Query 032589
Match_columns 137
No_of_seqs 27 out of 29
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 04:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032589.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032589hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j8ca_ d.15.1.1 (A:) Ubiquiti 21.2 54 0.004 20.2 3.9 10 1-10 1-10 (103)
2 d1eucb1 c.23.4.1 (B:246-393) S 16.4 32 0.0024 24.0 2.0 23 75-97 79-101 (148)
3 d1wrua2 b.106.1.1 (A:3-176) Ba 13.4 34 0.0025 21.9 1.3 15 95-109 144-158 (174)
4 d3d37a1 b.106.1.1 (A:6-178) Ba 13.4 34 0.0025 22.4 1.3 14 95-108 143-156 (173)
5 d2nu7b1 c.23.4.1 (B:239-388) S 12.7 47 0.0034 23.1 2.0 23 75-97 79-101 (150)
6 d1s12a_ d.64.2.1 (A:) Hypothet 8.9 65 0.0048 20.6 1.5 31 51-83 24-54 (94)
7 d2itba1 a.25.1.7 (A:3-201) Put 8.2 3.2E+02 0.023 19.5 5.4 45 59-117 39-83 (199)
8 d2gy9p1 d.27.1.1 (P:1-78) Ribo 7.9 51 0.0037 20.7 0.6 8 109-116 57-64 (78)
9 d3cdda2 b.106.1.1 (A:2-180) Ba 7.4 75 0.0055 20.3 1.3 14 95-108 149-162 (179)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 6.2 1.1E+02 0.0081 17.3 1.4 10 116-125 20-29 (37)
No 1
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.23 E-value=54 Score=20.23 Aligned_cols=10 Identities=60% Similarity=0.866 Sum_probs=6.6
Q ss_pred CCCCccccCC
Q 032589 1 MARNGERVGE 10 (137)
Q Consensus 1 Mar~~~~~~~ 10 (137)
|+.+++....
T Consensus 1 m~~~~~ss~p 10 (103)
T d1j8ca_ 1 MAENGESSGP 10 (103)
T ss_dssp CCCSCCCCCC
T ss_pred CCccCccCCC
Confidence 7777776543
No 2
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=16.42 E-value=32 Score=23.99 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=18.8
Q ss_pred cccchhhhHHHHHHHHHHHHHhh
Q 032589 75 DIFDGIFRCYAVVIAFFVALAET 97 (137)
Q Consensus 75 dif~GI~RcYaV~iA~fVvlaET 97 (137)
.||.||.||--|+-++.=++-|.
T Consensus 79 NIfGGI~rcD~vA~GIv~A~~e~ 101 (148)
T d1eucb1 79 NIFGGIVNCAIIANGITKACREL 101 (148)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHH
T ss_pred EeeEeehhHHHHHHHHHHHHHhc
Confidence 69999999999988777666654
No 3
>d1wrua2 b.106.1.1 (A:3-176) Baseplate protein gpP {Bacteriophage mu [TaxId: 10677]}
Probab=13.43 E-value=34 Score=21.92 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=12.6
Q ss_pred HhhhHHHHHHHHHHH
Q 032589 95 AETEWQFVLKFTKVL 109 (137)
Q Consensus 95 aETEW~~i~kF~kvL 109 (137)
-||.|+||.++++-.
T Consensus 144 ~ESd~~fl~RLa~~~ 158 (174)
T d1wrua2 144 SETVYEALVRASRAR 158 (174)
T ss_dssp TCBHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHC
Confidence 499999999988754
No 4
>d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria meningitidis [TaxId: 487]}
Probab=13.43 E-value=34 Score=22.37 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.8
Q ss_pred HhhhHHHHHHHHHH
Q 032589 95 AETEWQFVLKFTKV 108 (137)
Q Consensus 95 aETEW~~i~kF~kv 108 (137)
-||.|+|+.+.++-
T Consensus 143 ~ETd~~fl~Rla~~ 156 (173)
T d3d37a1 143 GETVWQALTHIANS 156 (173)
T ss_dssp TCBHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 39999999998764
No 5
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.68 E-value=47 Score=23.07 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=18.1
Q ss_pred cccchhhhHHHHHHHHHHHHHhh
Q 032589 75 DIFDGIFRCYAVVIAFFVALAET 97 (137)
Q Consensus 75 dif~GI~RcYaV~iA~fVvlaET 97 (137)
.||.||.||--|+=++.=++=|.
T Consensus 79 NifGGI~rcd~vA~GIv~A~k~~ 101 (150)
T d2nu7b1 79 NIFGGIVRCDLIADGIIGAVAEV 101 (150)
T ss_dssp EEESCSSCHHHHHHHHHHHHHHH
T ss_pred EEeeeeehhHHHHHHHHHHHHhc
Confidence 79999999999887776555554
No 6
>d1s12a_ d.64.2.1 (A:) Hypothetical protein TM1457 {Thermotoga maritima [TaxId: 2336]}
Probab=8.87 E-value=65 Score=20.58 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcccccchhhhH
Q 032589 51 TSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRC 83 (137)
Q Consensus 51 Ta~~AlLCi~vNvlSavrsf~~~~dif~GI~Rc 83 (137)
.++++|...++|.|....+.+ .++=+|.++|
T Consensus 24 AaVS~l~~~~vN~l~~~~~~~--~~~~~G~l~~ 54 (94)
T d1s12a_ 24 ASVSLLTQHVANFLKAEKKAK--IKKESGYLKV 54 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTSEE--EEEETTEEEE
T ss_pred hhhHHHHHHHHHHHHHHhCCc--EEeeCCEEEE
Confidence 567778888899887655443 2444675443
No 7
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}
Probab=8.20 E-value=3.2e+02 Score=19.54 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhccCcccccchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 032589 59 LAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGM 117 (137)
Q Consensus 59 i~vNvlSavrsf~~~~dif~GI~RcYaV~iA~fVvlaETEW~~i~kF~kvLeyW~gRGm 117 (137)
.+-|.||.+.+|-+..+ ++.-..-+|.-||+.|-+-.+++ -.||+
T Consensus 39 AA~~Alsli~rYp~~~~-----------Lv~~m~~La~EEL~HF~qV~~im---~~Rgi 83 (199)
T d2itba1 39 AASTALSLIAKYNTHLD-----------LINMMSRLAREELVHHEQVLRLM---KRRGV 83 (199)
T ss_dssp HHHHHHHHHHHTTTCHH-----------HHHHHHHHHHHHHHHHHHHHHHH---HHTTC
T ss_pred HHHHHHHHHHHCCChHH-----------HHHHHHHHHHHHHHHHHHHHHHH---HHcCC
Confidence 46788999999966554 56667788999998665555444 45664
No 8
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Probab=7.89 E-value=51 Score=20.69 Aligned_cols=8 Identities=38% Similarity=1.115 Sum_probs=5.2
Q ss_pred HHHHHhhh
Q 032589 109 LEYWVARG 116 (137)
Q Consensus 109 LeyW~gRG 116 (137)
++||++.|
T Consensus 57 i~~Wl~~G 64 (78)
T d2gy9p1 57 IAHWVGQG 64 (78)
T ss_dssp HHHHTTTT
T ss_pred HHHHHHCc
Confidence 46777666
No 9
>d3cdda2 b.106.1.1 (A:2-180) Baseplate protein gpP {Shewanella oneidensis [TaxId: 70863]}
Probab=7.40 E-value=75 Score=20.31 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=11.5
Q ss_pred HhhhHHHHHHHHHH
Q 032589 95 AETEWQFVLKFTKV 108 (137)
Q Consensus 95 aETEW~~i~kF~kv 108 (137)
-||.|+|+.++.+-
T Consensus 149 ~Esd~~fl~Rla~~ 162 (179)
T d3cdda2 149 GETPHELLARLAKQ 162 (179)
T ss_dssp TCCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHH
Confidence 49999999988763
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.20 E-value=1.1e+02 Score=17.28 Aligned_cols=10 Identities=40% Similarity=0.551 Sum_probs=7.2
Q ss_pred hhHHHHHHHH
Q 032589 116 GMLQILEFYA 125 (137)
Q Consensus 116 GmLQIFvA~m 125 (137)
|+|-|||-..
T Consensus 20 GlLlifvl~v 29 (37)
T d2axtl1 20 GLLLILVLAL 29 (37)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888887543
Done!