Query 032588
Match_columns 137
No_of_seqs 138 out of 1128
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:52:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3plu_A Ubiquitin-like modifier 99.8 4.7E-20 1.6E-24 127.9 8.6 73 4-84 16-88 (93)
2 2wyq_A HHR23A, UV excision rep 99.8 1.7E-19 5.9E-24 120.0 9.8 78 8-93 4-85 (85)
3 4a20_A Ubiquitin-like protein 99.8 2.1E-19 7.1E-24 125.3 10.2 76 7-90 17-97 (98)
4 3m62_B UV excision repair prot 99.8 1.3E-19 4.5E-24 127.1 7.8 75 9-91 1-76 (106)
5 4dwf_A HLA-B-associated transc 99.8 3.5E-19 1.2E-23 120.2 9.2 77 6-91 2-79 (90)
6 2lxa_A Ubiquitin-like protein 99.8 2.2E-19 7.4E-24 122.7 7.9 76 9-92 1-80 (87)
7 3phx_B Ubiquitin-like protein 99.8 5.2E-19 1.8E-23 116.5 8.9 71 8-86 3-73 (79)
8 1uh6_A Ubiquitin-like 5; beta- 99.8 2.7E-19 9.2E-24 125.6 7.3 72 7-86 26-98 (100)
9 1uel_A HHR23B, UV excision rep 99.8 1.4E-18 4.8E-23 119.1 10.7 74 10-91 1-78 (95)
10 3v6c_B Ubiquitin; structural g 99.8 1.1E-18 3.7E-23 118.4 9.5 75 5-87 13-87 (91)
11 2kk8_A Uncharacterized protein 99.8 6.2E-19 2.1E-23 119.0 7.8 75 8-90 9-84 (84)
12 2faz_A Ubiquitin-like containi 99.8 2E-18 6.7E-23 113.3 9.8 74 9-89 2-76 (78)
13 4eew_A Large proline-rich prot 99.8 1.1E-18 3.9E-23 117.2 8.5 74 5-87 13-87 (88)
14 2dzi_A Ubiquitin-like protein 99.8 2.2E-18 7.5E-23 113.3 9.2 75 7-89 5-79 (81)
15 2hj8_A Interferon-induced 17 k 99.8 1.3E-18 4.4E-23 117.7 8.1 75 8-90 3-77 (88)
16 1wju_A NEDD8 ultimate buster-1 99.8 2.2E-18 7.5E-23 120.9 8.9 77 8-91 14-93 (100)
17 3dbh_I NEDD8; cell cycle, acti 99.8 2.3E-18 7.9E-23 115.0 8.5 74 6-87 9-82 (88)
18 1yqb_A Ubiquilin 3; structural 99.8 2.8E-18 9.6E-23 119.2 9.1 80 2-90 15-94 (100)
19 4fbj_B NEDD8; effector-HOST ta 99.8 2.8E-18 9.5E-23 116.1 8.7 71 10-88 1-71 (88)
20 1wgd_A Homocysteine-responsive 99.8 3.4E-18 1.2E-22 116.5 9.1 79 6-91 4-87 (93)
21 1wy8_A NP95-like ring finger p 99.8 9.3E-18 3.2E-22 112.8 10.8 77 6-89 4-81 (89)
22 3mtn_B UBA80, ubcep1, ubiquiti 99.7 5.5E-18 1.9E-22 112.2 9.1 74 8-89 2-75 (85)
23 2bwf_A Ubiquitin-like protein 99.7 6.1E-18 2.1E-22 110.2 9.1 72 10-90 5-76 (77)
24 3n3k_B Ubiquitin; hydrolase, p 99.7 4E-18 1.4E-22 113.0 8.0 74 8-89 2-75 (85)
25 2kan_A Uncharacterized protein 99.7 6.7E-18 2.3E-22 116.1 9.2 76 6-90 12-88 (94)
26 1ttn_A DC-UBP, dendritic cell- 99.7 5.4E-18 1.8E-22 118.5 8.5 77 7-91 21-98 (106)
27 2klc_A Ubiquilin-1; ubiquitin- 99.7 9.8E-18 3.4E-22 116.5 9.8 77 6-91 22-98 (101)
28 1ndd_A NEDD8, protein (ubiquit 99.7 9.6E-18 3.3E-22 108.5 8.6 70 10-87 1-70 (76)
29 4hcn_B Polyubiquitin, ubiquiti 99.7 6.1E-18 2.1E-22 116.5 8.0 73 7-87 20-92 (98)
30 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.4E-17 4.8E-22 111.3 9.5 76 7-90 5-80 (87)
31 3a9j_A Ubiquitin; protein comp 99.7 1.4E-17 4.8E-22 107.7 9.2 72 10-89 1-72 (76)
32 1wgg_A Ubiquitin carboxyl-term 99.7 7E-18 2.4E-22 116.5 7.8 76 6-91 4-80 (96)
33 2daf_A FLJ35834 protein; hypot 99.7 8.7E-18 3E-22 120.9 8.5 83 8-98 14-98 (118)
34 1j8c_A Ubiquitin-like protein 99.7 1.5E-17 5.2E-22 120.0 9.5 78 3-89 26-103 (125)
35 1wxv_A BAG-family molecular ch 99.7 1.5E-17 5.1E-22 113.0 8.8 76 7-91 5-86 (92)
36 1v5o_A 1700011N24RIK protein; 99.7 1.4E-17 4.7E-22 115.8 8.8 76 7-89 5-84 (102)
37 1x1m_A Ubiquitin-like protein 99.7 1.7E-17 6E-22 116.2 9.1 75 8-90 11-100 (107)
38 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2.4E-17 8.2E-22 112.1 9.2 71 10-88 2-72 (96)
39 1yx5_B Ubiquitin; proteasome, 99.7 3.5E-17 1.2E-21 112.3 9.8 72 10-89 1-72 (98)
40 1sif_A Ubiquitin; hydrophobic 99.7 1.9E-17 6.6E-22 112.0 8.2 71 10-88 10-80 (88)
41 2uyz_B Small ubiquitin-related 99.7 1.2E-17 4.1E-22 109.9 7.0 72 8-87 2-74 (79)
42 1wia_A Hypothetical ubiquitin- 99.7 3.6E-17 1.2E-21 111.7 9.3 75 6-91 4-80 (95)
43 1wx8_A Riken cDNA 4931431F19; 99.7 1.5E-17 5.2E-22 113.6 7.4 76 6-90 14-89 (96)
44 3vdz_A Ubiquitin-40S ribosomal 99.7 3.7E-17 1.3E-21 115.3 9.1 72 8-87 34-105 (111)
45 1v5t_A 8430435I17RIK protein; 99.7 1.7E-17 5.8E-22 112.9 6.8 76 7-91 5-84 (90)
46 1wx7_A Ubiquilin 3; ubiquitin- 99.7 5.1E-17 1.7E-21 113.3 9.1 76 5-89 13-88 (106)
47 1wyw_B Ubiquitin-like protein 99.7 2.8E-17 9.5E-22 113.3 7.5 73 7-87 19-92 (97)
48 3m63_B Ubiquitin domain-contai 99.7 5.8E-18 2E-22 117.9 4.0 73 8-89 27-100 (101)
49 2kdb_A Homocysteine-responsive 99.7 1.9E-17 6.7E-22 115.4 6.6 72 7-85 21-97 (99)
50 3l0w_B Monoubiquitinated proli 99.7 4.6E-17 1.6E-21 122.8 9.0 71 10-88 1-72 (169)
51 2dzj_A Synaptic glycoprotein S 99.7 8E-17 2.8E-21 109.8 8.4 72 9-87 10-86 (88)
52 1we6_A Splicing factor, putati 99.7 1.5E-16 5.3E-21 111.8 10.0 76 8-91 26-105 (111)
53 3u30_A Ubiquitin, linear DI-ub 99.7 1.9E-16 6.5E-21 118.3 10.7 76 7-90 18-94 (172)
54 1wgh_A Ubiquitin-like 3, HCG-1 99.7 3.4E-16 1.2E-20 112.2 11.4 80 6-91 13-100 (116)
55 1se9_A Ubiquitin family; ubiqu 99.7 3.1E-16 1.1E-20 114.0 11.0 73 4-82 11-89 (126)
56 3rt3_B Ubiquitin-like protein 99.7 9.9E-17 3.4E-21 118.1 8.4 72 10-89 3-76 (159)
57 3b1l_X E3 ubiquitin-protein li 99.5 3.1E-18 1.1E-22 111.7 0.0 70 10-87 1-70 (76)
58 2l7r_A Ubiquitin-like protein 99.7 8E-17 2.7E-21 110.2 6.8 71 7-87 17-87 (93)
59 2ojr_A Ubiquitin; lanthide-bin 99.7 2.6E-16 9E-21 110.7 9.5 73 8-88 34-106 (111)
60 2kdi_A Ubiquitin, vacuolar pro 99.7 4E-16 1.4E-20 110.7 9.7 74 8-89 8-81 (114)
61 1v2y_A 3300001G02RIK protein; 99.7 4.5E-17 1.5E-21 115.0 4.5 73 8-88 6-95 (105)
62 1v86_A DNA segment, CHR 7, way 99.7 6.7E-17 2.3E-21 111.2 4.9 74 7-90 15-88 (95)
63 2kd0_A LRR repeats and ubiquit 99.7 2.2E-16 7.7E-21 106.4 7.4 74 8-90 11-84 (85)
64 2gow_A HCG-1 protein, ubiquiti 99.7 7.6E-16 2.6E-20 111.6 10.3 72 7-84 15-92 (125)
65 4dbg_A Ranbp-type and C3HC4-ty 99.7 5.6E-16 1.9E-20 109.5 9.2 74 9-89 24-100 (105)
66 3b08_A Polyubiquitin-C, ubiqui 99.6 9.8E-16 3.4E-20 110.8 10.4 73 10-90 1-73 (152)
67 3rt3_B Ubiquitin-like protein 99.6 5.1E-16 1.7E-20 114.2 9.0 73 7-87 79-151 (159)
68 2fnj_B Transcription elongatio 99.6 2E-16 6.9E-21 113.8 5.7 72 10-88 1-80 (118)
69 4ajy_B Transcription elongatio 99.6 4.4E-16 1.5E-20 112.1 6.8 72 10-88 1-80 (118)
70 1we7_A SF3A1 protein; structur 99.6 2E-15 6.9E-20 106.8 9.3 74 8-88 24-106 (115)
71 1t0y_A Tubulin folding cofacto 99.6 2.5E-15 8.5E-20 107.7 9.9 78 8-92 5-90 (122)
72 3q3f_A Ribonuclease/ubiquitin 99.6 1.1E-15 3.6E-20 117.8 8.4 71 9-87 105-175 (189)
73 4b6w_A Tubulin-specific chaper 99.6 4.1E-15 1.4E-19 101.1 9.5 75 9-90 2-85 (86)
74 3u5e_m 60S ribosomal protein L 99.6 5.8E-17 2E-21 116.8 0.0 71 10-88 1-72 (128)
75 2kjr_A CG11242; UBL, ubiquitin 99.6 3.4E-15 1.2E-19 103.2 8.0 74 6-86 12-92 (95)
76 3b08_A Polyubiquitin-C, ubiqui 99.6 7.9E-15 2.7E-19 106.0 9.7 73 8-88 75-147 (152)
77 2kj6_A Tubulin folding cofacto 99.6 6.1E-15 2.1E-19 102.4 8.5 76 6-88 11-95 (97)
78 1v6e_A Cytoskeleton-associated 99.6 1.1E-14 3.7E-19 99.8 9.4 73 9-88 7-86 (95)
79 3shq_A UBLCP1; phosphatase, hy 99.6 5.6E-15 1.9E-19 121.4 8.5 75 7-90 3-80 (320)
80 3u5c_f 40S ribosomal protein S 99.6 2.5E-16 8.6E-21 117.5 0.0 70 10-87 1-71 (152)
81 3u30_A Ubiquitin, linear DI-ub 99.6 1E-14 3.6E-19 108.8 8.2 72 8-87 95-166 (172)
82 2dzm_A FAS-associated factor 1 99.5 9.4E-15 3.2E-19 102.1 6.6 69 9-86 8-78 (100)
83 1oqy_A HHR23A, UV excision rep 99.5 1.2E-14 4.2E-19 121.6 7.6 77 8-90 6-84 (368)
84 1wf9_A NPL4 family protein; be 99.5 1.6E-14 5.4E-19 101.3 7.0 75 8-91 6-96 (107)
85 3ai5_A Yeast enhanced green fl 99.5 3.9E-14 1.3E-18 116.2 8.9 73 7-87 231-303 (307)
86 2kzr_A Ubiquitin thioesterase 99.5 2.5E-14 8.7E-19 96.2 5.5 75 10-90 1-78 (86)
87 2io1_B Small ubiquitin-related 99.4 1.4E-12 4.7E-17 89.9 8.4 75 6-88 4-79 (94)
88 2xzm_9 RPS31E; ribosome, trans 99.4 3.9E-14 1.3E-18 109.2 0.0 66 10-88 1-67 (189)
89 1wjn_A Tubulin-folding protein 99.3 1.5E-11 5E-16 84.3 11.0 76 7-88 7-91 (97)
90 2io0_B Small ubiquitin-related 99.3 7E-12 2.4E-16 86.0 8.9 74 7-88 3-77 (91)
91 3a4r_A Nfatc2-interacting prot 99.3 1.2E-11 4E-16 82.4 8.5 75 6-87 4-78 (79)
92 1wm3_A Ubiquitin-like protein 99.3 1.2E-11 4E-16 80.8 7.7 69 10-86 2-70 (72)
93 2d07_B Ubiquitin-like protein 99.3 2.7E-11 9.3E-16 83.1 8.5 73 7-87 15-88 (93)
94 1wz0_A Ubiquitin-like protein 99.2 3.8E-11 1.3E-15 84.2 7.0 72 7-86 22-93 (104)
95 2k8h_A Small ubiquitin protein 99.2 3.4E-11 1.2E-15 85.4 6.0 73 7-87 24-97 (110)
96 2eke_C Ubiquitin-like protein 99.1 1.7E-10 5.7E-15 81.3 8.6 72 7-87 29-101 (106)
97 3kyd_D Small ubiquitin-related 98.9 6.5E-09 2.2E-13 74.3 8.7 73 7-87 38-111 (115)
98 3pge_A SUMO-modified prolifera 98.8 2.3E-08 8E-13 77.5 8.7 74 7-89 27-101 (200)
99 2pjh_A Protein NPL4, nuclear p 98.7 3.8E-09 1.3E-13 70.5 2.6 72 8-86 3-77 (80)
100 3goe_A DNA repair protein RAD6 98.5 8.3E-07 2.8E-11 59.5 8.9 71 8-86 8-80 (82)
101 3tix_A Ubiquitin-like protein 98.5 2.1E-07 7.1E-12 72.1 6.7 73 7-88 55-128 (207)
102 2jxx_A Nfatc2-interacting prot 98.5 1.2E-06 4E-11 60.7 8.9 74 6-86 22-95 (97)
103 4efo_A Serine/threonine-protei 98.4 5.7E-07 1.9E-11 62.1 5.5 53 9-63 12-64 (94)
104 3v7o_A Minor nucleoprotein VP3 98.2 1.5E-07 5.3E-12 73.7 0.0 74 6-88 18-92 (227)
105 3uf8_A Ubiquitin-like protein 98.1 9.3E-06 3.2E-10 62.6 7.3 73 6-87 18-91 (209)
106 3ix6_A TS, tsase, thymidylate 97.9 1.6E-06 5.4E-11 72.4 0.0 74 6-88 18-92 (360)
107 2l76_A Nfatc2-interacting prot 97.9 7.1E-05 2.4E-09 51.6 8.0 69 7-84 19-87 (95)
108 4da1_A Protein phosphatase 1K, 97.7 6.5E-06 2.2E-10 68.2 0.0 72 7-87 28-100 (389)
109 2bps_A YUKD protein; ubiquitin 97.5 0.00023 7.7E-09 47.7 6.3 69 9-85 4-79 (81)
110 2al3_A TUG long isoform; TUG U 97.5 0.00027 9.2E-09 48.3 6.2 77 8-92 8-85 (90)
111 3qx1_A FAS-associated factor 1 97.4 0.0016 5.5E-08 42.9 9.1 76 6-87 4-81 (84)
112 2kc2_A Talin-1, F1; FERM, adhe 97.2 0.00038 1.3E-08 50.3 4.6 70 11-88 13-121 (128)
113 2dzk_A UBX domain-containing p 96.8 0.0091 3.1E-07 41.4 8.8 81 7-92 11-93 (109)
114 1wj4_A KIAA0794 protein; UBX d 96.4 0.015 5.2E-07 41.2 7.6 75 7-87 41-117 (124)
115 2cr5_A Reproduction 8; UBX dom 96.2 0.022 7.4E-07 39.3 7.3 75 7-88 21-97 (109)
116 4e71_A Plexin-B2, MM1; transme 95.6 0.15 5.1E-06 35.8 9.6 80 8-87 10-109 (111)
117 3rpf_C Molybdopterin convertin 95.5 0.1 3.4E-06 33.1 8.0 65 10-86 1-68 (74)
118 3ivf_A Talin-1; FERM domain, c 95.2 0.13 4.4E-06 41.8 9.6 82 10-100 4-95 (371)
119 2l32_A Small archaeal modifier 95.0 0.085 2.9E-06 34.0 6.4 59 10-86 1-60 (74)
120 1s3s_G P47 protein; AAA ATPase 94.5 0.12 4.2E-06 36.5 6.7 72 6-83 49-122 (127)
121 1oey_A P67-PHOX, neutrophil cy 94.5 0.12 4E-06 34.5 6.1 48 8-60 4-51 (83)
122 2r2o_A Plexin-B1; effector dom 94.4 0.23 8E-06 36.1 8.2 81 8-88 23-128 (138)
123 1wgk_A Riken cDNA 2900073H19 p 94.1 0.13 4.4E-06 35.9 6.1 35 8-42 10-54 (114)
124 4a3p_A Ubiquitin carboxyl-term 93.8 0.14 4.9E-06 39.1 6.3 75 10-90 128-209 (217)
125 4e74_A Plexin-A4; RBD, structu 93.4 0.52 1.8E-05 33.3 8.2 80 8-87 12-113 (117)
126 3kuz_A Plexin-C1; structural g 93.4 0.59 2E-05 33.4 8.5 80 8-87 18-125 (126)
127 3h6n_A Plexin-D1; structural g 93.3 1.4 4.9E-05 31.5 10.4 80 9-88 4-104 (127)
128 1ryj_A Unknown; beta/alpha pro 92.9 0.73 2.5E-05 28.9 7.7 60 9-86 4-64 (70)
129 3jyu_A Ubiquitin carboxyl-term 92.6 0.61 2.1E-05 35.9 8.3 61 24-90 155-221 (231)
130 1vjk_A Molybdopterin convertin 92.5 1.3 4.4E-05 29.3 8.8 67 8-86 8-91 (98)
131 2kvr_A Ubiquitin carboxyl-term 91.9 0.11 3.8E-06 37.1 3.0 34 23-58 58-91 (130)
132 2c7h_A RBBP6, retinoblastoma-b 91.7 0.68 2.3E-05 31.0 6.6 78 8-93 5-84 (86)
133 2daj_A KIAA0977 protein, COBL- 91.4 0.38 1.3E-05 32.5 5.0 75 7-89 8-82 (91)
134 2qjl_A URM1, ubiquitin-related 90.3 1.6 5.6E-05 28.9 7.5 34 9-42 1-43 (99)
135 1tyg_B YJBS; alpha beta barrel 89.2 0.75 2.6E-05 30.5 5.1 62 7-86 18-81 (87)
136 1vd2_A Protein kinase C, IOTA 89.2 2 6.8E-05 28.7 7.2 51 5-59 2-53 (89)
137 4eut_A Serine/threonine-protei 86.6 2.8 9.6E-05 33.3 7.9 49 12-62 313-361 (396)
138 3ig3_A Plxna3 protein; plexin 86.0 6 0.0002 35.1 10.1 81 8-88 232-334 (627)
139 2k9x_A Tburm1, uncharacterized 84.5 0.64 2.2E-05 32.1 2.7 74 9-86 4-95 (110)
140 2ylm_A Ubiquitin carboxyl-term 84.0 0.69 2.4E-05 39.8 3.3 32 23-56 38-69 (530)
141 3onh_A Ubiquitin-activating en 83.9 2.1 7.1E-05 30.6 5.3 63 24-89 9-79 (127)
142 3qa8_A MGC80376 protein; kinas 83.5 3.7 0.00012 36.4 7.8 98 23-126 324-436 (676)
143 3hm6_X Plexin-B1; structural g 82.9 6.3 0.00022 35.0 8.9 81 8-88 256-361 (644)
144 2kmm_A Guanosine-3',5'-BIS(dip 82.2 2.7 9.2E-05 25.7 4.8 60 10-86 1-61 (73)
145 1fm0_D Molybdopterin convertin 81.2 5.1 0.00017 24.9 6.0 50 23-85 19-73 (81)
146 1wgy_A RAP guanine nucleotide 80.5 7.7 0.00026 26.6 7.0 75 7-89 7-86 (104)
147 2hj1_A Hypothetical protein; s 80.5 7 0.00024 26.3 6.7 69 8-86 11-83 (97)
148 3po0_A Small archaeal modifier 79.9 9.3 0.00032 24.3 7.0 51 23-85 20-81 (89)
149 1wgr_A Growth factor receptor- 77.9 8.6 0.00029 26.1 6.5 59 6-67 6-71 (100)
150 2l52_A Methanosarcina acetivor 75.9 4.3 0.00015 26.8 4.5 69 8-85 2-91 (99)
151 2k5p_A THis protein, thiamine- 75.0 1.8 6.3E-05 27.8 2.4 51 24-86 9-63 (78)
152 2q5w_D Molybdopterin convertin 74.7 3.7 0.00013 25.4 3.8 51 23-86 18-71 (77)
153 1y8x_B Ubiquitin-activating en 71.0 9.1 0.00031 25.8 5.3 62 23-87 7-82 (98)
154 3hvz_A Uncharacterized protein 70.6 8 0.00027 24.9 4.7 60 11-87 7-67 (78)
155 2kl0_A Putative thiamin biosyn 69.7 5 0.00017 25.3 3.5 49 25-86 10-59 (73)
156 3dwg_C 9.5 kDa culture filtrat 69.4 19 0.00066 23.0 6.8 54 24-86 20-86 (93)
157 1rws_A Hypothetical protein PF 66.3 3.2 0.00011 26.2 2.1 45 24-84 24-68 (77)
158 1f0z_A THis protein; ubiquitin 64.5 13 0.00044 22.5 4.6 51 24-86 9-60 (66)
159 2cu3_A Unknown function protei 63.9 15 0.00051 22.1 4.8 49 25-86 9-58 (64)
160 1hji_B NUN-protein; bacterioph 63.6 3.2 0.00011 21.2 1.3 14 118-131 12-25 (26)
161 2juo_A GA-binding protein alph 62.7 26 0.00089 23.3 6.0 61 25-92 7-69 (89)
162 1ip9_A BEM1 protein; ubiquitin 61.7 31 0.0011 22.8 6.3 47 8-60 11-58 (85)
163 2lkz_A RNA-binding protein 5; 58.7 13 0.00046 24.0 4.1 45 1-57 1-45 (95)
164 1q1o_A Cell division control p 58.5 8.7 0.0003 26.1 3.2 40 8-49 4-49 (98)
165 2g1e_A Hypothetical protein TA 56.9 33 0.0011 21.4 6.5 54 24-85 18-82 (90)
166 2c5l_C Phosphoinositide-specif 55.6 43 0.0015 23.3 6.5 49 6-56 4-61 (117)
167 3ge3_C Toluene-4-monooxygenase 54.7 43 0.0015 22.1 9.5 72 10-87 4-82 (84)
168 2dhz_A RAP guanine nucleotide 53.7 31 0.0011 24.1 5.5 76 6-89 6-92 (120)
169 1pqs_A Cell division control p 50.9 9.4 0.00032 24.6 2.3 25 23-49 4-28 (77)
170 4gdk_A Ubiquitin-like protein 50.3 36 0.0012 22.4 5.2 52 7-60 3-57 (91)
171 2v1y_A Phosphatidylinositol-4, 46.5 40 0.0014 23.1 5.0 34 8-42 18-51 (108)
172 3ivf_A Talin-1; FERM domain, c 45.8 1.1E+02 0.0038 24.2 9.4 74 8-89 84-167 (371)
173 2aff_B MKI67 FHA domain intera 42.4 7.4 0.00025 22.7 0.6 15 103-117 29-43 (44)
174 3qij_A Protein 4.1; cytoskelet 41.8 25 0.00084 27.4 3.9 48 8-58 16-64 (296)
175 2ylm_A Ubiquitin carboxyl-term 41.3 33 0.0011 29.3 4.8 76 8-90 129-218 (530)
176 2bt6_A Adrenodoxin 1; rutheniu 40.3 36 0.0012 22.2 4.0 30 6-36 3-32 (108)
177 1ef1_A Moesin; membrane, FERM 38.5 33 0.0011 26.2 4.1 67 9-84 1-73 (294)
178 3r8s_T 50S ribosomal protein L 35.9 74 0.0025 21.0 5.0 38 23-62 30-68 (93)
179 4gmv_A RAS-associated and plec 35.8 86 0.0029 24.7 6.2 72 9-88 31-113 (281)
180 1h4r_A Merlin; FERM, neurofibr 35.8 41 0.0014 26.0 4.2 69 7-84 20-93 (314)
181 1j0g_A Hypothetical protein 18 35.5 95 0.0032 20.5 7.1 70 10-86 11-84 (92)
182 3hui_A Ferredoxin; cytochrome 33.9 65 0.0022 22.1 4.6 31 5-36 17-47 (126)
183 3au4_A Myosin-X; protein-prote 33.7 71 0.0024 26.9 5.7 48 8-58 215-264 (555)
184 1doa_B RHO GDI 1, protein (GDP 30.1 40 0.0014 26.0 3.2 25 102-126 32-71 (219)
185 2i1j_A Moesin; FERM, coiled-co 28.7 2.1E+02 0.0073 24.5 7.9 68 8-84 3-76 (575)
186 3hk0_A Growth factor receptor- 28.6 1.2E+02 0.0039 23.5 5.7 70 12-89 11-89 (256)
187 2cu1_A Mitogen-activated prote 28.1 60 0.002 22.2 3.4 43 9-58 8-50 (103)
188 2y5c_A Adrenodoxin-like protei 27.7 82 0.0028 20.5 4.2 28 8-36 4-31 (109)
189 3tve_T 50S ribosomal protein L 27.4 1E+02 0.0036 20.2 4.6 39 22-62 23-62 (92)
190 2eki_A DRG 1, developmentally- 27.4 1.4E+02 0.0047 19.8 7.7 67 8-89 10-88 (93)
191 2nvu_B Maltose binding protein 26.6 2.1E+02 0.0071 25.1 7.7 60 23-87 714-789 (805)
192 1wmh_B Partitioning defective- 25.6 1.3E+02 0.0046 19.6 4.8 48 8-59 5-54 (86)
193 1jq4_A Methane monooxygenase c 25.1 95 0.0032 19.6 4.0 30 8-38 3-32 (98)
194 3pvl_A Myosin VIIA isoform 1; 25.0 1.1E+02 0.0037 26.8 5.5 47 8-57 262-309 (655)
195 4a6q_A Histone deacetylase com 25.0 48 0.0016 23.9 2.7 64 23-90 56-139 (143)
196 1f2r_I Inhibitor of caspase-ac 24.9 1.3E+02 0.0043 20.3 4.6 35 31-67 37-75 (100)
197 1v8c_A MOAD related protein; r 24.9 1.7E+02 0.0058 21.0 5.8 54 24-86 17-80 (168)
198 1wz3_A Autophagy 12B, ATG12B, 23.6 73 0.0025 21.1 3.2 41 7-49 11-54 (96)
199 2nnz_A Hypothetical protein; b 23.1 48 0.0016 23.8 2.4 36 3-40 23-61 (153)
200 2wlb_A ETP1-FD, electron trans 20.8 1.5E+02 0.0051 18.8 4.4 29 8-37 2-30 (103)
201 3w1s_C Ubiquitin-like protein 20.8 1.5E+02 0.005 19.4 4.3 40 7-48 6-48 (91)
202 2i1s_A Hypothetical protein; m 20.2 1.4E+02 0.0049 21.5 4.6 42 9-52 8-51 (188)
No 1
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.82 E-value=4.7e-20 Score=127.92 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=66.9
Q ss_pred CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032588 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (137)
Q Consensus 4 ~~~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~t 83 (137)
.+.+.+|+|+||+..|++ +.+.++++.||++||++|++ +.|+||++|||+|+|++|+|+.+ |++|+|++|++
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk-~~v~v~p~DTI~~LK~~I~~--k~Gip~~qQrLif~Gk~LkD~~T-----L~dY~I~dgst 87 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKK-VRVKCLGEDSVGDFKKVLSL--QIGTQPNKIVLQKGGSVLKDHIS-----LEDYEVHDQTN 87 (93)
T ss_dssp ----CEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCE
T ss_pred CCCCceEEEEEECCCCCE-EEEEECCcCHHHHHHHHHHH--HhCCCHHHEEEEeCCEEccCcCC-----HHHcCCCCCCE
Confidence 345678999999999977 89999999999999999999 99999999999999999999998 99999999999
Q ss_pred E
Q 032588 84 V 84 (137)
Q Consensus 84 L 84 (137)
|
T Consensus 88 L 88 (93)
T 3plu_A 88 L 88 (93)
T ss_dssp E
T ss_pred E
Confidence 9
No 2
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.81 E-value=1.7e-19 Score=120.01 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=66.9
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccC---CCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSA---NHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~---~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
.+|+|+||+.+++. +.++|++++||.+||++|++ . +|+|+++|||+|+|+.|+|+.+ |++|||++|++|
T Consensus 4 ~~m~i~vk~~~g~~-~~~~v~~~~TV~~lK~~i~~--~~~~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~i 75 (85)
T 2wyq_A 4 MAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEA--EKGRDAFPVAGQKLIYAGKILSDDVP-----IRDYRIDEKNFV 75 (85)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHHHH--HHCTTTCCGGGEEEEETTEECCTTSB-----GGGGCCCTTSEE
T ss_pred ceEEEEEEECCCCE-EEEEECCCCCHHHHHHHHHh--hccccCCCHHHeEEEECCEECcCCCC-----HHHcCCCCCCEE
Confidence 46999999998865 88999999999999999998 6 8999999999999999998888 999999999999
Q ss_pred -EEEecCCCC
Q 032588 85 -IAAVKPKPP 93 (137)
Q Consensus 85 -lv~~~p~~~ 93 (137)
++..+|++|
T Consensus 76 ~l~~~~~~~~ 85 (85)
T 2wyq_A 76 VVMVTKTKAG 85 (85)
T ss_dssp EEEEC-----
T ss_pred EEEEcCCCCC
Confidence 555555544
No 3
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.80 E-value=2.1e-19 Score=125.33 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=66.8
Q ss_pred CCceEEEEEeCCCCCcEEE--EecCCCcHHHHHHHH-HhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCC
Q 032588 7 SESVEITVKTIGPAPPSRL--SVSSPIKVRDLRKLI-ATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGD 82 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l--~v~~~~TV~dLK~~I-a~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I-~dg~ 82 (137)
.++|+|+||+.+|.. +.+ +|+++.||++||++| ++ ..|+|+++|||||+|+.|+|+.+ |++|+| ++|+
T Consensus 17 ~~~m~I~VKtl~g~~-~~i~v~v~~~~TV~~lK~~I~~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dy~I~~~g~ 88 (98)
T 4a20_A 17 NAAVHLTLKKIQAPK-FSIEHDFSPSDTILQIKQHLISE--EKASHISEIKLLLKGKVLHDNLF-----LSDLKVTPANS 88 (98)
T ss_dssp -CCEEEEEEECSSSC-EEEEEEECTTCBHHHHHHHHHHT--TSCSCGGGEEEEETTEEECTTCB-----GGGSCCBTTBC
T ss_pred CCCEEEEEEcCCCCE-EEEEEecCCCChHHHHHHHHHHH--hcCCChhhEEEEECCEECcCcCC-----HHHcCcCCCCC
Confidence 467999999998875 665 667999999999999 77 78999999999999999999988 999999 9999
Q ss_pred EE-EEEecC
Q 032588 83 SV-IAAVKP 90 (137)
Q Consensus 83 tL-lv~~~p 90 (137)
+| ++..+|
T Consensus 89 ti~lmvskp 97 (98)
T 4a20_A 89 TITVMIKPN 97 (98)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEeCC
Confidence 99 555554
No 4
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-19 Score=127.06 Aligned_cols=75 Identities=21% Similarity=0.331 Sum_probs=66.3
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
+|+|+||+.+|+. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|||++|++| ++.
T Consensus 1 mm~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 1 MVSLTFKNFKKEK-VPLDLEPSNTILETKTKLAQ--SISCEESQIKLIYSGKVLQDSKT-----VSECGLKDGDQVVFMV 72 (106)
T ss_dssp --CEEEECTTCCE-EEECCCTTSBHHHHHHHHHH--TTTSCGGGCEEEETTEECCTTSB-----TTTTTCCTTCEEEEEC
T ss_pred CEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCChhhEEEEECCEECCCcCC-----HHHcCCCCCCEEEEEE
Confidence 4899999998866 88999999999999999999 99999999999999999999888 999999999999 655
Q ss_pred ecCC
Q 032588 88 VKPK 91 (137)
Q Consensus 88 ~~p~ 91 (137)
.+|+
T Consensus 73 ~~~~ 76 (106)
T 3m62_B 73 SQKK 76 (106)
T ss_dssp CC--
T ss_pred cCCC
Confidence 5554
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.79 E-value=3.5e-19 Score=120.17 Aligned_cols=77 Identities=25% Similarity=0.494 Sum_probs=68.9
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL- 84 (137)
+..+|+|+||+.++.. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+| +|++|
T Consensus 2 ~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrLi~~Gk~L~d~~t-----L~~~~i-~g~~i~ 72 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKK-----LQEYNV-GGKVIH 72 (90)
T ss_dssp CCCEEEEEEEETTCCE-EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTC-TTEEEE
T ss_pred CCcEEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCeECCCCCC-----HHHcCC-CCcEEE
Confidence 3468999999998866 88999999999999999999 89999999999999999999888 999999 89999
Q ss_pred EEEecCC
Q 032588 85 IAAVKPK 91 (137)
Q Consensus 85 lv~~~p~ 91 (137)
++...|.
T Consensus 73 l~~~~~~ 79 (90)
T 4dwf_A 73 LVERAPP 79 (90)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 5555443
No 6
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.2e-19 Score=122.71 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=68.4
Q ss_pred ceEEEEEeCCCCCcEEEEec--CCCcHHHHHHHH-HhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCCEE
Q 032588 9 SVEITVKTIGPAPPSRLSVS--SPIKVRDLRKLI-ATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGDSV 84 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~--~~~TV~dLK~~I-a~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I-~dg~tL 84 (137)
+|+|+||+..+.. +.++|+ +++||.+||++| ++ ..|+|+++|||||+|+.|+|+.+ |++|+| .+|++|
T Consensus 1 mmqI~VKtl~g~~-~~i~v~v~~~~TV~~lK~~I~~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~y~I~~~~stl 72 (87)
T 2lxa_A 1 MVHLTLKKIQAPK-FSIEHDFSPSDTILQIKQHLISE--EKASHISEIKLLLKGKVLHDNLF-----LSDLKVTPANSTI 72 (87)
T ss_dssp CCEEEEEECSSSC-EECCEECCTTCBHHHHHHHHHHT--TSCSSSTTEEEEETTEECCTTCB-----HHHHCCCGGGCEE
T ss_pred CEEEEEEcCCCCE-EEEEEcCCCCCcHHHHHHHHHHH--hcCCChHHEEEEECCEECcCcCC-----HHHcCCCCCCCEE
Confidence 5899999999976 777655 999999999999 88 88999999999999999999988 999999 699999
Q ss_pred EEEecCCC
Q 032588 85 IAAVKPKP 92 (137)
Q Consensus 85 lv~~~p~~ 92 (137)
.|...|.-
T Consensus 73 ~v~~~~~~ 80 (87)
T 2lxa_A 73 TVMIKPNL 80 (87)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCc
Confidence 87777764
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=116.51 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=66.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
..|+|+||+.+|+. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|||++|++|.+
T Consensus 3 ~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~l~l 73 (79)
T 3phx_B 3 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFM 73 (79)
T ss_dssp CCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEE
T ss_pred CCEEEEEEeCCCCE-EEEEECCcChHHHHHHHHHh--hcCCCHHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence 57999999998866 88999999999999999998 99999999999999999999888 99999999999943
No 8
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=2.7e-19 Score=125.55 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=67.1
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
.++|+|+||+..|+. +.|+|++++||++||++|++ +.|+|+++|||+|.|++|+|+.+ |++|||++|++| |
T Consensus 26 ~~mm~I~VKtl~Gk~-i~lev~p~dTV~~lK~~Ia~--k~Gip~~qQrLi~~Gk~L~D~~T-----L~dygI~~gstlhL 97 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKK-VRVKCNTDDTIGDLKKLIAA--QTGTRWNKIVLKKWYTIFKDHVS-----LGDYEIHDGMNLEL 97 (100)
T ss_dssp CCEEEEEEECSSSSC-EEEEEETTSBHHHHHHHHHH--HHCCCGGGCEEEETTEECCSSCB-----HHHHTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCCHHHEEEEECCEECCCCCC-----HHHcCCCCCCEEEE
Confidence 457999999998865 99999999999999999999 99999999999999999999888 999999999999 5
Q ss_pred E
Q 032588 86 A 86 (137)
Q Consensus 86 v 86 (137)
+
T Consensus 98 ~ 98 (100)
T 1uh6_A 98 Y 98 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 9
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=1.4e-18 Score=119.14 Aligned_cols=74 Identities=22% Similarity=0.475 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccC---CCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSA---NHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~---~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
|+|+||+.+++. +.++|++++||.+||++|++ . +|+|+++|||+|+|+.|+|+.+ |++|||++|++| +
T Consensus 1 M~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~~~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~g~~i~l 72 (95)
T 1uel_A 1 MQVTLKTLQQQT-FKIDIDPEETVKALKEKIES--EKGKDAFPVAGQKLIYAGKILNDDTA-----LKEYKIDEKNFVVV 72 (95)
T ss_dssp CEEEEEETTCCE-EEEECCTTSBHHHHHHHHHH--HHCTTTCCTTTEEEEETTEECCTTSB-----GGGGTCCSSSEEEE
T ss_pred CEEEEEeCCCCE-EEEEECCCCHHHHHHHHHHh--hcccCCCChhhEEEEECCEECCCcCc-----HHHCCCCCCCEEEE
Confidence 789999998865 88999999999999999998 7 8999999999999999998888 999999999999 5
Q ss_pred EEecCC
Q 032588 86 AAVKPK 91 (137)
Q Consensus 86 v~~~p~ 91 (137)
+..+|+
T Consensus 73 ~~~~~~ 78 (95)
T 1uel_A 73 MVTKPK 78 (95)
T ss_dssp EESSCC
T ss_pred EEeCCC
Confidence 555443
No 10
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.78 E-value=1.1e-18 Score=118.40 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=68.6
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 5 ~~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
+....|+|+||+.+|+. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |.+|||++|++|
T Consensus 13 ~~~~~m~i~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i 84 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTH-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTL 84 (91)
T ss_dssp CCCCSEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTCB-----TGGGTCCTTCEE
T ss_pred CCCCeEEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHh--hhCCChhhEEEEECCeECCCcCc-----HHHCCCCCCCEE
Confidence 34567999999998866 88999999999999999999 99999999999999999999888 999999999999
Q ss_pred EEE
Q 032588 85 IAA 87 (137)
Q Consensus 85 lv~ 87 (137)
.+.
T Consensus 85 ~l~ 87 (91)
T 3v6c_B 85 HLV 87 (91)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=6.2e-19 Score=119.03 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=68.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee-cCCCCCCCCCCccccCCCCCCEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV-LDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~-L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
.-|+|+||+..|+. +.++|++++||++||++|++ .+|+|+++|||+|+|+. |+|+.+ |++|||++|++|.+
T Consensus 9 ~~~~i~vk~l~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~lL~D~~t-----L~~y~I~~gs~i~l 80 (84)
T 2kk8_A 9 SHMKFLVENLNGSS-FELEVDYRDTLLVVKQKIER--SQHIPVSKQTLIVDGIVILREDLT-----VEQCQIVPTSDIQL 80 (84)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCCSSSB-----HHHHTCCTTSCEEE
T ss_pred CceEEEEEecCCcE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCEEecCCcCC-----HHHcCCCCCCEEEE
Confidence 45999999999966 89999999999999999999 99999999999999999 998888 99999999999965
Q ss_pred EecC
Q 032588 87 AVKP 90 (137)
Q Consensus 87 ~~~p 90 (137)
...|
T Consensus 81 v~~p 84 (84)
T 2kk8_A 81 EVSS 84 (84)
T ss_dssp EECC
T ss_pred EEcC
Confidence 5544
No 12
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2e-18 Score=113.31 Aligned_cols=74 Identities=26% Similarity=0.340 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 9 SVEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~-v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
.|+|+||+..|+..+.++ |++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|||++|++|++.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~--~~gip~~~qrL~~~g~~L~d~~t-----L~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQE--LFHVEPGLQRLFYRGKQMEDGHT-----LFDYEVRLNDTIQLL 74 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TTTTTCCTTCEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 599999999886623798 9999999999999999 99999999999999999998888 999999999999544
Q ss_pred ec
Q 032588 88 VK 89 (137)
Q Consensus 88 ~~ 89 (137)
..
T Consensus 75 ~r 76 (78)
T 2faz_A 75 VR 76 (78)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 13
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=117.20 Aligned_cols=74 Identities=26% Similarity=0.509 Sum_probs=66.4
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 5 ~~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
+.+++|+|+||+.+++. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++||| +|++|
T Consensus 13 ~~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i-~g~~i 83 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKK-----LQEYNV-GGKVI 83 (88)
T ss_dssp --CCEEEEEEEETTSCE-EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTC-TTEEE
T ss_pred cCCCeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEECCCCCc-----HHHcCC-CCcEE
Confidence 34567999999998866 88999999999999999999 89999999999999999999888 999999 89999
Q ss_pred -EEE
Q 032588 85 -IAA 87 (137)
Q Consensus 85 -lv~ 87 (137)
++.
T Consensus 84 ~lv~ 87 (88)
T 4eew_A 84 HLVE 87 (88)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 543
No 14
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=113.31 Aligned_cols=75 Identities=25% Similarity=0.394 Sum_probs=68.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
+++|+|+||+.++.. +.++|++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|||++|++|++
T Consensus 5 ~~~m~i~vk~~~g~~-~~~~v~~~~tV~~LK~~i~~--~~~i~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~l 76 (81)
T 2dzi_A 5 SSGMQLTVKALQGRE-CSLQVPEDELVSTLKQLVSE--KLNVPVRQQRLLFKGKALADGKR-----LSDYSIGPNSKLNL 76 (81)
T ss_dssp SSSEEEEEEETTSCE-EEEEECSSCBHHHHHHHHHH--HTCCCTTTCEEEETTEECCTTSB-----GGGGTCCSSBCCEE
T ss_pred CCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEEEECCeECCCCCc-----HHHcCCCCCCEEEE
Confidence 467999999988854 88999999999999999999 99999999999999999998888 99999999999955
Q ss_pred Eec
Q 032588 87 AVK 89 (137)
Q Consensus 87 ~~~ 89 (137)
..+
T Consensus 77 ~~~ 79 (81)
T 2dzi_A 77 VVK 79 (81)
T ss_dssp ECC
T ss_pred EEe
Confidence 544
No 15
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=117.66 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=67.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
++|+|+||+..|+. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|||++|++|.+.
T Consensus 3 ~~m~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 3 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFMN 74 (88)
T ss_dssp CEEEEEEEETTSCE-EEEEEESSSBHHHHHHHHHH--HTCSCTTTEEEESSSSCCCTTSB-----HHHHHCSTTCEEEEE
T ss_pred ccEEEEEECCCCCE-EEEEECCCCcHHHHHHHHHH--HhCCChhHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEE
Confidence 46999999998855 88999999999999999999 99999999999999999998888 999999999999554
Q ss_pred ecC
Q 032588 88 VKP 90 (137)
Q Consensus 88 ~~p 90 (137)
..+
T Consensus 75 ~~~ 77 (88)
T 2hj8_A 75 LRL 77 (88)
T ss_dssp EC-
T ss_pred EEc
Confidence 443
No 16
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.2e-18 Score=120.88 Aligned_cols=77 Identities=17% Similarity=0.065 Sum_probs=66.6
Q ss_pred CceEEEEEeCCC---CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 8 ESVEITVKTIGP---APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 8 ~~m~I~VKt~~~---~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
++.+|.|++.++ ...+.++|++++||.+||++|++ +.|+||++|||||.||+|+|+.+ |++|+|++|++|
T Consensus 14 g~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~--k~gip~~qQrLI~~GKiL~D~~T-----L~~y~I~~gsti 86 (100)
T 1wju_A 14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAE--TFGLQENYIKIVINKKQLQLGKT-----LEEQGVAHNVKA 86 (100)
T ss_dssp CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHH--HTTCCSTTCEEEETTEECCTTSB-----HHHHTCCSSEEE
T ss_pred ceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHH--HHCcCHHHeEEEeCCeECCCCCc-----HHHcCCCCCCEE
Confidence 456778887762 23489999999999999999999 99999999999999999999988 999999999999
Q ss_pred EEEecCC
Q 032588 85 IAAVKPK 91 (137)
Q Consensus 85 lv~~~p~ 91 (137)
+|+....
T Consensus 87 ~vl~lrg 93 (100)
T 1wju_A 87 MVLELKQ 93 (100)
T ss_dssp EEECCCC
T ss_pred EEEEECC
Confidence 6665433
No 17
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.76 E-value=2.3e-18 Score=115.00 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=67.9
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
...+|+|+||+.++.. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|.
T Consensus 9 ~~~~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~i~ 80 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLH 80 (88)
T ss_dssp CCCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTSB-----GGGGTCCTTCEEE
T ss_pred CCCcEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcCHHHEEEEECCeECCCCCc-----HHHcCCCCCCEEE
Confidence 3467999999998866 89999999999999999999 89999999999999999999888 9999999999995
Q ss_pred EE
Q 032588 86 AA 87 (137)
Q Consensus 86 v~ 87 (137)
+.
T Consensus 81 l~ 82 (88)
T 3dbh_I 81 LV 82 (88)
T ss_dssp EC
T ss_pred EE
Confidence 44
No 18
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.8e-18 Score=119.22 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=70.8
Q ss_pred CCCCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCC
Q 032588 2 GMGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNG 81 (137)
Q Consensus 2 ~~~~~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg 81 (137)
.|...+.+|+|+||+.+++ +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|||++|
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~--~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~ygI~~g 85 (100)
T 1yqb_A 15 VPRGSPHLIKVTVKTPKDK--EDFSVTDTCTIQQLKEEISQ--RFKAHPDQLVLIFAGKILKDPDS-----LAQCGVRDG 85 (100)
T ss_dssp CCSCCTTEEEEEEECSSCE--EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----HHHHTCCTT
T ss_pred CCCCCCCeEEEEEEcCCCc--EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHCCCCCC
Confidence 3555678899999998874 68999999999999999999 89999999999999999998888 999999999
Q ss_pred CEEEEEecC
Q 032588 82 DSVIAAVKP 90 (137)
Q Consensus 82 ~tLlv~~~p 90 (137)
++|++..++
T Consensus 86 stI~l~~r~ 94 (100)
T 1yqb_A 86 LTVHLVIKR 94 (100)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEcC
Confidence 999444443
No 19
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=2.8e-18 Score=116.15 Aligned_cols=71 Identities=18% Similarity=0.363 Sum_probs=65.7
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~ 88 (137)
|+|+||+.+++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|.+..
T Consensus 1 M~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHLVL 71 (88)
T ss_dssp CEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TTTTTCCTTCEEEEEC
T ss_pred CEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChhHEEEEECCeECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 789999998866 89999999999999999999 99999999999999999999888 9999999999994433
No 20
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=3.4e-18 Score=116.53 Aligned_cols=79 Identities=23% Similarity=0.173 Sum_probs=68.1
Q ss_pred CCCceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCC--CCCCCceEEEecCeecCCCCCCCCCCcccc--CCCC
Q 032588 6 ISESVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSAN--HLPIENLRLVFRGKVLDDTQDDDDRDDVYL--QLSN 80 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~-~~~l~v~~~~TV~dLK~~Ia~~~~~--~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~--~I~d 80 (137)
+..+|+|+||+.++.. ++.|++++++||.+||++|++ .+ ++|+++|||||+|+.|+|+.+ |++| +|++
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~--~~~~~i~~~~QrLi~~Gk~L~D~~t-----L~~~~~~i~~ 76 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSR--VYPERPRPEDQRLIYSGKLLLDHQC-----LRDLLPKQEK 76 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHH--HSTTCCCTTTCEEEETTEECCSSSC-----HHHHSCSSSC
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHH--HhcCCCChHHeEEEECCEECcCcCC-----HHHHhcCCCC
Confidence 3467999999998763 367788899999999999998 77 999999999999999999888 9999 9999
Q ss_pred CCEEEEEecCC
Q 032588 81 GDSVIAAVKPK 91 (137)
Q Consensus 81 g~tLlv~~~p~ 91 (137)
|++|.+..+++
T Consensus 77 ~~~i~lv~~~~ 87 (93)
T 1wgd_A 77 RHVLHLVCNVK 87 (93)
T ss_dssp SEEEEEECCCC
T ss_pred CCEEEEEeCCC
Confidence 99995444433
No 21
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=9.3e-18 Score=112.75 Aligned_cols=77 Identities=23% Similarity=0.269 Sum_probs=68.5
Q ss_pred CCCceEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 6 ISESVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l-~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
.+++|+|+||+..+..++.+ +|++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i 76 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWA--LFDVRPECQRLFYRGKQLENGYT-----LFDYDVGLNDII 76 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHH--HSCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTCEE
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHH--HHCcChhhEEEEECCeECCCCCC-----HHHCCCCCCCEE
Confidence 34779999999988444889 59999999999999999 99999999999999999998888 999999999999
Q ss_pred EEEec
Q 032588 85 IAAVK 89 (137)
Q Consensus 85 lv~~~ 89 (137)
++..+
T Consensus 77 ~l~~~ 81 (89)
T 1wy8_A 77 QLLVR 81 (89)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 54444
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=5.5e-18 Score=112.16 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=67.3
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
++|+|+||+..+.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|.+.
T Consensus 2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~i~~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 2 SHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKWSTLFLL 73 (85)
T ss_dssp -CEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TGGGTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 57999999998865 88999999999999999999 99999999999999999999888 999999999999554
Q ss_pred ec
Q 032588 88 VK 89 (137)
Q Consensus 88 ~~ 89 (137)
.+
T Consensus 74 ~r 75 (85)
T 3mtn_B 74 LR 75 (85)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 23
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.75 E-value=6.1e-18 Score=110.19 Aligned_cols=72 Identities=28% Similarity=0.473 Sum_probs=65.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~~ 89 (137)
|+|+||+ +++. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|||++|++|++...
T Consensus 5 m~i~vk~-~g~~-~~~~v~~~~tV~~LK~~i~~--~~~i~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDK-WEVNVAPESTVLQFKEAINK--ANGIPVANQRLIYSGKILKDDQT-----VESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHH--HhCCCHHHEEEEECCeEcCCCCC-----HHHcCCCCCCEEEEEEc
Confidence 9999999 6644 88999999999999999999 89999999999999999998888 99999999999966554
Q ss_pred C
Q 032588 90 P 90 (137)
Q Consensus 90 p 90 (137)
|
T Consensus 76 ~ 76 (77)
T 2bwf_A 76 Q 76 (77)
T ss_dssp C
T ss_pred C
Confidence 3
No 24
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=4e-18 Score=113.00 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=66.3
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
.+|+|+||+..+.. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|.+.
T Consensus 2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~ip~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 2 SHMRIVVKTLMGRT-IILEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIHNHSALYLL 73 (85)
T ss_dssp --CEEEEECGGGCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETBEECCTTCB-----TTTTTCCTTCEEEEE
T ss_pred CeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCeECCCCCC-----HHHCCCCCCCEEEEE
Confidence 57999999988765 88999999999999999999 99999999999999999999888 999999999999554
Q ss_pred ec
Q 032588 88 VK 89 (137)
Q Consensus 88 ~~ 89 (137)
.+
T Consensus 74 ~r 75 (85)
T 3n3k_B 74 LK 75 (85)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 25
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=6.7e-18 Score=116.10 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=68.0
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEE
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~-~~~d~~~L~~~~I~dg~tL 84 (137)
....|+|+||+.++ . +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+ .+ |++|||++|++|
T Consensus 12 ~~~~~~I~Vk~~~~-~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~~t-----L~~ygI~~gstl 82 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-Q-FTVEVDRTETVSSLKDKIHI--VENTPIKRMQLYYSGIELADDYRN-----LNEYGITEFSEI 82 (94)
T ss_dssp SSCCEEEEEECSSC-E-EEEEECTTCBHHHHHHHHHH--HSSSCTTTEEEEETTEEECCTTSB-----HHHHTCCTTEEE
T ss_pred CCCCEEEEEEcCCc-E-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEEEECCEECCCCccc-----HHHCCCCCCCEE
Confidence 35679999999877 3 88999999999999999999 999999999999999999988 78 999999999999
Q ss_pred EEEecC
Q 032588 85 IAAVKP 90 (137)
Q Consensus 85 lv~~~p 90 (137)
.+..++
T Consensus 83 ~lv~r~ 88 (94)
T 2kan_A 83 VVFLKS 88 (94)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 444443
No 26
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=5.4e-18 Score=118.55 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=69.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
+..|+|+||+.+|+. +.++|++++||.+||++|+. .+|+|+++|||+|+|+.|.|+.+ |.+|||++|++| +
T Consensus 21 ~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~g~ti~l 92 (106)
T 1ttn_A 21 GYECQLRLRLSTGKD-LKLVVRSTDTVFHMKRRLHA--AEGVEPGSQRWFFSGRPLTDKMK-----FEELKIPKDYVVQV 92 (106)
T ss_dssp CCSEEEEEEETTTEE-EEEEECTTSHHHHHHHHHHH--TTCCCSTTCEEEETTEECCTTSH-----HHHCCCSSSCEEEE
T ss_pred CCeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--HHCcCcccEEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 356999999988855 88999999999999999999 99999999999999999998888 999999999999 5
Q ss_pred EEecCC
Q 032588 86 AAVKPK 91 (137)
Q Consensus 86 v~~~p~ 91 (137)
+...|.
T Consensus 93 v~~~~~ 98 (106)
T 1ttn_A 93 IVSQPV 98 (106)
T ss_dssp ECCCSS
T ss_pred EEeCCC
Confidence 555554
No 27
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=9.8e-18 Score=116.52 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=67.5
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
...+|+|+||+. +.. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |.+|||++|++|.
T Consensus 22 ~~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gI~~g~~I~ 92 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEK-EEFAVPENSSVQQFKEEISK--RFKSHTDQLVLIFAGKILKDQDT-----LSQHGIHDGLTVH 92 (101)
T ss_dssp -CCCEEEEEECS-SCE-EEEEECSCCCHHHHHHHHHH--HHTCCGGGEEEEETTEEECTTCC-----TGGGTCCTTCEEE
T ss_pred CCCeEEEEEEeC-CcE-EEEEECCCCCHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHcCCCCCCEEE
Confidence 346799999998 544 88999999999999999999 99999999999999999998888 9999999999995
Q ss_pred EEecCC
Q 032588 86 AAVKPK 91 (137)
Q Consensus 86 v~~~p~ 91 (137)
+...+.
T Consensus 93 l~~~~~ 98 (101)
T 2klc_A 93 LVIKTQ 98 (101)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 554433
No 28
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.74 E-value=9.6e-18 Score=108.47 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=64.7
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
|+|+||+.++.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|||++|++|.+.
T Consensus 1 M~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~~i~~~~q~L~~~g~~L~d~~t-----L~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHLV 70 (76)
T ss_dssp CEEEEECTTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEEE
T ss_pred CEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEE
Confidence 789999988865 88999999999999999999 99999999999999999998888 999999999999443
No 29
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.1e-18 Score=116.53 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=66.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
+..|+|+||+.+++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+|++|++|.+
T Consensus 20 ~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~i~l 91 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 91 (98)
T ss_dssp --CCEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTCB-----SGGGTCCTTEEEEE
T ss_pred CCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HhCCChhHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence 467999999998866 89999999999999999999 99999999999999999999888 99999999999944
Q ss_pred E
Q 032588 87 A 87 (137)
Q Consensus 87 ~ 87 (137)
.
T Consensus 92 ~ 92 (98)
T 4hcn_B 92 V 92 (98)
T ss_dssp E
T ss_pred E
Confidence 3
No 30
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.4e-17 Score=111.30 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=68.5
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
..+|+|+||+..+.. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|++
T Consensus 5 ~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~qrL~~~Gk~L~d~~t-----L~~~~i~~g~~i~l 76 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGS-YAYAINPNSFILGLKQQIED--QQGLPKKQQQLEFQGQVLQDWLG-----LGIYGIQDSDTLIL 76 (87)
T ss_dssp SSSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHHH--HTCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTEEEEE
T ss_pred CCCEEEEEEcCCCCE-EEEEeCCCChHHHHHHHHHH--HhCCChHHEEEEECCEEccCCCC-----HHHCCCCCCCEEEE
Confidence 467999999988754 88999999999999999999 99999999999999999998888 99999999999955
Q ss_pred EecC
Q 032588 87 AVKP 90 (137)
Q Consensus 87 ~~~p 90 (137)
..+.
T Consensus 77 ~~~~ 80 (87)
T 1wh3_A 77 SKKK 80 (87)
T ss_dssp EECS
T ss_pred EEec
Confidence 4443
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.74 E-value=1.4e-17 Score=107.67 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~~ 89 (137)
|+|+||+.++.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|++...
T Consensus 1 M~i~vk~~~g~~-~~i~v~~~~tv~~lK~~i~~--~~~i~~~~q~L~~~g~~L~d~~t-----L~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEEEe
Confidence 789999988865 88999999999999999999 99999999999999999998888 99999999999955443
No 32
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=7e-18 Score=116.51 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=66.7
Q ss_pred CCCceEEEEEeCCCCCcE-EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 6 ISESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~-~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
.+++|+|+||+. + ..+ .++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+ + |++|||++|++|
T Consensus 4 ~~~~m~i~Vk~~-g-~~~~~l~v~~~~TV~~lK~~I~~--~tgip~~~QkLi~~Gk~L~D~-t-----L~~~~I~~g~~i 73 (96)
T 1wgg_A 4 GSSGYSVTVKWG-K-EKFEGVELNTDEPPMVFKAQLFA--LTGVQPARQKVMVKGGTLKDD-D-----WGNIKMKNGMTV 73 (96)
T ss_dssp CCCEEEEEEEET-T-EEEEEEEEESSSCHHHHHHHHHH--HTCCCTTTSCCEETTEECCSS-C-----CCSCCCCSSCEE
T ss_pred CCcEEEEEEEEC-C-EEEEEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCcCCCCC-C-----HHHCCCCCCCEE
Confidence 357899999974 4 348 5999999999999999999 999999999999999999988 8 999999999999
Q ss_pred EEEecCC
Q 032588 85 IAAVKPK 91 (137)
Q Consensus 85 lv~~~p~ 91 (137)
+++..+.
T Consensus 74 ~l~~~~~ 80 (96)
T 1wgg_A 74 LMMGSAD 80 (96)
T ss_dssp ECCCCCC
T ss_pred EEEecch
Confidence 6665443
No 33
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8.7e-18 Score=120.86 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=72.4
Q ss_pred CceEEEEE-eCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 8 ESVEITVK-TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 8 ~~m~I~VK-t~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
..|+|+|+ +.++.. +.+++++++||++||++++. ..++|+++|||||.||+|+|+.+ |.+|||++|++| |
T Consensus 14 ~~itvkv~l~~~~~k-~tv~v~~d~TV~dLKe~ls~--~~~iP~e~qrLIy~GKiLKD~eT-----L~~~gIk~g~TIhL 85 (118)
T 2daf_A 14 SLATVKVVLIPVGQE-IVIPFKVDTILKYLKDHFSH--LLGIPHSVLQIRYSGKILKNNET-----LVQHGVKPQEIVQV 85 (118)
T ss_dssp SCEEEEEEETTTCCE-EEEEECSSSCSHHHHHHHHH--HHTCCTTTEEEEETTEEECSSCC-----HHHHSCCSSCEEEE
T ss_pred ccEEEEEEEcCCCcE-EEEEeCCCCcHHHHHHHHHh--hhCCChHHEEEEECCeEcCCcch-----HHHcCCCCCCEEEE
Confidence 45888888 444444 89999999999999999999 89999999999999999999999 999999999999 8
Q ss_pred EEecCCCCCcccc
Q 032588 86 AAVKPKPPPRHLR 98 (137)
Q Consensus 86 v~~~p~~~~~~~~ 98 (137)
|+....|-...++
T Consensus 86 vi~s~~p~~~p~~ 98 (118)
T 2daf_A 86 EIFSTNPDLYPVR 98 (118)
T ss_dssp EEEESCTTTSCCC
T ss_pred EEecCCCccCcce
Confidence 8877666655555
No 34
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.5e-17 Score=120.05 Aligned_cols=78 Identities=22% Similarity=0.328 Sum_probs=69.4
Q ss_pred CCCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032588 3 MGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (137)
Q Consensus 3 ~~~~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~ 82 (137)
|.++..+|+|+||+. +.. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+|++|+
T Consensus 26 ~~~~~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dygI~~gs 96 (125)
T 1j8c_A 26 APAEPKIIKVTVKTP-KEK-EEFAVPENSSVQQFKEAISK--RFKSQTDQLVLIFAGKILKDQDT-----LIQHGIHDGL 96 (125)
T ss_dssp CCCCCCCEEEEEECS-SCE-EEEEECTTCCHHHHHHHHHH--HHCSCSSSEEEEETTEEESTTSC-----GGGTTCSSSE
T ss_pred ccCCCCcEEEEEEeC-CeE-EEEEECCCCcHHHHHHHHHH--HHCcCcceEEEEECCEEcCCCCC-----HHHcCCCCCC
Confidence 555667899999998 544 88999999999999999999 99999999999999999998888 9999999999
Q ss_pred EEEEEec
Q 032588 83 SVIAAVK 89 (137)
Q Consensus 83 tLlv~~~ 89 (137)
+|++...
T Consensus 97 tI~lv~~ 103 (125)
T 1j8c_A 97 TVHLVIK 103 (125)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9954443
No 35
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.5e-17 Score=112.96 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=65.5
Q ss_pred CCceEEEEEeCCCCCcEEEEecCC-----CcHHHHHHHHHhccCCCCCCCceEEEecCeecCC-CCCCCCCCccccCCCC
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSP-----IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD-TQDDDDRDDVYLQLSN 80 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~-----~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D-~~~~d~~~L~~~~I~d 80 (137)
+.+|+|+||+. +.. +.++|+++ +||.+||++|++ .+|+|+++|||+|+|+.|+| +.+ |.+|+|++
T Consensus 5 ~~~~~v~Vk~~-~~~-~~i~v~~~~~~~~~TV~~LK~~i~~--~~gip~~~qrL~~~Gk~L~D~~~~-----L~~~~i~~ 75 (92)
T 1wxv_A 5 SSGLTVTVTHS-NEK-HDLHVTSQQGSSEPVVQDLAQVVEE--VIGVPQSFQKLIFKGKSLKEMETP-----LSALGIQD 75 (92)
T ss_dssp CSSEEEEEECS-SSE-EEEEECCCSSSSSCBHHHHHHHHHH--HTCCCTTTCEEEETTEEECCSSSB-----HHHHTCCS
T ss_pred CCeEEEEEEEC-CEE-EEEEECCCcCcccCcHHHHHHHHHH--HHCcCHHHEEEEECCeecCCCccc-----HHHCCCCC
Confidence 46799999994 433 78999995 999999999999 99999999999999999987 446 99999999
Q ss_pred CCEEEEEecCC
Q 032588 81 GDSVIAAVKPK 91 (137)
Q Consensus 81 g~tLlv~~~p~ 91 (137)
|++|++...+.
T Consensus 76 g~~i~l~~~~~ 86 (92)
T 1wxv_A 76 GCRVMLIGKKN 86 (92)
T ss_dssp SEEEEEESCCS
T ss_pred CCEEEEEecCC
Confidence 99996655544
No 36
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=1.4e-17 Score=115.76 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=67.1
Q ss_pred CCceEEEEEeCCCC---CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCC
Q 032588 7 SESVEITVKTIGPA---PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGD 82 (137)
Q Consensus 7 ~~~m~I~VKt~~~~---~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~-~~~d~~~L~~~~I~dg~ 82 (137)
+.+|+|+|++..+. ..+.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+ .+ |++|+|++|+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~gk~L~D~~~t-----L~~ygI~~g~ 77 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCEL--ESGVPAEEAQIVYMEQLLTDDHCS-----LGSYGLKDGD 77 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHH--HTCCCGGGBCEEETTEEECCSSSB-----HHHHTCCTTE
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHH--HHCcChHHeEEEECCEECCCCccc-----HHHCCCCCCC
Confidence 35699999997654 4588999999999999999999 999999999999999999877 46 9999999999
Q ss_pred EEEEEec
Q 032588 83 SVIAAVK 89 (137)
Q Consensus 83 tLlv~~~ 89 (137)
+|++...
T Consensus 78 ~l~l~~~ 84 (102)
T 1v5o_A 78 MVVLLQK 84 (102)
T ss_dssp EEEECBC
T ss_pred EEEEEEC
Confidence 9966554
No 37
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1.7e-17 Score=116.24 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=65.0
Q ss_pred CceEEEEEeCCC---CCcEEEEecC---------CCcHHHHHHHHHhccCC--CCCCCc-eEEEecCeecCCCCCCCCCC
Q 032588 8 ESVEITVKTIGP---APPSRLSVSS---------PIKVRDLRKLIATSSAN--HLPIEN-LRLVFRGKVLDDTQDDDDRD 72 (137)
Q Consensus 8 ~~m~I~VKt~~~---~~~~~l~v~~---------~~TV~dLK~~Ia~~~~~--~ip~e~-qRLi~~Gk~L~D~~~~d~~~ 72 (137)
..|+|+||+.++ .. +.|+|++ ++||.+||++|++ .+ ++|+++ |||+|+|+.|+|+.+
T Consensus 11 ~~~~i~Vk~~~~~~~~~-~~l~v~~~~~~~v~~~~~TV~~LK~~i~~--~~~~gip~~~~qrLi~~Gk~L~D~~t----- 82 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPK-SILQLPETELGEYSLGGYSISFLKQLIAG--KLQESVPDPELIDLIYCGRKLKDDQT----- 82 (107)
T ss_dssp CSCCEEEEETTCTTSCC-EEECCCCCSSCSSCCCCCBHHHHHHHHHH--HCTTTCCCSSSEEEEETTEECCTTCB-----
T ss_pred CceEEEEEeCCCCCccE-EEEEecCccccccCcccCCHHHHHHHHHH--HhccCCChhhcEEEEECCeECCCCCc-----
Confidence 459999999887 45 7888554 5999999999999 88 999999 999999999999888
Q ss_pred ccccCCCCCCEEEEEecC
Q 032588 73 DVYLQLSNGDSVIAAVKP 90 (137)
Q Consensus 73 L~~~~I~dg~tLlv~~~p 90 (137)
|.+|+|++|++|.+...+
T Consensus 83 L~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 83 LDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp HHHHTCCTTCEEEEEESS
T ss_pred HHHcCCCCCCEEEEEeCC
Confidence 999999999999444433
No 38
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.72 E-value=2.4e-17 Score=112.13 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=65.8
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~ 88 (137)
|+|+||+.++.. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|++..
T Consensus 2 m~i~vk~~~g~~-~~~~v~~~~TV~~LK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 2 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 72 (96)
T ss_dssp CEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEE
T ss_pred cEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHh--hhCCChhHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 899999998865 88999999999999999999 99999999999999999999888 9999999999994444
No 39
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.72 E-value=3.5e-17 Score=112.32 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~~ 89 (137)
|+|+||+.++.. +.++|++++||++||++|++ .+++|+++|||+|+|+.|.|+.+ |++|||++|++|.+..+
T Consensus 1 M~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~gi~~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HTCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEEEe
Confidence 789999988865 88999999999999999999 99999999999999999998888 99999999999944433
No 40
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.9e-17 Score=111.97 Aligned_cols=71 Identities=17% Similarity=0.328 Sum_probs=66.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~ 88 (137)
|+|+||+.+++. +.++|++++||++||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|.+..
T Consensus 10 ~~i~v~~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 10 LQLFIKTLTGKT-FTVEMEPSDTIENLKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 80 (88)
T ss_dssp CEEEEEETTSCE-EEEECCTTSBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----SGGGTCCTTCEEEEEC
T ss_pred eEEEEEeCCCCE-EEEEECCCChHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 899999999966 88999999999999999999 99999999999999999998888 9999999999995443
No 41
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.72 E-value=1.2e-17 Score=109.95 Aligned_cols=72 Identities=17% Similarity=0.361 Sum_probs=66.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
+.|+|+||+..++. +.++|.+++||.+||++|++ ..|+|+++|||+|.|+.|.|+.+ +++|+|++|++| ++
T Consensus 2 ~~m~i~vk~~~g~~-~~~~v~~~~tv~~lk~~i~~--~~gi~~~~qrL~~~G~~L~d~~t-----l~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 2 EYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEVY 73 (79)
T ss_dssp CEEEEEEECTTCCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----HHHHTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HHCCCcccEEEEECCEEeCCCCC-----HHHcCCCCCCEEEEE
Confidence 36999999998865 88999999999999999999 99999999999999999999888 999999999999 44
Q ss_pred E
Q 032588 87 A 87 (137)
Q Consensus 87 ~ 87 (137)
.
T Consensus 74 ~ 74 (79)
T 2uyz_B 74 Q 74 (79)
T ss_dssp E
T ss_pred E
Confidence 3
No 42
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=3.6e-17 Score=111.68 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=65.8
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEE
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~-~~~d~~~L~~~~I~dg~tL 84 (137)
..++|+|+||+..+.. +.++|+++.||.+||++|++ .. +++|||+|+|+.|.|+ .+ |.+|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~~g~~-~~~~v~~~~TV~~LK~~i~~--~~---~~~qrLi~~Gk~L~D~~~t-----L~~y~i~~g~~i 72 (95)
T 1wia_A 4 GSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKYFP--GQ---ESQMKLIYQGRLLQDPART-----LSSLNITNNCVI 72 (95)
T ss_dssp CCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHSS--ST---TTTCEEEETTEECCCSSCB-----TTTTTCCTTEEE
T ss_pred CCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHh--hC---cCcEEEEECCEEccCCcCC-----HHHcCCCCCCEE
Confidence 3467999999988865 88999999999999999987 65 9999999999999988 78 999999999999
Q ss_pred -EEEecCC
Q 032588 85 -IAAVKPK 91 (137)
Q Consensus 85 -lv~~~p~ 91 (137)
++...|.
T Consensus 73 ~l~~~~~~ 80 (95)
T 1wia_A 73 HCHRSPPG 80 (95)
T ss_dssp EEECCCCC
T ss_pred EEEECCCC
Confidence 5555554
No 43
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.5e-17 Score=113.60 Aligned_cols=76 Identities=25% Similarity=0.327 Sum_probs=67.6
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
.+.+|+|+||+. +. .+.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+|++|++|+
T Consensus 14 ~~~~m~i~Vk~~-g~-~~~~~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~ 84 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QD-CHEFFLAENSNVRRFKKQISK--YLHCNADRLVLIFTGKILRDQDI-----LSQRGILDGSTVH 84 (96)
T ss_dssp CSCEEEEEEECS-SS-EEEEEEETTCCHHHHHHHHHH--HTCSCTTTBCCEETTEECCTTSC-----HHHHTCCTTEEEE
T ss_pred CCCcEEEEEEEC-Ce-EEEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEECCCcCC-----HHHCCCCCCCEEE
Confidence 346799999998 54 488999999999999999999 99999999999999999998888 9999999999995
Q ss_pred EEecC
Q 032588 86 AAVKP 90 (137)
Q Consensus 86 v~~~p 90 (137)
+...+
T Consensus 85 l~~~~ 89 (96)
T 1wx8_A 85 VVVRS 89 (96)
T ss_dssp CCBCC
T ss_pred EEEeC
Confidence 54443
No 44
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.71 E-value=3.7e-17 Score=115.33 Aligned_cols=72 Identities=21% Similarity=0.326 Sum_probs=66.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
.+|+|+||+..++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|.+.
T Consensus 34 ~~m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 34 LAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 105 (111)
T ss_dssp GCEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TTTTTCCTTCEEEEE
T ss_pred ccEEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HhCCChHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence 46999999998865 88999999999999999999 99999999999999999999888 999999999999443
No 45
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.71 E-value=1.7e-17 Score=112.90 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=67.3
Q ss_pred CCceEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCeecCCCCCCCCCCccccCCCCCC
Q 032588 7 SESVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l-~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi---~~Gk~L~D~~~~d~~~L~~~~I~dg~ 82 (137)
.++|+|+||+ +++ ++.| +|++++||.+||++|++ .+|+|+++|||+ |+|+.|+|+.+ |++|+|++|+
T Consensus 5 ~~~m~i~Vk~-~g~-~~~i~~v~~~~TV~~lK~~I~~--~~gip~~~QkLi~~k~~Gk~L~D~~~-----L~~~~i~~g~ 75 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQ-EYSVTTLSEDDTVLDLKQFLKT--LTGVLPERQKLLGLKVKGKPAENDVK-----LGALKLKPNT 75 (90)
T ss_dssp CCSCCEEEEE-TTE-EEEECSCCSSSBHHHHHHHHHH--HTCCCTTTCEEESCEETTEECCTTSB-----HHHHTCCTTE
T ss_pred CceEEEEEEE-CCE-EEEEEEeCCCCCHHHHHHHHHH--HHCcCHHHeEEEeeccCCcCcCCCCC-----HHHcCCCCCC
Confidence 4579999998 443 3789 99999999999999999 999999999999 99999998888 9999999999
Q ss_pred EEEEEecCC
Q 032588 83 SVIAAVKPK 91 (137)
Q Consensus 83 tLlv~~~p~ 91 (137)
+|+++..+.
T Consensus 76 ~l~l~~~~~ 84 (90)
T 1v5t_A 76 KIMMMGTRE 84 (90)
T ss_dssp EEEEECCCS
T ss_pred EEEEEecCc
Confidence 996666554
No 46
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=5.1e-17 Score=113.31 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=67.9
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 5 ~~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
+...+|+|+||+.++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+|++|++|
T Consensus 13 ~~~~~m~I~Vk~~~g~--~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gi~~g~~i 83 (106)
T 1wx7_A 13 QDPHLIKVTVKTPKDK--EDFSVTDTCTIQQLKEEISQ--RFKAHPDQLVLIFAGKILKDPDS-----LAQCGVRDGLTV 83 (106)
T ss_dssp CCSSEEEEEEECSSCE--EEEEEETTCCHHHHHHHHHH--HHTCCTTTEEEEETTEECCTTSC-----HHHHTCCTTEEE
T ss_pred CCCceEEEEEEeCCCc--EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHcCCCCCCEE
Confidence 3457799999998773 68999999999999999999 99999999999999999998888 999999999999
Q ss_pred EEEec
Q 032588 85 IAAVK 89 (137)
Q Consensus 85 lv~~~ 89 (137)
++..+
T Consensus 84 ~l~~~ 88 (106)
T 1wx7_A 84 HLVIK 88 (106)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 55443
No 47
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.70 E-value=2.8e-17 Score=113.25 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=67.6
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
+..|+|+||+..++. +.+.|.+++||.+||++|++ ..|+|+++|||+|.|+.|.|+.+ |++|+|++|++| +
T Consensus 19 ~~~m~I~Vk~~~g~~-~~l~v~~~~tv~~lK~~i~~--~~gip~~~qrLif~Gk~L~d~~t-----l~dy~i~~g~~I~l 90 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEV 90 (97)
T ss_dssp CCEEEEEEECTTCCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----HHHHTCCTTCEEEE
T ss_pred CCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCChhhEEEEECCeEcCCCCC-----HHHCCCCCCCEEEE
Confidence 456999999998865 88999999999999999999 99999999999999999999888 999999999999 5
Q ss_pred EE
Q 032588 86 AA 87 (137)
Q Consensus 86 v~ 87 (137)
+.
T Consensus 91 ~~ 92 (97)
T 1wyw_B 91 YQ 92 (97)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 48
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.8e-18 Score=117.90 Aligned_cols=73 Identities=29% Similarity=0.504 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
-+|+|+||+ +++. +.++|++++||++||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|||++|++| ++
T Consensus 27 m~i~I~Vk~-~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~gI~~g~tI~lv 97 (101)
T 3m63_B 27 MSLNIHIKS-GQDK-WEVNVAPESTVLQFKEAINK--ANGIPVANQRLIYSGKILKDDQT-----VESYHIQDGHSVHLV 97 (101)
T ss_dssp --CCEEEEC-SSCC-CCBCCCTTSBHHHHHHHHHH--HHSCCSTTCCEEETTEECCTTSB-----TTTTTCCTTEEEEEC
T ss_pred cEEEEEEEE-CCEE-EEEEeCCCCCHHHHHHHHHH--HHCcChHHEEEEECCEECCCcCc-----HHHCCCCCCCEEEEE
Confidence 358899998 5544 78999999999999999999 99999999999999999999888 999999999999 54
Q ss_pred Eec
Q 032588 87 AVK 89 (137)
Q Consensus 87 ~~~ 89 (137)
...
T Consensus 98 ~~~ 100 (101)
T 3m63_B 98 KSQ 100 (101)
T ss_dssp CCC
T ss_pred eCC
Confidence 443
No 49
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=115.43 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=62.0
Q ss_pred CCceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccC-CCC-CCCceEEEecCeecCCCCCCCCCCcccc--CCCCC
Q 032588 7 SESVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSA-NHL-PIENLRLVFRGKVLDDTQDDDDRDDVYL--QLSNG 81 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~-~~~l~v~~~~TV~dLK~~Ia~~~~-~~i-p~e~qRLi~~Gk~L~D~~~~d~~~L~~~--~I~dg 81 (137)
...|+|+||+.+++. .+.+++++++||.+||++|++ . .|. |+++|||||+||.|+|+.+ |++| +|++|
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~--~~~g~pp~~~QrLIy~Gk~L~D~~t-----L~~y~~~I~~~ 93 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSN--VYPSKPLTKDQRLVYSGRLLPDHLQ-----LKDILRKQDEY 93 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHH--HSTTCCCTTTCCEEETTEEECTTSB-----THHHHTTTCSE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHH--HhcCCCChhhEEEEECCEECCCCCC-----HHHHhcCCCCC
Confidence 356999999988863 378899999999999999997 5 344 4699999999999999988 9999 99999
Q ss_pred CEEE
Q 032588 82 DSVI 85 (137)
Q Consensus 82 ~tLl 85 (137)
++|.
T Consensus 94 ~tih 97 (99)
T 2kdb_A 94 HMVH 97 (99)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 9993
No 50
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.70 E-value=4.6e-17 Score=122.85 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=66.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~~ 88 (137)
|+|+||+.+|+. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++| ++..
T Consensus 1 MqI~Vk~~~Gk~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCTTTEEEEETTEECCTTSB-----GGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCcCHHHEEEEECCccccCcCc-----HHHcCCCCCCEEEEEEE
Confidence 789999998866 88999999999999999999 99999999999999999999888 999999999999 5544
No 51
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8e-17 Score=109.82 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=64.4
Q ss_pred ceEEEEEeCCCCCcE-EE-EecCCCcHHHHHHHHHhccC-CCCCCCceEEEec--CeecCCCCCCCCCCccccCCCCCCE
Q 032588 9 SVEITVKTIGPAPPS-RL-SVSSPIKVRDLRKLIATSSA-NHLPIENLRLVFR--GKVLDDTQDDDDRDDVYLQLSNGDS 83 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~-~l-~v~~~~TV~dLK~~Ia~~~~-~~ip~e~qRLi~~--Gk~L~D~~~~d~~~L~~~~I~dg~t 83 (137)
+|+|+||+..++... .| +|++++||.+||++|++ . .++||++|||+|. |++|+|+.+ |++|+|++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~--~~~~i~~~~QrL~~~~~Gk~L~D~~t-----L~~y~i~~~st 82 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTK--THPQWYPARQSLRLDPKGKSLKDEDV-----LQKLPVGTTAT 82 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHH--HCSSSCTTTCCEESSTTSCCCCTTCB-----TTTSSCCSEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHH--HhcCCChHHeEEEecCCCcCcCCCCC-----HHHcCCCCCCE
Confidence 499999999887643 58 99999999999999997 5 7999999999976 999999888 99999999999
Q ss_pred EEEE
Q 032588 84 VIAA 87 (137)
Q Consensus 84 Llv~ 87 (137)
|+++
T Consensus 83 l~~K 86 (88)
T 2dzj_A 83 LYFR 86 (88)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9774
No 52
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=1.5e-16 Score=111.82 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=67.9
Q ss_pred CceEEEEEeC---CCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032588 8 ESVEITVKTI---GPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (137)
Q Consensus 8 ~~m~I~VKt~---~~~~~~~l~v~~-~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~t 83 (137)
+.|+|+|++. .+.. +.++|++ ++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++
T Consensus 26 ~~i~i~Vk~~~~~~g~~-~~l~v~~l~~TV~~LK~~I~~--~~gip~~~QrL~~~Gk~L~D~~t-----L~~y~I~~g~~ 97 (111)
T 1we6_A 26 GPATIRVSKPNENDGQF-MEITVQSLSENVGSLKEKIAG--EIQIPANKQKLSGKAGFLKDNMS-----LAHYNVGAGEI 97 (111)
T ss_dssp SCEEEEECCTTCSSSCC-EEEEESCSSSBHHHHHHHHHH--HTTCCTTTSEEECSSSBCCTTSB-----TTTTTCSSSCE
T ss_pred CcEEEEEEecccCCCcE-EEEEecCCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEECCCCCc-----HHHCCCCCCCE
Confidence 5699999998 5644 8899998 9999999999999 99999999999999999999888 99999999999
Q ss_pred EEEEecCC
Q 032588 84 VIAAVKPK 91 (137)
Q Consensus 84 Llv~~~p~ 91 (137)
|++..+..
T Consensus 98 l~l~~r~~ 105 (111)
T 1we6_A 98 LTLSLRER 105 (111)
T ss_dssp EEEECSSC
T ss_pred EEEEEEcC
Confidence 95555433
No 53
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=118.34 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=68.5
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
..+|+|+||+.+++. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |.+|||++|++| +
T Consensus 18 ~~~m~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~QrL~~~g~~L~d~~t-----L~~~~i~~~~~l~l 89 (172)
T 3u30_A 18 GSHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 89 (172)
T ss_dssp -CCEEEEEEETTTEE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TGGGTCCTTCEEEE
T ss_pred CCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCccccccCC-----HhHcCCcccceeee
Confidence 457999999998866 88999999999999999999 99999999999999999999888 999999999999 5
Q ss_pred EEecC
Q 032588 86 AAVKP 90 (137)
Q Consensus 86 v~~~p 90 (137)
+...+
T Consensus 90 ~~~~~ 94 (172)
T 3u30_A 90 VLRLR 94 (172)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 44444
No 54
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=3.4e-16 Score=112.20 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=65.2
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc----CCC--CCCCceEEEecCeecCCCCCCCCCCccccCCC
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS----ANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLS 79 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~----~~~--ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~ 79 (137)
..+.|+|+||+..|.. +.++|++++||.+||++|++.- +.+ +|+++|||||.||.|+|+.+ |++|+|+
T Consensus 13 ~~~~m~I~vKtl~G~t-~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~T-----L~~y~I~ 86 (116)
T 1wgh_A 13 PADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVT-----LGALKLP 86 (116)
T ss_dssp CSSSEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCB-----TTTTTCC
T ss_pred CCCeEEEEEEeCCCCE-EEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCc-----HHHcCCC
Confidence 4567999999998855 9999999999999999999711 224 47999999999999999999 9999998
Q ss_pred CCCE--EEEEecCC
Q 032588 80 NGDS--VIAAVKPK 91 (137)
Q Consensus 80 dg~t--Llv~~~p~ 91 (137)
.|+. |.+...+.
T Consensus 87 ~~~~~tlhLvlr~~ 100 (116)
T 1wgh_A 87 FGKTTVMHLVARET 100 (116)
T ss_dssp SSCEEEEEEEECSS
T ss_pred CCCceEEEEEccCC
Confidence 8864 43333443
No 55
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.68 E-value=3.1e-16 Score=114.02 Aligned_cols=73 Identities=15% Similarity=0.270 Sum_probs=63.4
Q ss_pred CCCCCceEEEEEeCCCCCcE-EEEecCCCcHHHHHHHHHh---ccCCCCCC--CceEEEecCeecCCCCCCCCCCccccC
Q 032588 4 GEISESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIAT---SSANHLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQ 77 (137)
Q Consensus 4 ~~~~~~m~I~VKt~~~~~~~-~l~v~~~~TV~dLK~~Ia~---~~~~~ip~--e~qRLi~~Gk~L~D~~~~d~~~L~~~~ 77 (137)
++..+.|+|+||+..|+. + .+++++++||.+||++|+. ..+.++|+ ++|||||+||+|+|+.+ |++|+
T Consensus 11 ~~~~~~~~i~~kt~~G~~-i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~T-----Lsdy~ 84 (126)
T 1se9_A 11 AEVHNQLEIKFRLTDGSD-IGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKT-----VKDYR 84 (126)
T ss_dssp CSSCCCEEEEEEETTSCE-EEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSB-----GGGGS
T ss_pred hhhcccEEEEEEECCCCE-EEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCc-----HHHcC
Confidence 445688999999999976 6 6999999999999999942 01668886 89999999999999999 99999
Q ss_pred CCCCC
Q 032588 78 LSNGD 82 (137)
Q Consensus 78 I~dg~ 82 (137)
|++|+
T Consensus 85 I~~~~ 89 (126)
T 1se9_A 85 SPVSN 89 (126)
T ss_dssp CCTTS
T ss_pred CCcCC
Confidence 99995
No 56
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.68 E-value=9.9e-17 Score=118.06 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=66.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-e-cCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-F-RGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi-~-~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
|+|+||+.+++. +.++|++++||.+||++|++ .+|+|+++|||+ | +|+.|+|+.+ |++|||++|++|.+.
T Consensus 3 m~i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~QrL~~~~~g~~L~d~~t-----L~~y~i~~~~~l~l~ 74 (159)
T 3rt3_B 3 WDLTVKMLAGNE-FQVSLSSSMSVSELKAQITQ--KIGVHAFQQRLAVHPSGVALQDRVP-----LASQGLGPGSTVLLV 74 (159)
T ss_dssp CEEEEEETTSCE-EEEECCTTCCHHHHHHHHHH--HHCCCGGGEEEEEETTCCBCCTTSC-----GGGGTCCTTCEEEEE
T ss_pred eEEEEEECCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCCHHHEEEEEcCCCCCCCCCCC-----HHHcCCCCCCEEEEE
Confidence 899999998866 89999999999999999999 999999999999 9 7999998888 999999999999544
Q ss_pred ec
Q 032588 88 VK 89 (137)
Q Consensus 88 ~~ 89 (137)
..
T Consensus 75 ~~ 76 (159)
T 3rt3_B 75 VD 76 (159)
T ss_dssp EC
T ss_pred cc
Confidence 44
No 57
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.50 E-value=3.1e-18 Score=111.70 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=64.5
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
|+|+||+.++.. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|||++|++|.+.
T Consensus 1 M~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 1 MIVFVRFNSSYG-FPVEVDSDTSILQLKEVVAK--QQGVPADQLRVIFAGKELPNHLT-----VQNCDLEQQSIVHIV 70 (76)
Confidence 789999988865 78999999999999999998 99999999999999999998888 999999999999443
No 58
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=8e-17 Score=110.16 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=62.7
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
...|+|+||+ + ..+.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|.+
T Consensus 17 ~~~m~I~Vk~--g-~~~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~y~I~~gstI~l 86 (93)
T 2l7r_A 17 RGSMQLFVRA--Q-ELHTFEVTGQETVAQIKAHVAS--LEGIAPEDQVVLLAGAPLEDEAT-----LGQCGVEALTTLEV 86 (93)
T ss_dssp ---CEEEEES--S-SEEEEECCSSCBHHHHHHHHHH--HHTCCGGGCEEEETTEECCTTSB-----HHHHTCCSSCEEEE
T ss_pred CCcEEEEEEC--C-CEEEEEeCCCCcHHHHHHHHHH--HhCcChhHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence 3569999999 4 3488999999999999999999 99999999999999999998888 99999999999944
Q ss_pred E
Q 032588 87 A 87 (137)
Q Consensus 87 ~ 87 (137)
.
T Consensus 87 v 87 (93)
T 2l7r_A 87 A 87 (93)
T ss_dssp E
T ss_pred E
Confidence 3
No 59
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=110.72 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=66.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
.+|+|+||+..+.. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|.+.
T Consensus 34 ~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gI~~gs~I~l~ 105 (111)
T 2ojr_A 34 LAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 105 (111)
T ss_dssp SCEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCTTTEEEEETTEECCSSCB-----TTTTTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCcCcccEEEEECCEECCCCCc-----HHHcCCCCCCEEEEE
Confidence 57999999988755 88999999999999999999 99999999999999999998888 999999999999544
Q ss_pred e
Q 032588 88 V 88 (137)
Q Consensus 88 ~ 88 (137)
.
T Consensus 106 ~ 106 (111)
T 2ojr_A 106 L 106 (111)
T ss_dssp E
T ss_pred E
Confidence 3
No 60
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=4e-16 Score=110.67 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
+..+|+||+..++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|.+.
T Consensus 8 ~~~~i~vk~l~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 8 GEFQIFAKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIWAGKQLEDGRT-----LSDYNIQRESTLHLV 79 (114)
T ss_dssp CCCEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TTTTTCCSSCEEEEE
T ss_pred CcEEEEEEeCCCcE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence 45899999999965 88999999999999999999 99999999999999999998888 999999999999444
Q ss_pred ec
Q 032588 88 VK 89 (137)
Q Consensus 88 ~~ 89 (137)
..
T Consensus 80 ~~ 81 (114)
T 2kdi_A 80 LR 81 (114)
T ss_dssp EC
T ss_pred EE
Confidence 43
No 61
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=4.5e-17 Score=114.99 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=64.6
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC---------------ceEEEecCeecC-CCCCCCCC
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE---------------NLRLVFRGKVLD-DTQDDDDR 71 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e---------------~qRLi~~Gk~L~-D~~~~d~~ 71 (137)
..|+|+||+..++. +.|+|++++||.+||++|++ +.++|++ +|||||.|+.|. |+.+
T Consensus 6 ~~M~I~Vk~l~g~~-~~v~V~~~~TV~dLK~~I~~--~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~t---- 78 (105)
T 1v2y_A 6 SGMTVRVCKMDGEV-MPVVVVQNATVLDLKKAIQR--YVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKK---- 78 (105)
T ss_dssp CSEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSB----
T ss_pred CcEEEEEEecCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCC----
Confidence 45999999999977 99999999999999999999 8888884 579999999997 4467
Q ss_pred CccccCCCCCCEE-EEEe
Q 032588 72 DDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 72 ~L~~~~I~dg~tL-lv~~ 88 (137)
|++|||++|++| +|+.
T Consensus 79 -L~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 79 -LRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp -HHHHTCCSSEEEEEEEC
T ss_pred -HHHcCCCCCCEEEEEeh
Confidence 999999999999 5544
No 62
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=6.7e-17 Score=111.15 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=64.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
..+|+|+||.. + ..+.++|++++||.+||++|++ .+++|+++|||+|+|+.| |+.+ |.+|+|++|++|++
T Consensus 15 ~~~~~i~Vk~~-g-~~~~i~v~~~~TV~~LK~~I~~--~tgip~~~QrL~~~Gk~L-dd~t-----L~~~~i~~g~~i~l 84 (95)
T 1v86_A 15 KELVDLKIIWN-K-TKHDVKVPLDSTGSELKQKIHS--ITGLPPAMQKVMYKGLVP-EDKT-----LREIKVTSGAKIMV 84 (95)
T ss_dssp CCCEEEEEEET-T-EEEEEEECTTSBHHHHHHHHHH--HHCSCSTTCCCBSSSBCC-SSSB-----HHHHCCCTTEEEEE
T ss_pred CceEEEEEEEC-C-EEEEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCeeC-CcCc-----HHHCCCCCCCEEEE
Confidence 35699999964 4 3478999999999999999999 999999999999999999 4447 99999999999966
Q ss_pred EecC
Q 032588 87 AVKP 90 (137)
Q Consensus 87 ~~~p 90 (137)
+..+
T Consensus 85 v~~~ 88 (95)
T 1v86_A 85 VGST 88 (95)
T ss_dssp CCSS
T ss_pred Eecc
Confidence 5544
No 63
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.66 E-value=2.2e-16 Score=106.39 Aligned_cols=74 Identities=26% Similarity=0.392 Sum_probs=63.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
+++.+.++. +++. +.++|++++||++||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|||++|++|++.
T Consensus 11 ~~~~~~~~~-~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 11 STIKLTVKF-GGKS-IPLSVSPDCTVKDLKSQLQP--ITNVLPRGQKLIFKGKVLVETST-----LKQSDVGSGAKLMLM 81 (85)
T ss_dssp CCEEEEEEE-TTEE-EEEEECTTSBHHHHHHHHHH--HHCCCTTTCEEEETTEECCTTCB-----TTTTTCCTTEEEEEE
T ss_pred CcEEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCeECCCcCC-----HHHCCCCCCCEEEEE
Confidence 445555544 5544 78999999999999999999 99999999999999999998888 999999999999665
Q ss_pred ecC
Q 032588 88 VKP 90 (137)
Q Consensus 88 ~~p 90 (137)
..|
T Consensus 82 ~s~ 84 (85)
T 2kd0_A 82 ASQ 84 (85)
T ss_dssp CCC
T ss_pred EeC
Confidence 544
No 64
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.65 E-value=7.6e-16 Score=111.64 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=62.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc----CCCC--CCCceEEEecCeecCCCCCCCCCCccccCCCC
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS----ANHL--PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN 80 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~----~~~i--p~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~d 80 (137)
..+|.|+||+..|+. +.++|++++||.+||++|++.- +.++ ++++|||||.||.|+|+.+ |++|+|+.
T Consensus 15 ~~~m~I~vktl~G~~-~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~T-----L~~y~I~~ 88 (125)
T 2gow_A 15 ADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVT-----LGALKLPF 88 (125)
T ss_dssp TTCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCB-----TGGGCCCT
T ss_pred CCeEEEEEEeCCCCE-EEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCc-----HHHcCCCC
Confidence 356999999998854 9999999999999999998611 2456 5999999999999999999 99999998
Q ss_pred CCEE
Q 032588 81 GDSV 84 (137)
Q Consensus 81 g~tL 84 (137)
|+.+
T Consensus 89 ~~~~ 92 (125)
T 2gow_A 89 GKTT 92 (125)
T ss_dssp TSEE
T ss_pred CCce
Confidence 8843
No 65
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.65 E-value=5.6e-16 Score=109.48 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=65.6
Q ss_pred ceEEEEEeCCC-CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCCEE-E
Q 032588 9 SVEITVKTIGP-APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGDSV-I 85 (137)
Q Consensus 9 ~m~I~VKt~~~-~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I-~dg~tL-l 85 (137)
.|+|+|+...+ ..++.++|++++||++||++|++ +.|+||++|||+|+|+.++|+.+ |.+||| ++|+++ |
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~--k~Gipp~~QRli~ggkll~D~~T-----L~~ygI~~~G~t~hL 96 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFL--DYGFPPVLQQWVIGQRLARDQET-----LHSHGVRQNGDSAYL 96 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEEECTTCB-----TGGGTCCSTTCEEEE
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHH--HhCCCHHHEEEeccCeEccCcCc-----HHHcCCCCCCCEEEE
Confidence 48999999875 34588999999999999999999 99999999999999999988888 999999 599999 5
Q ss_pred EEec
Q 032588 86 AAVK 89 (137)
Q Consensus 86 v~~~ 89 (137)
++..
T Consensus 97 ~l~~ 100 (105)
T 4dbg_A 97 YLLS 100 (105)
T ss_dssp EECC
T ss_pred EEEe
Confidence 5543
No 66
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.65 E-value=9.8e-16 Score=110.77 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=66.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~~ 89 (137)
|+|+||+.+++. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|||++|++|.+...
T Consensus 1 M~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gip~~~q~L~~~g~~L~d~~t-----L~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChHHeEEEECCeECcCccc-----HHHhccCCCCeeEEEee
Confidence 789999988865 88999999999999999999 99999999999999999998888 99999999999955444
Q ss_pred C
Q 032588 90 P 90 (137)
Q Consensus 90 p 90 (137)
+
T Consensus 73 ~ 73 (152)
T 3b08_A 73 L 73 (152)
T ss_dssp C
T ss_pred c
Confidence 3
No 67
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.65 E-value=5.1e-16 Score=114.23 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=67.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
.+.|+|+||+..|+. +.++|+++.||.+||++|++ ..|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.+
T Consensus 79 ~~~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~q~L~~~G~~L~d~~t-----L~~y~i~~g~~l~l 150 (159)
T 3rt3_B 79 DEPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFM 150 (159)
T ss_dssp CCCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEE
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCCCHHHEEEEECCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 456999999998866 88999999999999999999 99999999999999999999888 99999999999944
Q ss_pred E
Q 032588 87 A 87 (137)
Q Consensus 87 ~ 87 (137)
.
T Consensus 151 ~ 151 (159)
T 3rt3_B 151 N 151 (159)
T ss_dssp E
T ss_pred E
Confidence 3
No 68
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.64 E-value=2e-16 Score=113.84 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=62.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCC-------CCC
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLS-------NGD 82 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~-------dg~ 82 (137)
|+++|+...++.++.++|.++.||.+||++|+. +.|+|+++|||||.|+.|+|+.+ |++|||+ +++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~--~egIP~~qQrLi~~Gk~LeD~~T-----Lsdy~I~~~~a~~q~~s 73 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEG--ILKRPPEEQRLYKDDQLLDDGKT-----LGECGFTSQTARPQAPA 73 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----HHHHTCCTTTSBTTBCE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHH--HhCCCHHHeEEEECCeECCCCCC-----HHHcCcccccccCCCCC
Confidence 345555555655588999999999999999999 99999999999999999999988 9999999 799
Q ss_pred EE-EEEe
Q 032588 83 SV-IAAV 88 (137)
Q Consensus 83 tL-lv~~ 88 (137)
+| +++.
T Consensus 74 tL~L~lr 80 (118)
T 2fnj_B 74 TVGLAFR 80 (118)
T ss_dssp EEEEEEB
T ss_pred EEEEEec
Confidence 99 6654
No 69
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.63 E-value=4.4e-16 Score=112.06 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=65.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCC-------CC
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN-------GD 82 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~d-------g~ 82 (137)
|.++|+...++.++.+++.++.||.+||++|+. ..|+||++|||||.|+.|+|+.+ |++|||++ ++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~--~~giPp~qQrLI~~Gk~LeD~kT-----L~dy~I~~~ta~~q~~a 73 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEG--ILKRPPDEQRLYKDDQLLDDGKT-----LGECGFTSQTARPQAPA 73 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TTTTTCCGGGSBTTBCE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHH--HHCCCHHHeEEEeCCeECCCcCC-----HHHcCCCcCcccCCCCC
Confidence 567777766776688999999999999999999 99999999999999999999988 99999999 99
Q ss_pred EE-EEEe
Q 032588 83 SV-IAAV 88 (137)
Q Consensus 83 tL-lv~~ 88 (137)
+| |++.
T Consensus 74 tl~Lvlr 80 (118)
T 4ajy_B 74 TVGLAFR 80 (118)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 99 7765
No 70
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.62 E-value=2e-15 Score=106.76 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=65.4
Q ss_pred CceEEEEEeCCC---------CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC
Q 032588 8 ESVEITVKTIGP---------APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL 78 (137)
Q Consensus 8 ~~m~I~VKt~~~---------~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I 78 (137)
+.|+|.|++.+. ...+.++|++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|+|
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrL~~~Gk~L~D~~t-----L~~y~i 96 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHE--ATGMPAGKQKLQYEGIFIKDSNS-----LAYYNM 96 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHH--HSSCCTTTEEEEETTEEECTTSB-----HHHHTC
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHH--HHCCChHHEEEEECCEECCCCCC-----HHHCCC
Confidence 579999998752 23478999999999999999999 99999999999999999998888 999999
Q ss_pred CCCCEEEEEe
Q 032588 79 SNGDSVIAAV 88 (137)
Q Consensus 79 ~dg~tLlv~~ 88 (137)
++|++|.+..
T Consensus 97 ~~g~~i~lv~ 106 (115)
T 1we7_A 97 ASGAVIHLAL 106 (115)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999994443
No 71
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.62 E-value=2.5e-15 Score=107.71 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC---ee----cCCCCCCCCCCccccCCCC
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KV----LDDTQDDDDRDDVYLQLSN 80 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G---k~----L~D~~~~d~~~L~~~~I~d 80 (137)
..|+|+|++.+...++.+++++++||.+||++|+. .+|+||++|||+|.| +. +.|+.+ |.+|||++
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~--~~Gip~~~qrL~~~g~~~~~~~~l~~D~~t-----L~~y~i~~ 77 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLEL--VVGTTVDSMRIQLFDGDDQLKGELTDGAKS-----LKDLGVRD 77 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHH--HHCCCTTTEEEEEECSSSSEEEECCCCSSB-----TTTTTCCS
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHH--HhCCCHHHeEEEEecCCCccccccCCCcCC-----HHHCCCCC
Confidence 57999999876643478999999999999999999 999999999999988 42 366666 99999999
Q ss_pred CCEE-EEEecCCC
Q 032588 81 GDSV-IAAVKPKP 92 (137)
Q Consensus 81 g~tL-lv~~~p~~ 92 (137)
|++| ++...|..
T Consensus 78 g~~ihvvd~~p~~ 90 (122)
T 1t0y_A 78 GYRIHAVDVTGGN 90 (122)
T ss_dssp SEEEEEEECTTCC
T ss_pred CCEEEEEeCCCCC
Confidence 9999 44445444
No 72
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.62 E-value=1.1e-15 Score=117.80 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=66.1
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
.|+|+||+.+++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|.+.
T Consensus 105 eMqI~VKtl~Gkt-~~l~V~~s~TV~~LK~kI~~--~~gIp~~~QrLi~~Gk~L~D~~t-----L~dygI~~gstI~Lv 175 (189)
T 3q3f_A 105 GGQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 175 (189)
T ss_dssp CEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTCB-----GGGGTCCTTCEEEEC
T ss_pred ceeeeeecCCCCE-EEEEeCCCCcHHHHHHHHHh--ccCCCHHHEEEEECCEECCCCCC-----HHHCCCCCCCEEEEE
Confidence 4999999998866 89999999999999999999 89999999999999999999888 999999999999443
No 73
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.61 E-value=4.1e-15 Score=101.06 Aligned_cols=75 Identities=12% Similarity=0.179 Sum_probs=63.1
Q ss_pred ceEEEEEeCCC-CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-------cCeecCCCCCCCCCCccccCCCC
Q 032588 9 SVEITVKTIGP-APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-------RGKVLDDTQDDDDRDDVYLQLSN 80 (137)
Q Consensus 9 ~m~I~VKt~~~-~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~-------~Gk~L~D~~~~d~~~L~~~~I~d 80 (137)
.|.|.|..... ...+.+.+++++||.+||++|+. .+|+||++|||+| .|+.++|+.+ |++|||++
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~--~~Gip~~~QrLi~~~~~~~~~g~~l~d~~t-----L~~Y~i~~ 74 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFT--HFATPPEYMQLQLIDDRGITIEKNMANDKQ-----LGYYQCRD 74 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHT--TSCCCGGGEEEEEECTTSCEEESSCCTTSB-----GGGGTCCT
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHH--HHCCCHHHEEEEEecCCCCceeeEcCCCCC-----HHHCCCCC
Confidence 46777775433 33356899999999999999999 9999999999997 4889999888 99999999
Q ss_pred CCEE-EEEecC
Q 032588 81 GDSV-IAAVKP 90 (137)
Q Consensus 81 g~tL-lv~~~p 90 (137)
|++| +|-..|
T Consensus 75 g~~ihlvd~~P 85 (86)
T 4b6w_A 75 EFVIHVVDLQP 85 (86)
T ss_dssp TCEEEEEECCC
T ss_pred CCEEEEEeCCC
Confidence 9999 665555
No 74
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.60 E-value=5.8e-17 Score=116.81 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~~ 88 (137)
|+|+||+.+|.. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|||++|++| ++..
T Consensus 1 M~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HhCcChHHEEEEECCEECCCCCc-----hhhhccCCCCEEEEEEE
Confidence 789999998866 88999999999999999998 99999999999999999998888 999999999999 4443
No 75
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.59 E-value=3.4e-15 Score=103.22 Aligned_cols=74 Identities=9% Similarity=0.116 Sum_probs=63.4
Q ss_pred CCCceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec--Ce---ec-CCCCCCCCCCccccCC
Q 032588 6 ISESVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GK---VL-DDTQDDDDRDDVYLQL 78 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~-~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~--Gk---~L-~D~~~~d~~~L~~~~I 78 (137)
+++.|+|+|++..++ ..+.++|++++||.+||++|+. .+|+||++|||+|. |+ .| +|+.+ |++|||
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~--~~GiP~~~QrL~~~~~g~~~~~L~~D~~t-----L~~Y~i 84 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEI--LTGGCAGTMKVQVFKGDTCVSTMDNNDAQ-----LGYYAN 84 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHH--HHCSCTTTEEEEEEETTEEEEECCCTTSB-----HHHHCC
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHH--HHCcCHHHeEEEEecCCcccceeCCCCCC-----HhHCCc
Confidence 457899999987664 2377999999999999999999 99999999999998 45 44 77777 999999
Q ss_pred CCCCEEEE
Q 032588 79 SNGDSVIA 86 (137)
Q Consensus 79 ~dg~tLlv 86 (137)
++|++|.+
T Consensus 85 ~~gstihl 92 (95)
T 2kjr_A 85 SDGLRLHV 92 (95)
T ss_dssp SSSCEEEE
T ss_pred CCCCEEEE
Confidence 99999944
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.58 E-value=7.9e-15 Score=105.96 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=66.4
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
+.|+|+||+..+.. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |.+|||++|++|.+.
T Consensus 75 ~~~~i~Vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gi~~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 75 GGMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 146 (152)
T ss_dssp TCEEEEEEESSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEE
T ss_pred cccceeeeecCCCE-EEEEeCCCCcHHHHHHHHHH--HhCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 44899999988865 88999999999999999999 99999999999999999998888 999999999999444
Q ss_pred e
Q 032588 88 V 88 (137)
Q Consensus 88 ~ 88 (137)
.
T Consensus 147 ~ 147 (152)
T 3b08_A 147 L 147 (152)
T ss_dssp E
T ss_pred E
Confidence 3
No 77
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=6.1e-15 Score=102.45 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=63.9
Q ss_pred CCCceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe---e----cCCCCCCCCCCccccC
Q 032588 6 ISESVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK---V----LDDTQDDDDRDDVYLQ 77 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~-~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk---~----L~D~~~~d~~~L~~~~ 77 (137)
.++.|.|.|++...+ ..+.++|++++||++||++|+. .+|+||++|||+|.|+ . ++|+.+ |++|+
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~--~~Gip~~~QrLi~~g~~g~~~~~L~~D~~t-----L~~Y~ 83 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWK--KCGTSVNSMALELYDDSGSKVAVLSDDSRP-----LGFFS 83 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHH--HHCCCTTSEEEEEECSSSCBCCCSSGGGSC-----HHHHC
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHH--HHCcCHHHeEEEEecCCCcccceecCCcCC-----HHHCC
Confidence 356799999986553 2478999999999999999999 9999999999999984 3 366666 99999
Q ss_pred CCCCCEE-EEEe
Q 032588 78 LSNGDSV-IAAV 88 (137)
Q Consensus 78 I~dg~tL-lv~~ 88 (137)
|++|++| ++-.
T Consensus 84 I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 84 PFDGFRLHIIDL 95 (97)
T ss_dssp CCSCCEEEEEEC
T ss_pred CCCCCEEEEEeC
Confidence 9999999 5543
No 78
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=1.1e-14 Score=99.80 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=62.4
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC---ee----cCCCCCCCCCCccccCCCCC
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KV----LDDTQDDDDRDDVYLQLSNG 81 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G---k~----L~D~~~~d~~~L~~~~I~dg 81 (137)
.|+|+|++.+...++.+++++++||.+||++|+. .+|+|+++|||+|.| +. ++|+.+ |.+|||++|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~--~~gip~~~qrL~~~~~~g~~~~~l~~D~~t-----L~~y~i~~g 79 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLEL--VVGSPASCMELELYGADDKFYSKLDQEDAL-----LGSYPVDDG 79 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHH--HTCSCTTTCBCEEECSSSCEEEECCCSSSB-----TTSSSCCTT
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHH--HHCCCHHHeEEEEeCCCCccccccCCCcCC-----HhHCCCCCC
Confidence 3899999876643488999999999999999999 999999999999987 43 467767 999999999
Q ss_pred CEEEEEe
Q 032588 82 DSVIAAV 88 (137)
Q Consensus 82 ~tLlv~~ 88 (137)
++|.|..
T Consensus 80 ~~l~v~d 86 (95)
T 1v6e_A 80 CRIHVID 86 (95)
T ss_dssp CEEEEBC
T ss_pred CEEEEEE
Confidence 9995543
No 79
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.57 E-value=5.6e-15 Score=121.42 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=64.5
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCeecCCCCCCCCCCccccCCCCCCE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi---~~Gk~L~D~~~~d~~~L~~~~I~dg~t 83 (137)
.++|+|+||.. |+. +.|+|++++||++||++|++ .+|+||++|||+ |+|+.|+|+.+ |++|||++|++
T Consensus 3 ~~~i~i~Vk~~-g~~-~~v~v~~~~Tv~~lK~~I~~--~tgVpp~~QkLi~~k~~Gk~l~D~~~-----L~~~~ik~g~~ 73 (320)
T 3shq_A 3 VKEVVVIVKWS-GKE-YPVDLTDQDTVEVLRHEIFR--KTQVRPERQKLLNLKYKGKTAADNVK-----ISALELKPNFK 73 (320)
T ss_dssp -CEEEEEEEET-TEE-EEEEEETTSBHHHHHHHHHH--HHCCCGGGCEETTCBSSSSBCCTTSB-----TTSSCCC--CE
T ss_pred CceEEEEEEEC-CEE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEeecccCCcccCcccc-----HHHcCCCCCCE
Confidence 46799999984 434 88999999999999999999 999999999999 89999999888 99999999999
Q ss_pred EEEEecC
Q 032588 84 VIAAVKP 90 (137)
Q Consensus 84 Llv~~~p 90 (137)
|++++.+
T Consensus 74 l~L~gs~ 80 (320)
T 3shq_A 74 LMMVGST 80 (320)
T ss_dssp EEEECCC
T ss_pred EEEEccc
Confidence 9666543
No 80
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.56 E-value=2.5e-16 Score=117.45 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
|+|+||+.+|.. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|+|++|++| ++.
T Consensus 1 MqI~VK~l~G~~-~~l~V~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 71 (152)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEEccccCc-----HHHcCCCCCCEEEEEe
Confidence 789999998866 88999999999999999998 99999999999999999999888 999999999999 544
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=108.84 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=66.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~ 87 (137)
+.|.|+||+.+++. +.++|++++||.+||++|+. .+|+|+++|||+|+|+.|+|+.+ |.+|+|++|++|.+.
T Consensus 95 gg~~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~q~L~~~g~~L~D~~t-----L~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 95 GGMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 166 (172)
T ss_dssp CCEEEEEEESSCCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTSB-----SGGGTCCTTCEEEEC
T ss_pred ccccceeecccCcc-eeEEecCCCCHHHHHHHHHH--HhCCCceeEEEEECCccCCCCCc-----HHHhCCCCCCEEEEE
Confidence 45899999988866 88999999999999999999 99999999999999999999888 999999999999443
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=9.4e-15 Score=102.14 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=58.6
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~--~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
.|.+++++.+++. +.|+|++++||.+||++|++ ++|+||++|||+| .|+ |+|+.+ |++|+|++|++|++
T Consensus 8 ~m~~~~vk~~Gk~-~~v~v~~~~TV~~LK~~I~~--~tgIpp~~QkLi~~~~gk-L~D~~t-----Ls~~~I~~gstL~l 78 (100)
T 2dzm_A 8 RMLDFRVEYRDRN-VDVVLEDTCTVGEIKQILEN--ELQIPVSKMLLKGWKTGD-VEDSTV-----LKSLHLPKNNSLYV 78 (100)
T ss_dssp CEEEEEEECSSCE-EEEEEETTSBHHHHHHHHHH--HHCCCTTTCCEECCSSSC-CCTTSB-----HHHHCCCSEEEEEE
T ss_pred ceEEEEEEeCCeE-EEEEECCCCcHHHHHHHHHH--HHCCChhHeEEEccCCCC-CCCcCC-----HHHcCCCCCCEEEE
Confidence 3665665556655 88999999999999999999 9999999999996 555 888777 99999999999854
No 83
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.53 E-value=1.2e-14 Score=121.57 Aligned_cols=77 Identities=21% Similarity=0.376 Sum_probs=67.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc-CCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS-ANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~-~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
.+|+|+||+..++. +.|+|+++.||.+||++|+... +.|+|+++|||||+||.|+|+.+ |.+|+|++|++| +
T Consensus 6 ~~M~I~VKtl~Gk~-~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~t-----L~dygI~~gstIv~ 79 (368)
T 1oqy_A 6 SAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP-----IRDYRIDEKNFVVV 79 (368)
T ss_dssp CCCCEEEEETTTEE-EEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSB-----TTTTCCCTTSCEEE
T ss_pred ceEEEEEEeCCCCE-EEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCC-----HHHcCCCCCCEEEE
Confidence 56999999998865 8899999999999999998611 35799999999999999999888 999999999999 5
Q ss_pred EEecC
Q 032588 86 AAVKP 90 (137)
Q Consensus 86 v~~~p 90 (137)
+..++
T Consensus 80 lv~k~ 84 (368)
T 1oqy_A 80 MVTKT 84 (368)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 55544
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.53 E-value=1.6e-14 Score=101.29 Aligned_cols=75 Identities=25% Similarity=0.310 Sum_probs=64.0
Q ss_pred CceEEEEEeCCCCCcEEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEecCe-----------e----cCCCCCCCCC
Q 032588 8 ESVEITVKTIGPAPPSRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRGK-----------V----LDDTQDDDDR 71 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~-~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk-----------~----L~D~~~~d~~ 71 (137)
+.|.|+||+..|. ..|+|+ +++||.+||++|++ .+++|+++|||+|.|+ . +.|+.+
T Consensus 6 ~~M~irvrs~~G~--~~v~v~~~~~Tv~~LK~kI~~--~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~t---- 77 (107)
T 1wf9_A 6 SGTMLRVRSRDGL--ERVSVDGPHITVSQLKTLIQD--QLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLR---- 77 (107)
T ss_dssp CCEEEEEECSSCE--EEEEECCTTSBHHHHHHHHHH--HSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCB----
T ss_pred CeEEEEEECCCCC--EEEEECCCCCcHHHHHHHHHH--HhCcCcccCEEEECCccccccCccccccccccCCCCCC----
Confidence 4499999999885 478999 99999999999999 9999999999999998 3 355555
Q ss_pred CccccCCCCCCEEEEEecCC
Q 032588 72 DDVYLQLSNGDSVIAAVKPK 91 (137)
Q Consensus 72 ~L~~~~I~dg~tLlv~~~p~ 91 (137)
|++|||++|++|++...+.
T Consensus 78 -L~~~gi~~G~~L~l~~~~~ 96 (107)
T 1wf9_A 78 -ISSLNLAHGSMVYLAYEGE 96 (107)
T ss_dssp -GGGTCCCTTCEEECCCSSC
T ss_pred -HHHCCCCCCCEEEEEeCCC
Confidence 9999999999996655443
No 85
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.51 E-value=3.9e-14 Score=116.16 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=67.1
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
..+|+|+||+..++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|.+
T Consensus 231 ~~~MqI~VKtl~Gk~-~~leV~~s~TV~dLK~kI~~--~~GIp~~~QRLi~~Gk~L~D~~T-----LsdygI~~gstL~L 302 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 302 (307)
T ss_dssp CCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TGGGTCCTTCEEEE
T ss_pred CCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEeCCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 467999999988865 88999999999999999999 99999999999999999998888 99999999999944
Q ss_pred E
Q 032588 87 A 87 (137)
Q Consensus 87 ~ 87 (137)
.
T Consensus 303 v 303 (307)
T 3ai5_A 303 V 303 (307)
T ss_dssp E
T ss_pred E
Confidence 3
No 86
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.49 E-value=2.5e-14 Score=96.22 Aligned_cols=75 Identities=24% Similarity=0.292 Sum_probs=61.5
Q ss_pred eEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEec--CeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~-v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~--Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
|+|.||+.+|+. .+. +++++||.+||+.|++ .+|+|+++|||+|. ||.|.-+ +++.+|++|||++|++|+|
T Consensus 1 m~i~vr~~~G~~--~v~~l~~~~Tv~~Lk~~I~~--~~gi~~~~qrL~~~~p~k~l~l~--~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 1 WRVRCKAKGGTH--LLQGLSSRTRLRELQGQIAA--ITGIAPGSQRILVGYPPECLDLS--DRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp CCEEEEETTEEE--EECSCCTTCBHHHHHHHHHH--HTCCCTTTCCCEESSCCCCCCCC--CSSCBTTTSSCCTTCEEEC
T ss_pred CEEEEEcCCCCE--EeeecCCCCCHHHHHHHHHH--HhCCCccceEEEeCCCCcccccC--CCCCCHHHcCCCCCCEEEE
Confidence 689999999954 577 9999999999999999 99999999999997 4777410 1234499999999999977
Q ss_pred EecC
Q 032588 87 AVKP 90 (137)
Q Consensus 87 ~~~p 90 (137)
....
T Consensus 75 ~~~~ 78 (86)
T 2kzr_A 75 EEDQ 78 (86)
T ss_dssp CCCS
T ss_pred EeCC
Confidence 6554
No 87
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1.4e-12 Score=89.90 Aligned_cols=75 Identities=13% Similarity=0.333 Sum_probs=67.5
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL- 84 (137)
.++.|+|+||+..++. +.+.|.+++++..|++++++ +.|+|+++|||+|.|+.|.++.| .++|++.+||+|
T Consensus 4 ~~~~i~ikVk~~~g~~-i~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Id 75 (94)
T 2io1_B 4 MNDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTID 75 (94)
T ss_dssp --CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTCEEE
T ss_pred CCCeEEEEEECCCCCE-EEEEECCCCHHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEE
Confidence 4577999999988865 88999999999999999999 99999999999999999999888 999999999999
Q ss_pred EEEe
Q 032588 85 IAAV 88 (137)
Q Consensus 85 lv~~ 88 (137)
++..
T Consensus 76 v~~~ 79 (94)
T 2io1_B 76 VFQQ 79 (94)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5543
No 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.38 E-value=3.9e-14 Score=109.15 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~~ 88 (137)
|+|+||++.+.. +.|+|++++||.+||++|++ ..|+|+++|||||.|+.|.|+.+ |+ +|++| ||+.
T Consensus 1 MqI~VKtL~Gkt-itLeV~~sdTV~~LK~kI~~--keGIP~~qQRLIf~GK~LeD~~T-----Ls-----~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGET-KIYTLEQGTSVLDLKSQISQ--DMGFEIDMMTLVNNGFIAPNTEL-----VT-----DDVTYYLSLK 67 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCE-EEEEECCcChHHHHHHHHHH--HhCcChhHEEEEecCeECCCCCc-----cc-----CCCEEEEEEe
Confidence 789999998865 88999999999999999998 99999999999999999999888 77 89999 6643
No 89
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=1.5e-11 Score=84.30 Aligned_cols=76 Identities=14% Similarity=0.328 Sum_probs=61.3
Q ss_pred CCceEEEEEeC--CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe------e-cCCCCCCCCCCccccC
Q 032588 7 SESVEITVKTI--GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK------V-LDDTQDDDDRDDVYLQ 77 (137)
Q Consensus 7 ~~~m~I~VKt~--~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk------~-L~D~~~~d~~~L~~~~ 77 (137)
+.+++|+|++. .....+.+.+++++||++||.+|+. .+|+|+..|||.|.+. . |. +|+.+|.+|+
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~--~~gip~~~q~L~~~~~~~~~~~~~L~----~d~~~L~~y~ 80 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSR--LLKVPVSELLLSYESSKMPGREIELE----NDLQPLQFYS 80 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHT--TTTCCTTTCEEEEECTTSCSCEEECC----CSSSBSGGGT
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHH--HHCCChhHeEEEEEcCCCCceeeccC----CCcccHhhcC
Confidence 46799999975 3334478999999999999999999 9999999999999842 2 32 2234599999
Q ss_pred CCCCCEEEEEe
Q 032588 78 LSNGDSVIAAV 88 (137)
Q Consensus 78 I~dg~tLlv~~ 88 (137)
|.+|++|+|..
T Consensus 81 i~~G~~I~V~d 91 (97)
T 1wjn_A 81 VENGDCLLVRW 91 (97)
T ss_dssp CCTTCEEEEEC
T ss_pred CCCCCEEEEEe
Confidence 99999996655
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=7e-12 Score=85.97 Aligned_cols=74 Identities=14% Similarity=0.326 Sum_probs=67.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
++.|+|+|++..++. +.+.|.+++++..|++++++ +.|++++++|++|.|+.|.++.| .++|++.+||+| +
T Consensus 3 ~~~i~ikVk~~~g~~-v~~~vk~~t~l~kl~~~y~~--~~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Idv 74 (91)
T 2io0_B 3 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 74 (91)
T ss_dssp -CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HTTCCSTTEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 467999999988864 88999999999999999999 99999999999999999999888 999999999999 5
Q ss_pred EEe
Q 032588 86 AAV 88 (137)
Q Consensus 86 v~~ 88 (137)
+..
T Consensus 75 ~~~ 77 (91)
T 2io0_B 75 FQQ 77 (91)
T ss_dssp EEC
T ss_pred EEe
Confidence 544
No 91
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.30 E-value=1.2e-11 Score=82.42 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=67.9
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
+++.|+|+|++..++..+.+.|.+++++..|++++++ +.|+++++|||+|.|+.|.++.| .++|++.+||+|-
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~~l~medgD~Id 76 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEE--AMGLSGHKLSFFFDGTKLSGKEL-----PADLGLESGDLIE 76 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHH--HHTCTTCCCEEEETTEECCSCCC-----HHHHTCCTTCEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEE
Confidence 3567999999988863488999999999999999999 99999999999999999999888 9999999999995
Q ss_pred EE
Q 032588 86 AA 87 (137)
Q Consensus 86 v~ 87 (137)
|.
T Consensus 77 v~ 78 (79)
T 3a4r_A 77 VW 78 (79)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.28 E-value=1.2e-11 Score=80.83 Aligned_cols=69 Identities=14% Similarity=0.319 Sum_probs=64.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
|+|+|++..+.. +.+.|.+++++..|++++++ +.|++++++|++|.|+.|.++.| .+++++.+||+|-|
T Consensus 2 i~lkV~~~~g~~-v~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~~l~medgD~Idv 70 (72)
T 1wm3_A 2 INLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEEEECTTSCE-EEEEECTTSCTHHHHHHHHH--HHTCCTTTCEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred EEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 789999988864 88999999999999999999 99999999999999999999888 99999999999933
No 93
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.25 E-value=2.7e-11 Score=83.08 Aligned_cols=73 Identities=14% Similarity=0.337 Sum_probs=66.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
++.|+|+|++..+.. +.+.|.+++++..|++++++ +.|++++++||+|.|+.|.++.| ..+|++.+||+| +
T Consensus 15 ~~~i~ikV~~~~g~~-i~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~dl~medgD~Idv 86 (93)
T 2d07_B 15 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 86 (93)
T ss_dssp CCEEEEEEECTTSCE-EEEEEETTSCHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEEccCCHHHHHHHHHHH--HhCCCccceEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 467999999988754 88999999999999999999 99999999999999999999888 999999999999 5
Q ss_pred EE
Q 032588 86 AA 87 (137)
Q Consensus 86 v~ 87 (137)
+.
T Consensus 87 ~~ 88 (93)
T 2d07_B 87 FQ 88 (93)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=3.8e-11 Score=84.21 Aligned_cols=72 Identities=14% Similarity=0.322 Sum_probs=66.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
++.|+|+|++..+.. +.+.|.+++++..|++++++ +.++++++|||+|.|+.|.++.| ..+|++.+||+|-|
T Consensus 22 ~~~I~IkVk~~~g~~-i~~kVk~~t~l~kL~~~y~e--k~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Idv 93 (104)
T 1wz0_A 22 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 93 (104)
T ss_dssp SCCEEEEEECSSSCE-EEEEECTTSCHHHHHHHHHH--HHTCCTTTSCEESSSSBCCTTSC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEEcCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 457999999988754 88999999999999999999 99999999999999999999888 99999999999944
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.17 E-value=3.4e-11 Score=85.36 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=67.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
++.|+|+|++..+.. +.+.|.+++++..|++++++ +.++++++|||+|.|+.|.++.| ..+|++.+||+| +
T Consensus 24 ~~~I~IkVk~~~g~~-i~fkVk~~t~l~kL~~ay~e--k~gi~~~~~rfiFdG~~L~~~~T-----p~dl~mEDgD~Idv 95 (110)
T 2k8h_A 24 TALVAVKVVNADGAE-MFFRIKSRTALKKLIDTYCK--KQGISRNSVRFLFDGTPIDETKT-----PEELGMEDDDVIDA 95 (110)
T ss_dssp CCCEEEEEEETTSCC-EEEEECTTSSHHHHHHHHHH--HHTCCSSSCEEESSSCBCCSSSH-----HHHHHCSSEEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 456999999988865 88999999999999999999 99999999999999999999888 999999999999 5
Q ss_pred EE
Q 032588 86 AA 87 (137)
Q Consensus 86 v~ 87 (137)
+.
T Consensus 96 ~~ 97 (110)
T 2k8h_A 96 MV 97 (110)
T ss_dssp EC
T ss_pred EE
Confidence 44
No 96
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.15 E-value=1.7e-10 Score=81.34 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=65.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
++.|+|+|++ .+.. +.+.|.+++++..|++++++ +.|++++++|++|.|+.|.++.| ..+|++.+||+| +
T Consensus 29 ~~~I~IkV~~-~g~~-i~fkIk~tt~l~kL~~ay~e--k~gi~~~~~rF~FdG~rl~~~~T-----p~dl~medgD~Idv 99 (106)
T 2eke_C 29 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 99 (106)
T ss_dssp CSEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEec-CCcE-EEEEeCCCCHHHHHHHHHHH--HhCCCcccEEEEECCeEcCCCCC-----HHHcCCCCCCEEEE
Confidence 3569999999 7754 88999999999999999999 99999999999999999999888 999999999999 5
Q ss_pred EE
Q 032588 86 AA 87 (137)
Q Consensus 86 v~ 87 (137)
+.
T Consensus 100 ~~ 101 (106)
T 2eke_C 100 HR 101 (106)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.91 E-value=6.5e-09 Score=74.25 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=66.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
++.|+|+|++..+.. +.+.|..++++..|+..+++ ..|++++.+|++|.|+.|.++.| ..++++.+||+| +
T Consensus 38 ~~~I~LKV~~qdg~e-v~fkIk~tt~L~KLm~aY~e--r~Gl~~~~irFlFDG~rI~~~~T-----P~dL~MEDgD~IdV 109 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEV 109 (115)
T ss_dssp -CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HHTCCTTSEEEEETTEECCTTCC-----TTTTTCCTTCEEEE
T ss_pred CCeEEEEEEcCCCCE-EEEEEccCChHHHHHHHHHH--HhCCChhhEEEEECCeECCCCCC-----HHHcCCCCCCEEEE
Confidence 467999999988766 78999999999999999999 99999999999999999999888 999999999999 5
Q ss_pred EE
Q 032588 86 AA 87 (137)
Q Consensus 86 v~ 87 (137)
+.
T Consensus 110 ~~ 111 (115)
T 3kyd_D 110 YQ 111 (115)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.78 E-value=2.3e-08 Score=77.45 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=65.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
++.|+|+|+. .+.. +.+.|.+++++..|++.+++ +.|++++++|++|.|+.|.++.| ..++++.+||+| +
T Consensus 27 ~~~I~LkV~~-~g~~-v~fkIk~~t~l~kL~~ay~e--r~Gi~~~~~RF~FdG~rI~~~~T-----P~dL~MEdgD~Idv 97 (200)
T 3pge_A 27 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 97 (200)
T ss_dssp CCCEEEEEEC-SSCE-EEEEECTTSCTHHHHHHHHH--HHSSCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEec-CCCE-EEEEEecCCHHHHHHHHHHH--HhCCChhhEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 4568999974 5544 78999999999999999999 99999999999999999999988 999999999999 6
Q ss_pred EEec
Q 032588 86 AAVK 89 (137)
Q Consensus 86 v~~~ 89 (137)
+...
T Consensus 98 ~~~q 101 (200)
T 3pge_A 98 HREQ 101 (200)
T ss_dssp EECC
T ss_pred Eecc
Confidence 5544
No 99
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.74 E-value=3.8e-09 Score=70.54 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=57.6
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee---cCCCCCCCCCCccccCCCCCCEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV---LDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~---L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
++|.|.||+..|. +.|++++++|+.+|+++|++ .++++++.|.+.+.-.. |. ...+.+|+++||++||+|
T Consensus 3 ~~m~lRvrs~~G~--~Ri~v~~~~t~~~L~~~I~~--~~~i~~~~~~l~~~~~p~~~l~---~~~~~~l~~lgl~hGd~l 75 (80)
T 2pjh_A 3 ESIIIRVQSPDGV--KRITATKRETAATFLKKVAK--EFGFQNNGFSVYINRNKTGEIT---ASSSKSLHLLKIKHGDLL 75 (80)
T ss_dssp CCCCCEEECSSEE--EECCCCSSCCHHHHHHHHHH--HTCCCTTTCCCCCSCCGGGGSS---SCCCCTTTTTCCCTTCCE
T ss_pred CcEEEEEECCCCC--EEEEcCCcChHHHHHHHHHH--HcCCCCCcceEEecCCCCCccc---CCCCCCHHHcCCCCCCEE
Confidence 5589999998884 57889999999999999999 89999999887554333 21 113345999999999999
Q ss_pred EE
Q 032588 85 IA 86 (137)
Q Consensus 85 lv 86 (137)
++
T Consensus 76 ~l 77 (80)
T 2pjh_A 76 FL 77 (80)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 100
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.51 E-value=8.3e-07 Score=59.52 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=65.4
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e-~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
+.|++-+++..+.. +.+.|+++++|.+|-..... +.+++++ ..||.|-|.-|..+.+ +.+|++.|||-| +
T Consensus 8 ~~~~~~~~~~~~~d-l~f~I~~~t~v~kLi~ayc~--~~~I~~~~~IrllFDGdRLdp~~t-----p~DlemeD~D~IDv 79 (82)
T 3goe_A 8 KLITLLLRSSKSED-LRLSIPVDFTVKDLIKRYCT--EVKISFHERIRLEFEGEWLDPNDQ-----VQSTELEDEDQVSV 79 (82)
T ss_dssp CEEEEEEEESSSCC-EEEEEETTSBHHHHHHHHHH--HHTCCCCTTCEEEETTEECCTTSB-----GGGSSCCTTCEEEE
T ss_pred HHHHHhhhccCCCC-eEEEecCCCCHHHHHHHHHH--HcCCCcCceEEEEEcCcccCccCC-----hhhhCCcCCceeee
Confidence 56889999988776 88999999999999999988 9999999 8999999999999888 999999999999 5
Q ss_pred E
Q 032588 86 A 86 (137)
Q Consensus 86 v 86 (137)
+
T Consensus 80 m 80 (82)
T 3goe_A 80 V 80 (82)
T ss_dssp E
T ss_pred e
Confidence 5
No 101
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.50 E-value=2.1e-07 Score=72.10 Aligned_cols=73 Identities=14% Similarity=0.273 Sum_probs=64.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
++.|+|+|+. .+.. +.+.|.+++++..|++.+++ ..|++++.+|++|.|+.|.++.| ..++++.+||+| +
T Consensus 55 ~e~InLKVk~-dG~e-V~FKIKrtTpL~KLmeAYcE--RqGL~~~sIRFLFDGqRI~~ddT-----PeDLdMEDGDtIDV 125 (207)
T 3tix_A 55 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLTFLYDGIEIQADQT-----PEDLDMEDNDIIEA 125 (207)
T ss_dssp CCEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHHHH--HTTCCGGGSCEEETTEECCSSCC-----TTTTTCCTTEEEEE
T ss_pred CCcEEEEEec-CCCE-EEEEEccCChHHHHHHHHHH--HhCCCcccEEEEECCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 4568888974 5544 78999999999999999999 99999999999999999999888 999999999999 4
Q ss_pred EEe
Q 032588 86 AAV 88 (137)
Q Consensus 86 v~~ 88 (137)
+..
T Consensus 126 ~le 128 (207)
T 3tix_A 126 HRE 128 (207)
T ss_dssp CCC
T ss_pred EEe
Confidence 443
No 102
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.45 E-value=1.2e-06 Score=60.69 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=66.3
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
.++.|+|+|+...+...+.+.|..++++.-|....++ ..+++++..|++|.|..|..+.| ..++++.+||+|-
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~--~~g~~~~~vrF~FDG~rI~~~~T-----P~dLdMEDgD~ID 94 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEE--AMGLSGRKLSFFFDGTKLSGREL-----PADLGMESGDLIE 94 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHH--HTTCSSSCCEEEETTEECCSCSC-----HHHHTCCTTEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHH--HHCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEE
Confidence 4567999999887754478999999999999999998 99999999999999999998888 9999999999994
Q ss_pred E
Q 032588 86 A 86 (137)
Q Consensus 86 v 86 (137)
|
T Consensus 95 v 95 (97)
T 2jxx_A 95 V 95 (97)
T ss_dssp E
T ss_pred E
Confidence 4
No 103
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.37 E-value=5.7e-07 Score=62.07 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=47.6
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~ 63 (137)
..-|.|-+......+.+.+.++.||..||++|++ ++|||+++|+|+|.|+.+.
T Consensus 12 rkvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~e--qTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 12 RMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYK--QTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCBHHHHHHHHHH--HHCCCGGGEEEEETTEEEC
T ss_pred ceeEEEEEcccceEEEEEeccchHHHHHHHHHHH--HhCCCHHHHHHHhCCCccc
Confidence 3567777888877788999999999999999999 9999999999999998875
No 104
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.22 E-value=1.5e-07 Score=73.71 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL- 84 (137)
.++.|+|+| +..++. +.+.|.+++.+..|++.+++ +.|++++++|++|.|+.+.++.| ..++++.+||+|
T Consensus 18 p~e~InLKV-~qdGse-V~FKIKrtTpL~KLM~AYcE--RqGLs~~siRFLFDGqRI~dddT-----PadL~MEDGDtID 88 (227)
T 3v7o_A 18 PETHINLKV-SDGSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIE 88 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEE-eCCCCE-EEEEEccCChHHHHHHHHHH--HhCCCccceEEEECCEecCCCCC-----HHHcCCCCCCEEE
Confidence 356688888 656654 77899999999999999998 99999999999999999999888 999999999999
Q ss_pred EEEe
Q 032588 85 IAAV 88 (137)
Q Consensus 85 lv~~ 88 (137)
++..
T Consensus 89 V~le 92 (227)
T 3v7o_A 89 AHRE 92 (227)
T ss_dssp ----
T ss_pred EEec
Confidence 5543
No 105
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.07 E-value=9.3e-06 Score=62.59 Aligned_cols=73 Identities=15% Similarity=0.292 Sum_probs=64.0
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL- 84 (137)
.++.|.|+|++ .++ .+.+.+..++.+.-|++..++ +.|++++++|++|.|+.+.++.+ -.++++.++|+|
T Consensus 18 ~~~~i~ikv~~-~~~-~v~~~i~~~~~l~kl~~~y~~--~~g~~~~~~~f~fdG~~i~~~~T-----pk~L~~ed~d~I~ 88 (209)
T 3uf8_A 18 PETHINLKVSD-GSS-EIFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIE 88 (209)
T ss_dssp CCSEEEEEEEC-SSC-EEEEEEETTSCTHHHHHHHHH--HHTCCGGGCEEEETTEECCTTCC-----TTTTTCCTTEEEE
T ss_pred CCCcEEEEEEc-CCC-EEEEEEeeCCHHHHHHHHHHH--hhCCChheEEEEECCEeccCCCC-----hHHhhhcccccch
Confidence 35779999987 443 377899999999999999999 99999999999999999999888 999999999999
Q ss_pred EEE
Q 032588 85 IAA 87 (137)
Q Consensus 85 lv~ 87 (137)
++.
T Consensus 89 ~~~ 91 (209)
T 3uf8_A 89 AHR 91 (209)
T ss_dssp EEC
T ss_pred hhc
Confidence 443
No 106
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.90 E-value=1.6e-06 Score=72.40 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL- 84 (137)
+++.|+|+|++ .++. +.+.|..++++..|++..++ ..|++++++|++|.|+.+.++.| ..++++.+||+|
T Consensus 18 ~~~~I~LKV~~-~g~~-v~FkIk~~t~l~kLm~aY~~--r~G~~~~~~rFlFdG~rI~~~~T-----P~~L~MEDgD~Id 88 (360)
T 3ix6_A 18 PETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIE 88 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcE-EEEEEecCChHHHHHHHHHH--HhCCCcceEEEEECCeECCCCCC-----hHHcCCCccchhh
Confidence 45678888987 4433 67899999999999999998 99999999999999999999888 999999999999
Q ss_pred EEEe
Q 032588 85 IAAV 88 (137)
Q Consensus 85 lv~~ 88 (137)
++..
T Consensus 89 v~~~ 92 (360)
T 3ix6_A 89 AHRE 92 (360)
T ss_dssp ----
T ss_pred hhhc
Confidence 5543
No 107
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.87 E-value=7.1e-05 Score=51.61 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=61.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
+..|.|+|+. .+.. ..+.+-.++...-|.+..++ ..|+++++.|++|.|..+..+.| -.++++.+||+|
T Consensus 19 ~~~IniKV~~-~g~e-v~FkIK~tt~l~KL~~aYc~--r~gv~~~sirFlfDG~rI~~~~T-----P~~L~meD~DiI 87 (95)
T 2l76_A 19 PRLFPLKIRC-RADL-VRLPLRMSEPLQSVVDHMAT--HLGVSPSRILLLFGETELSPTAT-----PRTLKLGVADII 87 (95)
T ss_dssp CCCEEEEEEC-SSSE-EEEEECSSSCTHHHHHHHHH--HHTSCGGGEEEEETTEECCTTSC-----HHHHTCCSSCEE
T ss_pred CCeEEEEEEc-CCcE-EEEEEecCChHHHHHHHHHh--hcCCChhhEEEEECCcCCCCCCC-----HhHcCCCCCCEE
Confidence 3458999996 4433 67899999999999999988 99999999999999999999888 999999999999
No 108
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.66 E-value=6.5e-06 Score=68.20 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
++.|.|+|++ .+.. +.+.|..++++..|++..++ +.|+++.++|++|.|+.|.++.| ..++++.+||+| +
T Consensus 28 ~~~i~lkv~~-~~~~-~~~~i~~~~~~~~l~~~y~~--~~g~~~~~~~f~f~G~~i~~~~T-----p~~l~med~d~i~~ 98 (389)
T 4da1_A 28 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQA-----PEDLDMEDNDIIEA 98 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcE-EEEEECCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEeee
Confidence 4568888887 4433 67899999999999999999 99999999999999999999888 999999999999 4
Q ss_pred EE
Q 032588 86 AA 87 (137)
Q Consensus 86 v~ 87 (137)
+.
T Consensus 99 ~~ 100 (389)
T 4da1_A 99 HR 100 (389)
T ss_dssp --
T ss_pred ee
Confidence 43
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.54 E-value=0.00023 Score=47.67 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=56.1
Q ss_pred ceEEEEEe--CCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC-----ceEEEecCeecCCCCCCCCCCccccCCCCC
Q 032588 9 SVEITVKT--IGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-----NLRLVFRGKVLDDTQDDDDRDDVYLQLSNG 81 (137)
Q Consensus 9 ~m~I~VKt--~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e-----~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg 81 (137)
-|.|+|-. -.++. +.+.+|...||.+|.+.+.+ ..+++.. ..|+.-+|..|.++.. |++|+|++|
T Consensus 4 yI~ITidl~~y~~~~-~DLRIP~~~tvK~Li~~l~e--a~~l~~~~~~~~~irv~NK~~~L~~~~~-----L~d~~ItnG 75 (81)
T 2bps_A 4 YIDITIDLKHYNGSV-FDLRLSDYHPVKKVIDIAWQ--AQSVSMPPREGHWIRVVNKDKVFSGECK-----LSDCGITNG 75 (81)
T ss_dssp EEEEEEECTTTTCCE-EEEEEETTSBTTHHHHHHHH--HSCCCSCCCTTCEEEEGGGTEEEETTSB-----TGGGTCCTT
T ss_pred EEEEEEEeeccCCce-EEEECCCchhHHHHHHHHHH--HhCCCcCCCCCCEEEEecCCEEEcCCCE-----EeeCCcCCC
Confidence 46777774 34444 88999999999999999998 6665432 3788889999999998 999999999
Q ss_pred CEEE
Q 032588 82 DSVI 85 (137)
Q Consensus 82 ~tLl 85 (137)
|.|-
T Consensus 76 D~Le 79 (81)
T 2bps_A 76 DRLE 79 (81)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 9984
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.49 E-value=0.00027 Score=48.26 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
.-|.|+|-+.++.+ ..|.|.|+.++.++=+...+ ++|+.+++-.|-|+++.|.=+.. +-..||.+|.+| ++
T Consensus 8 ~~m~v~Vl~~n~rr-~~VKvtp~t~L~~VL~eaC~--K~gl~~~~~~Lkh~~k~lDLSlp-----fRlsgLpnnAkLELv 79 (90)
T 2al3_A 8 GGSAVSVLAPNGRR-HTVKVTPSTVLLQVLEDTCR--RQDFNPSEYDLKFQRTVLDLSLQ-----WRFANLPNNAKLEMV 79 (90)
T ss_dssp --CCEEEECTTSCE-EEECCCTTSBHHHHHHHHHH--HTTCCGGGCEEEETTEEESSSCB-----HHHHCCCSSCEEEEE
T ss_pred CccEEEEEcCCCcE-EEEEECCCCCHHHHHHHHHH--HhCCChhhCeEEeCCEeccccce-----eEecCCCCCCEEEEE
Confidence 34689999988866 88999999999998777767 89999999999999999975555 888999999999 66
Q ss_pred EecCCC
Q 032588 87 AVKPKP 92 (137)
Q Consensus 87 ~~~p~~ 92 (137)
.....+
T Consensus 80 ~~s~s~ 85 (90)
T 2al3_A 80 PVSRSR 85 (90)
T ss_dssp CSSSCC
T ss_pred EccCCC
Confidence 554433
No 111
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.40 E-value=0.0016 Score=42.87 Aligned_cols=76 Identities=11% Similarity=0.206 Sum_probs=59.9
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCE
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~t 83 (137)
......|.||..+|+. +.-.++.+.||.+|..-|.. .+.++...+|+ |-.+.+..+ +.+.+|.++||.++.+
T Consensus 4 ~~~~~~i~iRlpdG~r-~~~~F~~~~tl~~v~~fv~~---~~~~~~~f~L~t~fPrk~l~~~--d~~~TL~e~gL~p~a~ 77 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEF-LERRFLASNKLQIVFDFVAS---KGFPWDEYKLLSTFPRRDVTQL--DPNKSLLEVKLFPQET 77 (84)
T ss_dssp CCCEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHH---TTCCTTTEEEECSSSCCBGGGS--CTTSBTTTTTCCSEEE
T ss_pred CCCeEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH---cCCCCCCeEEEeCCCCCCCcCC--CCCCCHHHCCCCCCCE
Confidence 4567899999999976 66789999999999999976 45778889998 457778411 1235699999999999
Q ss_pred EEEE
Q 032588 84 VIAA 87 (137)
Q Consensus 84 Llv~ 87 (137)
|+|-
T Consensus 78 L~ve 81 (84)
T 3qx1_A 78 LFLE 81 (84)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 112
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.20 E-value=0.00038 Score=50.27 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=52.9
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC-------------------------------------ce
Q 032588 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-------------------------------------NL 53 (137)
Q Consensus 11 ~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e-------------------------------------~q 53 (137)
.|+|+.+++.. .++.|+.+.||.+++..|+. +.|++.. +|
T Consensus 13 ~LkV~llDg~~-ktl~VD~S~~V~~lv~~Ic~--kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTV-KTIMVDDSKTVTDMLMTICA--RIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCE-EEEEEEECSSHHHHHHHHHH--HHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCE-EEEEeCCCcCHHHHHHHHHH--HhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 58899998866 88999999999999999998 8888743 23
Q ss_pred EEEe--cCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032588 54 RLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (137)
Q Consensus 54 RLi~--~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv~~ 88 (137)
||.. .+..|.++ .+|.++||.++++|++..
T Consensus 90 kL~~dd~~~WLD~s-----rtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 90 KLHTDDELNWLDHG-----RTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SCCCSSSEEEECSS-----SCHHHHTCCTTSEEEEEE
T ss_pred HhcccCCCCcccCC-----CcHHHcCCCCCCEEEEEE
Confidence 3321 12444444 459999999999997653
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.83 E-value=0.0091 Score=41.37 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=62.1
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
.....|.||..+|.. +.-.++.+.||.+|.+-|.. ..+.+.....|+ |--|.+.++ +.+.+|.++||.+..+|
T Consensus 11 ~~~t~IqIRlpdG~r-l~~rF~~~~tl~~v~~fV~~--~~~~~~~~f~L~t~fPrk~l~~~--d~~~TL~elgL~psa~L 85 (109)
T 2dzk_A 11 STIARIQFRLPDGSS-FTNQFPSDAPLEEARQFAAQ--TVGNTYGNFSLATMFPRREFTRE--DYKRRLLDLELAPSASV 85 (109)
T ss_dssp SCCEEEEEECSSSCE-EEEEECTTSBHHHHHHHHHH--HHTTSSCSCEEECSSSCCBCCTT--TTTSBTGGGTCSSEEEE
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--ccCCCCCceEEEcCCCCcCCccc--ccCCCHHHCCCCCceEE
Confidence 456999999999976 77799999999999999987 556666777887 456677532 12356999999999888
Q ss_pred EEEecCCC
Q 032588 85 IAAVKPKP 92 (137)
Q Consensus 85 lv~~~p~~ 92 (137)
+|....++
T Consensus 86 ~v~~~~~~ 93 (109)
T 2dzk_A 86 VLLPAGRP 93 (109)
T ss_dssp EEECCSSC
T ss_pred EEEECcCC
Confidence 77655443
No 114
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.37 E-value=0.015 Score=41.21 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=59.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
.....|.||..+|.+ +.-.++.+.||.+|..-|.. . +.++....|+ |-.|.|..+ +.+.+|.++||.+...|
T Consensus 41 ~~~t~IqIRlPdG~r-l~~rF~~~~tl~~V~~fV~~--~-~~~~~~F~L~t~fPrk~l~~~--d~~~TL~e~gL~psa~L 114 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKR-EQITLPEQAKLLALVKHVQS--K-GYPNERFELLTNFPRRKLSHL--DYDITLQEAGLCPQETV 114 (124)
T ss_dssp SCEEEEEEECTTSCE-EEEEEETTSCHHHHHHHHHH--H-HCCTTTEEEECSSSCCEETSS--CSSSCTTTTTCCSSBCC
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--c-CCCCCCeEEecCCCCcCCccC--CCCCCHHHCCCCCceEE
Confidence 467999999999976 77799999999999999987 4 7777888887 558888421 12356999999998888
Q ss_pred EEE
Q 032588 85 IAA 87 (137)
Q Consensus 85 lv~ 87 (137)
+|.
T Consensus 115 iv~ 117 (124)
T 1wj4_A 115 FVQ 117 (124)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 115
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.15 E-value=0.022 Score=39.32 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=58.5
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
...++|.||..+|++ +.-.++.+.||.+|..-|.. . +..+...+|+ |-.|.|..+ .+.+|.++||.+..+|
T Consensus 21 ~~~~~IqiRlpdG~r-~~rrF~~~~tl~~v~~fv~~--~-~~~~~~f~L~t~fPrk~l~~d---~~~TL~e~gL~p~a~L 93 (109)
T 2cr5_A 21 EEVVTVALRCPNGRV-LRRRFFKSWNSQVLLDWMMK--V-GYHKSLYRLSTSFPRRALEVE---GGSSLEDIGITVDTVL 93 (109)
T ss_dssp SSEEEEEEECTTSCE-EEEEEESSSBTHHHHHHHHH--H-TCCTTTEEEECSSSCCBCCCC---SSCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--c-CCCCCCeEEEeCCCCcCCCCC---CCCCHHHcCCCCCeEE
Confidence 357999999999976 66789999999999999976 3 4567778887 557788532 2366999999998888
Q ss_pred EEEe
Q 032588 85 IAAV 88 (137)
Q Consensus 85 lv~~ 88 (137)
+|..
T Consensus 94 ~Ve~ 97 (109)
T 2cr5_A 94 NVEE 97 (109)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6643
No 116
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.59 E-value=0.15 Score=35.81 Aligned_cols=80 Identities=11% Similarity=0.183 Sum_probs=51.7
Q ss_pred CceEEEEEeCC-CCCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec----CeecCCCCCCC-------
Q 032588 8 ESVEITVKTIG-PAPPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR----GKVLDDTQDDD------- 69 (137)
Q Consensus 8 ~~m~I~VKt~~-~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip------~e~qRLi~~----Gk~L~D~~~~d------- 69 (137)
++++|.+-... +..++.+.|-.-.||.++|++|-.+...|.| ++.+.|-++ |+.|.|....-
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wk 89 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWK 89 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CC
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcce
Confidence 45777776543 2233677777778999999999874444554 456778774 45566543110
Q ss_pred -CCCccccCCCCCCEE-EEE
Q 032588 70 -DRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 70 -~~~L~~~~I~dg~tL-lv~ 87 (137)
=-+|.+|+|.||.+| ++.
T Consensus 90 rLNTL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 90 RVNTLMHYNVRDGATLILSK 109 (111)
T ss_dssp CCCBHHHHTCCTTCEEEEEE
T ss_pred EecchhhcCCCCCCEEEEEe
Confidence 046889999999999 653
No 117
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=95.54 E-value=0.1 Score=33.14 Aligned_cols=65 Identities=15% Similarity=0.364 Sum_probs=43.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~--e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
|+|+|+..+.-+.-.+++ ...||.+|.+.+.. ..++.. ....+..+|+...+. +.-|++||.| ++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~--~~~l~~~l~~~~vavN~~~v~~~---------~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQE--KEGLKEWLGVCAIALNDHLIDNL---------NTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHT--CTTTTTTTTTCEEEESSSEECCT---------TCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHH--CcCHHHHhhccEEEECCEEcCCC---------CcCCCCCCEEEEE
Confidence 568888766654334677 56899999999976 443332 445666677775432 2368999999 44
No 118
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=95.23 E-value=0.13 Score=41.81 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=61.4
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC----CCCCceEEEe------cCeecCCCCCCCCCCccccCCC
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH----LPIENLRLVF------RGKVLDDTQDDDDRDDVYLQLS 79 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~----ip~e~qRLi~------~Gk~L~D~~~~d~~~L~~~~I~ 79 (137)
+.++|.-. ..+-++.+++++||.+.-..|.+ +.. -+++.--|.. +|.-|.++.+ |..|+++
T Consensus 4 ~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e--~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~-----l~~y~~~ 74 (371)
T 3ivf_A 4 LSLKISIG--NVVKTMQFEPSTMVYDACRMIRE--RIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKA-----LDYYMLR 74 (371)
T ss_dssp EEEEEEET--TEEEEEEECTTCBHHHHHHHHHT--TCGGGGSSCGGGEEEEECCSSGGGCEECCTTSB-----GGGGTCC
T ss_pred EEEEEEec--ceeEEEEECCCCCHHHHHHHHHH--hcccccCCCHHHCeEeccCCCCCcCEeccCCCC-----HHHhCCC
Confidence 56666665 33357999999999999999977 553 3577777776 5667888778 9999999
Q ss_pred CCCEEEEEecCCCCCcccccc
Q 032588 80 NGDSVIAAVKPKPPPRHLRDD 100 (137)
Q Consensus 80 dg~tLlv~~~p~~~~~~~~~~ 100 (137)
+|+.|....++..-.+++-|+
T Consensus 75 ~~~~l~~~~~~~~~~V~l~dg 95 (371)
T 3ivf_A 75 NGDTMEYRKKQRPLKIRMLDG 95 (371)
T ss_dssp TTCEEEEEECEEEEEEECTTS
T ss_pred CCceeeccCceeEEEEECcCC
Confidence 999997766666555555554
No 119
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.99 E-value=0.085 Score=34.04 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=43.5
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
|+|+||..+. ....++++..+||++| +. ..++|++.--+...|+....+. +.+||.| ++
T Consensus 1 M~v~Vkl~g~-~~~~~ev~~g~Tv~dL---L~---~Lgl~~~~VvV~vNG~~v~~d~-----------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGE-ETSEVAVDDDGTYADL---VR---AVDLSPHEVTVLVDGRPVPEDQ-----------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSS-SEEEEECSTTCSHHHH---HH---TTCCCSSCCCEECCCCCCCTTS-----------SSCCCCEEEC
T ss_pred CEEEEEEeCc-cceeEEcCCCCcHHHH---HH---HcCCCcceEEEEECCEECCHHH-----------CCCCCEEEEE
Confidence 6788887744 3356899999999998 43 5889999987778888875332 2359998 54
No 120
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.48 E-value=0.12 Score=36.50 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=54.6
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCE
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi--~~Gk~L~D~~~~d~~~L~~~~I~dg~t 83 (137)
......|.||..+|.. +.-.++.+.||.+|++-|.. ...+.......|+ |-.+.+.|+ +.+|.++||.+...
T Consensus 49 ~~~~t~IqIRlpdG~r-l~~rF~~~~tl~~v~~fV~~-~~~~~~~~~f~L~t~fPrk~l~d~----~~TL~eagL~psav 122 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGR-LVQKFNHSHRISDIRLFIVD-ARPAMAATSFVLMTTFPNKELADE----NQTLKEANLLNAVI 122 (127)
T ss_dssp TSCCCCEEEEETTTTE-EEEECCSSCBHHHHHHHHHH-HCSGGGTSCEEEEETTTTEECCST----TCBHHHHTCSSCEE
T ss_pred CCCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH-hCcCCCCCCeEEecCCCCCCCCCC----CCcHHHCCCcCceE
Confidence 3457899999999976 77799999999999999986 1234556678887 557788642 35699999988433
No 121
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.46 E-value=0.12 Score=34.50 Aligned_cols=48 Identities=13% Similarity=0.249 Sum_probs=40.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk 60 (137)
..|.|+|... .++.|.|+++.+..+|+++|++ +.+++++..+|-|+-.
T Consensus 4 ~~~~VKV~~~---~tvairvp~~~~y~~L~~~l~~--kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK---YTVVMKTQPGLPYSQVRDMVSK--KLELRLEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS---SEEEEEECTTCCHHHHHHHHHH--HTTCCGGGCCEEECCT
T ss_pred CcEEEEEEEE---EEEEEECCCCCCHHHHHHHHHH--HhCCCcceeEEEeeCC
Confidence 3467777664 3478999999999999999999 9999999999999864
No 122
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.45 E-value=0.23 Score=36.05 Aligned_cols=81 Identities=11% Similarity=0.171 Sum_probs=52.8
Q ss_pred CceEEEEEeCC-----CCCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEe----cCee-cCCCCCCCC-
Q 032588 8 ESVEITVKTIG-----PAPPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVF----RGKV-LDDTQDDDD- 70 (137)
Q Consensus 8 ~~m~I~VKt~~-----~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip------~e~qRLi~----~Gk~-L~D~~~~d~- 70 (137)
++++|.|-... +...+.+.|-.-.||.++|++|-+..-.++| ++..-|-+ .|+. |.|....-.
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~ 102 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 102 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccc
Confidence 45777765542 1234778888888999999999875455654 45566665 2433 666432100
Q ss_pred -------CCccccCCCCCCEE-EEEe
Q 032588 71 -------RDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 71 -------~~L~~~~I~dg~tL-lv~~ 88 (137)
-+|..|+|.+|.+| ++..
T Consensus 103 ~~~wkrLNTL~HY~V~Dga~l~l~~~ 128 (138)
T 2r2o_A 103 QGLWRRLNTLQHYKVPDGATVALVPC 128 (138)
T ss_dssp ETTEEECCBHHHHTCCTTCEEEEEEC
T ss_pred cCCceeecchhccCCCCCCEEEEEEC
Confidence 26999999999999 6544
No 123
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=94.12 E-value=0.13 Score=35.88 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=25.1
Q ss_pred CceEEEEEeCCC-------CCcEEEEecC---CCcHHHHHHHHHh
Q 032588 8 ESVEITVKTIGP-------APPSRLSVSS---PIKVRDLRKLIAT 42 (137)
Q Consensus 8 ~~m~I~VKt~~~-------~~~~~l~v~~---~~TV~dLK~~Ia~ 42 (137)
.+|+|+|+..++ .+.+.++++. ..||++|-+.+.+
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~ 54 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKK 54 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTT
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 569999995533 2334578883 3699999998865
No 124
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.80 E-value=0.14 Score=39.09 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=52.0
Q ss_pred eEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEE--ec-Ce--ecCCCCCCCCCCccccCCCCCC
Q 032588 10 VEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLV--FR-GK--VLDDTQDDDDRDDVYLQLSNGD 82 (137)
Q Consensus 10 m~I~VKt~~~~-~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e-~qRLi--~~-Gk--~L~D~~~~d~~~L~~~~I~dg~ 82 (137)
+.+++...... ....+.++...||.+|++.+.+ .++++++ ..||- |. ++ .|.+. +.+|.+++|.+|.
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~--~~~i~~~~~~RlW~~~~~~~~~~L~~~----~~tl~~~~l~~~Q 201 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRK--IFSIPDEKETRLWNKYMSNTFEPLNKP----DSTIQDAGLYQGQ 201 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHH--HTTCCTTSCEEEEEEEETTEEEECCCT----TSBHHHHTCCTTC
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHH--HhCCCCCCceEEEEecCCCCeeecCCC----CCCHHHhCCCCCC
Confidence 34444443322 2245778899999999999998 8999997 57774 32 22 24332 2459999999999
Q ss_pred EEEEEecC
Q 032588 83 SVIAAVKP 90 (137)
Q Consensus 83 tLlv~~~p 90 (137)
.|++-.+.
T Consensus 202 ~illE~r~ 209 (217)
T 4a3p_A 202 VLVIEQKN 209 (217)
T ss_dssp EEEEEECC
T ss_pred EEEEEEec
Confidence 99886653
No 125
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.44 E-value=0.52 Score=33.25 Aligned_cols=80 Identities=14% Similarity=0.278 Sum_probs=50.5
Q ss_pred CceEEEEEeCCC--CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec-Ce----ecCCCCCC------
Q 032588 8 ESVEITVKTIGP--APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR-GK----VLDDTQDD------ 68 (137)
Q Consensus 8 ~~m~I~VKt~~~--~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip------~e~qRLi~~-Gk----~L~D~~~~------ 68 (137)
++++|.+-...+ ..++.+.|-.-.||.++|++|-.+...+.| ++.+.|-++ |. .|.|....
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 456666543322 233667777778999999999874445554 456777763 42 25553321
Q ss_pred --CCCCccccCCCCCCEE-EEE
Q 032588 69 --DDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 69 --d~~~L~~~~I~dg~tL-lv~ 87 (137)
.=-+|.+|+|.+|.+| ++.
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~ 113 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVS 113 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEE
T ss_pred ceEeccccccCCCCCCEEEEEe
Confidence 0046889999999999 654
No 126
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=93.40 E-value=0.59 Score=33.45 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=49.4
Q ss_pred CceEEEEEe---CCC-----CCcEEEEecCCCcHHHHHHHHHhccC--CCCC----CCceEEEec-C---eecCCCCCCC
Q 032588 8 ESVEITVKT---IGP-----APPSRLSVSSPIKVRDLRKLIATSSA--NHLP----IENLRLVFR-G---KVLDDTQDDD 69 (137)
Q Consensus 8 ~~m~I~VKt---~~~-----~~~~~l~v~~~~TV~dLK~~Ia~~~~--~~ip----~e~qRLi~~-G---k~L~D~~~~d 69 (137)
.++++.+-. ..+ ..++.+.|-.-.||.++|++|-.+.. .++| ++.+.|-++ | ..|.|....-
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence 456777665 222 23366777777899999999875322 2443 556777663 2 3444432210
Q ss_pred ---C------CCccccCCCCCCEE-EEE
Q 032588 70 ---D------RDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 70 ---~------~~L~~~~I~dg~tL-lv~ 87 (137)
+ -||..|+|.+|.+| +++
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred eEecCCeeEeccccccCCCCCCEEEEee
Confidence 1 36889999999999 553
No 127
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.29 E-value=1.4 Score=31.46 Aligned_cols=80 Identities=13% Similarity=0.209 Sum_probs=51.1
Q ss_pred ceEEEEEeC-CCCCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec-C---e-ecCCCCCCCC------
Q 032588 9 SVEITVKTI-GPAPPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR-G---K-VLDDTQDDDD------ 70 (137)
Q Consensus 9 ~m~I~VKt~-~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip------~e~qRLi~~-G---k-~L~D~~~~d~------ 70 (137)
++++.+-.. .+..++.+.|-.-.||.++|++|-.+...+.| ++.+.|-++ | + .|.|....-.
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 445554432 22233667777778999999999875455554 466888873 3 3 3665331101
Q ss_pred --CCccccCCCCCCEE-EEEe
Q 032588 71 --RDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 71 --~~L~~~~I~dg~tL-lv~~ 88 (137)
-+|.+|+|.||.+| ++..
T Consensus 84 rLNTL~HY~V~dgatv~l~~~ 104 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLI 104 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEEC
T ss_pred EeccccccCCCCCCEEEEEEc
Confidence 46899999999999 6543
No 128
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=92.94 E-value=0.73 Score=28.86 Aligned_cols=60 Identities=22% Similarity=0.413 Sum_probs=43.6
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
.|+|+|.-..+. ..++++...||.+|.+.+ ++++...-+...|.....+. -|++||.| ++
T Consensus 4 ~m~i~vNg~~~~--~~~~~~~~~tv~~Ll~~l------~~~~~~v~vavN~~~v~~~~----------~L~~gD~V~ii 64 (70)
T 1ryj_A 4 GMKFTVITDDGK--KILESGAPRRIKDVLGEL------EIPIETVVVKKNGQIVIDEE----------EIFDGDIIEVI 64 (70)
T ss_dssp CEEEEEEETTEE--EEEEESSCCBHHHHHHHT------TCCTTTEEEEETTEECCTTS----------BCCTTCEEEEE
T ss_pred eEEEEEeCccCc--eeEECCCCCcHHHHHHHh------CCCCCCEEEEECCEECCCcc----------cCCCCCEEEEE
Confidence 488888764332 357888889999998755 35567777888998886432 68899999 54
No 129
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.60 E-value=0.61 Score=35.89 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=46.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEe-cC----eecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVF-RG----KVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e-~qRLi~-~G----k~L~D~~~~d~~~L~~~~I~dg~tLlv~~~p 90 (137)
++.++...||.+|++.+.. .++++++ ..||-. .+ ..|.|. +.+|.+++|.+|..|++-.+.
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~--~~~i~~~~~~RLW~~~~~~~~~~L~~~----~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRK--LFNIPAERETRLWNKYMSNTYEQLSKL----DNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEECTTCBHHHHHHHHHH--HTTCCTTSCEEEEECSSSSSCEECCCT----TSBTTTTTCCTTEEEEEEECC
T ss_pred EEEecccCcHHHHHHHHHH--HhCCCCCCeEEEEEecCCCCHhhhcCC----CCCHHHhCCCCCCEEEEEEec
Confidence 4567888999999999998 9999998 588853 32 234332 245999999999999887664
No 130
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.45 E-value=1.3 Score=29.33 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=43.6
Q ss_pred CceEEEEEeCC------CCCcEEEEecCCCcHHHHHHHHHhccCC-CC----------CCCceEEEecCeecCCCCCCCC
Q 032588 8 ESVEITVKTIG------PAPPSRLSVSSPIKVRDLRKLIATSSAN-HL----------PIENLRLVFRGKVLDDTQDDDD 70 (137)
Q Consensus 8 ~~m~I~VKt~~------~~~~~~l~v~~~~TV~dLK~~Ia~~~~~-~i----------p~e~qRLi~~Gk~L~D~~~~d~ 70 (137)
++|+|+|+..+ +.....++++...||.+|.+.+.. .. ++ ......+...|+....
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~--~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------ 79 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKK--RHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------ 79 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHH--HCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHh--HChhHHHHhhccccccCCcEEEEECCEECCC------
Confidence 56899999553 222256788888999999999876 32 11 1234556667776642
Q ss_pred CCccccCCCCCCEEEE
Q 032588 71 RDDVYLQLSNGDSVIA 86 (137)
Q Consensus 71 ~~L~~~~I~dg~tLlv 86 (137)
+.-|++||.|.+
T Consensus 80 ----~~~L~dGDeV~i 91 (98)
T 1vjk_A 80 ----DEELKDGDVVGV 91 (98)
T ss_dssp ----TCBCCTTCEEEE
T ss_pred ----CCCCCCCCEEEE
Confidence 346899999833
No 131
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=91.88 E-value=0.11 Score=37.07 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=30.0
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR 58 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~ 58 (137)
..+.|..++|+.+|+..|++ ..|+|+++|||-+-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~--~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQ--TMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHH--HHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHH--HhCCCcccEEEEEe
Confidence 35778889999999999999 89999999999644
No 132
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=91.74 E-value=0.68 Score=31.00 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=47.0
Q ss_pred CceEEEEEeCCCCCcEEEEecCC-CcHHHHHHHHHhccCCCCCCCceEE-EecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSP-IKVRDLRKLIATSSANHLPIENLRL-VFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~-~TV~dLK~~Ia~~~~~~ip~e~qRL-i~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
.|..|+.|..+......|.++.. .+|.+||+.|.+ +.++-....-| ||...--+ +-. .+..-|.-+++|+
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~--~~kl~~~dfDL~i~na~T~e-eY~-----Dd~~lIprnssVi 76 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMG--REKLKAADCDLQITNAQTKE-EYT-----DDNALIPKNSSVI 76 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHH--HHTCCTTTEEEEEEESSSCC-EEC-----STTCEEETTCCEE
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHH--HhCCCCCcccEEEeCCCCCC-ccC-----CCceEEecCCEEE
Confidence 46678888877777567899864 899999999998 44443334333 33321111 111 2222455677777
Q ss_pred EEecCCCC
Q 032588 86 AAVKPKPP 93 (137)
Q Consensus 86 v~~~p~~~ 93 (137)
|...|...
T Consensus 77 VrRvP~~~ 84 (86)
T 2c7h_A 77 VRRIPIGG 84 (86)
T ss_dssp EEEEECSS
T ss_pred EEeccCcc
Confidence 77766543
No 133
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.42 E-value=0.38 Score=32.49 Aligned_cols=75 Identities=13% Similarity=0.071 Sum_probs=56.9
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
..++.+.|.....++ ..+.|+|..++.+|--.|.+ ++.+.|+.--|.-.-+.- +..+=+++|.+|||+. |++
T Consensus 8 E~TvRLvVNy~~tQK-tVvRVSP~vpL~ellp~IC~--Kcefdp~~~~Ll~d~~~~--e~LdLskSLndlgirE---Lya 79 (91)
T 2daj_A 8 EKTVRVVINFKKTQK-TIVRVSPHASLQELAPIICS--KCEFDPLHTLLLKDYQSQ--EPLDLTKSLNDLGLRE---LYA 79 (91)
T ss_dssp CSCEEEEEEETTTEE-EEEEECSSSCTTTHHHHHHH--HTTCCTTSEEEESCSSCC--CBCCTTSCHHHHTCSE---EEE
T ss_pred ccEEEEEEeecCcce-eEEEeCCCCcHHHHHHHHhh--cccCChhhEEEecCCCCC--cccchhcchhhhhhhh---hhe
Confidence 478999999988776 67899999999999999988 999999998775332221 1222245699999987 655
Q ss_pred Eec
Q 032588 87 AVK 89 (137)
Q Consensus 87 ~~~ 89 (137)
+..
T Consensus 80 ~d~ 82 (91)
T 2daj_A 80 MDV 82 (91)
T ss_dssp EEC
T ss_pred ecc
Confidence 543
No 134
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=90.26 E-value=1.6 Score=28.89 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=24.1
Q ss_pred ceEEEEEeC-------CCCCcEEEEec--CCCcHHHHHHHHHh
Q 032588 9 SVEITVKTI-------GPAPPSRLSVS--SPIKVRDLRKLIAT 42 (137)
Q Consensus 9 ~m~I~VKt~-------~~~~~~~l~v~--~~~TV~dLK~~Ia~ 42 (137)
||+|+|+.. ++.....++++ ...||++|.+.+.+
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~ 43 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVS 43 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHH
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHH
Confidence 367887733 23443567777 67899999999976
No 135
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=89.22 E-value=0.75 Score=30.53 Aligned_cols=62 Identities=10% Similarity=0.095 Sum_probs=40.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCC-CcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSP-IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~-~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL- 84 (137)
..+|+|+| ++. .++++.. .||.+|.+.+ ++++....+...|..+..+. ..+.-|++||.|
T Consensus 18 ~~~M~I~v---NGe---~~el~~~~~Tv~dLL~~L------~~~~~~vaVavNg~iV~~~~------~~~~~L~dGD~Ve 79 (87)
T 1tyg_B 18 GGRHMLQL---NGK---DVKWKKDTGTIQDLLASY------QLENKIVIVERNKEIIGKER------YHEVELCDRDVIE 79 (87)
T ss_dssp ----CEEE---TTE---EECCSSSCCBHHHHHHHT------TCTTSCCEEEETTEEECGGG------TTTSBCCSSSEEE
T ss_pred CcceEEEE---CCE---EEECCCCCCcHHHHHHHh------CCCCCCEEEEECCEECChhh------cCCcCCCCCCEEE
Confidence 44566665 332 4567776 8999997654 45677777888999886422 344579999999
Q ss_pred EE
Q 032588 85 IA 86 (137)
Q Consensus 85 lv 86 (137)
++
T Consensus 80 i~ 81 (87)
T 1tyg_B 80 IV 81 (87)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 136
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=89.19 E-value=2 Score=28.74 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=38.6
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEecC
Q 032588 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRG 59 (137)
Q Consensus 5 ~~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~-qRLi~~G 59 (137)
.+++.|+|++...+ .. +.+.++++.+..+|.+++.+ .++++.++ ..+-|..
T Consensus 2 ~~~~~vkvK~~~~g-di-~~~~v~~~i~~~~L~~kv~~--~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 2 PLGSQVRVKAYYRG-DI-MITHFEPSISFEGLCNEVRD--MCSFDNEQLFTMKWID 53 (89)
T ss_dssp CCSSCEEEEEESSS-CE-EEEEECTTCCHHHHHHHHHH--HTTCCSSCCEEEEECC
T ss_pred CCCCeEEEEEEeCC-eE-EEEECCCCCCHHHHHHHHHH--HhCCCCCCeEEEEEEC
Confidence 34566777776643 33 67899999999999999999 89887655 7776763
No 137
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=86.59 E-value=2.8 Score=33.35 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=39.8
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeec
Q 032588 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L 62 (137)
+.+-.........+.+.+..|+.++++.++. .++++++.|.|+|.+..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYK--QTKIISSNQELIYEGRRL 361 (396)
T ss_dssp EEEEETTTTEEEEEEECTTCBHHHHHHHHHH--HHCCCSTTEEEESSSSEE
T ss_pred EEEEEeccceEEEEEcCchhHHHHHHHHHHH--hcCCChhhhHHHhcCCCC
Confidence 4455555555456788899999999999999 999999999999998443
No 138
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=85.97 E-value=6 Score=35.06 Aligned_cols=81 Identities=12% Similarity=0.231 Sum_probs=52.0
Q ss_pred CceEEEEEeCCC--CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec----Ce-ecCCCCCCCC----
Q 032588 8 ESVEITVKTIGP--APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR----GK-VLDDTQDDDD---- 70 (137)
Q Consensus 8 ~~m~I~VKt~~~--~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip------~e~qRLi~~----Gk-~L~D~~~~d~---- 70 (137)
.++++.+-...+ ..++.+.|-.-.||.++|++|-.+.-.|.| ++.+-|-++ |+ .|.|+...-.
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~ 311 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECD 311 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCc
Confidence 456777664432 233667777778999999999874444543 566777663 33 3555332100
Q ss_pred ----CCccccCCCCCCEE-EEEe
Q 032588 71 ----RDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 71 ----~~L~~~~I~dg~tL-lv~~ 88 (137)
-+|.+|+|.||.+| ++..
T Consensus 312 wkrLNTL~HY~V~Dga~v~L~p~ 334 (627)
T 3ig3_A 312 WKRVNSLAHYQVTDGSLVALVPK 334 (627)
T ss_dssp EEECCBTTTTTCCTTCEEEEEEC
T ss_pred eeEecchhhcCCCCCceEEEEec
Confidence 36899999999999 6643
No 139
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=84.47 E-value=0.64 Score=32.14 Aligned_cols=74 Identities=23% Similarity=0.263 Sum_probs=38.9
Q ss_pred ceEEEEEeCCCC-----CcEEEEecC----CCcHHHHHHHHHhccCCCCCCCceEEEec-C--e------ecCCCCCCCC
Q 032588 9 SVEITVKTIGPA-----PPSRLSVSS----PIKVRDLRKLIATSSANHLPIENLRLVFR-G--K------VLDDTQDDDD 70 (137)
Q Consensus 9 ~m~I~VKt~~~~-----~~~~l~v~~----~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~-G--k------~L~D~~~~d~ 70 (137)
+|+|+|+..++- +...++++. .+||++|=..+++ . ++..+-+|+.. | . +|-++..-.-
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~--~--~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKT--N--YVKERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTT--T--TCCSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHH--H--ccccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 378888854431 124677773 2599999888865 3 34444444322 2 1 2332221000
Q ss_pred CCccccCCCCCCEEEE
Q 032588 71 RDDVYLQLSNGDSVIA 86 (137)
Q Consensus 71 ~~L~~~~I~dg~tLlv 86 (137)
..=.++.|++||.|.+
T Consensus 80 l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEF 95 (110)
T ss_dssp HTSSCCCCCSSCEEEE
T ss_pred cCCcccCCCCcCEEEE
Confidence 0013467899999844
No 140
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=84.02 E-value=0.69 Score=39.81 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=29.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV 56 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi 56 (137)
..+.|..++|+.+|++.|++ ..|+|+++|||-
T Consensus 38 ~~~rv~k~~~~~~l~~~va~--~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQ--TMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHH--HHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHH--HhCcCcccEEEE
Confidence 46789999999999999999 999999999994
No 141
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=83.94 E-value=2.1 Score=30.60 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=41.4
Q ss_pred EEEecC----CCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCC--CCccccCCCCCCEEEEEec
Q 032588 24 RLSVSS----PIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDD--RDDVYLQLSNGDSVIAAVK 89 (137)
Q Consensus 24 ~l~v~~----~~TV~dLK~~Ia~~~~~~ip~e~qRLi~--~Gk~L~D~~~~d~--~~L~~~~I~dg~tLlv~~~ 89 (137)
.+.|+. .+|+++|-+.+.. +.|+.. ...+.- ..+.|-|-..+|. ++|+++|+++|++|.|.-.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~--~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIRE--KYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHH--HHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEeCcccccccCHHHHHHHHHH--hcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 367764 3799999888877 677653 444431 2344444333333 7899999999999966543
No 142
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=83.55 E-value=3.7 Score=36.41 Aligned_cols=98 Identities=11% Similarity=0.150 Sum_probs=57.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC--------C-CCCEEEEEec----
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL--------S-NGDSVIAAVK---- 89 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I--------~-dg~tLlv~~~---- 89 (137)
..+.+.++.|+.+|+..|+. .++++++.|-+++.+...-+... ..+.|-+ . +.+.|++..+
T Consensus 324 ~~~~i~~~~tl~~l~~~i~~--~T~i~~~~q~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (676)
T 3qa8_A 324 HTYPVTENENLQNLKSWLQQ--DTGIPEEEQELLQASGLALNSAQ----PLTQYVIDCTVIDGRQGEGDLIFLFDNRKTV 397 (676)
T ss_dssp CEEECCTTCCHHHHHHHHHT--TSCCCSTTCEEESSSSCCCCTTS----CGGGSCCCSCC-------CCCEEECSSCC--
T ss_pred ceeecCCCccHHHHHHHHHH--HhCCCHHHHHHHhccCCCCCCCc----chhhheeccccccccCCCCceEEEEeccccc
Confidence 56788899999999999999 99999999999998655433322 1333321 2 3334443333
Q ss_pred --CCCCCccccccCccCCcccccccccCCcchHHHHHHH
Q 032588 90 --PKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRKLL 126 (137)
Q Consensus 90 --p~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 126 (137)
+.-+...+..-..+=-.+-..++..++-.-.|.-+++
T Consensus 398 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (676)
T 3qa8_A 398 YEPQISLPAHPESVSIVLQDPKRPLTYTHLRRVWGQIWQ 436 (676)
T ss_dssp ----CCCCCCCCCHHHHHHTTCCCCCCSCCTTHHHHHHH
T ss_pred ccCCCCCCCCChHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 1111122222111112233566677777888876654
No 143
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=82.89 E-value=6.3 Score=34.99 Aligned_cols=81 Identities=12% Similarity=0.198 Sum_probs=51.8
Q ss_pred CceEEEEEeCC-----CCCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec----Ce-ecCCCCCCCC-
Q 032588 8 ESVEITVKTIG-----PAPPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR----GK-VLDDTQDDDD- 70 (137)
Q Consensus 8 ~~m~I~VKt~~-----~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip------~e~qRLi~~----Gk-~L~D~~~~d~- 70 (137)
.++++.|-... ...++.+.|-.-.||.++|++|-.+.-.|.| ++.+-|-++ |+ .|.|....-.
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~ 335 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 335 (644)
T ss_dssp CEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred eeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCcccee
Confidence 45677765432 1233677887888999999999864444544 455677663 33 3555431000
Q ss_pred -------CCccccCCCCCCEE-EEEe
Q 032588 71 -------RDDVYLQLSNGDSV-IAAV 88 (137)
Q Consensus 71 -------~~L~~~~I~dg~tL-lv~~ 88 (137)
-+|.+|+|.||.+| ++..
T Consensus 336 ~~~wkrLNTL~HY~V~dga~v~L~p~ 361 (644)
T 3hm6_X 336 QGLWRRLNTLQHYKVPDGATVALVPC 361 (644)
T ss_dssp ETTEEECCBTTTTTCCTTCEEEEEEC
T ss_pred cCcceeecchhhcCCCCCcEEEEEec
Confidence 36999999999999 6643
No 144
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=82.18 E-value=2.7 Score=25.69 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=37.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
|+|+|...+|+ ..+++..+|+.+|-..+.. +++....-....|+... + ++-|++|+.| ++
T Consensus 1 m~i~i~~p~g~---~~~~~~g~T~~dla~~i~~----~l~~~~vaa~vNg~lvd---------l-~~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGE---IKRLPQGATALDFAYSLHS----DLGDHCIGAKVNHKLVP---------L-SYVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCC---EEEECTTCBHHHHHHHHCS----HHHHTEEEEEETTEECC---------T-TCBCCSSSBEEEE
T ss_pred CeEEEEcCCCC---EEEcCCCCcHHHHHHHHhh----ccccceEEEEECCEEeC---------C-CcCcCCCCEEEEE
Confidence 55677766664 3688889999999877732 11112222235676553 2 3567889988 54
No 145
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=81.25 E-value=5.1 Score=24.94 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=32.5
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC-----CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~-----ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
..++ +...||.+|.+.+.. ... ++.....+...|+.... +.-|++||.|-
T Consensus 19 ~~~~-~~~~tv~~ll~~L~~--~~p~~~~~l~~~~~~v~vN~~~v~~----------~~~l~~gD~V~ 73 (81)
T 1fm0_D 19 TEVA-ADFPTVEALRQHMAA--QSDRWALALEDGKLLAAVNQTLVSF----------DHPLTDGDEVA 73 (81)
T ss_dssp EEEC-SCCSBHHHHHHHHHT--TCHHHHHHHCCTTCEEEETTEECCT----------TCBCCTTCEEE
T ss_pred EEEc-CCCCCHHHHHHHHHH--HChhHHHHhcCCCEEEEECCEECCC----------CCCCCCCCEEE
Confidence 3444 466899999999875 321 22334566777877642 23689999993
No 146
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=80.51 E-value=7.7 Score=26.64 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=53.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCee--cCCCCCCCCCCccccCCCCC
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKV--LDDTQDDDDRDDVYLQLSNG 81 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi---~~Gk~--L~D~~~~d~~~L~~~~I~dg 81 (137)
+..+-..|-....++ .++.++...|+.+++..+++ +.+...+.+.|+ +.|-. |++++. -..-.+.-+
T Consensus 7 sD~i~~~Vy~~Dhsy-~tvr~~v~~sa~eIl~~va~--kl~~~~e~l~Lv~v~ssGEk~~lqp~d~-----si~tsL~~N 78 (104)
T 1wgy_A 7 GEEIFCHVYITEHSY-VSVKAKVSSIAQEILKVVAE--KIQYAEEDLALVAITFSGEKHELQPNDL-----VISKSLEAS 78 (104)
T ss_dssp SSCCCEEEECSSSCE-EEECCCTTCBSHHHHHHHHH--HHTSCGGGEEEEEECSSCCCCBCCTTSB-----SSCCSSCSS
T ss_pred CCceEEEEEeccCce-EEEEEeccchHHHHHHHHHH--HhcCCccceEEEEEccCCcEeecCCcce-----EEEeecccc
Confidence 345666777776766 77889999999999999999 888887788886 45654 344444 344456666
Q ss_pred CEEEEEec
Q 032588 82 DSVIAAVK 89 (137)
Q Consensus 82 ~tLlv~~~ 89 (137)
..|+++.+
T Consensus 79 gRLfvc~k 86 (104)
T 1wgy_A 79 GRIYVYRK 86 (104)
T ss_dssp CEEEEEEC
T ss_pred ceEEEeeh
Confidence 77866654
No 147
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=80.46 E-value=7 Score=26.26 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=46.7
Q ss_pred CceEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhc-cCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 8 ESVEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATS-SANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~--~~l~v~~~~TV~dLK~~Ia~~-~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
++|+|.|-..-+.+. +.++++..+||.++=+...-. ....+..+...+-..|+....+ .-|++||.|
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d----------~~L~dGDRV 80 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLT----------DVLKEGDRI 80 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTT----------CBCCTTCEE
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCC----------ccCCCCCEE
Confidence 678888886655532 346888999999987655310 0224455567888888888632 358999999
Q ss_pred -EE
Q 032588 85 -IA 86 (137)
Q Consensus 85 -lv 86 (137)
++
T Consensus 81 EIy 83 (97)
T 2hj1_A 81 EIY 83 (97)
T ss_dssp EEC
T ss_pred EEE
Confidence 65
No 148
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=79.86 E-value=9.3 Score=24.27 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=34.3
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC-CC-----C-----CceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANH-LP-----I-----ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~-ip-----~-----e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
..++++...||.+|.+.+.. ... +. . ....+...|+.... +.-|++||.|.
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~--~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~----------~~~l~~gDeV~ 81 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVG--AHPALESRVFGDDGELYDHINVLRNGEAAAL----------GEATAAGDELA 81 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHH--HCGGGHHHHBCTTSCBCTTSEEEETTEECCT----------TSBCCTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHH--HCcHHHHHHhccCCcccccEEEEECCEECCC----------CcccCCCCEEE
Confidence 56888888999999999976 431 10 0 12456667776642 23688999993
No 149
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=77.88 E-value=8.6 Score=26.11 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=43.1
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-------cCeecCCCCC
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-------RGKVLDDTQD 67 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~-------~Gk~L~D~~~ 67 (137)
..+..-|+|-...++. ..|.|++.+|++++=+.+++ +.++..+.---+| .-+.++|++.
T Consensus 6 ~~~k~vvkvf~~Dgss-ksi~V~~~~Ta~dv~~~L~~--K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~ 71 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGAC-RSVEVAAGATARHVCEMLVQ--RAHALSDETWGLVECHPHLALERGLEDHES 71 (100)
T ss_dssp CCSCEEEEEEETTSCE-EEEEECTTCCHHHHHHHHHC--SSSCCCCCCCCEEEEETTTTEEEEECSSSC
T ss_pred cCCCEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHH--HcCCCCCCCeEEEEecCCCCcEEeccCchh
Confidence 4456778888887866 78999999999999999998 8887644421111 3466777766
No 150
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=75.86 E-value=4.3 Score=26.85 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=40.3
Q ss_pred CceEEEEEeCCCCCc----EEEEecCCCcHHHHHHHHHhccCC-CCCC---------Cce-------EEEecCeecCCCC
Q 032588 8 ESVEITVKTIGPAPP----SRLSVSSPIKVRDLRKLIATSSAN-HLPI---------ENL-------RLVFRGKVLDDTQ 66 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~----~~l~v~~~~TV~dLK~~Ia~~~~~-~ip~---------e~q-------RLi~~Gk~L~D~~ 66 (137)
.+|+|+|+..+.-+. ..++++ ..||.+|.+.+.. .. ++.. ... .+...|+......
T Consensus 2 ~mm~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~--~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~ 78 (99)
T 2l52_A 2 HMAEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTD--KYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE 78 (99)
T ss_dssp CCCEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHH--HCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT
T ss_pred CceEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHH--HChhHHHHHhcccccccceeccccccEEEECCEEccccC
Confidence 368899986533211 134555 6899999999876 32 1111 022 5667777653211
Q ss_pred CCCCCCccccCCCCCCEEE
Q 032588 67 DDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 67 ~~d~~~L~~~~I~dg~tLl 85 (137)
-.+.-|++||.|.
T Consensus 79 ------~~~~~L~~gD~V~ 91 (99)
T 2l52_A 79 ------GLETLLKDSDEIG 91 (99)
T ss_dssp ------STTSCCCTTEEEE
T ss_pred ------CCCCCCCCCCEEE
Confidence 2234689999983
No 151
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=74.98 E-value=1.8 Score=27.83 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=37.1
Q ss_pred EEEec--CCCcHHHHHHHHHhccCCCCC-CCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 24 RLSVS--SPIKVRDLRKLIATSSANHLP-IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 24 ~l~v~--~~~TV~dLK~~Ia~~~~~~ip-~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
..+++ ...||.+|-+. .+++ +...-+.+.|..+..+. ..+.-|++||.| ++
T Consensus 9 ~~e~~~~~~~Tl~~LL~~------l~~~~~~~vAVavNg~iVpr~~------~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSA------LKVAQAEYVTVELNGEVLEREA------FDATTVKDGDAVEFL 63 (78)
T ss_dssp EEECSSCSCEEHHHHHHH------HTCSCTTTCCEEETTEECCTTH------HHHCEECSSBCEEEC
T ss_pred EEEcCCCCCCcHHHHHHH------cCCCCCCcEEEEECCEECChHH------cCcccCCCCCEEEEE
Confidence 35666 67899998654 3566 77777889999986432 445689999999 54
No 152
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=74.74 E-value=3.7 Score=25.43 Aligned_cols=51 Identities=12% Similarity=0.263 Sum_probs=34.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCce--EEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENL--RLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~q--RLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
..++++...||.+|.+.+.. ... ...+. .+...|+....+ .-|++||.| ++
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~--~~p-~~~~v~~~v~vNg~~v~~~----------~~L~~gD~V~i~ 71 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFE--RYP-QINNKKFQVAVNEEFVQKS----------DFIQPNDTVALI 71 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHH--HCG-GGTTCCCEEEETTEEECTT----------SEECTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--HCc-chhcceEEEEECCEECCCC----------CCcCCCCEEEEE
Confidence 45666777899999999876 321 11334 677788877532 368999999 43
No 153
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=71.03 E-value=9.1 Score=25.81 Aligned_cols=62 Identities=15% Similarity=0.298 Sum_probs=40.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCC-----------ceEEEecC-eecCCCCCCC--CCCccccCCCCCCEEEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIE-----------NLRLVFRG-KVLDDTQDDD--DRDDVYLQLSNGDSVIAA 87 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e-----------~qRLi~~G-k~L~D~~~~d--~~~L~~~~I~dg~tLlv~ 87 (137)
..++|++++|+.+|-+.+.+ ...+... ...|+.++ ..|+.. +.. +++|.++|+.+|+.|.|-
T Consensus 7 ~~l~v~~~~TL~~lid~L~~--~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~-Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTN--SASLQMKSPAITATLEGKNRTLYMQSVTSIEER-TRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHH--CTTCCCSSCEEEEEETTEEEEEECSSCHHHHHH-HHHHHHSBSGGGTCCTTCEEEEE
T ss_pred EEEEECCchhHHHHHHHHHh--ChHhhccCCeeeeecCCCCCeEEEeCcHHHHHH-hHhhhhCCHHHhCCCCCCEEEEE
Confidence 56899999999999999987 4332222 34444444 233221 000 144899999999998763
No 154
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=70.56 E-value=8 Score=24.85 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=39.1
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032588 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (137)
Q Consensus 11 ~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv~ 87 (137)
+|+|.++.|+ .+.++..+|+.|+-..|.. ..+ -.-.--...|+... | ++-|++|+.| ++.
T Consensus 7 ~i~v~tP~G~---~~~lp~GaT~~D~A~~Ih~--~lg--~~~v~AkVNG~~v~---------L-~~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGD---VISLPIGSTVIDFAYAIHS--AVG--NRMIGAKVDGRIVP---------I-DYKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSC---EEEEETTCBHHHHHHHHCH--HHH--HTEEEEEETTEEEC---------T-TCBCCTTCBEEEEE
T ss_pred eEEEECCCCC---EEEecCCCCHHHHHHHhhh--hhh--cceEEEEECCEEcC---------C-CcccCCCCEEEEEc
Confidence 5788888874 4789999999999777753 211 11111234666553 3 3578999999 653
No 155
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=69.69 E-value=5 Score=25.32 Aligned_cols=49 Identities=14% Similarity=0.090 Sum_probs=36.2
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 25 l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
.++ ...||.+|-+ ..++++...-+.+.|..+..+. ..+.-|++||.| ++
T Consensus 10 ~e~-~~~Tl~~LL~------~l~~~~~~vAV~vNg~iVpr~~------~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 10 REV-QSASVAALMT------ELDCTGGHFAVALNYDVVPRGK------WDETPVTAGDEIEIL 59 (73)
T ss_dssp ECC-CCSBHHHHHH------HTTCCSSSCEEEESSSEECHHH------HTTCBCCTTCEEEEE
T ss_pred EEc-CCCcHHHHHH------HcCCCCCcEEEEECCEECChHH------cCcccCCCCCEEEEE
Confidence 455 6689998854 3667888888889999986321 345689999999 55
No 156
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=69.43 E-value=19 Score=22.96 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=33.3
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC-C-----C-------CCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANH-L-----P-------IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~-i-----p-------~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
.+++ ...||++|.+.+.. ... + . .....+...|+...... -.+.-|++||.|.+
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~--~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~------~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEA--NYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSG------GLATAIADGDSVTI 86 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHH--HSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTT------GGGCBCCTTCEEEE
T ss_pred EEec-CCCCHHHHHHHHHH--HChhHHHHHhccccCCcccCCEEEEECCEEccCcC------CCCcCCCCCCEEEE
Confidence 4664 45799999999986 431 1 1 11356666777664311 12457899999933
No 157
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=66.29 E-value=3.2 Score=26.22 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=32.7
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL 84 (137)
.++++...||.+|.+.+ +++++...+...|+....+ .-|++||.|
T Consensus 24 ~~~~~~~~Tv~dLl~~L------~~~~~~v~VavNg~~v~~~----------~~L~dGD~V 68 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV------GFNTESAIAKVNGKVVLED----------DEVKDGDFV 68 (77)
T ss_dssp CCCCCSSCCHHHHHHTT------TCSSCSSCEEETTEEECSS----------SCCCSSCCC
T ss_pred EEECCCCCcHHHHHHHh------CCCCcCEEEEECCEECCCC----------CCcCCCCEE
Confidence 35667778999996643 4566777788888887532 368899988
No 158
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=64.53 E-value=13 Score=22.46 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=35.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
.++++...||.+|.+.+ ++++....+...|.....+. ..+.-|++||.| ++
T Consensus 9 ~~~~~~~~tv~~ll~~l------~~~~~~v~vavN~~~v~~~~------~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL------DQRQAGAALAINQQIVPREQ------WAQHIVQDGDQILLF 60 (66)
T ss_dssp EECCCTTCCHHHHHHHH------TCCCSSEEEEETTEEECHHH------HTTCCCCTTEEECEE
T ss_pred EEEcCCCCcHHHHHHHc------CCCCCCEEEEECCEECCchh------cCCcCCCCCCEEEEE
Confidence 35677788999998766 34566777778888875321 224578999999 65
No 159
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=63.90 E-value=15 Score=22.08 Aligned_cols=49 Identities=8% Similarity=0.203 Sum_probs=34.9
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032588 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (137)
Q Consensus 25 l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL-lv 86 (137)
+++ ...||.+|.+.+. +++....+...|.....+. -.+.-|++||.| ++
T Consensus 9 ~~~-~~~tv~~ll~~l~------~~~~~v~vavN~~~v~~~~------~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 9 RPL-EGKTLKEVLEEMG------VELKGVAVLLNEEAFLGLE------VPDRPLRDGDVVEVV 58 (64)
T ss_dssp ECC-TTCCHHHHHHHHT------BCGGGEEEEETTEEEEGGG------CCCCCCCTTCEEEEE
T ss_pred EEc-CCCcHHHHHHHcC------CCCCcEEEEECCEECCccc------cCCcCCCCCCEEEEE
Confidence 456 6789999987663 4566777788888875321 234579999999 54
No 160
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=63.58 E-value=3.2 Score=21.24 Aligned_cols=14 Identities=14% Similarity=0.555 Sum_probs=11.6
Q ss_pred chHHHHHHHhhccc
Q 032588 118 TSRWKRKLLLFSPQ 131 (137)
Q Consensus 118 ~~~~~~~~~~~~~~ 131 (137)
-.||+++++..|.+
T Consensus 12 iarwekriayalkn 25 (26)
T 1hji_B 12 IARWEKRIAYALKN 25 (26)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 46899999998865
No 161
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=62.75 E-value=26 Score=23.33 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=49.7
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE--EEEecCCC
Q 032588 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV--IAAVKPKP 92 (137)
Q Consensus 25 l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tL--lv~~~p~~ 92 (137)
-..+-...+..||..++. +.++.-+.-.+.+.+..|..+++ |.+-+++-...| -|-+++.+
T Consensus 7 qhmDI~epL~~Lk~LLe~--Rl~i~L~~y~f~LQd~~L~~~k~-----LvdQcVqgeGlVQinvqik~~~ 69 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEP--RLQCSLDAHEICLQDIQLDPDRS-----LFDQGVKTDGTVQLSVQVISYQ 69 (89)
T ss_dssp EEEESSSBGGGHHHHSHH--HHCSCCSSCEEEETTEECCTTSB-----TTTSSCCCCSEEEEEEEEECCT
T ss_pred hhccccCcHHHHHHHHHH--HhcCCcccCeEEeeccccCCCcc-----HHHhhcccccEEEEEEEEEecC
Confidence 356677889999999998 99999999999999999988888 999999877777 33444443
No 162
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=61.72 E-value=31 Score=22.77 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=32.9
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-ecCe
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-FRGK 60 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi-~~Gk 60 (137)
+.|+|++-.- ... +-+.||++.+..+|+.+|.. ...+ +.+.++ |++.
T Consensus 11 ~~~KVK~yy~-DDI-iAIrvP~di~~~~L~dKi~~--RLk~--~~~~l~~ykde 58 (85)
T 1ip9_A 11 KTTKIKFYYK-DDI-FALMLKGDTTYKELRSKIAP--RIDT--DNFKLQTKLFD 58 (85)
T ss_dssp CCEEEEECBT-TCC-EEEEECSCCCHHHHHHHHHH--HHTS--SCEEEEECCSS
T ss_pred CceEEEEEec-CcE-EEEECCCCCCHHHHHHHHHH--Hhcc--cceEEEEecCC
Confidence 4466666554 334 78999999999999999998 6666 344443 4443
No 163
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=58.69 E-value=13 Score=23.96 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=32.3
Q ss_pred CCCCCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe
Q 032588 1 MGMGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF 57 (137)
Q Consensus 1 ~~~~~~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~ 57 (137)
||......+-+|+|+.+ ++++|-.+|++.++. ...+++...+++.
T Consensus 1 mg~~~~~~m~tlfV~nL----------~~~~tee~L~~~F~~--~G~i~v~~v~i~~ 45 (95)
T 2lkz_A 1 MGHHHHHHMDTIILRNI----------APHTVVDSIMTALSP--YASLAVNNIRLIK 45 (95)
T ss_dssp CCCCSSCCCCEEEEESC----------CTTCCHHHHHHHSTT--TCCCCGGGEECCC
T ss_pred CCcccCCccCEEEEeCC----------CCcCCHHHHHHHHHh--hCCccEEEEEEEe
Confidence 67776777777888765 355699999998876 4446777777653
No 164
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=58.47 E-value=8.7 Score=26.08 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=29.3
Q ss_pred CceEEEEEeCCC------CCcEEEEecCCCcHHHHHHHHHhccCCCCC
Q 032588 8 ESVEITVKTIGP------APPSRLSVSSPIKVRDLRKLIATSSANHLP 49 (137)
Q Consensus 8 ~~m~I~VKt~~~------~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip 49 (137)
++|.|+|...+. ...+.+-|+++.+..+|..+|.. +.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~--Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINS--KISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHH--HHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHH--HHcCC
Confidence 457777776432 22267899999999999999988 76654
No 165
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=56.89 E-value=33 Score=21.39 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=35.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC------C-----CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSANH------L-----PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~~------i-----p~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLl 85 (137)
.++++...||.+|.+.+.. ... + ......+...|+...... -.+.-|++||.|.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~--~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~------~~~~~l~~gD~V~ 82 (90)
T 2g1e_A 18 EETFNGISKISELLERLKV--EYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK------GLDTEIKDDDKID 82 (90)
T ss_dssp EEEESSCCBHHHHHHHHHH--HSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC------SSSCBCCTTCEEE
T ss_pred EEEcCCCCcHHHHHHHHHH--HCcchhhhccccccCcCcceEEEECCEEccccC------CCCcCCCCCCEEE
Confidence 4567767899999999876 421 0 113456777887764211 2344789999983
No 166
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=55.59 E-value=43 Score=23.31 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=37.0
Q ss_pred CCCceEEEEEeCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCC--------CCceEEE
Q 032588 6 ISESVEITVKTIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLP--------IENLRLV 56 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~-l~v~~~~TV~dLK~~Ia~~~~~~ip--------~e~qRLi 56 (137)
.+++.-+.|-...+..++. |.|+..+|+.||=..+=. +.|.+ +++..|+
T Consensus 4 ~~~tf~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~--kag~~~~~~~~~~~~dYvLv 61 (117)
T 2c5l_C 4 EEESFFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLC--KAKYSLSILSNPNPSDYVLL 61 (117)
T ss_dssp -CCEEEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHH--HTTTSHHHHHSCCGGGEEEE
T ss_pred cCceEEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHH--HcCCccccccCCCchHeEEE
Confidence 4578889999888888876 799999999998766655 56654 5666664
No 167
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=54.69 E-value=43 Score=22.07 Aligned_cols=72 Identities=6% Similarity=-0.051 Sum_probs=54.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC--C--CCCceEEEecCee--cCCCCCCCCCCccccCCCCCCE
Q 032588 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH--L--PIENLRLVFRGKV--LDDTQDDDDRDDVYLQLSNGDS 83 (137)
Q Consensus 10 m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~--i--p~e~qRLi~~Gk~--L~D~~~~d~~~L~~~~I~dg~t 83 (137)
+-|....-+.--...+.|+...|+.++-++++.. .-| + .|.-.|..++|.. +..+.+ +.+.||+.-+.
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h-~VGrrv~p~pg~lrVr~~G~~~~~Pr~mt-----VaeaGl~Pme~ 77 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYH-CVNRRVAPREGVMRVRKHRSTELFPRDMT-----IAESGLNPTEV 77 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHT-TBTTTBCCCSSCEEEEETTCSCBCCTTCB-----HHHHCCCTTCE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhh-hcceeeCCCCCcEEEEECCCcccCCCCCE-----eeccCCCcceE
Confidence 5566666666554568999999999999999862 223 2 2346899999988 877777 99999999999
Q ss_pred E-EEE
Q 032588 84 V-IAA 87 (137)
Q Consensus 84 L-lv~ 87 (137)
| ++.
T Consensus 78 vev~~ 82 (84)
T 3ge3_C 78 IDVVF 82 (84)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 9 654
No 168
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=53.68 E-value=31 Score=24.13 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=52.6
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC------ceEEE---ecCee--cCCCCCCCCCCcc
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE------NLRLV---FRGKV--LDDTQDDDDRDDV 74 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e------~qRLi---~~Gk~--L~D~~~~d~~~L~ 74 (137)
....+-..|-....++ .++.++...|+.+++..+++ +.+..-+ .+.|+ +.|-. |+++.. -.
T Consensus 6 ~~Dei~~~VY~~Dhsy-~tvr~~v~~sa~eIl~~va~--kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~-----sv 77 (120)
T 2dhz_A 6 SGDEIFCRVYMPDHSY-VTIRSRLSASVQDILGSVTE--KLQYSEEPAGREDSLILVAVSSSGEKVLLQPTED-----CV 77 (120)
T ss_dssp SCCCEEECEECTTSCC-CCEEECTTCCHHHHHHHHHH--HSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCS-----CH
T ss_pred CCCcEEEEEEeccCce-EEEEEeccccHHHHHHHHHH--HhccccccccccCceEEEEEccCCcEeecCCcce-----EE
Confidence 3455667777777776 77999999999999999998 8776544 66665 55654 444443 33
Q ss_pred ccCCCCCCEEEEEec
Q 032588 75 YLQLSNGDSVIAAVK 89 (137)
Q Consensus 75 ~~~I~dg~tLlv~~~ 89 (137)
.-.|.-+..|+++.+
T Consensus 78 ~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 78 FTALGINSHLFACTR 92 (120)
T ss_dssp HHHSCSSEEEEEECT
T ss_pred EeeccccceEEEeeh
Confidence 344566667776665
No 169
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=50.89 E-value=9.4 Score=24.64 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=21.9
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCC
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLP 49 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip 49 (137)
+.|-|+++.+..+|..+|.. +.+..
T Consensus 4 ~~i~V~~~i~f~~L~~kI~~--kl~~~ 28 (77)
T 1pqs_A 4 FTLLVEKVWNFDDLIMAINS--KISNT 28 (77)
T ss_dssp EEEECTTCCCSHHHHHHHHH--HTTTT
T ss_pred EEEEeCCCCCHHHHHHHHHH--HHccc
Confidence 56899999999999999988 77754
No 170
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=50.33 E-value=36 Score=22.39 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=38.2
Q ss_pred CCceEEEEEeCCCCCcE---EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032588 7 SESVEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~---~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~Gk 60 (137)
...|.|.+|..+.-..+ ..-|+.+.|++++...|.. ..++++++-=.+|-+.
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRk--rL~l~~~~alFlyVnn 57 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKK--FLKLVASEQLFIYVNQ 57 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHH--HTTCCSSSCCEEEETT
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHH--HhCCCCCCeEEEEECC
Confidence 35688888887664422 3789999999999999988 8888887644455444
No 171
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=46.50 E-value=40 Score=23.11 Aligned_cols=34 Identities=3% Similarity=-0.047 Sum_probs=28.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~ 42 (137)
..+.|.+-.++|-. +.++++.++|+.++|+.+-+
T Consensus 18 ~~v~v~~LlPnGi~-i~l~~~~~~tl~eiK~~lw~ 51 (108)
T 2v1y_A 18 PRILVECLLPNGMI-VTLECLREATLITIKHELFK 51 (108)
T ss_dssp SEEEEEEECTTSCE-EEEEEETTCBHHHHHHHHHH
T ss_pred CcEEEEEEcCcEEE-EEEEeeccccHHHHHHHHHH
Confidence 55777777777755 77899999999999998876
No 172
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=45.84 E-value=1.1e+02 Score=24.18 Aligned_cols=74 Identities=12% Similarity=0.127 Sum_probs=50.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEEecC---------eecCCCCCCCCCCccccC
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLVFRG---------KVLDDTQDDDDRDDVYLQ 77 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip-~e~qRLi~~G---------k~L~D~~~~d~~~L~~~~ 77 (137)
..+.+.|..+++.. ..+.+++++|+.+|=+.|+. ..|+. .+-.-|.+.. .-|.-++. +...+
T Consensus 84 ~~~~~~V~l~dg~~-~~~~vd~~tt~~el~~~v~~--~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~-----l~~q~ 155 (371)
T 3ivf_A 84 KQRPLKIRMLDGTV-KTIMVDDSKTVTDMLMTICA--RIGITNHDEYSLVRELMEEKKDDELNWLDHGRT-----LREQG 155 (371)
T ss_dssp CEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHH--HTTCSCGGGEEEECCC----------CCCTTSB-----TGGGT
T ss_pred ceeEEEEECcCCCE-EEEEECCCCCHHHHHHHHHH--HcCCCCccccEEEEEecccccchHHHHHhcCch-----hHhhC
Confidence 34778888888865 78999999999999999998 78865 4446666542 12322222 55555
Q ss_pred CCCCCEEEEEec
Q 032588 78 LSNGDSVIAAVK 89 (137)
Q Consensus 78 I~dg~tLlv~~~ 89 (137)
.....++...++
T Consensus 156 ~~~~~~l~frvK 167 (371)
T 3ivf_A 156 VEEHETLLLRRK 167 (371)
T ss_dssp CCTTCEEEEEEC
T ss_pred CCCCceEEEEEE
Confidence 555666755443
No 173
>2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens}
Probab=42.42 E-value=7.4 Score=22.74 Aligned_cols=15 Identities=47% Similarity=0.603 Sum_probs=11.3
Q ss_pred cCCcccccccccCCc
Q 032588 103 IDDDDLDLKFKLPQS 117 (137)
Q Consensus 103 ~~~~~~~~~~~lp~~ 117 (137)
+||+|+++-||+|.+
T Consensus 29 dDd~D~EIvfK~P~~ 43 (44)
T 2aff_B 29 DDDKDDEIVFKQPIS 43 (44)
T ss_dssp GGGGSCSEEESSCC-
T ss_pred CCCccceEEeecCCC
Confidence 567777899999875
No 174
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=41.84 E-value=25 Score=27.38 Aligned_cols=48 Identities=17% Similarity=0.058 Sum_probs=37.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEec
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFR 58 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~-e~qRLi~~ 58 (137)
..+.+.|..+++.. ..+.|++.+|+.+|=+.|++ ..|+.. +-.-|.|.
T Consensus 16 ~~~~~~V~lldgt~-~~~~vd~~tt~~el~~~v~~--~l~L~e~~~FgL~~~ 64 (296)
T 3qij_A 16 FQGHCKVSLLDDTV-YECVVEKHAKGQDLLKRVCE--HLNLLEEDYFGLAIW 64 (296)
T ss_dssp -CCEEEEECTTSCE-EEEECCTTCBHHHHHHHHHH--HHTCSSGGGEEEEEE
T ss_pred ceEEEEEEccCCCE-EEEEECCCCCHHHHHHHHHH--HcCCCCcceeEEEEE
Confidence 45899999998876 88999999999999999998 788763 33555543
No 175
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=41.30 E-value=33 Score=29.28 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=54.0
Q ss_pred CceEEEEEeCCCCCc-EE----EEecCCCcHHHHHHHHHhccCCCCCCCceEEEec------CeecC-CCCCCCCCCccc
Q 032588 8 ESVEITVKTIGPAPP-SR----LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR------GKVLD-DTQDDDDRDDVY 75 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~-~~----l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~------Gk~L~-D~~~~d~~~L~~ 75 (137)
..+-|++|.-..... +. +-|+.+.+|.+|-..|.+ ..|+|++.--.+|. ...|. -+.+ +..
T Consensus 129 ~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~--~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t-----~~~ 201 (530)
T 2ylm_A 129 HDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCD--RAGFIQDTSLILYEEVKPNLTERIQDYDVS-----LDK 201 (530)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHH--HHTCCTTCCEEEEEEEETTEEEECCCSSSB-----HHH
T ss_pred CcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHH--HcCCCCCCceEEEEecCCCceeEccccccc-----HHH
Confidence 358899995544331 22 578899999999999988 89999987444443 22344 2334 999
Q ss_pred c--CCCCCCEEEEEecC
Q 032588 76 L--QLSNGDSVIAAVKP 90 (137)
Q Consensus 76 ~--~I~dg~tLlv~~~p 90 (137)
+ +|.+||+|++-..+
T Consensus 202 ~~~eL~~GdII~fQ~~~ 218 (530)
T 2ylm_A 202 ALDELMDGDIIVFQKDD 218 (530)
T ss_dssp HSTTCCTTEEEEEEECC
T ss_pred HHhcccCCCEEEEEecC
Confidence 9 99999999775543
No 176
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=40.30 E-value=36 Score=22.23 Aligned_cols=30 Identities=3% Similarity=-0.062 Sum_probs=22.6
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHH
Q 032588 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (137)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dL 36 (137)
...+++|++....+.. +.+++++..|+.+.
T Consensus 3 ~~~m~~V~~~~~~g~~-~~v~~~~g~tLL~a 32 (108)
T 2bt6_A 3 SGDKITVHFINRDGET-LTTKGKIGDSLLDV 32 (108)
T ss_dssp --CEEEEEEECTTSCE-EEEEEETTCBHHHH
T ss_pred CCceEEEEEECCCCCE-EEEEECCCChHHHH
Confidence 4567889998766654 68899999999875
No 177
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=38.48 E-value=33 Score=26.17 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=45.1
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEec---Ce--ecCCCCCCCCCCccccCCCCCC
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFR---GK--VLDDTQDDDDRDDVYLQLSNGD 82 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~-qRLi~~---Gk--~L~D~~~~d~~~L~~~~I~dg~ 82 (137)
+|.+.|...++ . ..+.+++.+|+.+|=+.|+. ..|+.... .-|.|. |. -|+.++. +.+.+++.+.
T Consensus 1 ~i~~~V~l~d~-~-~~~~v~~~tt~~el~~~v~~--~l~L~e~~~FgL~~~~~~~~~~wLd~~~~-----l~~q~~~~~~ 71 (294)
T 1ef1_A 1 TISVRVTTMDA-E-LEFAIQPNTTGKQLFDQVVK--TIGLREVWFFGLQYQDTKGFSTWLKLNKK-----VTAQDVRKES 71 (294)
T ss_dssp CEEEEEEETTE-E-EEEEECTTCBHHHHHHHHHH--HHTCCCGGGEEEEEEBTTSCEEECCSSSB-----GGGSCBCCCS
T ss_pred CEEEEEEECCc-e-EEEEECCCCcHHHHHHHHHH--HcCCCCcceeEEEEECCCCceeecccccC-----HHhhccCCCC
Confidence 37788888887 3 67999999999999999998 77875433 555542 22 2333333 6665555554
Q ss_pred EE
Q 032588 83 SV 84 (137)
Q Consensus 83 tL 84 (137)
..
T Consensus 72 ~~ 73 (294)
T 1ef1_A 72 PL 73 (294)
T ss_dssp SE
T ss_pred CE
Confidence 44
No 178
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=35.87 E-value=74 Score=21.02 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=32.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCce-EEEecCeec
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENL-RLVFRGKVL 62 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~q-RLi~~Gk~L 62 (137)
+.+.|++.+|=-++|+.|+. .+++.+..- -++..||.-
T Consensus 30 ~~F~V~~~AnK~eIK~AVE~--lf~VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 30 IVLKVAKDATKAEIKAAVQK--LFEVEVEVVNTLVVKGKVK 68 (93)
T ss_dssp EEEEECSSCCHHHHHHHHHH--HSCCCCCEEEEEEECCCBC
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCceEEEEEEEeCCcee
Confidence 78999999999999999999 999998884 456777754
No 179
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=35.78 E-value=86 Score=24.66 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=45.1
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec-------CeecCCCCCCCCCCcccc----C
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-------GKVLDDTQDDDDRDDVYL----Q 77 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~-------Gk~L~D~~~~d~~~L~~~----~ 77 (137)
.+-|+|-...++. ..|.|++++|++||=+.++. +.+++...--.+|- -+.|.|.+. +.+. .
T Consensus 31 k~ivkv~~~D~ss-~~l~V~~~~TA~dv~~~L~~--k~~~~~~~~W~L~E~~~~l~lER~ledhE~-----V~dvl~~W~ 102 (281)
T 4gmv_A 31 KLVIRVHMSDDSS-KTMMVDERQTVRQVLDNLMD--KSHCGYSLDWSLVETVSELQMERIFEDHEN-----LVENLLNWT 102 (281)
T ss_dssp EEEEEEEETTSCE-EEEEEETTCBHHHHHHHHHH--HSCCCCCTTCEEEEEEGGGTEEEECCTTSB-----HHHHHTTSC
T ss_pred cEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHH--hcCCCCCCCeEEEEEcCCccceeccccchh-----HHHHHHhcc
Confidence 3556666666644 78999999999999988887 77765444222221 255666665 4432 3
Q ss_pred CCCCCEEEEEe
Q 032588 78 LSNGDSVIAAV 88 (137)
Q Consensus 78 I~dg~tLlv~~ 88 (137)
......+++..
T Consensus 103 ~ds~n~l~f~~ 113 (281)
T 4gmv_A 103 RDSQNKLIFME 113 (281)
T ss_dssp TTCCCEEEEEC
T ss_pred cCCCceEEEEe
Confidence 44556665543
No 180
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=35.75 E-value=41 Score=26.01 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=46.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEe--cCee--cCCCCCCCCCCccccCCCCC
Q 032588 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVF--RGKV--LDDTQDDDDRDDVYLQLSNG 81 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~-e~qRLi~--~Gk~--L~D~~~~d~~~L~~~~I~dg 81 (137)
...+.+.|...++ . +.+.+++++|+.+|=+.|+. ..|+.- +-.-|.| .|.. |..+.. +.+.+++.+
T Consensus 20 ~~~~~~~V~lldg-~-~~~~v~~~t~~~el~~~v~~--~l~L~e~~~FgL~~~~~~~~~wL~~~~~-----i~~q~~~~~ 90 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-E-MEFNCEMKWKGKDLFDLVCR--TLGLRETWFFGLQYTIKDTVAWLKMDKK-----VLDHDVSKE 90 (314)
T ss_dssp -CEEEEEEECSSC-E-EEEEEETTCBHHHHHHHHHH--HHTCCCGGGEEEEEEETTEEEECCTTSB-----GGGSSCCCS
T ss_pred CCeeEEEEEeCCc-e-EEEEeCCCCcHHHHHHHHHH--HhCCCCCccceEEEEeCCcCeeCCCccC-----HHHcCCCCC
Confidence 3568888888887 4 77999999999999999998 778763 3344544 3332 444444 666655544
Q ss_pred CEE
Q 032588 82 DSV 84 (137)
Q Consensus 82 ~tL 84 (137)
...
T Consensus 91 ~~~ 93 (314)
T 1h4r_A 91 EPV 93 (314)
T ss_dssp SSE
T ss_pred CCE
Confidence 433
No 181
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=35.54 E-value=95 Score=20.48 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=47.2
Q ss_pred eEEEEE-eCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCCCCceEEEec-CeecCCCCCCCCCCccccCCCCCCEE-E
Q 032588 10 VEITVK-TIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-GKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (137)
Q Consensus 10 m~I~VK-t~~~~~~~~-l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~-Gk~L~D~~~~d~~~L~~~~I~dg~tL-l 85 (137)
++.+|- +..++.++. +.|+..+-...+-+-.++ .+++|+..--+|-. |--+.-.++ -...-++.|+.| +
T Consensus 11 VtFkItltSdpklpfkvlsVPE~~PftAVlkfaaE--eF~vp~~TsAiiT~dGiGInP~Qt-----AGnvFlKhGseLrl 83 (92)
T 1j0g_A 11 VSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAE--EFKVPAATSAIITNDGIGINPAQT-----AGNVFLKHGSELRI 83 (92)
T ss_dssp EEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHH--HTTCCSSSEEEECTTSCCCCCSSB-----HHHHHHHTCSEEEE
T ss_pred EEEEEEEccCCCCCceEEecCccCchHHHHHHHHH--HcCCCccceEEEecCCcccChhhc-----cchhhhhcCceeEe
Confidence 444443 445666665 699998877777777777 89999988777755 433444444 555567888888 5
Q ss_pred E
Q 032588 86 A 86 (137)
Q Consensus 86 v 86 (137)
+
T Consensus 84 I 84 (92)
T 1j0g_A 84 I 84 (92)
T ss_dssp E
T ss_pred c
Confidence 4
No 182
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=33.94 E-value=65 Score=22.10 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=24.7
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHH
Q 032588 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (137)
Q Consensus 5 ~~~~~m~I~VKt~~~~~~~~l~v~~~~TV~dL 36 (137)
...++++|++....+.. ..+.+++..|+.+.
T Consensus 17 ~~~~M~~Vt~~~~~G~~-~~v~~~~G~tLL~a 47 (126)
T 3hui_A 17 RGSHMAKINFVDHTGET-RTVEVEEGATVMEA 47 (126)
T ss_dssp TTCSEEEEEEECTTSCE-EEEEEETTSBHHHH
T ss_pred CCCCceEEEEEeCCCCE-EEEEECCCCcHHHH
Confidence 34578899999777754 78999999999885
No 183
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=33.71 E-value=71 Score=26.86 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=39.4
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEEec
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLVFR 58 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~--e~qRLi~~ 58 (137)
..+.+.|...+|.. ..+.+++.+|+.+|-+.|+. ..|+.. +-.-|.+.
T Consensus 215 ~~~~~~V~l~dg~~-~~~~v~~~tt~~el~~~v~~--~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 215 QEMTSTVYCHGGGS-CKITINSHTTAGEVVEKLIR--GLAMEDSRNMFALFEY 264 (555)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHH--HTTCTTCCSEEEEEEE
T ss_pred CCcceEEEecCCCe-EEEEeCCCCcHHHHHHHHHH--HcCCCCCCCceEEEEE
Confidence 45888999998876 78999999999999999998 899874 45666553
No 184
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Probab=30.07 E-value=40 Score=25.97 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=17.1
Q ss_pred ccCCcccccccccCC---------------cchHHHHHHH
Q 032588 102 CIDDDDLDLKFKLPQ---------------STSRWKRKLL 126 (137)
Q Consensus 102 ~~~~~~~~~~~~lp~---------------~~~~~~~~~~ 126 (137)
++++++....|+.|+ |..|||..|.
T Consensus 32 ~~~~~~~~~~yk~~~~ksl~E~~~lD~~DESL~kwKesLl 71 (219)
T 1doa_B 32 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALL 71 (219)
T ss_dssp SSSSCCCSCCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHH
T ss_pred cccccccccCcccCCccCHHHHHhhCcchhHHHHHHHHhc
Confidence 444444456688876 6789999984
No 185
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=28.68 E-value=2.1e+02 Score=24.49 Aligned_cols=68 Identities=9% Similarity=0.142 Sum_probs=47.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEEecC---e--ecCCCCCCCCCCccccCCCCC
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLVFRG---K--VLDDTQDDDDRDDVYLQLSNG 81 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip-~e~qRLi~~G---k--~L~D~~~~d~~~L~~~~I~dg 81 (137)
..|.+.|..+++ . +.+.|++++|+.+|=..|+. ..|+. .+-.-|.|.. . .|..+.. +...+++.+
T Consensus 3 k~i~v~V~llDg-t-~e~~vd~~tt~~ell~~V~~--~LgL~e~~~FGL~~~d~~~~~~WLd~~k~-----i~~q~~~~~ 73 (575)
T 2i1j_A 3 KSMNVRVTTMDA-E-LEFAIQQTTTGKQLFDQVVK--TIGLREVWFFGLQYTDSKGDLTWIKLYKK-----VMQQDVKKE 73 (575)
T ss_dssp CEEEEEEECSSC-E-EEEEEETTCBHHHHHHHHHH--HHTCCCGGGEEEEEEBTTSCEEECCTTSB-----GGGSCBCCC
T ss_pred ceEEEEEEeCCC-e-EEEEECCCCCHHHHHHHHHH--HcCCCCccceeEEEEecCcchhHhhcccc-----HHHhcccCC
Confidence 578999999887 3 67999999999999999988 77875 3335665532 1 2333333 666655555
Q ss_pred CEE
Q 032588 82 DSV 84 (137)
Q Consensus 82 ~tL 84 (137)
..+
T Consensus 74 ~~~ 76 (575)
T 2i1j_A 74 NPL 76 (575)
T ss_dssp SSE
T ss_pred CCe
Confidence 544
No 186
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=28.58 E-value=1.2e+02 Score=23.51 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=38.9
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec-------CeecCCCCCCCCCCcccc--CCCCCC
Q 032588 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-------GKVLDDTQDDDDRDDVYL--QLSNGD 82 (137)
Q Consensus 12 I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~-------Gk~L~D~~~~d~~~L~~~--~I~dg~ 82 (137)
|+|-...+. ...|.|++++|++||=+.++. +.++..+.--.++- -+.|.|.+. +.+. ......
T Consensus 11 vkv~~~d~s-s~~l~V~~~mta~ev~~~l~~--k~~~~~~~~W~l~E~~~~l~lER~ledhE~-----V~ev~~~~~s~~ 82 (256)
T 3hk0_A 11 VKVFSEDGT-SKVVEILADMTARDLCQLLVY--KSHSVDDNSWTLVEHHPHLGLERCLEDHEL-----VVQVESTMASES 82 (256)
T ss_dssp EEEEETTSC-EEEEEECTTCBHHHHHHHHHC--CC-------EEEEEEETTTTEEEECCTTSB-----HHHHHHTCCSSC
T ss_pred EEEEecCCc-EEEEEECCCCCHHHHHHHHHH--hcCCCCCCCEEEEEECCCcccccccccchh-----HHHHHhccCCCc
Confidence 444445554 378999999999999999987 77765444333322 355666554 3322 233445
Q ss_pred EEEEEec
Q 032588 83 SVIAAVK 89 (137)
Q Consensus 83 tLlv~~~ 89 (137)
.+++...
T Consensus 83 ~l~f~k~ 89 (256)
T 3hk0_A 83 KFLFRKN 89 (256)
T ss_dssp EEEEEEC
T ss_pred eEEEecc
Confidence 6655543
No 187
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=28.05 E-value=60 Score=22.16 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=31.2
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec
Q 032588 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR 58 (137)
Q Consensus 9 ~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~ 58 (137)
.+.|++-..+. ...|.++...+..+|.+++.+ .+|-+ .-|.|.
T Consensus 8 dvRiKfE~~GE--kRIi~f~RPv~f~eL~~Kv~~--~fGq~---ldL~y~ 50 (103)
T 2cu1_A 8 DVRVKFEHRGE--KRILQFPRPVKLEDLRSKAKI--AFGQS---MDLHYT 50 (103)
T ss_dssp EEEEEEEETTE--EEEEEEESSCCHHHHHHHHHH--HHSSC---EEEEEC
T ss_pred cEEEEEEecCe--EEEEeccCCccHHHHHHHHHH--HhCCe---eeEEEe
Confidence 35555555433 368999999999999999998 88764 345555
No 188
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=27.72 E-value=82 Score=20.48 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHH
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dL 36 (137)
.+++|++....+.. +.+.+++..|+.+.
T Consensus 4 ~m~~v~~~~~~g~~-~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 4 DVVNVVFVDRSGQR-IPVSGRVGDNVLHL 31 (109)
T ss_dssp CEEEEEEECTTSCE-EEEEEETTCBHHHH
T ss_pred CcEEEEEEcCCCCE-EEEEECCCCcHHHH
Confidence 56788887766654 67899999999875
No 189
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=27.43 E-value=1e+02 Score=20.22 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=32.5
Q ss_pred cEEEEecCCCcHHHHHHHHHhccCCCCCCCceE-EEecCeec
Q 032588 22 PSRLSVSSPIKVRDLRKLIATSSANHLPIENLR-LVFRGKVL 62 (137)
Q Consensus 22 ~~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~qR-Li~~Gk~L 62 (137)
.+.+.|++.+|=-++|+.|+. .+++.+..-. ++..||.-
T Consensus 23 ~~~F~V~~~AnK~qIK~aVe~--lf~VkV~~VnT~~~~gK~k 62 (92)
T 3tve_T 23 KYTFWVHPKATKTEIKNAVET--AFKVKVVKVNTLHVRGKKK 62 (92)
T ss_dssp EEEEEECTTCCHHHHHHHHHH--HTTCCEEEEEEEEECCCEE
T ss_pred EEEEEECCCCCHHHHHHHHHH--HhCCceeeeeeeeeCCcee
Confidence 378999999999999999999 9999988844 46777654
No 190
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=27.38 E-value=1.4e+02 Score=19.81 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=39.7
Q ss_pred CceEEEEEeCCCCC--cEEEEe-cCCCcHHHHHHHHHhccCCCCCCCceE--EEe------cCeecCCCCCCCCCCcccc
Q 032588 8 ESVEITVKTIGPAP--PSRLSV-SSPIKVRDLRKLIATSSANHLPIENLR--LVF------RGKVLDDTQDDDDRDDVYL 76 (137)
Q Consensus 8 ~~m~I~VKt~~~~~--~~~l~v-~~~~TV~dLK~~Ia~~~~~~ip~e~qR--Li~------~Gk~L~D~~~~d~~~L~~~ 76 (137)
+.|.|+-|-.+... +-.+-+ +..+||.||=.+|+. .. .++.+ +++ .|+.. =.++
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~--di---~~~fkyA~VwG~saK~~~qrV----------gldh 74 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHK--NL---IKEFKYALVWGLSVKHNPQKV----------GKDH 74 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCT--TC---TTTEEEEEEBSTTSSSSSEEE----------CSSC
T ss_pred CeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHH--HH---HhhccEEEEecccccCCCEEC----------CCCc
Confidence 34666666555421 123777 888999999999976 33 22222 221 23333 2234
Q ss_pred CCCCCCEE-EEEec
Q 032588 77 QLSNGDSV-IAAVK 89 (137)
Q Consensus 77 ~I~dg~tL-lv~~~ 89 (137)
.|++||.| ++..+
T Consensus 75 ~L~d~DVV~Iv~~~ 88 (93)
T 2eki_A 75 TLEDEDVIQIVKKS 88 (93)
T ss_dssp CCCSSEEECEEECC
T ss_pred EecCCCEEEEEeCC
Confidence 67899999 77653
No 191
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=26.64 E-value=2.1e+02 Score=25.09 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=39.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC--CCCC--------ceEEEecCe--e----cCCCCCCCCCCccccCCCCCCEEEE
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSANH--LPIE--------NLRLVFRGK--V----LDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~~--ip~e--------~qRLi~~Gk--~----L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
..+.++.+.|+.+|-+.+.. ... +..- ..+++|... . ..+.. +++|.++|+.+|+.|.|
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l---~~~l~~l~~~~~~~~~~ 788 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTN--SASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNL---SKTLKELGLVDGQELAV 788 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHH--CTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGG---GSBTTTTTCCTTCEEEE
T ss_pred EEEEECCcChHHHHHHHHHh--hhccCcccceEEEEccCCCcEEEecCccchhhhhHhhh---cCCHHHcCCCCCCEEEE
Confidence 56888888999999888887 533 3221 246676532 1 11222 25699999999999876
Q ss_pred E
Q 032588 87 A 87 (137)
Q Consensus 87 ~ 87 (137)
-
T Consensus 789 ~ 789 (805)
T 2nvu_B 789 A 789 (805)
T ss_dssp E
T ss_pred E
Confidence 4
No 192
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=25.61 E-value=1.3e+02 Score=19.60 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=33.4
Q ss_pred CceEEEEEeCCCCCcEEEEec--CCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032588 8 ESVEITVKTIGPAPPSRLSVS--SPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~--~~~TV~dLK~~Ia~~~~~~ip~e~qRLi~~G 59 (137)
+.++|+.|.-..- ..+.++ ...+..+|..+++. ..+++....-+-|..
T Consensus 5 ~~l~vKskf~aE~--RRFs~d~~~~~~fe~f~~lv~~--lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 5 SIVEVKSKFDAEF--RRFALPRASVSGFQEFSRLLRA--VHQIPGLDVLLGYTD 54 (86)
T ss_dssp CEEEEEEEETTEE--EEEEEEGGGCCCHHHHHHHHHH--HTTCTTCCCEEEEEC
T ss_pred CEEEEEeecCCee--eEeEccCCCCCCHHHHHHHHHH--HcCCCCCCEEEEEEC
Confidence 4566666653332 456666 45899999999998 777877777777763
No 193
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=25.06 E-value=95 Score=19.64 Aligned_cols=30 Identities=20% Similarity=0.024 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHH
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRK 38 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~ 38 (137)
.+++|+|....+.. ..+++++..|+.+.=.
T Consensus 3 ~~~~v~~~~~~~~~-~~~~~~~g~tlL~a~~ 32 (98)
T 1jq4_A 3 RVHTITAVTEDGES-LRFECRSDEDVITAAL 32 (98)
T ss_dssp CEEEEEEEETTTEE-EEEEEESCCTHHHHHH
T ss_pred CcEEEEEEecCCCc-EEEEeCCCChHHHHHH
Confidence 36788888665544 6789999999988643
No 194
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=25.00 E-value=1.1e+02 Score=26.79 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=38.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEEe
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLVF 57 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK~~Ia~~~~~~ip-~e~qRLi~ 57 (137)
..|.+.|...++.. ..+.|++.+|+.+|-+.|+. ..|+. .+-.-|.+
T Consensus 262 ~~i~~~V~llDgt~-~~~~vds~Tt~~ell~~V~~--~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTT-KTLLTDSATTARELCNALAD--KISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHH--HTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCce-EEEEEccCCcHHHHHHHHHH--HcCCcccccceeEE
Confidence 46889999998875 88999999999999999998 77764 34466655
No 195
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=24.95 E-value=48 Score=23.87 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=38.8
Q ss_pred EEEEecCCCcHHHHHHHHHhccCC----C-------CCCC----ceE-----EEecCeecCCCCCCCCCCccccCCCCCC
Q 032588 23 SRLSVSSPIKVRDLRKLIATSSAN----H-------LPIE----NLR-----LVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (137)
Q Consensus 23 ~~l~v~~~~TV~dLK~~Ia~~~~~----~-------ip~e----~qR-----Li~~Gk~L~D~~~~d~~~L~~~~I~dg~ 82 (137)
+.|-.-.++|+.||=..|.+.... | +.|+ +.+ -++.|+.-. +|+++|.+++..-||
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~----dd~kTL~~~rF~iGD 131 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGT----DDSMTLQSQKFQIGD 131 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCT----TTTCBTGGGTCCTTC
T ss_pred eEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCC----cccccHHHCCCcCCC
Confidence 456666889999999888762111 1 2223 111 123333322 345669999999999
Q ss_pred EEEEEecC
Q 032588 83 SVIAAVKP 90 (137)
Q Consensus 83 tLlv~~~p 90 (137)
.|-|.+.|
T Consensus 132 yidvaI~p 139 (143)
T 4a6q_A 132 YLDIAITP 139 (143)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99665544
No 196
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=24.93 E-value=1.3e+02 Score=20.33 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHhccCCCCCCC--ceEEEe--cCeecCCCCC
Q 032588 31 IKVRDLRKLIATSSANHLPIE--NLRLVF--RGKVLDDTQD 67 (137)
Q Consensus 31 ~TV~dLK~~Ia~~~~~~ip~e--~qRLi~--~Gk~L~D~~~ 67 (137)
.|..+|+.+... +++++.. ..+|++ .|..+.|++-
T Consensus 37 ~SL~EL~~K~~~--~l~l~~~~~~~~lvLeeDGT~VddEeY 75 (100)
T 1f2r_I 37 SSLEELRSKACE--LLAIDKSLTPITLVLAEDGTIVDDDDY 75 (100)
T ss_dssp SSHHHHHHHHHH--HHCCCGGGCSCEEEESSSCCBCCSSSS
T ss_pred CCHHHHHHHHHH--HhccCCCCCceEEEEeeCCcEEechhH
Confidence 489999999988 8888753 356653 5888876554
No 197
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=24.93 E-value=1.7e+02 Score=20.97 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=34.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCC-CCC---------CCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032588 24 RLSVSSPIKVRDLRKLIATSSAN-HLP---------IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (137)
Q Consensus 24 ~l~v~~~~TV~dLK~~Ia~~~~~-~ip---------~e~qRLi~~Gk~L~D~~~~d~~~L~~~~I~dg~tLlv 86 (137)
.++++. .||.+|.+.+.. .. ++. .....+..+|....... -.+.-|++||.|.+
T Consensus 17 ~~ev~~-~TV~dLl~~L~~--~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~------~~dt~L~dGDeVai 80 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVR--AYPALKEELFEGEGLAERVSVFLEGRDVRYLQ------GLSTPLSPGATLDL 80 (168)
T ss_dssp EEECCC-SBHHHHHHHHHH--HCGGGHHHHEETTEECTTCEEEETTEEGGGTT------GGGCBCCTTCEEEE
T ss_pred eEEECC-CcHHHHHHHHHh--hChhhhhhhhcccccCCcEEEEECCEECCCcC------CCccCCCCCCEEEE
Confidence 456665 899999999876 32 111 13345667787765321 23457999999933
No 198
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=23.63 E-value=73 Score=21.09 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=30.4
Q ss_pred CCceEEEEEeCCCCCcE---EEEecCCCcHHHHHHHHHhccCCCCC
Q 032588 7 SESVEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSANHLP 49 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~---~l~v~~~~TV~dLK~~Ia~~~~~~ip 49 (137)
...|.|.++..+.-..+ ..-|+.+.|+++|-..|.. ..++.
T Consensus 11 ~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRk--rL~l~ 54 (96)
T 1wz3_A 11 VQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRR--QLHSD 54 (96)
T ss_dssp -CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHH--HHTCS
T ss_pred CCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHH--hcCCc
Confidence 35799999988653322 3789999999999999987 65555
No 199
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=23.10 E-value=48 Score=23.85 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=25.6
Q ss_pred CCCCCCceEEEEEeCCCCCcEEEEecCCC---cHHHHHHHH
Q 032588 3 MGEISESVEITVKTIGPAPPSRLSVSSPI---KVRDLRKLI 40 (137)
Q Consensus 3 ~~~~~~~m~I~VKt~~~~~~~~l~v~~~~---TV~dLK~~I 40 (137)
|+++...|+|.|... + ..+..++..+. |+++|.+++
T Consensus 23 ~~~~~~~~~I~i~~~-~-~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 23 MGERGVEMRLRIRFE-S-AECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCCCSSCCCEEEEET-T-EEEEECCCTTSCHHHHHHHHHTC
T ss_pred cccccCCeEEEEEEC-C-EEEEEEEcCCCCHHHHHHHHHhC
Confidence 455556688888763 3 33777888888 999888755
No 200
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=20.83 E-value=1.5e+02 Score=18.83 Aligned_cols=29 Identities=10% Similarity=0.018 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHH
Q 032588 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLR 37 (137)
Q Consensus 8 ~~m~I~VKt~~~~~~~~l~v~~~~TV~dLK 37 (137)
.+++|++...++.. ..+.+++..|+.+.=
T Consensus 2 ~~~~v~~~~~~g~~-~~~~~~~g~tlL~a~ 30 (103)
T 2wlb_A 2 TGIKVFFVTPEGRE-IMIEGNEGDSILDLA 30 (103)
T ss_dssp CCEEEEEECTTCCE-EEEEECTTCBHHHHH
T ss_pred CceEEEEEeCCCCE-EEEEECCCCHHHHHH
Confidence 35788888666644 678999999998763
No 201
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=20.81 E-value=1.5e+02 Score=19.42 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=28.7
Q ss_pred CCceEEEEEeCCCCCcEE---EEecCCCcHHHHHHHHHhccCCCC
Q 032588 7 SESVEITVKTIGPAPPSR---LSVSSPIKVRDLRKLIATSSANHL 48 (137)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~---l~v~~~~TV~dLK~~Ia~~~~~~i 48 (137)
.+.|.|.+|..++-..+. .-|+.+.|++++-..|.. ..++
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRk--rL~l 48 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKR--RLKM 48 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHH--HHTC
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHH--hhCC
Confidence 456888888877654332 679999999999998887 5555
No 202
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=20.21 E-value=1.4e+02 Score=21.52 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=30.5
Q ss_pred ceEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 032588 9 SVEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (137)
Q Consensus 9 ~m~I~VKt~~~~~~--~~l~v~~~~TV~dLK~~Ia~~~~~~ip~e~ 52 (137)
..+|+|...+.+.+ ..|.|+.+.|+.+|=..|.. ..|..-..
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~--afgw~~~H 51 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQA--VMDWEDYH 51 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHH--HTTCCCCS
T ss_pred EEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHH--HhCCCCCE
Confidence 35566655543333 45999999999999999988 88866554
Done!