
T PF08817_consen 75 VLVL 78 (79)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9953
No 57
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00031 Score=59.28 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=58.7
Q ss_pred CCCCCCCCceEEEEEeCCCCCc-EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCC
Q 032588 1 MGMGEISESVEITVKTIGPAPP-SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLS 79 (137)
Q Consensus 1 ~~~~~~~~~m~I~VKt~~~~~~-~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~ 79 (137)
|+-...+..+++.||+.+.++. ..|..+..+||++||..++.....+.-+..|||||.||.|.|... |.+.-.+
T Consensus 1 meq~~~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qc-----l~d~lrk 75 (391)
T KOG4583|consen 1 MEQTIFEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQC-----LTDWLRK 75 (391)
T ss_pred CCcccCCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchh-----HHHHHHH
Confidence 3333445679999999988773 235555669999999998762222333455999999999999888 7766543
Q ss_pred C--CCEE-EEEecCC
Q 032588 80 N--GDSV-IAAVKPK 91 (137)
Q Consensus 80 d--g~tL-lv~~~p~ 91 (137)
. .+.+ +||..+.
T Consensus 76 q~k~Hv~hlvcnsk~ 90 (391)
T KOG4583|consen 76 QVKEHVKHLVCNSKE 90 (391)
T ss_pred HHHHHHHHHhcCCCC
Confidence 3 3444 6665443
No 58
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.003 Score=50.32 Aligned_cols=112 Identities=13% Similarity=0.221 Sum_probs=70.1
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-ecC-eecCCCCCCCCCCccccCCCCCCEEE-
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-FRG-KVLDDTQDDDDRDDVYLQLSNGDSVI- 85 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi-~~G-k~L~D~~~~d~~~L~~~~I~dg~tLl- 85 (137)
++.|.|-+....-+....++++.||.+||.+++. .+|.+++..+|. |+| -...-...+++.+|..|+..+|-.|.
T Consensus 1 ~v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~--~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihv 78 (234)
T KOG3206|consen 1 MVRVVISSSLNDFRTEKRLSNSLTLAQFKDKLEL--LTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHV 78 (234)
T ss_pred CeEEEEecccccchhhhhcCCcCcHHHHHhhhhh--hhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEE
Confidence 3667777665544345688999999999999998 999999999994 666 11211222334569999999998884
Q ss_pred EEecCCCCCc----cccccCccCCcccccccccCCcchHHHHHH
Q 032588 86 AAVKPKPPPR----HLRDDTCIDDDDLDLKFKLPQSTSRWKRKL 125 (137)
Q Consensus 86 v~~~p~~~~~----~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 125 (137)
+=..+..-.. -+...+++++++ -.+=.+|-.+||++-
T Consensus 79 iD~~~~~~~~~~d~s~veky~iSee~---Y~qRtdSvr~~kk~~ 119 (234)
T KOG3206|consen 79 IDSNAQSISNTEDESIVEKYEISEED---YLQRTDSVRRFKKKH 119 (234)
T ss_pred EecCccccccccccccceeeecCHHH---HhhhhHHHHHHHHHh
Confidence 3333332211 011122333333 223346777888764
No 59
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.85 E-value=0.0019 Score=52.79 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=54.2
Q ss_pred eEEEEEeCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCCCCc----eEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 10 VEITVKTIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIEN----LRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 10 m~I~VKt~~~~~~~~-l~v~~~~TV~dLK~~Ia~~~~~~ip~e~----qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
|+|++.+.++..-+. ..++.+.|+.|+++.|+. ...++.+.+ .|+..+|+.|.|+.+ |++|+..+|+++
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~-~~~k~~~~~~r~tlr~e~kgkpl~~~s~-----l~e~~~~s~~~i 74 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISA-KNLKITPYRIRLTLRVEPKGKPLIDNSK-----LQEYGDGSGATI 74 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHH-hhhccCccchhheeeccCCCccccchhH-----HHHhccCCCCEE
Confidence 578888776644244 456667999999987775 144566643 334467999998888 999999999999
Q ss_pred EEEec
Q 032588 85 IAAVK 89 (137)
Q Consensus 85 lv~~~ 89 (137)
+|+--
T Consensus 75 ~vKDL 79 (297)
T KOG1639|consen 75 YVKDL 79 (297)
T ss_pred EEecc
Confidence 88653
No 60
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.81 E-value=0.016 Score=38.62 Aligned_cols=74 Identities=9% Similarity=0.127 Sum_probs=57.4
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
....|.||..+|++ +...++++.||.+|.+-|.. ..+.......|+ |-.+.+.++.. +.+|.++|+..+.+|+
T Consensus 3 ~~~~I~iRlPdG~r-i~~~F~~~~tl~~v~~~v~~--~~~~~~~~f~L~t~~Prk~l~~~d~--~~tL~e~gL~p~~~l~ 77 (80)
T smart00166 3 DQCRLQIRLPDGSR-LVRRFPSSDTLRTVYEFVSA--ALTDGNDPFTLNSPFPRRTFTKDDY--SKTLLELALLPSSTLV 77 (80)
T ss_pred CeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--cccCCCCCEEEEeCCCCcCCccccc--cCCHHHCCCCCceEEE
Confidence 56889999999987 77899999999999999965 556666677775 55666754321 2569999998888886
Q ss_pred E
Q 032588 86 A 86 (137)
Q Consensus 86 v 86 (137)
|
T Consensus 78 v 78 (80)
T smart00166 78 L 78 (80)
T ss_pred E
Confidence 5
No 61
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.64 E-value=0.031 Score=38.18 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=59.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC--eecCCC---CCCCCCCccccCCCCC
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG--KVLDDT---QDDDDRDDVYLQLSNG 81 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G--k~L~D~---~~~d~~~L~~~~I~dg 81 (137)
...++|.||.++|++ +.-.++.+.||.+|..-|.. .+..++...|++.= +.+... ..+.+.+|.+.||.+.
T Consensus 2 ~~~~~I~iRlp~G~R-l~rrF~~~~tl~~l~~fv~~---~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s 77 (85)
T cd01774 2 PDTVKIVFKLPNGTR-VERRFLFTQSLRVIHDFLFS---LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNS 77 (85)
T ss_pred CceEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCc
Confidence 356899999999987 66789999999999999964 45677889998765 777521 1223456999999988
Q ss_pred CEEEEE
Q 032588 82 DSVIAA 87 (137)
Q Consensus 82 ~tLlv~ 87 (137)
.+|+|-
T Consensus 78 ~~L~V~ 83 (85)
T cd01774 78 EVLFVQ 83 (85)
T ss_pred cEEEEe
Confidence 888663
No 62
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.57 E-value=0.015 Score=39.44 Aligned_cols=69 Identities=12% Similarity=0.229 Sum_probs=54.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC---CceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~---e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
++|-++.-+++. +.+.++.--++..|-..+.++.+-.+++ ...|..-+++.|.++.. |.+|+|.+||.|
T Consensus 7 VTvD~t~y~g~~-yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~k-----L~d~~IadGD~L 78 (81)
T COG5417 7 VTVDFTNYNGGT-YDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDK-----LIDYQIADGDIL 78 (81)
T ss_pred EEEEeEecCCce-EEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCce-----EEeccccCCCEE
Confidence 455556667665 8899999999999988888744444443 34899999999998888 999999999998
No 63
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.48 E-value=0.047 Score=35.98 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=52.8
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
+..|.||.++|+. +.-.++.+.||.+|.+-|.. . +.......|+ |-.+.+.++ +.+.+|.++||. .+.+++
T Consensus 2 ~t~i~iRlpdG~~-~~~~F~~~~tl~~l~~fv~~--~-~~~~~~f~L~t~~Pr~~~~~~--~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKR-LEQRFNSTHKLSDVRDFVES--N-GPPAEPFTLMTSFPRRVLTDL--DYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCE-EEEEeCCCCCHHHHHHHHHH--c-CCCCCCEEEEeCCCCccCCCC--CccCcHHHcCCc-cceEEE
Confidence 4678999999976 77899999999999999975 3 3335667776 556777652 234679999998 555544
No 64
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.07 E-value=0.017 Score=37.78 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=39.9
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
..|.+.|++++.++-+.... ++++.+++-.|.|+++.|.-+.+ .-..||.+|.+|
T Consensus 9 ~~vkvtp~~~l~~VL~eac~--k~~l~~~~~~L~h~~k~ldlslp-----~R~snL~n~akL 63 (65)
T PF11470_consen 9 FKVKVTPNTTLNQVLEEACK--KFGLDPSSYDLKHNNKPLDLSLP-----FRLSNLPNNAKL 63 (65)
T ss_dssp EEE---TTSBHHHHHHHHHH--HTT--GGG-EEEETTEEESSS-B-----HHHH---SS-EE
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCCccceEEEECCEEeccccc-----eeecCCCCCCEE
Confidence 78999999999999999988 99999999999999999976666 888899999887
No 65
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.91 E-value=0.073 Score=35.75 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=52.0
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC-CCCCceEEE--ecCeecCCCCCCCCCCccccCCCCC
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH-LPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNG 81 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~-ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg 81 (137)
.+.+|.||..+|++ +...++.+.||++|.+-|.. ..+ .......|+ |-.+.|.|+ +.+|.+.|+.+.
T Consensus 3 p~t~iqiRlpdG~r-~~~rF~~~~tv~~l~~~v~~--~~~~~~~~~f~L~t~fP~k~l~~~----~~Tl~eagL~~s 72 (79)
T cd01770 3 PTTSIQIRLADGKR-LVQKFNSSHRVSDVRDFIVN--ARPEFAARPFTLMTAFPVKELSDE----SLTLKEANLLNA 72 (79)
T ss_pred CeeEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--hCCCCCCCCEEEecCCCCcccCCC----CCcHHHCCCcCc
Confidence 46789999999987 77899999999999999976 432 223556775 678888654 367999999864
No 66
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.91 E-value=0.11 Score=34.69 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
...|.||..+|+. +.-.++.+.|+.+|.+-|.. ..+ ......|+ |--|.+.++. -+.+|.++|+.+..+|+|
T Consensus 4 ~~~i~iRlp~G~~-~~~~F~~~~tl~~v~~fV~~--~~~-~~~~f~L~t~fPrk~~~~~d--~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTT-LKQTFKAREQLAAVRLFVEL--NTG-NGGPFTLMTPFPRKVFTEDD--MEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCE-EEEEeCCCChHHHHHHHHHH--cCC-CCCCEEEEeCCCCeECCccc--ccCCHHHCCCCCceEEEE
Confidence 4789999999976 77789999999999999986 332 23556776 6677775432 135699999998888865
No 67
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.024 Score=45.30 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=47.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~t 83 (137)
+.+.++.-.|++++|.+++. +.++.+--||++|.|+.|-|... |..++|..|..
T Consensus 159 ~~lta~~~Dtv~eik~~L~A--aeg~D~~sQrif~Sg~~l~dkt~-----LeEc~iekg~r 212 (231)
T KOG0013|consen 159 FWLTAPHYDTVGEIKRALRA--AEGVDPLSQRIFFSGGVLVDKTD-----LEECKIEKGQR 212 (231)
T ss_pred eeecccCcCcHHHHHHHHHH--hhccchhhheeeccCCceecccc-----ceeeeecCCCE
Confidence 55677777999999999988 89999999999999999987666 99999999943
No 68
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.54 E-value=0.22 Score=33.59 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=58.3
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
..++|.||.++|+. ..-....+.++.+|..-|.. .|.+++..+|+ |-=|.+.+.. -+.+|.+.|+....+|+
T Consensus 3 ~~~~i~iRlP~G~r-~~rrF~~t~~L~~l~~fv~~---~~~~~~~f~L~t~fPRk~~~~~d--~~~TL~e~gL~p~~~L~ 76 (80)
T cd01771 3 PISKLRVRTPSGDF-LERRFLGDTPLQVLLNFVAS---KGYPIDEYKLLSSWPRRDLTQLD--PNFTLLELKLYPQETLI 76 (80)
T ss_pred CeEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---cCCCCCCEEEecCCCCCCCcCCC--CCCcHHHcCCCCCcEEE
Confidence 56899999999976 66789999999999999975 47888899996 5577774221 13569999999888886
Q ss_pred E
Q 032588 86 A 86 (137)
Q Consensus 86 v 86 (137)
|
T Consensus 77 V 77 (80)
T cd01771 77 L 77 (80)
T ss_pred E
Confidence 6
No 69
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.97 E-value=0.43 Score=32.57 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=59.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
...-+|.||.++|+. ..-....+.++.+|..-|.. .|.+++..+|+ |-=|.+..+.. +.+|.++|+.+..+|
T Consensus 3 ~~~t~i~vRlP~G~r-~~rrF~~~~~L~~v~~fv~~---~g~~~~~f~L~t~FPRr~~~~~d~--~~TL~e~GL~P~~~L 76 (82)
T cd01773 3 GPKARLMLRYPDGKR-EQIALPEQAKLLALVRHVQS---KGYPNERFELLTNFPRRKLSHLDY--DITLQEAGLCPQETV 76 (82)
T ss_pred CCeeEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---cCCCCCCEEEecCCCCcccCCccc--CCCHHHcCCCCCcEE
Confidence 356789999999987 77788999999999998875 57888999997 55677743322 356999999999999
Q ss_pred EEE
Q 032588 85 IAA 87 (137)
Q Consensus 85 lv~ 87 (137)
+|-
T Consensus 77 fVq 79 (82)
T cd01773 77 FVQ 79 (82)
T ss_pred EEe
Confidence 763
No 70
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.15 Score=35.79 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=55.0
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
-|.++|-..++.. +-+.|-.+++...|-...+. ..|-..+.+|++|.|+.+.-+++ -.+++..+++.|
T Consensus 24 hinLkvv~qd~te-lfFkiKktT~f~klm~af~~--rqGK~m~slRfL~dG~rI~~dqT-----P~dldmEdnd~i 91 (103)
T COG5227 24 HINLKVVDQDGTE-LFFKIKKTTTFKKLMDAFSR--RQGKNMSSLRFLFDGKRIDLDQT-----PGDLDMEDNDEI 91 (103)
T ss_pred ccceEEecCCCCE-EEEEEeccchHHHHHHHHHH--HhCcCcceeEEEEcceecCCCCC-----hhhcCCccchHH
Confidence 3444444444433 66788899999999999987 89999999999999999988777 888899888877
No 71
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.71 E-value=0.15 Score=39.12 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=40.6
Q ss_pred eEEEEEeCCCC---CcEEEEecCCCcHHHHHHHHHhccCCCCCCCce-EEEe-cCeec
Q 032588 10 VEITVKTIGPA---PPSRLSVSSPIKVRDLRKLIATSSANHLPIENL-RLVF-RGKVL 62 (137)
Q Consensus 10 m~I~VKt~~~~---~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~q-RLi~-~Gk~L 62 (137)
|+|.|++..|. .++.+.+++++||.+|+..|.. ..++++..| -|.+ .++.|
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~--~~~~~~~~~~~L~~~~n~~l 56 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSE--RLPIPSSSQLYLTTNSNGQL 56 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHh--hcCCCccceeEEEEeCCCee
Confidence 68999999885 3477899999999999999998 888888884 3444 34555
No 72
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.04 E-value=0.27 Score=32.88 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=43.7
Q ss_pred ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCcccc-CCCCCCEEEEEecC
Q 032588 27 VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYL-QLSNGDSVIAAVKP 90 (137)
Q Consensus 27 v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~-~I~dg~tLlv~~~p 90 (137)
|+++.+|.++++.+.. ....+.-....|.++|+.|.+... |.++ |+++|.+|-+.-+|
T Consensus 1 v~~~d~v~dvrq~L~~-~~~t~~~Tn~~L~~~g~~L~~~~e-----l~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAE-SPETCYLTNFSLEHNGQRLDDFVE-----LSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHh-CccccceeEEEEEECCCccCCchh-----hhhhhCCCCCcEEEEEecC
Confidence 4678899999999987 233477778999999999976655 6665 48889999433333
No 73
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=92.84 E-value=0.39 Score=32.74 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=34.4
Q ss_pred cEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032588 22 PSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV 61 (137)
Q Consensus 22 ~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~ 61 (137)
.+.+.+++..+..+|+++|.+ +.++|++..+|-|+-..
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~--kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISS--KLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHH--HhCCCchhcEEEeccCC
Confidence 378999999999999999999 99999999999998543
No 74
>PRK06437 hypothetical protein; Provisional
Probab=92.80 E-value=1.1 Score=29.00 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=37.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
..++++...||.+|= + ..+++++..-+...|..+.. ++-|++||.| ++
T Consensus 13 ~~~~i~~~~tv~dLL---~---~Lgi~~~~vaV~vNg~iv~~----------~~~L~dgD~Veiv 61 (67)
T PRK06437 13 KTIEIDHELTVNDII---K---DLGLDEEEYVVIVNGSPVLE----------DHNVKKEDDVLIL 61 (67)
T ss_pred eEEEcCCCCcHHHHH---H---HcCCCCccEEEEECCEECCC----------ceEcCCCCEEEEE
Confidence 567888889998884 3 36788888988899999962 3468899999 54
No 75
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.73 E-value=0.56 Score=30.99 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=40.6
Q ss_pred ceEEEEEeCC------CCCcEEEEecCCCcHHHHHHHHHhccCC-CCCC--CceEEEecCeecCCCCCCCCCCccccCCC
Q 032588 9 SVEITVKTIG------PAPPSRLSVSSPIKVRDLRKLIATSSAN-HLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLS 79 (137)
Q Consensus 9 ~m~I~VKt~~------~~~~~~l~v~~~~TV~dLK~~Ia~~~~~-~ip~--e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~ 79 (137)
+|+|+|+..+ +.....++++..+||.+|.+.+.. .. ++.. ..-.+...|+...+ +.-|+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~--~~p~l~~~~~~~~vavN~~~v~~----------~~~l~ 68 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVA--KFPSLEEVRSCCVLALNEEYTTE----------SAALK 68 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHH--HChhHHHHhhCcEEEECCEEcCC----------CcCcC
Confidence 4778888542 333356788888999999999976 33 1111 11234456665432 23588
Q ss_pred CCCEEEE
Q 032588 80 NGDSVIA 86 (137)
Q Consensus 80 dg~tLlv 86 (137)
+||.|-+
T Consensus 69 dgDeVai 75 (82)
T PLN02799 69 DGDELAI 75 (82)
T ss_pred CCCEEEE
Confidence 9999933
No 76
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=92.55 E-value=0.18 Score=43.24 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=54.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~~ 89 (137)
+.+++..+.....|+..++. .++++.+..-|+|+++.+..+.. ..+.++|+++|++|+.-.+
T Consensus 15 ~~i~v~~dg~L~nl~aL~~~--d~g~~~~~~~li~n~~~l~s~~s---~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 15 FPIPVTTDGELNNLAALCWK--DTGIVYDPSDLIYNPRPLVSNES---QGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred eccccccccchhhHHHHHHH--HhCcccchhhcccCCCccccchh---hhhhhcccccceeEeccCC
Confidence 77888888999999999988 99999999999999999987644 6799999999999976554
No 77
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=92.49 E-value=0.43 Score=31.17 Aligned_cols=45 Identities=29% Similarity=0.448 Sum_probs=36.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR 58 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~ 58 (137)
++|+++. ++ ..+.+.++++.|..+|+.+|++ .++++.+..+|-|.
T Consensus 2 ~~vK~~~-~~-~~~~~~~~~~~s~~dL~~~i~~--~~~~~~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRY-GG-ETRRLSVPRDISFEDLRSKVAK--RFGLDNQSFTLKYQ 46 (81)
T ss_pred ccEEEEE-CC-EEEEEEECCCCCHHHHHHHHHH--HhCCCCCCeEEEEE
Confidence 4566666 33 4377999999999999999999 88888778888887
No 78
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=91.51 E-value=0.52 Score=32.51 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=35.3
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC---ceEEEe
Q 032588 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE---NLRLVF 57 (137)
Q Consensus 11 ~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e---~qRLi~ 57 (137)
..++|+++|.. +.+.+.++..+.+|++.|++ +.|+..+ ...|-|
T Consensus 2 ~FK~~~~~Grv-hRf~~~~s~~~~~L~~~I~~--Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRV-HRFRLRPSESLEELRTLISQ--RLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCE-EEEEecCCCCHHHHHHHHHH--HhCCccccCCcccEEE
Confidence 35788887755 88999999999999999999 9998875 444444
No 79
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.10 E-value=0.77 Score=39.27 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=47.8
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEec---CeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR---GKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 25 l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~---Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
..+.-.-||.||+..+.. +-|+.+.+.||.|- ||.-..+..+-++.|.+|+|++||.++|-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~--~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDP--KVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhcc--ccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 455666799999999988 99999999999874 44444333444577999999999999774
No 80
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=90.96 E-value=0.56 Score=30.67 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=37.7
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G 59 (137)
++.|++...+... ..+.++.+.|..+|+.+|++ .++.+....+|-|..
T Consensus 1 t~~vK~~~~~~~~-~~~~~~~~~s~~~L~~~i~~--~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIR-RIISLPSDVSFDDLRSKIRE--KFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEE-EEEEECSTSHHHHHHHHHHH--HHTTSTSSEEEEEEE
T ss_pred CEEEEEEECCeeE-EEEEcCCCCCHHHHHHHHHH--HhCCCCccEEEEeeC
Confidence 4566666655433 33899999999999999999 888888888888863
No 81
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=90.81 E-value=3.1 Score=26.92 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=41.8
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
+|+|++.... .+..++++..+||.+|-+. .+++++.-.+...|..... +.-|++||.| ++
T Consensus 4 mm~v~vng~~--~~~~~~~~~~~tv~~ll~~------l~~~~~~v~v~vNg~iv~~----------~~~l~~gD~Veii 64 (70)
T PRK08364 4 MIRVKVIGRG--IEKEIEWRKGMKVADILRA------VGFNTESAIAKVNGKVALE----------DDPVKDGDYVEVI 64 (70)
T ss_pred EEEEEEeccc--cceEEEcCCCCcHHHHHHH------cCCCCccEEEEECCEECCC----------CcCcCCCCEEEEE
Confidence 4666664432 3356888888999988654 4566777777888888742 3368999999 54
No 82
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=89.32 E-value=0.95 Score=30.67 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=31.1
Q ss_pred EEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEec
Q 032588 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFR 58 (137)
Q Consensus 13 ~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~-e~qRLi~~ 58 (137)
+||..-+...+.+.++++.+..+|++.|+. .+++.. ....|-|.
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~--r~~~~~~~~f~LkY~ 46 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAK--RFKLDDMSAFDLKYL 46 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHH--HhCCCCCCeeEEEEE
Confidence 344332334478999999999999999998 888754 44555443
No 83
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=89.08 E-value=2.5 Score=27.22 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=36.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCC----CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHL----PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~i----p~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
..++++...||.+|.+.+.. ..+- ......+...|+.... +.-|++||.|.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~--~~~~~~~~~~~~~~v~vNg~~v~~----------~~~l~~gD~v~ 72 (80)
T cd00754 18 EELELPEGATVGELLDALEA--RYPGLLEELLARVRIAVNGEYVRL----------DTPLKDGDEVA 72 (80)
T ss_pred EEEECCCCCcHHHHHHHHHH--HCchHHHhhhhcEEEEECCeEcCC----------CcccCCCCEEE
Confidence 56788778999999999986 5421 2344566677877752 23689999993
No 84
>PRK01777 hypothetical protein; Validated
Probab=88.79 E-value=4.9 Score=27.98 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=41.2
Q ss_pred ceEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhccCCCCCCC-------ceEEEecCeecCCCCCCCCCCccccCCC
Q 032588 9 SVEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHLPIE-------NLRLVFRGKVLDDTQDDDDRDDVYLQLS 79 (137)
Q Consensus 9 ~m~I~VKt~~~~~~--~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e-------~qRLi~~Gk~L~D~~~~d~~~L~~~~I~ 79 (137)
+|+|.|-...+... ..++++..+||.++=.. .|++.+ ...+.-.|+...- +.-|+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~------sgi~~~~pei~~~~~~vgI~Gk~v~~----------d~~L~ 66 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRA------SGLLELRTDIDLAKNKVGIYSRPAKL----------TDVLR 66 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH------cCCCccCcccccccceEEEeCeECCC----------CCcCC
Confidence 58888876555442 34789999999987543 444444 2355566776642 33689
Q ss_pred CCCEE-EE
Q 032588 80 NGDSV-IA 86 (137)
Q Consensus 80 dg~tL-lv 86 (137)
+||.| ++
T Consensus 67 dGDRVeIy 74 (95)
T PRK01777 67 DGDRVEIY 74 (95)
T ss_pred CCCEEEEe
Confidence 99999 76
No 85
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=88.68 E-value=1.8 Score=29.56 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=29.0
Q ss_pred EEecC-CCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCC-----CCCCCCccccCCCCCCEEEE
Q 032588 25 LSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ-----DDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 25 l~v~~-~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~-----~~d~~~L~~~~I~dg~tLlv 86 (137)
|.++. .+|+++|-+.|-. ...|+.. --+.+.|+.|-+.. .--+++|+++||.+|+.|.|
T Consensus 2 v~~d~~~~TL~~lv~~Vlk-~~Lg~~~--P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v 66 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLK-KKLGMNE--PDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTV 66 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCC-CCS--SS--EEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEE
T ss_pred EEEechhCcHHHHHHHHHH-hccCCCC--CEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEE
Confidence 44554 4899999998753 1334332 22222444442221 11237799999999999865
No 86
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=88.50 E-value=2.4 Score=27.05 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=38.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
..+++...|+.+| +. ..++++...-+.+.|..+..+.. ..+ |++||.| ++
T Consensus 9 ~~~~~~~~tl~~l---l~---~l~~~~~~vav~~N~~iv~r~~~------~~~-L~~gD~ieIv 59 (65)
T PRK05863 9 QVEVDEQTTVAAL---LD---SLGFPEKGIAVAVDWSVLPRSDW------ATK-LRDGARLEVV 59 (65)
T ss_pred EEEcCCCCcHHHH---HH---HcCCCCCcEEEEECCcCcChhHh------hhh-cCCCCEEEEE
Confidence 3466677888777 43 36789999999999999876554 345 9999999 65
No 87
>PRK07440 hypothetical protein; Provisional
Probab=88.18 E-value=3.9 Score=26.66 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=44.3
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
.+|+|+| +|+ ..+++...||.+|-+ ..++++...-+.+.|..+..+. -.+.-+++||.| ++
T Consensus 3 ~~m~i~v---NG~---~~~~~~~~tl~~lL~------~l~~~~~~vav~~N~~iv~r~~------w~~~~L~~gD~IEIv 64 (70)
T PRK07440 3 NPITLQV---NGE---TRTCSSGTSLPDLLQ------QLGFNPRLVAVEYNGEILHRQF------WEQTQVQPGDRLEIV 64 (70)
T ss_pred CceEEEE---CCE---EEEcCCCCCHHHHHH------HcCCCCCeEEEEECCEEeCHHH------cCceecCCCCEEEEE
Confidence 4677776 332 467778889887743 3677888888889999997433 456679999999 55
No 88
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=87.44 E-value=4.6 Score=25.79 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=34.8
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
.+++..++|+.+||.++.. ... -+||.|=+.+++ +-|++||.|.+.
T Consensus 9 ~~~~~~~~tl~~lr~~~k~--~~D------I~I~NGF~~~~d----------~~L~e~D~v~~I 54 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKP--DAD------IVILNGFPTKED----------IELKEGDEVFLI 54 (57)
T ss_pred EEEcCCCcCHHHHHHhhCC--CCC------EEEEcCcccCCc----------cccCCCCEEEEE
Confidence 5788889999999998754 322 569999888654 458899999544
No 89
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=86.28 E-value=2.2 Score=27.55 Aligned_cols=45 Identities=29% Similarity=0.339 Sum_probs=33.6
Q ss_pred EEEEEeCCCCCcEEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032588 11 EITVKTIGPAPPSRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (137)
Q Consensus 11 ~I~VKt~~~~~~~~l~v~-~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G 59 (137)
.|+++..+. . +.+.++ .+.|..+|+.+|++ .++++....+|-|..
T Consensus 2 ~vK~~~~~~-~-~~~~~~~~~~s~~~L~~~i~~--~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYGGE-I-RRFVVVSRSISFEDLRSKIAE--KFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEecCC-C-EEEEEecCCCCHHHHHHHHHH--HhCCCCCcEEEEeeC
Confidence 355555433 3 678888 88999999999999 888877667776654
No 90
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=85.56 E-value=1.7 Score=29.07 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=23.5
Q ss_pred EEEeCCCCCcEEEEecCC-CcHHHHHHHHHhccCCCCCCC
Q 032588 13 TVKTIGPAPPSRLSVSSP-IKVRDLRKLIATSSANHLPIE 51 (137)
Q Consensus 13 ~VKt~~~~~~~~l~v~~~-~TV~dLK~~Ia~~~~~~ip~e 51 (137)
..|-.+......|.++.. .+|.+||..|.+....|-..+
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~d 41 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKLGKGTD 41 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT---TTT
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHHhCCCcCCc
Confidence 445444555456888864 899999999987333433333
No 91
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=85.28 E-value=3.8 Score=25.88 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=38.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
.++++..+||.+|.+. .+++++...+...|+.+..+. -.+.-|++||.| ++
T Consensus 8 ~~~~~~~~tv~~ll~~------l~~~~~~i~V~vNg~~v~~~~------~~~~~L~~gD~V~ii 59 (65)
T cd00565 8 PREVEEGATLAELLEE------LGLDPRGVAVALNGEIVPRSE------WASTPLQDGDRIEIV 59 (65)
T ss_pred EEEcCCCCCHHHHHHH------cCCCCCcEEEEECCEEcCHHH------cCceecCCCCEEEEE
Confidence 4677888899988754 446778888889999986432 334579999999 54
No 92
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=84.74 E-value=5.6 Score=24.96 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=37.6
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
..+++...||.+|= . ..+++++..-+.+.|..+.... -.+.-|++||.| ++
T Consensus 9 ~~~~~~~~tl~~lL---~---~l~~~~~~vav~vNg~iv~r~~------~~~~~l~~gD~vei~ 60 (66)
T PRK05659 9 PRELPDGESVAALL---A---REGLAGRRVAVEVNGEIVPRSQ------HASTALREGDVVEIV 60 (66)
T ss_pred EEEcCCCCCHHHHH---H---hcCCCCCeEEEEECCeEeCHHH------cCcccCCCCCEEEEE
Confidence 45777888888774 3 3678888888889998886432 344568999999 65
No 93
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=84.19 E-value=4.5 Score=25.51 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=37.5
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
.++++..+||.+|.+. .+++++...+.+.|..+..+. -.++-|++||.| ++
T Consensus 7 ~~~~~~~~tv~~ll~~------l~~~~~~v~v~vN~~iv~~~~------~~~~~L~~gD~veii 58 (64)
T TIGR01683 7 PVEVEDGLTLAALLES------LGLDPRRVAVAVNGEIVPRSE------WDDTILKEGDRIEIV 58 (64)
T ss_pred EEEcCCCCcHHHHHHH------cCCCCCeEEEEECCEEcCHHH------cCceecCCCCEEEEE
Confidence 4677788899988764 446677788889999886432 344579999999 54
No 94
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=83.91 E-value=8.8 Score=25.05 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=35.0
Q ss_pred EEEEecCC-CcHHHHHHHHHhccCCC-CC--CCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 23 SRLSVSSP-IKVRDLRKLIATSSANH-LP--IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 23 ~~l~v~~~-~TV~dLK~~Ia~~~~~~-ip--~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
..++++.+ +||.+|.+.+.+ ... +- .....+...|+...+ +.-|++||.| ++
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~--~~p~l~~~~~~~~v~vn~~~v~~----------~~~l~dgDevai~ 74 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAK--EGPELAASRGQVMVAVNEEYVTD----------DALLNEGDEVAFI 74 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHH--hCchhhhhccceEEEECCEEcCC----------CcCcCCCCEEEEe
Confidence 46788877 899999999987 542 11 123455566666542 3478999999 44
No 95
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=83.43 E-value=9.3 Score=25.02 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=40.3
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
.++++...|+.+| ++ ..+++++..-..+.|.....+. -.+.-+++||.| +|.
T Consensus 11 ~~e~~~~~tv~dL---L~---~l~~~~~~vav~vNg~iVpr~~------~~~~~l~~gD~ievv~ 63 (68)
T COG2104 11 EVEIAEGTTVADL---LA---QLGLNPEGVAVAVNGEIVPRSQ------WADTILKEGDRIEVVR 63 (68)
T ss_pred EEEcCCCCcHHHH---HH---HhCCCCceEEEEECCEEccchh------hhhccccCCCEEEEEE
Confidence 5677777899888 44 4788999999999999997533 356688999999 653
No 96
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=81.46 E-value=2.7 Score=28.51 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=31.8
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G 59 (137)
+.+.+++..+..+|..+|++ +...+++.-+|-|+-
T Consensus 9 Vai~v~~g~~y~~L~~~ls~--kL~l~~~~~~LSY~~ 43 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQ--ALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEccCCCCHHHHHHHHHH--HhcCChhhcEEEecC
Confidence 55788899999999999999 999999999999974
No 97
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=81.05 E-value=8.7 Score=26.09 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=38.1
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
..+++...||.+| +.. .++++...-+-+.|..+..+. -.+.-|++||.| ++
T Consensus 27 ~~~~~~~~tl~~L---L~~---l~~~~~~vAVevNg~iVpr~~------w~~t~L~egD~IEIv 78 (84)
T PRK06083 27 SIQVDISSSLAQI---IAQ---LSLPELGCVFAINNQVVPRSE------WQSTVLSSGDAISLF 78 (84)
T ss_pred EEEcCCCCcHHHH---HHH---cCCCCceEEEEECCEEeCHHH------cCcccCCCCCEEEEE
Confidence 3566778888877 433 567888888889999996443 566789999999 55
No 98
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=78.51 E-value=7.7 Score=33.54 Aligned_cols=68 Identities=21% Similarity=0.199 Sum_probs=50.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCC
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNG 81 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg 81 (137)
.+-.|.||..+|++ +...++.+-||.+++..|.. +.-+-+-..|-|+ |--|.|.|+ +.||++.||.|-
T Consensus 304 PtTsIQIRLanG~R-lV~~fN~sHTv~DIR~fI~~-aRp~~~~~~F~L~~~FPpk~l~D~----sqTle~AgL~Ns 373 (380)
T KOG2086|consen 304 PTTSIQIRLANGTR-LVLKFNHSHTVSDIREFIDT-ARPGDSSTYFILMMAFPPKPLSDD----SQTLEEAGLLNS 373 (380)
T ss_pred CcceEEEEecCCce-eeeeccCcccHHHHHHHHHh-cCCCCcCCceeeeecCCCcccCCc----chhHHhccchhh
Confidence 45678888899987 66789999999999999997 2334555556666 456777653 357999999765
No 99
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=77.10 E-value=15 Score=23.52 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=36.7
Q ss_pred EEecCC-CcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 25 LSVSSP-IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 25 l~v~~~-~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
.+++.. .||.+|= + ..++++...-+.+.|..+..+. -...-|++||.| ++
T Consensus 10 ~~~~~~~~tv~~lL---~---~l~~~~~~vav~vN~~iv~r~~------w~~~~L~~gD~iEIv 61 (67)
T PRK07696 10 IEVPESVKTVAELL---T---HLELDNKIVVVERNKDILQKDD------HTDTSVFDGDQIEIV 61 (67)
T ss_pred EEcCCCcccHHHHH---H---HcCCCCCeEEEEECCEEeCHHH------cCceecCCCCEEEEE
Confidence 456665 5777764 3 3677888888889999997543 456679999999 65
No 100
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=76.22 E-value=14 Score=23.25 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=32.0
Q ss_pred CCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 30 PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 30 ~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
..|+.+|.+.+ +++++...+-+.|..+..+. -.+.-|++||.| ++
T Consensus 14 ~~tl~~Ll~~l------~~~~~~vavavN~~iv~~~~------~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 14 ATTLALLLAEL------DYEGNWLATAVNGELVHKEA------RAQFVLHEGDRIEIL 59 (65)
T ss_pred cCcHHHHHHHc------CCCCCeEEEEECCEEcCHHH------cCccccCCCCEEEEE
Confidence 46888887543 45666677888999886422 445679999999 65
No 101
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=76.13 E-value=13 Score=25.57 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=32.3
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032588 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk 60 (137)
|+||..-+...+.+.|+++.+..+|.++|.+ ++++. ...++-|..-
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrd--kf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRD--KFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHH--HhCCC-CceEEEEEcC
Confidence 3444332333377999999999999999999 99884 4555555543
No 102
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=75.28 E-value=9.2 Score=26.71 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=32.5
Q ss_pred EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe
Q 032588 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF 57 (137)
Q Consensus 14 VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~ 57 (137)
++..+|.. ..+.|+.++|..+|+.++++ .++++.. ..|=|
T Consensus 17 l~Y~GG~t-r~i~V~r~~s~~el~~kl~~--~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGET-RIVSVDRSISFKELVSKLSE--LFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCce-EEEEEcCCCCHHHHHHHHHH--HhCCCCc-eEEEE
Confidence 56778866 77999999999999999998 8888776 55544
No 103
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=75.25 E-value=7 Score=24.80 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=40.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC--CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~--ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
..+.++...||++|.+.+.. ... .......+...|+...+ . -.+.-+++||.|.+
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~--~~p~~~~~~~~~v~vN~~~v~~--~-----~~~~~l~~gD~V~i 70 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAE--RYPELALRDRVAVAVNGEIVPD--D-----GLDTPLKDGDEVAI 70 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCH--HTGGGHTTTTEEEEETTEEEGG--G-----TTTSBEETTEEEEE
T ss_pred eEEecCCCCcHHHHHHHHHh--hccccccCccEEEEECCEEcCC--c-----cCCcCcCCCCEEEE
Confidence 45788889999999999976 331 12377888889998875 2 34557899999943
No 104
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=75.12 E-value=21 Score=31.27 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=51.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCC------CCCceEEE-ecCeecCCCCCCCCCCccccCCCCCC
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHL------PIENLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~i------p~e~qRLi-~~Gk~L~D~~~~d~~~L~~~~I~dg~ 82 (137)
..|+|-... +...+-+|.+..|.||--.|-. ..+- .+..-.|. ..|..|+.+.+ |.+.+|.||+
T Consensus 3 ~RVtV~~~~--~~~DlaLPa~~PvaellP~ll~--~~~~~~~~~~~~~~w~L~r~gG~pL~~~~s-----L~~~gV~DG~ 73 (452)
T TIGR02958 3 CRVTVLAGR--RAVDVALPADVPVAELIPDLVD--LLDDRGAAELGAVRWALARAGGSPLDPDAS-----LAEAGVRDGE 73 (452)
T ss_pred EEEEEeeCC--eeeeeecCCCCcHHHHHHHHHH--HhCcccccCCCCcceEEecCCCCCCCCCCC-----HHHcCCCCCC
Confidence 457776643 3367889999999999877765 3332 23334443 46778887777 9999999999
Q ss_pred EE-EEEecCCCCC
Q 032588 83 SV-IAAVKPKPPP 94 (137)
Q Consensus 83 tL-lv~~~p~~~~ 94 (137)
.| +......+|+
T Consensus 74 ~L~L~p~~~~~p~ 86 (452)
T TIGR02958 74 LLVLVPASATEPA 86 (452)
T ss_pred eEEEeeCCCCCCC
Confidence 99 4443333343
No 105
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=75.05 E-value=5.7 Score=31.90 Aligned_cols=77 Identities=25% Similarity=0.344 Sum_probs=47.4
Q ss_pred CCceEEEEEeCCCCCc-EE----EEecCCCcHHHHHHHHHhccCCCCCCCceEEEec----Cee--cCCCCCCCCCCccc
Q 032588 7 SESVEITVKTIGPAPP-SR----LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----GKV--LDDTQDDDDRDDVY 75 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~-~~----l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~----Gk~--L~D~~~~d~~~L~~ 75 (137)
+..+-|++|.-..... +. +-|+.+.+|.+|-..|.+ ..|+|++..=++|- |.+ ++...+ +..
T Consensus 66 ~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~--~~g~p~~t~l~lyEEi~~~~ie~i~~~~t-----~~~ 138 (249)
T PF12436_consen 66 SDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINE--RAGLPPDTPLLLYEEIKPNMIEPIDPNQT-----FEK 138 (249)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHH--HHT--TT--EEEEEEEETTEEEE--SSSB-----HHH
T ss_pred CCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHH--HcCCCCCCceEEEEEeccceeeEcCCCCc-----hhh
Confidence 3468899995544331 22 578899999999999988 89999887555443 333 444444 999
Q ss_pred cCCCCCCEEEEEecC
Q 032588 76 LQLSNGDSVIAAVKP 90 (137)
Q Consensus 76 ~~I~dg~tLlv~~~p 90 (137)
..|.+||.|++-..+
T Consensus 139 ~el~~GdIi~fQ~~~ 153 (249)
T PF12436_consen 139 AELQDGDIICFQRAP 153 (249)
T ss_dssp TT--TTEEEEEEE--
T ss_pred cccCCCCEEEEEecc
Confidence 999999999775543
No 106
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=74.41 E-value=16 Score=25.21 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=38.0
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC----ee-cCCCCCCCCCCccccCCCCCCEEEEEec
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG----KV-LDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G----k~-L~D~~~~d~~~L~~~~I~dg~tLlv~~~ 89 (137)
++..+....||+.+...+.+ .+.+ .+.-||=-.+ -. |.+.+ .++++.+|.+|.+|++=.+
T Consensus 16 ~t~~FSk~DTI~~v~~~~rk--lf~i-~~E~RLW~~~~~~~~e~L~~~~----~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 16 LTKQFSKTDTIGFVEKEMRK--LFNI-QEETRLWNKYSENSYELLNNPE----ITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEE-TTSBHHHHHHHHHH--HCT--TS-EEEEEECTTTCEEEE--TT----SBTTTTT--TTEEEEEEE-
T ss_pred hHhhccccChHHHHHHHHHH--HhCC-CccceehhccCCcchhhhCCCC----ccHHHccCcCCCEEEEEee
Confidence 55678889999999999988 8999 5557774322 12 33322 3499999999998876443
No 107
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=73.52 E-value=1.1 Score=37.69 Aligned_cols=60 Identities=22% Similarity=0.548 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCCcEEEEec---C--CCcHHHHHHHHHh----c----cCCCCCCCceE-----EEecCeecCCCCC
Q 032588 7 SESVEITVKTIGPAPPSRLSVS---S--PIKVRDLRKLIAT----S----SANHLPIENLR-----LVFRGKVLDDTQD 67 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~---~--~~TV~dLK~~Ia~----~----~~~~ip~e~qR-----Li~~Gk~L~D~~~ 67 (137)
...|.|.+|+.-+.. +.+.++ + +.||.++|..+++ + ..+++|.+..+ |.|+-|.+.|.++
T Consensus 76 ~~sItV~Lks~rnp~-l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~kt 153 (309)
T PF12754_consen 76 SKSITVHLKSLRNPP-LDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKT 153 (309)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CceEEEEeecCCCCC-ceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCc
Confidence 356999999886643 444333 2 4789999999964 0 05678988888 9999999977766
No 108
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=73.42 E-value=9.4 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=31.2
Q ss_pred EEEEeCCCCCcEEEEecC-----CCcHHHHHHHHHhccCCCCCC-CceEEEecC
Q 032588 12 ITVKTIGPAPPSRLSVSS-----PIKVRDLRKLIATSSANHLPI-ENLRLVFRG 59 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~-----~~TV~dLK~~Ia~~~~~~ip~-e~qRLi~~G 59 (137)
|+++. +...+.+.++. +.+..+|+++|++ .+++++ ....|-|.-
T Consensus 3 vKv~y--~~~~rRf~l~~~~~~~d~~~~~L~~kI~~--~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 3 VKVKY--GGTLRRFTFPVAENQLDLNMDGLREKVEE--LFSLSPDADLSLTYTD 52 (91)
T ss_pred EEEEe--CCEEEEEEeccccccCCCCHHHHHHHHHH--HhCCCCCCcEEEEEEC
Confidence 44444 33335677774 7999999999999 889887 556666653
No 109
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=73.28 E-value=10 Score=28.11 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=37.0
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEe
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVF 57 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~-qRLi~ 57 (137)
..+.|.|...+|.. ..+.+++++|+.++-+.++. ..|++... .-|.+
T Consensus 2 ~~~~~~V~l~dg~~-~~~~~~~~~t~~ev~~~v~~--~~~l~~~~~F~L~~ 49 (207)
T smart00295 2 KPRVLKVYLLDGTT-LEFEVDSSTTAEELLETVCR--KLGIRESEYFGLQF 49 (207)
T ss_pred CcEEEEEEecCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCccceeEEEE
Confidence 35778888888875 78999999999999999999 89985422 44443
No 110
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=72.28 E-value=22 Score=22.49 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=36.1
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
..+++...||.+|-+.+ +++.....+-..|..+..+. -.+.-|++||.| ++
T Consensus 9 ~~~~~~~~tl~~ll~~l------~~~~~~vaVavN~~iv~r~~------w~~~~L~~gD~Ieii 60 (66)
T PRK08053 9 PMQCAAGQTVHELLEQL------NQLQPGAALAINQQIIPREQ------WAQHIVQDGDQILLF 60 (66)
T ss_pred EEEcCCCCCHHHHHHHc------CCCCCcEEEEECCEEeChHH------cCccccCCCCEEEEE
Confidence 45777888999887543 44556677888999886432 344569999999 54
No 111
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=72.12 E-value=9.9 Score=25.89 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=26.3
Q ss_pred EEEeCCCCCcEEEEecC--CCcHHHHHHHHHhccCCCCC
Q 032588 13 TVKTIGPAPPSRLSVSS--PIKVRDLRKLIATSSANHLP 49 (137)
Q Consensus 13 ~VKt~~~~~~~~l~v~~--~~TV~dLK~~Ia~~~~~~ip 49 (137)
+||..-+.....+.+++ +.|..+|++.|+. .++++
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~--rf~l~ 38 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKV--SFGLN 38 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHH--HhCCC
Confidence 34433333437789988 6799999999999 89888
No 112
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=71.32 E-value=26 Score=23.01 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=33.8
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC-----CC------CCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANH-----LP------IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~-----ip------~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
..++++ .+||.+|.+.+.+ ... +- .....+...|+....+. ..-|++||.|.+
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~--~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~--------~~~l~dgdev~i 81 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMA--RYPKEFSELFKEGLGLVPNVIILVNGRNVDWGL--------GTELKDGDVVAI 81 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHH--HCcHHHHHhCccCCcccccEEEEECCEecCccC--------CCCCCCCCEEEE
Confidence 567776 8899999999987 432 10 12245556676664321 146899999943
No 113
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=70.78 E-value=20 Score=32.44 Aligned_cols=81 Identities=14% Similarity=0.284 Sum_probs=48.5
Q ss_pred CceEEEEEeCC-CCCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec----Ce-ecCCCCCCC----C-
Q 032588 8 ESVEITVKTIG-PAPPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR----GK-VLDDTQDDD----D- 70 (137)
Q Consensus 8 ~~m~I~VKt~~-~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip------~e~qRLi~~----Gk-~L~D~~~~d----~- 70 (137)
++++|.|-..+ +...+.|.|-.-.||.++|++|-.+.-.+.| ++..-|.++ |+ .|.|....- .
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~w 267 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGW 267 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTE
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCc
Confidence 45777755433 2233678887778999999999875445544 444555443 33 466543100 0
Q ss_pred ---CCccccCCCCCCEE-EEEe
Q 032588 71 ---RDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 71 ---~~L~~~~I~dg~tL-lv~~ 88 (137)
-||.+|+|.+|.+| ++..
T Consensus 268 krLNTL~HY~V~dga~vaLv~k 289 (539)
T PF08337_consen 268 KRLNTLAHYKVPDGATVALVPK 289 (539)
T ss_dssp EE--BHHHHT--TTEEEEEEES
T ss_pred eEeccHhhcCCCCCceEEEeec
Confidence 46899999999999 6554
No 114
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=70.02 E-value=17 Score=23.96 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=35.4
Q ss_pred EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032588 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (137)
Q Consensus 14 VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G 59 (137)
|-.++|+. ..+.+.+..||.|+=+.+.+ +.|+.++.--+.+.|
T Consensus 4 V~LPng~~-t~V~vrpg~ti~d~L~~~c~--kr~l~~~~~~v~~~~ 46 (72)
T cd01760 4 VYLPNGQR-TVVPVRPGMSVRDVLAKACK--KRGLNPECCDVFLLG 46 (72)
T ss_pred EECcCCCe-EEEEECCCCCHHHHHHHHHH--HcCCCHHHEEEEEec
Confidence 34456655 67999999999999999988 999999997777664
No 115
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=69.92 E-value=15 Score=26.95 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=38.6
Q ss_pred EecC-CCcHHHHHHHHHhcc--CCCCCC------CceEEEecC--e-------ecCCCC------CCCCCCccccCCCCC
Q 032588 26 SVSS-PIKVRDLRKLIATSS--ANHLPI------ENLRLVFRG--K-------VLDDTQ------DDDDRDDVYLQLSNG 81 (137)
Q Consensus 26 ~v~~-~~TV~dLK~~Ia~~~--~~~ip~------e~qRLi~~G--k-------~L~D~~------~~d~~~L~~~~I~dg 81 (137)
.|+. +.||.+|++.+.+.. ..|++| +.+||++.. . .|++++ .+++++|.++||.++
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4776 889999988776522 345555 447777542 1 123322 145677889999888
Q ss_pred CEE-EE
Q 032588 82 DSV-IA 86 (137)
Q Consensus 82 ~tL-lv 86 (137)
..| +.
T Consensus 101 TEiSfF 106 (122)
T PF10209_consen 101 TEISFF 106 (122)
T ss_pred ceeeee
Confidence 888 44
No 116
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=69.39 E-value=26 Score=31.06 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=50.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec----CeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----GKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~----Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
|-+.+|+..|. ..+++.++.+.+-|-.+|-.....++.|++..+--+ |-+.. .+.++++.++|+++|+.|+
T Consensus 1 Mi~rfRsk~G~--~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s---~l~dqt~~dlGL~hGqmLy 75 (571)
T COG5100 1 MIFRFRSKEGQ--RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFS---LLKDQTPDDLGLRHGQMLY 75 (571)
T ss_pred CeEEEecCCCc--eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeee---cccccChhhhccccCcEEE
Confidence 44677887775 589999999999888777653345677888766432 22111 1223459999999999996
Q ss_pred EEe
Q 032588 86 AAV 88 (137)
Q Consensus 86 v~~ 88 (137)
+--
T Consensus 76 l~y 78 (571)
T COG5100 76 LEY 78 (571)
T ss_pred EEe
Confidence 543
No 117
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=69.08 E-value=31 Score=23.25 Aligned_cols=48 Identities=23% Similarity=0.408 Sum_probs=36.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-cCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-RGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~-~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
+...++..+||+++ |+ ..|+|....-+|+ .|+.-. -+|-+++||.|-|
T Consensus 25 ~~~~~~~~~tvkd~---IE---sLGVP~tEV~~i~vNG~~v~----------~~~~~~~Gd~v~V 73 (81)
T PF14451_consen 25 FTHPFDGGATVKDV---IE---SLGVPHTEVGLILVNGRPVD----------FDYRLKDGDRVAV 73 (81)
T ss_pred eEEecCCCCcHHHH---HH---HcCCChHHeEEEEECCEECC----------CcccCCCCCEEEE
Confidence 55778888999887 54 4899999988875 677664 2478999999944
No 118
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=68.43 E-value=18 Score=33.79 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=42.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~ 63 (137)
.-|+|-+......+.+.++++.|+..|++.|+. .+|+|.+.|-|+|.|....
T Consensus 314 ~vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~--~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 314 KVVHIFSMVQATSHEYYVHADNTLHSLIERISK--QTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred heeEEEeeccceEEEEecChhhhHHHHHHHHHH--hhCCCCccceeeeecCccc
Confidence 345555555655577899999999999999999 9999999999999977654
No 119
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=67.93 E-value=14 Score=24.58 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=24.6
Q ss_pred eEEEEEeCCCCCcE--EEEecCCCcHHHHHHHHHh
Q 032588 10 VEITVKTIGPAPPS--RLSVSSPIKVRDLRKLIAT 42 (137)
Q Consensus 10 m~I~VKt~~~~~~~--~l~v~~~~TV~dLK~~Ia~ 42 (137)
|.|+-|..+....+ .+.++..+||.|+-.+|+.
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~ 36 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHK 36 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHH
Confidence 56777766654323 4788999999999998875
No 120
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.87 E-value=2 Score=38.21 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=55.2
Q ss_pred eEEEEEeCCCCCc-E--EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 10 VEITVKTIGPAPP-S--RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~-~--~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
-++.|+.+...+- . .+.-.-..|-.+|...|++ +.|++-+..|.|..||+|.-.++ |.+-|++....++|
T Consensus 36 at~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iak--klgi~enhvKci~~~Kils~~kt-----laeQglk~nq~~mv 108 (568)
T KOG2561|consen 36 ATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAK--KLGIKENHVKCIINGKILSCRKT-----LAEQGLKINQELMV 108 (568)
T ss_pred cceeeEeccccccchhhhhhcccccccHHHHHHHHH--HcCCchhhhheeeccceeecccc-----hhhhhhhhhhHHHH
Confidence 3455555433331 1 1333445789999999999 99999999999999999988888 99999999988855
Q ss_pred Eec
Q 032588 87 AVK 89 (137)
Q Consensus 87 ~~~ 89 (137)
++.
T Consensus 109 ~~~ 111 (568)
T KOG2561|consen 109 AVG 111 (568)
T ss_pred Hhc
Confidence 543
No 121
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=65.72 E-value=29 Score=21.44 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=33.5
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
.++++..+|+.+|-+.+. ++ ....+.+.|.....+. -.+.-+++||.| ++
T Consensus 9 ~~~~~~~~tl~~ll~~l~------~~-~~~~v~vN~~~v~~~~------~~~~~L~~gD~vei~ 59 (65)
T PRK06944 9 TLSLPDGATVADALAAYG------AR-PPFAVAVNGDFVARTQ------HAARALAAGDRLDLV 59 (65)
T ss_pred EEECCCCCcHHHHHHhhC------CC-CCeEEEECCEEcCchh------cccccCCCCCEEEEE
Confidence 467788889999876552 22 3456678888875322 233458999999 55
No 122
>smart00455 RBD Raf-like Ras-binding domain.
Probab=64.28 E-value=27 Score=22.73 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=35.2
Q ss_pred eCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032588 16 TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (137)
Q Consensus 16 t~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G 59 (137)
.++++. ..+.+-|..|+.|+=+.+-+ +.|+.++.-.+.+.|
T Consensus 6 LP~~~~-~~V~vrpg~tl~e~L~~~~~--kr~l~~~~~~v~~~g 46 (70)
T smart00455 6 LPDNQR-TVVKVRPGKTVRDALAKALK--KRGLNPECCVVRLRG 46 (70)
T ss_pred CCCCCE-EEEEECCCCCHHHHHHHHHH--HcCCCHHHEEEEEcC
Confidence 455654 77999999999999999988 999999999888866
No 123
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=62.74 E-value=30 Score=29.39 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=39.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
..+++...||.+|-+ ..+++++..-+.+.|+.+..+. -.++-|++||.| ++
T Consensus 9 ~~el~e~~TL~dLL~------~L~i~~~~VAVeVNgeIVpr~~------w~~t~LkeGD~IEII 60 (326)
T PRK11840 9 PRQVPAGLTIAALLA------ELGLAPKKVAVERNLEIVPRSE------YGQVALEEGDELEIV 60 (326)
T ss_pred EEecCCCCcHHHHHH------HcCCCCCeEEEEECCEECCHHH------cCccccCCCCEEEEE
Confidence 356777888887743 3678899999999999997443 456679999999 65
No 124
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=59.86 E-value=23 Score=28.42 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=34.2
Q ss_pred ceEEEEEeCCCC--CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE
Q 032588 9 SVEITVKTIGPA--PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV 56 (137)
Q Consensus 9 ~m~I~VKt~~~~--~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi 56 (137)
.+.|+++-.... ..+.+.++..+|-.+|-++|++ ..++.|+..||.
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~--~l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAE--HLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHH--HHTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHH--HHCCChHHEEEE
Confidence 477777763222 3488999999999999999999 999999999996
No 125
>PF09662 Phenyl_P_gamma: Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma); InterPro: IPR014097 Members of this protein family are the gamma subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. The gamma subunit has no known homologues.
Probab=58.42 E-value=15 Score=25.21 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=35.1
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~ 63 (137)
++..+++.||+.+++. ...+-.-+|+.++. ...-.|+++++-|+-..|.
T Consensus 16 Eg~elel~VR~LnPG~-------~KY~~~~VkA~vSs--dp~~yPd~L~VRfgRGql~ 64 (84)
T PF09662_consen 16 EGKELELTVRDLNPGI-------HKYTYQWVKAEVSS--DPDKYPDKLQVRFGRGQLH 64 (84)
T ss_pred CCCEEEEEEEecCcch-------hHHHHHhhhhhhcC--CcccCChheEEecccCccC
Confidence 4677999999988765 23455788888865 6666678888777644554
No 126
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=58.29 E-value=14 Score=24.39 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 31 IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 31 ~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
.|+.+|.+..++ ++|+++.+ -+.-.|-.+.|=. =|+|||.|++
T Consensus 26 ~SleeLl~ia~~--kfg~~~~~-v~~~dgaeIdDI~----------~IRDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASE--KFGFSATK-VLNEDGAEIDDID----------VIRDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHH--HhCCCceE-EEcCCCCEEeEEE----------EEEcCCEEEE
Confidence 599999998888 99997322 2333455554311 3889999965
No 127
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=56.93 E-value=29 Score=24.03 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=38.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
...++-...+..||..++. ..++.-+.-.+.+....|..+++ |.+-+++-...|
T Consensus 6 ~q~mDI~epl~~Lk~lLe~--Rl~~~L~~~~f~LQD~~L~~~k~-----L~dQcVqgeGlV 59 (88)
T PF11620_consen 6 MQHMDIREPLSTLKKLLER--RLGISLSDYEFWLQDIQLEPHKS-----LVDQCVQGEGLV 59 (88)
T ss_dssp EEEEESSSBGGGHHHHSHH--HH-S--SS-EEEETTEE--TTSB-----TTTSS----SEE
T ss_pred EEEEecCCcHHHHHHHHHH--hhCCCcCCCeEEeccceecCCcc-----HHHhhccccCEE
Confidence 4567778889999999998 89999999888889988988888 999999888787
No 128
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=56.59 E-value=35 Score=23.48 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=29.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~ 42 (137)
++.+.|.|...+...++++.++.++|+.+|-+.+-.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~ 49 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALK 49 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHH
Confidence 456889999887777788999999999999877765
No 129
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=55.09 E-value=47 Score=25.97 Aligned_cols=38 Identities=29% Similarity=0.259 Sum_probs=23.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCC---ceEE--EecCeec
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIE---NLRL--VFRGKVL 62 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e---~qRL--i~~Gk~L 62 (137)
+.+-|+.+.||+||-+.++. +.+++.+ ..|| ++.||..
T Consensus 36 ~~~~vpk~~tV~Dll~~l~~--k~~~~~~~~~~lrl~ev~~~ki~ 78 (213)
T PF14533_consen 36 YELLVPKTGTVSDLLEELQK--KVGFSEEGTGKLRLWEVSNHKIY 78 (213)
T ss_dssp EEE--BTT-BHHHHHHHHHT--T----TT----EEEEEEETTEEE
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCCcCCcCcEEEEEeECCEEE
Confidence 55789999999999999998 8888765 4555 4667663
No 130
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=53.12 E-value=25 Score=21.92 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=35.3
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
|+|.++.|+ ..+++..+|+.|+-..|+. .. .-.-.--...|+.. .-++-|++|++| ++
T Consensus 1 I~v~lpdG~---~~~~~~g~T~~d~A~~I~~--~l--~~~~~~A~Vng~~v----------dl~~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGS---IKELPEGSTVLDVAYSIHS--SL--AKRAVAAKVNGQLV----------DLDHPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSC---EEEEETTBBHHHHHHHHSH--HH--HHCEEEEEETTEEE----------ETTSBB-SSEEEEEE
T ss_pred CEEECCCCC---eeeCCCCCCHHHHHHHHCH--HH--HhheeEEEEcCEEC----------CCCCCcCCCCEEEEE
Confidence 456666664 4679999999999998875 22 11112223456444 334578888888 54
No 131
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=53.11 E-value=62 Score=21.13 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=27.6
Q ss_pred EEecC-CCcHHHHHHHHHhccCCC-----CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 25 LSVSS-PIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 25 l~v~~-~~TV~dLK~~Ia~~~~~~-----ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
++++. .+||++|++.+.+ ... ....+.+.-..+..-. .+.-|++||.|
T Consensus 19 ~~v~~~~~tv~~l~~~L~~--~~~~~~~~~~~~~~~~aVN~~~~~----------~~~~l~dgDeV 72 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQ--KGDRWALALEDGKLLAAVNQTLVS----------FDHPLTDGDEV 72 (81)
T ss_pred EEecCCCCCHHHHHHHHHH--hCccHHhhhcCCCEEEEECCEEcC----------CCCCCCCCCEE
Confidence 44543 4799999999987 441 1122233333443221 12358999999
No 132
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=51.96 E-value=15 Score=23.51 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=30.7
Q ss_pred EeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEEe
Q 032588 15 KTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLVF 57 (137)
Q Consensus 15 Kt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip-~e~qRLi~ 57 (137)
..+.+.. ..+.+++++|+.+|=+.|+. ..++. .+-.-|.|
T Consensus 2 ~llD~~~-~~~~v~~~~t~~~l~~~v~~--~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 2 RLLDGTT-KTFEVDPKTTGQDLLEQVCD--KLGLKEKEYFGLQY 42 (80)
T ss_dssp EESSEEE-EEEEEETTSBHHHHHHHHHH--HHTTSSGGGEEEEE
T ss_pred CCcCCCc-EEEEEcCCCcHHHHHHHHHH--HcCCCCccEEEEEE
Confidence 4455654 77999999999999999998 77765 33466766
No 133
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=51.21 E-value=42 Score=22.98 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=33.7
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec
Q 032588 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR 58 (137)
Q Consensus 11 ~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~ 58 (137)
+.+++..+.. ..+.++..-|-..|+++|.. .+++|+...-+-|-
T Consensus 2 ~fKv~~~g~~--RRf~~~~~pt~~~L~~kl~~--Lf~lp~~~~~vtYi 45 (82)
T cd06397 2 QFKSSFLGDT--RRIVFPDIPTWEALASKLEN--LYNLPEIKVGVTYI 45 (82)
T ss_pred eEEEEeCCce--EEEecCCCccHHHHHHHHHH--HhCCChhHeEEEEE
Confidence 4566664443 56788888899999999998 99999887666664
No 134
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=50.22 E-value=77 Score=21.35 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=40.7
Q ss_pred eCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCCCCceEEEec-CeecCCCCCCCCCCccccCCCCCCEE
Q 032588 16 TIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-GKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 16 t~~~~~~~~-l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~-Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
+..++.++. ++|+.++-...+-+-.++ ++++|+..=-+|-. |--+.-.++ -.+.-++.|+.|
T Consensus 10 tsDp~~p~kv~sVPE~apftaVlkfaAe--eF~vp~~tsaiItndG~GInP~QT-----ag~vflKhGseL 73 (76)
T PF03671_consen 10 TSDPKLPYKVISVPEEAPFTAVLKFAAE--EFKVPPATSAIITNDGVGINPQQT-----AGNVFLKHGSEL 73 (76)
T ss_dssp STSSTS-EEEEEEETTSBHHHHHHHHHH--HTTS-SSSEEEEESSS-EE-TTSB-----HHHHHHHT-SEE
T ss_pred ccCCCCcceEEecCCCCchHHHHHHHHH--HcCCCCceEEEEecCCcccccchh-----hhhhHhhcCcEe
Confidence 456666665 699999877777777777 89999988777754 555655555 666667777776
No 135
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=49.98 E-value=78 Score=21.35 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=32.5
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCC
Q 032588 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDT 65 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~--~Gk~L~D~ 65 (137)
.+|.....+. ...|.. .|+.+|+.+..+ .++++.+..+|++ .|-...|+
T Consensus 5 ~kv~~~~r~~--k~Gv~A-~sL~eL~~K~~~--~l~~~~~~~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 5 FKVRNHDRSV--KKGVAA-SSLEELLEKACD--KLQLPEEPVRLVLEEDGTEVDDE 55 (78)
T ss_dssp EEEEETTSSC--EEEEEE-SSHHHHHHHHHH--HHT-SSSTCEEEETTTTCBESSC
T ss_pred EEEecCCCCc--eEeEEc-CCHHHHHHHHHH--HhCCCCcCcEEEEeCCCcEEccH
Confidence 3455554443 333333 589999999998 9999988888876 46666544
No 136
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=49.57 E-value=65 Score=20.91 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=26.8
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCC--CCceEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLP--IENLRLV 56 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip--~e~qRLi 56 (137)
.+|.|+.++|..++-+.+.+ ++++. ++...|+
T Consensus 15 kti~V~~~~t~~~Vi~~~l~--k~~l~~~~~~y~L~ 48 (87)
T cd01768 15 KTLRVSKDTTAQDVIQQLLK--KFGLDDDPEDYALV 48 (87)
T ss_pred EEEEECCCCCHHHHHHHHHH--HhCCcCCcccEEEE
Confidence 57999999999999999988 88877 5666664
No 137
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=48.30 E-value=55 Score=22.49 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=30.4
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 032588 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (137)
Q Consensus 11 ~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~ 52 (137)
-|+|-...++. -.|.|+..+|++++=+.++. +.++..+.
T Consensus 4 vvkv~~~Dg~s-K~l~V~~~~Ta~dV~~~L~~--K~h~~~~~ 42 (85)
T cd01787 4 VVKVYSEDGAS-KSLEVDERMTARDVCQLLVD--KNHCQDDS 42 (85)
T ss_pred EEEEEecCCCe-eEEEEcCCCcHHHHHHHHHH--HhCCCCCC
Confidence 35555566654 68999999999999999998 88876554
No 138
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=47.34 E-value=75 Score=20.42 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=26.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCC--CCCceEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHL--PIENLRLV 56 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~i--p~e~qRLi 56 (137)
.+|.|++.+|+.++-+.+.+ ++++ .+....|.
T Consensus 19 k~i~v~~~tTa~evi~~~l~--k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 19 KTIKVSSSTTAREVIEMALE--KFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEETTSBHHHHHHHHHH--HTTTSSSGGGEEEE
T ss_pred EEEEECCCCCHHHHHHHHHH--HhCCCCCCCCEEEE
Confidence 56999999999999999988 8988 45556673
No 139
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=44.93 E-value=85 Score=22.80 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=53.3
Q ss_pred CceEEEEEeCCCCCcE---EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 8 ESVEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~---~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
..|.|.+|..++..-+ ...|+++.|++-+-..|.. ..++++..|=.+|-.....-.-...=++|.++-=.+|.-|
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk--~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~~d~~Lv 106 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKK--FLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFGTDGKLV 106 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHH--HhCCcccCeEEEEEcCccCCCchhHHHHHHHhcCCCCEEE
Confidence 3589999988775422 2789999999999999988 8999999999999888775432211144555544455433
No 140
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=44.64 E-value=14 Score=22.37 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.5
Q ss_pred cchHHHHHHHhhcccccc
Q 032588 117 STSRWKRKLLLFSPQQVK 134 (137)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~ 134 (137)
+.|+|++.+..|.|||+-
T Consensus 1 ~~s~~~~~~~~f~~nk~a 18 (56)
T PF12911_consen 1 SRSPWKDAWRRFRRNKLA 18 (56)
T ss_pred CCCHHHHHHHHHHhCchH
Confidence 468999999999999863
No 141
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=43.11 E-value=73 Score=22.26 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=28.7
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~ 42 (137)
++.+.|.|...+...++++.+++++|+.+|-+.+-.
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~ 50 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFT 50 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHH
Confidence 456778888777666688999999999999876654
No 142
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=42.44 E-value=41 Score=22.79 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=37.5
Q ss_pred EEecCCCcHHHHHHHHHhccCCCC-------CCCceEEEecCe-ecCCCCCCC--CCCccccCCCCCCEEEE
Q 032588 25 LSVSSPIKVRDLRKLIATSSANHL-------PIENLRLVFRGK-VLDDTQDDD--DRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 25 l~v~~~~TV~dLK~~Ia~~~~~~i-------p~e~qRLi~~Gk-~L~D~~~~d--~~~L~~~~I~dg~tLlv 86 (137)
|++++++|+.+|-+.+.+ ...+ .-+.-.|++++- .|.. .+.. +++|.++ +.+|+.|+|
T Consensus 1 i~v~~~~TL~~lid~L~~--~~~~qlk~PSlt~~~k~LYm~~pp~Lee-~Tr~NL~k~l~eL-~~~g~ei~V 68 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCE--KPEFQLKKPSLTTANKTLYMQSPPSLEE-ATRPNLSKKLKEL-LSDGEEITV 68 (84)
T ss_dssp EEESTTSBSHHHHHHHHH--STTT--SS-EEESSEEEEEESSSHHHHH-HTGGGGSSBTTTT-HHSSEEEEE
T ss_pred CCcCccchHHHHHHHHHh--ChhhhcCCCcccCCCceEEEeCCHHHHH-HhhhhhhhhHHHH-hcCCCEEEE
Confidence 578999999999999988 5333 344455655553 1211 1101 1558888 889988876
No 143
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=41.24 E-value=26 Score=26.43 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=19.2
Q ss_pred CCCCCCccccCCCCCCEE-EEEecCC
Q 032588 67 DDDDRDDVYLQLSNGDSV-IAAVKPK 91 (137)
Q Consensus 67 ~~d~~~L~~~~I~dg~tL-lv~~~p~ 91 (137)
.+|+++|..++++-||.| +.+..|+
T Consensus 114 ~ddnktL~~~kf~iGD~lDVaI~~p~ 139 (151)
T KOG3391|consen 114 IDDNKTLQQTKFEIGDYLDVAITPPN 139 (151)
T ss_pred CCccchhhhCCccccceEEEEecCcc
Confidence 345566999999999999 6665554
No 144
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=40.98 E-value=99 Score=29.14 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=43.7
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEec
Q 032588 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAVK 89 (137)
Q Consensus 11 ~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~~~ 89 (137)
+|+|-|++|. .+.++..+|+.||--.|+. ..|...-.=+ ..|+... -++.+++||+| ++-.+
T Consensus 405 ~V~VfTPkG~---~~~Lp~gaT~lDfAy~iHt--~iG~~~~gAk--vng~~v~----------l~~~L~~GD~VeIits~ 467 (743)
T PRK10872 405 RVYVFTPKGD---VVDLPAGSTPLDFAYHIHS--DVGHRCIGAK--IGGRIVP----------FTYQLQMGDQIEIITQK 467 (743)
T ss_pred eEEEECCCCC---eEEcCCCCcHHHHHHHHhH--HHHhhceEEE--ECCEECC----------CCcCCCCCCEEEEEeCC
Confidence 5889898885 5899999999999888876 4443222222 4666553 34678999999 66543
No 145
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=40.89 E-value=27 Score=23.51 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=16.7
Q ss_pred EEEEecCCCcHHHHHHHHHh
Q 032588 23 SRLSVSSPIKVRDLRKLIAT 42 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~ 42 (137)
+.++++.++|+.++|+.+-+
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~ 21 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWE 21 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHH
Confidence 56889999999999998876
No 146
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=40.34 E-value=1.2e+02 Score=21.39 Aligned_cols=41 Identities=24% Similarity=0.163 Sum_probs=28.8
Q ss_pred EEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEE
Q 032588 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLV 56 (137)
Q Consensus 13 ~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~-e~qRLi 56 (137)
.|--..+.- .++..+.++||.||-..++. ++.++. ++-+|.
T Consensus 6 RIFr~D~Tf-~Tls~~l~tTv~eli~~L~r--K~~l~~~~ny~l~ 47 (97)
T cd01775 6 RVFRSDGTF-TTLSCPLNTTVSELIPQLAK--KFYLPSGGNYQLS 47 (97)
T ss_pred EEEecCCcE-EEEEcCCcCcHHHHHHHHHH--hhcCCCCCCeEEE
Confidence 333334432 46899999999999999988 887766 444554
No 147
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=39.18 E-value=33 Score=25.11 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=27.6
Q ss_pred EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeec
Q 032588 26 SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62 (137)
Q Consensus 26 ~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L 62 (137)
-|+.+.||++|...|.. ..+++++.. .+|-+..+
T Consensus 46 lVP~d~tV~qF~~iIRk--rl~l~~~k~-flfVnn~l 79 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQ--ALGTSAKKV-TLAIEGST 79 (121)
T ss_pred EcCCCCcHHHHHHHHHH--HcCCChhHE-EEEECCcc
Confidence 69999999999999988 889999984 44544444
No 148
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=38.73 E-value=59 Score=22.27 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=30.1
Q ss_pred EEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEe
Q 032588 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVF 57 (137)
Q Consensus 13 ~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~-qRLi~ 57 (137)
++|..-++..+...++++.|..+|.+++.+ .+..+.++ ..+-|
T Consensus 2 ~~K~~y~gdi~it~~d~~~s~e~L~~~v~~--~c~~~~~q~ft~kw 45 (83)
T cd06404 2 RVKAAYNGDIMITSIDPSISLEELCNEVRD--MCRFHNDQPFTLKW 45 (83)
T ss_pred eEEEEecCcEEEEEcCCCcCHHHHHHHHHH--HhCCCCCCcEEEEE
Confidence 445443444366799999999999999998 77776553 44443
No 149
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=38.55 E-value=61 Score=22.40 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=27.8
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLV 56 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip-~e~qRLi 56 (137)
-++-|.|.+|+.+|=..+|+ ++++. |+...|.
T Consensus 16 KTL~V~P~~tt~~vc~lcA~--Kf~V~qPe~y~LF 48 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAE--KFKVTQPEEYSLF 48 (87)
T ss_pred eeeecCCCCcHHHHHHHHHH--HhccCChhheeEE
Confidence 46899999999999999999 98875 7887775
No 150
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=37.16 E-value=52 Score=22.41 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=33.0
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceE-EEecCeecC
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLR-LVFRGKVLD 63 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qR-Li~~Gk~L~ 63 (137)
+.+.|++.+|=.++|+.|+. .+|+++...+ +++.|+.--
T Consensus 23 ~tF~V~~~atK~~Ik~aie~--iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEK--IYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHH--HHTSEEEEEEEEEETSEEEE
T ss_pred EEEEEeCCCCHHHHHHHHHh--hcCCCeeEEEEeEeCCCceE
Confidence 67899999999999999999 8999998855 467787653
No 151
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=37.11 E-value=1.1e+02 Score=28.30 Aligned_cols=63 Identities=25% Similarity=0.199 Sum_probs=43.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~~ 88 (137)
=+|+|-|+.|. .+.++..+|+.||--.|+. ..|.-.-.=+ ..|+.. -.++.+++||+| ++-.
T Consensus 360 ~~i~vfTPkG~---~~~lp~gst~~DfAy~ih~--~~g~~~~~a~--vng~~v----------~l~~~l~~gd~vei~t~ 422 (683)
T TIGR00691 360 EEIYVFTPKGD---VVELPSGSTPVDFAYAVHT--DVGNKCTGAK--VNGKIV----------PLDKELENGDVVEIITG 422 (683)
T ss_pred CceEEECCCCe---EEEcCCCCCHHHHHHHHhH--HhHhceeEEE--ECCEEC----------CCCccCCCCCEEEEEeC
Confidence 46788888884 5899999999999888876 4443332222 456654 234678999999 6544
Q ss_pred c
Q 032588 89 K 89 (137)
Q Consensus 89 ~ 89 (137)
+
T Consensus 423 ~ 423 (683)
T TIGR00691 423 K 423 (683)
T ss_pred C
Confidence 3
No 152
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=37.03 E-value=1.3e+02 Score=20.32 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=35.8
Q ss_pred eEEEEEeCCCCCcEE---EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032588 10 VEITVKTIGPAPPSR---LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV 61 (137)
Q Consensus 10 m~I~VKt~~~~~~~~---l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~ 61 (137)
|+|.+|..+.-..+. .-|+.+.|++++...|.. ..++.++.-=.+|-+..
T Consensus 2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk--~L~l~~~~slflyvnn~ 54 (87)
T cd01612 2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRK--RLKLKASDSLFLYINNS 54 (87)
T ss_pred eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHH--HhCCCccCeEEEEECCc
Confidence 678888877654332 679999999999999988 77776665333444544
No 153
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=36.46 E-value=1.2e+02 Score=20.20 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=34.5
Q ss_pred CCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032588 17 IGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV 61 (137)
Q Consensus 17 ~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~ 61 (137)
++|+. ..+.+-+..||.|+=.++-+ +.|+.++---+...|+.
T Consensus 7 Pdg~~-T~V~vrpG~ti~d~L~klle--kRgl~~~~~~vf~~g~~ 48 (73)
T cd01817 7 PDGST-TVVPTRPGESIRDLLSGLCE--KRGINYAAVDLFLVGGD 48 (73)
T ss_pred CCCCe-EEEEecCCCCHHHHHHHHHH--HcCCChhHEEEEEecCC
Confidence 45554 56899999999999999988 99999999888776653
No 154
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=36.31 E-value=97 Score=27.66 Aligned_cols=82 Identities=12% Similarity=0.202 Sum_probs=60.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRL--i~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
....|.|+-++|+. +.=.++.++-+..++.-|.. ..++.....-| .|--+...++.. +++|.++.|-+...|+
T Consensus 313 d~~rLqiRLPdGss-fte~Fps~~vL~~vr~yvrq--~~~i~~g~f~LatpyPRReft~eDy--~KtllEl~L~psaalv 387 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSS-FTEKFPSTSVLRMVRDYVRQ--NQTIGLGAFDLATPYPRREFTDEDY--DKTLLELRLFPSAALV 387 (506)
T ss_pred ceeEEEEecCCccc-hhhcCCcchHHHHHHHHHHh--cccccccceeeccccccccccchhh--hhhHHHhccCCcceEE
Confidence 34789999999976 77788888888889988887 66666665444 466666654432 3679999999998887
Q ss_pred EEecCCCCC
Q 032588 86 AAVKPKPPP 94 (137)
Q Consensus 86 v~~~p~~~~ 94 (137)
|+.+..+..
T Consensus 388 vlpk~r~t~ 396 (506)
T KOG2507|consen 388 VLPKKRATV 396 (506)
T ss_pred EEecCCcce
Confidence 776655543
No 155
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=36.19 E-value=33 Score=23.17 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=17.8
Q ss_pred EEEEecCCCcHHHHHHHHHh
Q 032588 23 SRLSVSSPIKVRDLRKLIAT 42 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~ 42 (137)
+.+.++.++|+.++|+.+-+
T Consensus 2 i~l~v~~~aTl~~IK~~lw~ 21 (78)
T smart00143 2 VTLRVLREATLSTIKHELFK 21 (78)
T ss_pred eeEEccccccHHHHHHHHHH
Confidence 56889999999999999886
No 156
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=35.57 E-value=59 Score=22.98 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=23.6
Q ss_pred EEEecCeecCCCCCCCCCCccccCCCCC-CEEEEEecCC
Q 032588 54 RLVFRGKVLDDTQDDDDRDDVYLQLSNG-DSVIAAVKPK 91 (137)
Q Consensus 54 RLi~~Gk~L~D~~~~d~~~L~~~~I~dg-~tLlv~~~p~ 91 (137)
.|-|.||.|..+.+ |++|-=+|. .+|+|+..++
T Consensus 3 ~LW~aGK~l~~~k~-----l~dy~GkNEKtKiivKl~~~ 36 (98)
T PF11069_consen 3 QLWWAGKELQRGKK-----LSDYIGKNEKTKIIVKLQKR 36 (98)
T ss_pred eEEeccccccCCCc-----HHHhcCCCcceeEEEEeccC
Confidence 46799999988888 988843343 3557777654
No 157
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=34.57 E-value=1.5e+02 Score=20.21 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCCc--EEEEecCCCcHHHHHHH---HHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 10 VEITVKTIGPAPP--SRLSVSSPIKVRDLRKL---IATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 10 m~I~VKt~~~~~~--~~l~v~~~~TV~dLK~~---Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
|+|.|-...+... ..++|+..+||.+-=+. .+. ...+..+..++=.-||...- +.-+++||-|
T Consensus 1 i~VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~--~p~idl~~~~vGIfGk~~~~----------d~~L~~GDRV 68 (84)
T PF03658_consen 1 IRVEVAYALPERQVILTLEVPEGTTVAQAIEASGILEQ--FPEIDLEKNKVGIFGKLVKL----------DTVLRDGDRV 68 (84)
T ss_dssp EEEEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHHHH---TT--TTTSEEEEEE-S--T----------T-B--TT-EE
T ss_pred CEEEEEEECCCeEEEEEEECCCcCcHHHHHHHcCchhh--CcccCcccceeeeeeeEcCC----------CCcCCCCCEE
Confidence 4555654444332 35899999999876442 222 34577788888444555542 2357899999
Q ss_pred -EEE
Q 032588 85 -IAA 87 (137)
Q Consensus 85 -lv~ 87 (137)
+..
T Consensus 69 EIYR 72 (84)
T PF03658_consen 69 EIYR 72 (84)
T ss_dssp EEE-
T ss_pred EEec
Confidence 763
No 158
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=33.78 E-value=1.4e+02 Score=19.50 Aligned_cols=32 Identities=34% Similarity=0.346 Sum_probs=26.3
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLV 56 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~--e~qRLi 56 (137)
.+|.|++++|+.++=..+.+ +++++. +.-.|+
T Consensus 18 kti~v~~~tTa~~Vi~~~l~--k~~l~~~~~~y~L~ 51 (90)
T smart00314 18 KTLRVSSRTTARDVIQQLLE--KFHLTDDPEEYVLV 51 (90)
T ss_pred EEEEECCCCCHHHHHHHHHH--HhCCCCCcccEEEE
Confidence 57999999999999999988 888874 455554
No 159
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=33.71 E-value=1.4e+02 Score=19.75 Aligned_cols=38 Identities=16% Similarity=-0.006 Sum_probs=25.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccCC-CCCCCceEEEecCeecCC
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSAN-HLPIENLRLVFRGKVLDD 64 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~-~ip~e~qRLi~~Gk~L~D 64 (137)
+-.-..++.|+++|+..|.+ ++ .++|....+. -..|+|
T Consensus 5 FLhlt~~~~tl~~L~~eI~~--~f~kLYP~~~~~~--I~~LQD 43 (73)
T PF10407_consen 5 FLHLTDPNNTLSQLKEEIEE--RFKKLYPNEPELE--ILSLQD 43 (73)
T ss_pred EEEEeCCCCcHHHHHHHHHH--HHHHHCCCCCCce--EEEeec
Confidence 44456788999999999987 55 4666665443 234544
No 160
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=32.05 E-value=1.2e+02 Score=20.71 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=32.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEE-EecCeec
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRL-VFRGKVL 62 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRL-i~~Gk~L 62 (137)
+.+.|++.+|=.|+|+.|+. .+++++..-+- ++.|+.-
T Consensus 23 ~~F~V~~~a~K~eIK~aie~--lf~VkV~~VnT~~~~gk~k 61 (92)
T PRK05738 23 YVFEVAPDATKPEIKAAVEK--LFGVKVESVNTLNVKGKTK 61 (92)
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCceeEEEEEEeCCcee
Confidence 78999999999999999999 99999888544 5667664
No 161
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=32.04 E-value=1.1e+02 Score=20.96 Aligned_cols=55 Identities=27% Similarity=0.247 Sum_probs=29.6
Q ss_pred EecCCCcHHHHHHHHHhccCCCCCCCceEEEecC-------eecCCCCCCCCCCc--cccCCCCCCEEEE
Q 032588 26 SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG-------KVLDDTQDDDDRDD--VYLQLSNGDSVIA 86 (137)
Q Consensus 26 ~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G-------k~L~D~~~~d~~~L--~~~~I~dg~tLlv 86 (137)
.+...+||++|=+.+++ .. +..+.+++..+ -+|-++.. -..+ .++-+++||.|.+
T Consensus 24 ~~~~~~tV~dll~~L~~--~~--~~~~~~lf~~~g~lr~~i~VlvN~~d--i~~l~g~~t~L~dgD~v~i 87 (94)
T cd01764 24 DGEKPVTVGDLLDYVAS--NL--LEERPDLFIEGGSVRPGIIVLINDTD--WELLGEEDYILEDGDHVVF 87 (94)
T ss_pred cCCCCCcHHHHHHHHHH--hC--chhhhhhEecCCcccCCEEEEECCcc--ccccCCcccCCCCcCEEEE
Confidence 33356799999988876 33 44444444322 11222211 0112 3567999999943
No 162
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=31.40 E-value=34 Score=21.85 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.0
Q ss_pred ccCCcccccccccCCcchHHHHHHHhhccccccc
Q 032588 102 CIDDDDLDLKFKLPQSTSRWKRKLLLFSPQQVKA 135 (137)
Q Consensus 102 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~ 135 (137)
.+|.+.+++-| |.+.+.=.|++++-|-++|-|
T Consensus 12 kdd~~~~eL~F--p~~ls~~eRriih~la~~lGL 43 (60)
T cd02639 12 KDDRMRDELAF--PSSLSPAERRIVHLLASRLGL 43 (60)
T ss_pred ecCCCceEEEc--CCCCCHHHHHHHHHHHHHcCC
Confidence 34444666777 999999999999999888765
No 163
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=31.20 E-value=35 Score=26.64 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=23.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCc-----eEEEecCe
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIEN-----LRLVFRGK 60 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~-----qRLi~~Gk 60 (137)
+.+.|.+..|+.++|+.|++ ++|++-.. .-++..++
T Consensus 135 F~f~v~~gE~f~~tK~Rl~~--rlgv~~keF~K~Kfaiv~~~~ 175 (213)
T PF14533_consen 135 FLFVVKPGETFSDTKERLQK--RLGVSDKEFEKWKFAIVQNSR 175 (213)
T ss_dssp EEEEEETT--HHHHHHHHHH--HH---HHHHTT-EEEEEETTE
T ss_pred EEEEeeCCCcHHHHHHHHHH--HhCCChhhheeEEEEEEecCC
Confidence 45788999999999999999 99987544 44455554
No 164
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=31.17 E-value=90 Score=27.36 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=50.4
Q ss_pred CCCCCceEEEEEeCCCCCcE---EEEecCCCcHHHHHHHHHhccCC--C-CCCCceEEEecCeecCCCCCCCCCCccccC
Q 032588 4 GEISESVEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSAN--H-LPIENLRLVFRGKVLDDTQDDDDRDDVYLQ 77 (137)
Q Consensus 4 ~~~~~~m~I~VKt~~~~~~~---~l~v~~~~TV~dLK~~Ia~~~~~--~-ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~ 77 (137)
.+.++.++|++.|....... .+.+|.+.+..+|-+.+....+. | --+...-+...|..|.-... .-|..+|
T Consensus 2 s~~~~qvqvrF~Tk~e~~aVpD~p~~iP~~~~r~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~---e~l~~kg 78 (423)
T KOG0313|consen 2 SINSGQVQVRFFTKNEDYAVPDVPFAIPTSVERYGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLD---EHLEEKG 78 (423)
T ss_pred CCCcceEEEEEEecccccCCCCcceeccCcceEccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHH---HHHHHcC
Confidence 34567799999987665422 25666666655555444431112 2 34666777778888753221 2377889
Q ss_pred CCCCCEE-EEEec
Q 032588 78 LSNGDSV-IAAVK 89 (137)
Q Consensus 78 I~dg~tL-lv~~~ 89 (137)
|....+| +-.+.
T Consensus 79 iSsE~~leIEYv~ 91 (423)
T KOG0313|consen 79 ISSEEILEIEYVE 91 (423)
T ss_pred cChhheeEEEEEE
Confidence 9999998 54444
No 165
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.70 E-value=2.1e+02 Score=24.04 Aligned_cols=74 Identities=7% Similarity=0.074 Sum_probs=50.4
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
.+-.|.||...|+. +..++++..|+..++.-|.. ..+..+.-..|. |--+.+.++. -.+.|..+++-+-..|+
T Consensus 209 s~crlQiRl~DG~T-l~~tF~a~E~L~~VR~wVd~--n~~~~~~P~~f~t~fPR~tf~edD--~~KpLq~L~L~Psa~li 283 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQT-LTQTFNARETLAAVRLWVDL--NRGDGLDPYSFHTGFPRVTFTEDD--ELKPLQELDLVPSAVLI 283 (290)
T ss_pred cceEEEEEcCCCCe-eeeecCchhhHHHHHHHHHH--hccCCCCCeeeecCCCceeccccc--ccccHHHhccccchhee
Confidence 45678889888866 88899999999999999987 666544333321 2223332211 12569999998877775
Q ss_pred E
Q 032588 86 A 86 (137)
Q Consensus 86 v 86 (137)
+
T Consensus 284 l 284 (290)
T KOG2689|consen 284 L 284 (290)
T ss_pred c
Confidence 4
No 166
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=1.2e+02 Score=27.74 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=36.6
Q ss_pred EEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCC--CCCCCccccCCCCCCEEEEE
Q 032588 23 SRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQD--DDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 23 ~~l~v~~-~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~--~d~~~L~~~~I~dg~tLlv~ 87 (137)
..+.++. ..|+.+|-..|-. .+.++.|+- .|.+ .+.+.|... ..+++|+++||.+|+.+.+.
T Consensus 445 ~~l~ln~~~~~~~~L~D~ivk-~r~~~~pdv-sll~-~~Li~~~d~e~n~~k~lsel~i~ngsli~~~ 509 (603)
T KOG2013|consen 445 LVLELNTRKSTLRDLVDKIVK-TRLGYLPDV-SLLD-DDLIDDMDFEDNLDKTLSELGILNGSLINVK 509 (603)
T ss_pred eEEEeccccchHHHHHHHHHH-HHhccCccc-chhh-hhhcccccchhhhhhhHHhhCCCCCceEeee
Confidence 3456664 3789999888774 355665533 2222 222222221 12377999999999966544
No 167
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=28.26 E-value=1.1e+02 Score=21.04 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=34.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLR 54 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qR 54 (137)
++|.|--++|.. +.|++..+.+..++=+.++. +.|+|.+..+
T Consensus 2 V~L~V~Lpdg~~-i~V~v~~s~~a~~Vleav~~--kl~L~~e~~~ 43 (87)
T cd01777 2 VELRIALPDKAT-VTVRVRKNATTDQVYQALVA--KAGMDSYTQN 43 (87)
T ss_pred eEEEEEccCCCE-EEEEEEEcccHHHHHHHHHH--HhCCCHHHHh
Confidence 456666677765 88999999999999999988 9999988744
No 168
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=27.66 E-value=30 Score=29.06 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=35.2
Q ss_pred EEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC
Q 032588 23 SRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT 65 (137)
Q Consensus 23 ~~l~v~-~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~ 65 (137)
+.+.+. .+..+..||.+++. ..+++++-|++.+.|.-|+|.
T Consensus 295 ~~~~~~~~~~~~~~~k~k~~~--~~~i~~~~q~~~~~~~~l~d~ 336 (341)
T KOG0007|consen 295 IKITVQSLSENVASLKEKIAD--ESQIPANKQKLRGEGAFLKDN 336 (341)
T ss_pred eeecccccccccccccccccc--ccccchhheeeccCCcccCcc
Confidence 445555 56779999999998 999999999999999999986
No 169
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=27.09 E-value=2e+02 Score=19.24 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=28.8
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCC
Q 032588 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQ 66 (137)
Q Consensus 25 l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~--~Gk~L~D~~ 66 (137)
..|... |..+|+.+..+ +++++....+|.+ .|-...|+.
T Consensus 14 ~GV~A~-sL~eL~~K~~~--~l~l~~~~~~l~L~eDGT~VddEe 54 (74)
T smart00266 14 KGVAAS-SLEELLSKVCD--KLALPDSPVTLVLEEDGTIVDDEE 54 (74)
T ss_pred EEEEcC-CHHHHHHHHHH--HhCCCCCCcEEEEecCCcEEccHH
Confidence 344443 89999999998 9999976767654 588886554
No 170
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=26.84 E-value=82 Score=27.13 Aligned_cols=70 Identities=17% Similarity=0.087 Sum_probs=51.5
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC---eecCCCCCCCCCCccccCCCCCCEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G---k~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
-.|.||.++|.+ ....+-.+.+|.-|-..++. ..-|.+-.+.+|+..- |.|..+. +-++.++||.|-.++
T Consensus 278 t~i~vR~pdG~R-~qrkf~~sepv~ll~~~~~s-~~dg~~k~~FkLv~a~P~~k~l~~~~---daT~~eaGL~nS~~~ 350 (356)
T KOG1364|consen 278 TSIQVRFPDGRR-KQRKFLKSEPVQLLWSFCYS-HMDGSDKKRFKLVQAIPASKTLDYGA---DATFKEAGLANSETL 350 (356)
T ss_pred eEEEEecCCccH-HHHhhccccHHHHHHHHHHH-hhcccccccceeeecccchhhhhccc---cchHHHhccCccccc
Confidence 349999999876 44566778899888877774 3567888899999876 4453322 367999999987654
No 171
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=26.51 E-value=99 Score=23.12 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=26.0
Q ss_pred ceEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 032588 9 SVEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (137)
Q Consensus 9 ~m~I~VKt~~~~~~--~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~ 52 (137)
..+|+|+-.+.+.+ ..|.|+.+.|+.+|=..|.. .++..-..
T Consensus 4 ~y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~--afgw~~~H 47 (179)
T PF07929_consen 4 VYQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQA--AFGWDDDH 47 (179)
T ss_dssp EEEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHH--HTT----S
T ss_pred EEEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHH--HhCcCCCE
Confidence 34555654443333 45999999999999999987 77766554
No 172
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=26.15 E-value=1.1e+02 Score=21.55 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=25.4
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEecCeecC
Q 032588 25 LSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRGKVLD 63 (137)
Q Consensus 25 l~v~~~~TV~dLK~~Ia~~~~~~ip~e~-qRLi~~Gk~L~ 63 (137)
+-|+.+.||++|...|.. ..+++++. +=|..++....
T Consensus 37 fLvp~~~tv~qf~~~ir~--rl~l~~~~alfl~Vn~~lp~ 74 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRK--RLQLSPEQALFLFVNNTLPS 74 (104)
T ss_dssp EEEETTSBHHHHHHHHHH--HTT--TTS-EEEEBTTBESS
T ss_pred EEEcCCCchhhHHHHhhh--hhcCCCCceEEEEEcCcccc
Confidence 458899999999999988 78887775 44444553333
No 173
>COG1153 FwdD Formylmethanofuran dehydrogenase subunit D [Energy production and conversion]
Probab=25.54 E-value=30 Score=25.48 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=14.0
Q ss_pred CCccccCCCCCCEEEEEe
Q 032588 71 RDDVYLQLSNGDSVIAAV 88 (137)
Q Consensus 71 ~~L~~~~I~dg~tLlv~~ 88 (137)
.++..+|++.||.|.|.+
T Consensus 38 ~D~~~Lgv~EGD~VkVks 55 (128)
T COG1153 38 EDMKQLGVSEGDKVKVKS 55 (128)
T ss_pred HHHHHhCCCcCCeEEEEe
Confidence 347788999999986665
No 174
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=24.91 E-value=1e+02 Score=20.45 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=25.7
Q ss_pred CCcHHHHHHHHHhccCCCCCCCc---eEEE--ecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 30 PIKVRDLRKLIATSSANHLPIEN---LRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 30 ~~TV~dLK~~Ia~~~~~~ip~e~---qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
..||++|.+.+.+ ........ ++++ .....+.+ .++.|++||.|.+
T Consensus 27 ~~tv~~L~~~l~~--~~~~~~~~~~~~~~v~~~~~~~~~~---------~~t~L~dGDeVa~ 77 (84)
T COG1977 27 GATVGELEELLPK--EGERWLLALEDNIVVNAANNEFLVG---------LDTPLKDGDEVAF 77 (84)
T ss_pred HHHHHHHHHHHHh--hhhhHHhccCccceEEeeeceeecc---------ccccCCCCCEEEE
Confidence 4789999999865 44311111 2211 11233333 3348999999943
No 175
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.74 E-value=4.1e+02 Score=22.84 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=36.0
Q ss_pred CceEEEEEeCCCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032588 8 ESVEITVKTIGPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~-~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~ 63 (137)
+.|--.+|+.... ..|.++. ..+|-|||..|-...+.|---+-+=|+|.|..-+
T Consensus 3 svI~YrFkSqkn~--SRI~FdGTGl~vfdlKrEII~q~Klg~g~DFdLl~yn~~tnE 57 (427)
T COG5222 3 SVINYRFKSQKNF--SRISFDGTGLPVFDLKREIINQRKLGSGKDFDLLFYNGETNE 57 (427)
T ss_pred ceeEEEeeccCCc--ceeEeccCCccHHHHHHHHHHhhhccCCccceEEEecCCccc
Confidence 4455555654443 4566665 4899999988776445555567788899986654
No 176
>PF09014 Sushi_2: Beta-2-glycoprotein-1 fifth domain; InterPro: IPR015104 The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies []. ; PDB: 1C1Z_A 3OP8_B 2KRI_A 1QUB_A 1G4G_A 1G4F_A.
Probab=24.11 E-value=35 Score=23.55 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=22.7
Q ss_pred CCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 45 ANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 45 ~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
...+|+.+=|++|+|+.+.- .++...+|..|++|
T Consensus 3 ~C~i~vkra~Vly~g~k~~i------~d~~~~~v~Hge~V 36 (85)
T PF09014_consen 3 PCKIPVKRARVLYNGEKVWI------QDLFKNGVLHGEIV 36 (85)
T ss_dssp EB--SSSS-EEEETTEEEEH------HHHTTT-BETT-EE
T ss_pred ccccceeEEEEEECCEEech------hhcccCceeeCCEE
Confidence 46789999999999998742 11556689999999
No 177
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=23.68 E-value=2.4e+02 Score=19.10 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=42.7
Q ss_pred CCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCCCCceEEEec-CeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 17 IGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-GKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 17 ~~~~~~~~-l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~-Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
...+.++. ++|+..+-...+-+-.++ .+++|+..--+|-. |--+.-.++ -..+-++.|+.| ++
T Consensus 11 Sdp~lpfkvlsVpE~aPftAvlkfaAE--eFkv~~~TsAiiTndGvGINP~qt-----AGnvflkhgselrli 76 (82)
T cd01766 11 SDPKLPFKVLSVPESTPFTAVLKFAAE--EFKVPAATSAIITNDGIGINPAQT-----AGNVFLKHGSELRLI 76 (82)
T ss_pred CCCCCcceEEeccccCchHHHHHHHHH--hcCCCccceeEEecCccccChhhc-----ccceeeecCCEeeec
Confidence 34555565 688888777666666777 89999888777755 444544444 666667788777 54
No 178
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=23.66 E-value=2.3e+02 Score=26.64 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=46.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~~ 88 (137)
-+|+|-|+.|. .+++|..+|--||-=.|+. .-|--.---|+ .|+... -++.+++||+| ++-+
T Consensus 387 d~VyvfTPkG~---vi~LP~GatplDFAY~vHt--~iG~~c~gAkV--nG~ivp----------l~~~Lk~Gd~VEIit~ 449 (701)
T COG0317 387 DRVYVFTPKGK---VIDLPKGATPLDFAYAVHT--DIGHRCIGAKV--NGRIVP----------LTTKLQTGDQVEIITS 449 (701)
T ss_pred ceEEEECCCCC---EEeCCCCCcchhhhhhhhc--hhcceeeEEEE--CCEEec----------cceecCCCCEEEEEeC
Confidence 46888888884 5899999999999877776 55544333333 676663 24689999999 7766
Q ss_pred cCC
Q 032588 89 KPK 91 (137)
Q Consensus 89 ~p~ 91 (137)
+..
T Consensus 450 k~~ 452 (701)
T COG0317 450 KHA 452 (701)
T ss_pred CCC
Confidence 543
No 179
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=23.60 E-value=2.4e+02 Score=26.30 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=43.0
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032588 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 11 ~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~~ 88 (137)
+|+|-|+.|. .+++|..+|+-||-=.|+. .-|.-.-.=|+ .|+.-. -++.+++||+| ++-.
T Consensus 387 ~v~VfTP~G~---v~~LP~GaT~lDFAY~iHt--~iG~~c~gAkV--Ng~~vp----------L~~~L~~Gd~VeIiT~ 448 (702)
T PRK11092 387 EIYVFTPEGR---IVELPAGATPVDFAYAVHT--DIGHACVGARV--DRQPYP----------LSQPLTSGQTVEIITA 448 (702)
T ss_pred eEEEECCCCC---EEeCCCCCchhhhhHhhCc--hhhceeEEEEE--CCEECC----------CCccCCCCCEEEEEeC
Confidence 5888898885 5799999999999877776 55544333332 565542 24689999999 6544
No 180
>PRK10113 cell division modulator; Provisional
Probab=23.03 E-value=40 Score=22.53 Aligned_cols=15 Identities=33% Similarity=0.975 Sum_probs=12.8
Q ss_pred ccccCCcchHHHHHH
Q 032588 111 KFKLPQSTSRWKRKL 125 (137)
Q Consensus 111 ~~~lp~~~~~~~~~~ 125 (137)
-|-+|++|.||-.++
T Consensus 58 aFs~PEsAQRWAnQi 72 (80)
T PRK10113 58 AFSVPESAQRWANQI 72 (80)
T ss_pred ccCCcHHHHHHHHHh
Confidence 478999999998765
No 181
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=22.91 E-value=2.3e+02 Score=20.47 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=31.6
Q ss_pred CceEEEEEeCCCCCcE-EEEecCCCcHHHHHHHHHhccCCCCC
Q 032588 8 ESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIATSSANHLP 49 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~-~l~v~~~~TV~dLK~~Ia~~~~~~ip 49 (137)
+.|..++...+++-.. .|.|++++|+.++-+.+-+ ++.+.
T Consensus 22 gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLe--KFk~d 62 (112)
T cd01782 22 GVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSE--KFRPD 62 (112)
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHH--Hhccc
Confidence 5588888887765422 4899999999999999887 88744
No 182
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=22.89 E-value=2.5e+02 Score=18.97 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHhccCCCCCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032588 31 IKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (137)
Q Consensus 31 ~TV~dLK~~Ia~~~~~~ip~e~qRL--i~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~ 88 (137)
.|..||+.+..+ ..+++.+..+| .-.|-.+++++- .. -+.++..++++.
T Consensus 21 ~sL~EL~~K~~~--~l~~~~~~~~lvL~eDGT~Vd~Eey-----F~--~LpdnT~lm~L~ 71 (78)
T cd06539 21 SSLQELISKTLD--ALVITSGLVTLVLEEDGTVVDTEEF-----FQ--TLGDNTHFMVLE 71 (78)
T ss_pred cCHHHHHHHHHH--HhCCCCCCcEEEEeCCCCEEccHHH-----Hh--hCCCCCEEEEEC
Confidence 489999999998 89988665555 445777765443 21 354555555443
No 183
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=22.82 E-value=2.5e+02 Score=18.91 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=28.5
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCC
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQ 66 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~--~Gk~L~D~~ 66 (137)
..-|... |..+|+.+..+ +++++....+|++ .|-...|++
T Consensus 15 k~GV~A~-sL~eL~~K~~~--~l~l~~~~~~lvL~eDGTeVddEe 56 (78)
T cd01615 15 KKGVAAS-SLEELLSKACE--KLKLPSAPVTLVLEEDGTEVDDEE 56 (78)
T ss_pred eEEEEcC-CHHHHHHHHHH--HcCCCCCCeEEEEeCCCcEEccHH
Confidence 3344443 89999999998 9999766666654 577776544
No 184
>TIGR02725 phenyl_P_gamma phenylphosphate carboxylase, gamma subunit. Members of this protein family are the gamma subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. The gamma subunit has no known homologs.
Probab=21.63 E-value=83 Score=20.97 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=31.3
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeec
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L 62 (137)
+++..++.|++.++.- ..-|-..+|..+.. ...--|++...-|+-..|
T Consensus 16 egk~lelsvrtlnpgl-------kkytyqrv~ae~s~--aldkfpdqlqvr~grgql 63 (84)
T TIGR02725 16 EGKELELSVRTLNPGL-------KKYTYQRVKAELSN--ALDKFPDQLQVRFGRGQL 63 (84)
T ss_pred CCceEEEEEeecCccH-------HHHHHHHHHHHhhh--hhhhCcHhheeeeccCcc
Confidence 3456888888876653 34577888888876 665556666665554444
No 185
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=21.57 E-value=2.3e+02 Score=18.16 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=29.2
Q ss_pred CCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032588 17 IGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (137)
Q Consensus 17 ~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G 59 (137)
++++. ..+.+-+..||.|+=..+-+ +.++.++.--+...|
T Consensus 8 P~~q~-t~V~vrpg~ti~d~L~~~~~--kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 8 PNGQR-TVVQVRPGMTIRDALSKACK--KRGLNPECCDVRLVG 47 (71)
T ss_dssp TTTEE-EEEEE-TTSBHHHHHHHHHH--TTT--CCCEEEEEEE
T ss_pred CCCCE-EEEEEcCCCCHHHHHHHHHH--HcCCCHHHEEEEEcC
Confidence 55544 66899999999999999988 999999986665443
No 186
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=21.13 E-value=1.1e+02 Score=16.97 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=13.8
Q ss_pred CCcHHHHHHHHHhccCCCCCCC
Q 032588 30 PIKVRDLRKLIATSSANHLPIE 51 (137)
Q Consensus 30 ~~TV~dLK~~Ia~~~~~~ip~e 51 (137)
..||.+||+.+.. .|++..
T Consensus 3 ~l~v~eLk~~l~~---~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKE---RGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHH---TTS-ST
T ss_pred cCcHHHHHHHHHH---CCCCCC
Confidence 5789999998765 777654
No 187
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=20.54 E-value=62 Score=27.68 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=48.8
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHH---HHHHHHHhccCCCCCCCce--EEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVR---DLRKLIATSSANHLPIENL--RLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~---dLK~~Ia~~~~~~ip~e~q--RLi~~Gk~L~D~~~~d~~~L~~~~I~dg~t 83 (137)
++.|.+.+..- .+.+.+.+-.+.+ +++...-+ ..++....+ +++|.++.+.|... .+...+.++-+.
T Consensus 61 ~~~v~~~~~~~--~~~~~i~p~~~~g~~~d~a~~~~~--~ag~sh~d~~~k~~y~~~e~rd~~l----~l~~~g~p~~sk 132 (344)
T KOG4361|consen 61 GIRVQIEYGQL--GHGLAIVPQYPSGNALDLAKPLTE--DAGLSHYDQEVKLVYVDKELRDQSL----RLSSAGVPDASK 132 (344)
T ss_pred Cccceeeeccc--ccccccccccccccchhhhccccc--ccceeecccccccceeccccccccc----ccccccCccccc
Confidence 45555555322 2445555555544 78777766 777777776 99999999987665 488889998888
Q ss_pred EEEE
Q 032588 84 VIAA 87 (137)
Q Consensus 84 Llv~ 87 (137)
+.+.
T Consensus 133 ~~~~ 136 (344)
T KOG4361|consen 133 INVV 136 (344)
T ss_pred ceec
Confidence 8443
No 188
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=20.47 E-value=2.7e+02 Score=18.45 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=30.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL 55 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRL 55 (137)
..++|+|.+..+.- +-=....++.+|++.++. .++++..+..+
T Consensus 30 ~~i~I~I~tarPg~---vIG~~G~~i~~L~~~L~k--~~~~~~~~i~v 72 (81)
T cd02413 30 TRTEIIIRATRTQN---VLGEKGRRIRELTSLVQK--RFNFPEGSVEL 72 (81)
T ss_pred CeEEEEEEeCCCce---EECCCchhHHHHHHHHHH--HhCCCCCeEEE
Confidence 34677777755532 222345789999999998 89998777665
No 189
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=20.26 E-value=2.7e+02 Score=18.43 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=39.8
Q ss_pred EEEEecCCCcHHHHHH-HHHhccCCCCCCCceEEE-ecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 23 SRLSVSSPIKVRDLRK-LIATSSANHLPIENLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~-~Ia~~~~~~ip~e~qRLi-~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
..++.++..-+--..+ .+.++-..+-|+++--|- -.|..|.-++. +++||+.+|-+|++
T Consensus 8 v~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kK-----veD~GftngvkLFL 68 (76)
T PF10790_consen 8 VQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKK-----VEDFGFTNGVKLFL 68 (76)
T ss_pred eeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccch-----hhhccccccceEEE
Confidence 5677776655444443 344433456888886664 45777766555 99999999999944
Done!