BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032589
         (137 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5ZLL1|KC1E_CHICK Casein kinase I isoform epsilon OS=Gallus gallus GN=CSNK1E PE=2
           SV=2
          Length = 416

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 8   VGEISQPPPQPQPPPPPARASSGGRLRNRADPL 40
           +G++     +  PP PPA A+ G RLRN A+P+
Sbjct: 317 MGQLRGSATRALPPGPPAGAT-GNRLRNVAEPM 348


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,290,166
Number of Sequences: 539616
Number of extensions: 1937681
Number of successful extensions: 38199
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 31295
Number of HSP's gapped (non-prelim): 5344
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)