Query 032590
Match_columns 137
No_of_seqs 134 out of 937
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 7E-43 1.5E-47 259.1 9.1 135 1-137 83-217 (217)
2 KOG0860 Synaptobrevin/VAMP-lik 100.0 1.6E-30 3.5E-35 179.0 12.8 87 44-130 28-114 (116)
3 PF00957 Synaptobrevin: Synapt 100.0 2.9E-30 6.3E-35 172.3 12.9 87 45-131 3-89 (89)
4 KOG0861 SNARE protein YKT6, sy 99.8 1.2E-18 2.5E-23 127.8 8.0 96 2-101 98-193 (198)
5 KOG0862 Synaptobrevin/VAMP-lik 99.8 1.2E-17 2.7E-22 126.2 13.1 110 1-112 91-201 (216)
6 COG5143 SNC1 Synaptobrevin/VAM 99.5 2.5E-14 5.4E-19 106.8 8.3 98 4-106 92-190 (190)
7 COG5143 SNC1 Synaptobrevin/VAM 98.1 2.1E-05 4.5E-10 59.1 7.8 81 46-126 95-175 (190)
8 PF00957 Synaptobrevin: Synapt 97.3 0.012 2.6E-07 38.7 11.2 77 45-125 10-86 (89)
9 PF03908 Sec20: Sec20; InterP 97.0 0.051 1.1E-06 36.1 12.4 81 46-126 9-89 (92)
10 KOG0811 SNARE protein PEP12/VA 96.7 0.033 7.2E-07 44.2 10.8 45 44-88 179-223 (269)
11 KOG0810 SNARE protein Syntaxin 95.7 0.19 4.2E-06 40.5 10.4 73 45-119 206-281 (297)
12 PF09753 Use1: Membrane fusion 95.5 0.63 1.4E-05 36.2 12.6 46 76-122 195-242 (251)
13 PF03908 Sec20: Sec20; InterP 94.1 1 2.3E-05 29.7 11.9 75 48-125 4-84 (92)
14 COG5074 t-SNARE complex subuni 93.7 1.7 3.6E-05 34.1 10.7 72 49-120 189-263 (280)
15 PF13774 Longin: Regulated-SNA 93.0 0.058 1.3E-06 34.7 1.6 27 1-28 56-82 (83)
16 KOG0860 Synaptobrevin/VAMP-lik 92.6 2.5 5.4E-05 29.5 11.2 38 66-103 57-94 (116)
17 KOG1983 Tomosyn and related SN 91.3 0.19 4.2E-06 46.5 3.3 48 60-107 942-989 (993)
18 COG5074 t-SNARE complex subuni 90.7 4.3 9.3E-05 31.9 9.6 82 44-129 187-275 (280)
19 PF10779 XhlA: Haemolysin XhlA 87.6 5.1 0.00011 25.1 10.1 51 72-125 19-69 (71)
20 PRK09400 secE preprotein trans 87.4 4.9 0.00011 24.8 6.5 51 76-126 4-54 (61)
21 PF04799 Fzo_mitofusin: fzo-li 87.3 7.7 0.00017 28.9 8.6 51 45-95 109-159 (171)
22 COG5325 t-SNARE complex subuni 87.2 13 0.00027 29.8 10.2 63 45-107 195-261 (283)
23 PTZ00478 Sec superfamily; Prov 86.7 4.7 0.0001 26.4 6.4 56 69-124 10-65 (81)
24 cd07912 Tweety_N N-terminal do 86.4 19 0.00042 30.4 11.9 41 23-66 104-144 (418)
25 KOG3385 V-SNARE [Intracellular 85.4 6.1 0.00013 27.6 6.8 74 44-122 35-112 (118)
26 PRK10884 SH3 domain-containing 84.9 15 0.00033 28.0 12.6 25 71-95 130-154 (206)
27 KOG3202 SNARE protein TLG1/Syn 82.3 22 0.00047 27.8 10.6 25 47-71 139-163 (235)
28 PF03904 DUF334: Domain of unk 80.2 26 0.00056 27.3 12.5 11 47-57 99-109 (230)
29 KOG0809 SNARE protein TLG2/Syn 80.0 9.5 0.00021 30.8 6.9 36 45-80 218-253 (305)
30 PF12606 RELT: Tumour necrosis 78.6 1.6 3.5E-05 25.9 1.7 14 123-136 14-32 (50)
31 PF13800 Sigma_reg_N: Sigma fa 77.4 6.1 0.00013 26.1 4.5 13 96-108 5-17 (96)
32 PF09753 Use1: Membrane fusion 77.1 32 0.00069 26.7 10.1 45 77-124 203-247 (251)
33 PRK01026 tetrahydromethanopter 77.1 17 0.00037 23.5 7.1 28 73-102 22-49 (77)
34 PF06072 Herpes_US9: Alphaherp 76.8 10 0.00022 23.4 4.8 12 84-95 6-17 (60)
35 KOG0810 SNARE protein Syntaxin 76.6 39 0.00084 27.3 9.6 22 106-127 265-286 (297)
36 KOG1666 V-SNARE [Intracellular 75.8 35 0.00075 26.4 12.1 20 76-95 163-182 (220)
37 PF04906 Tweety: Tweety; Inte 75.5 47 0.001 27.8 11.5 15 47-61 105-119 (406)
38 TIGR01149 mtrG N5-methyltetrah 75.0 18 0.0004 22.9 7.3 28 73-102 19-46 (70)
39 PRK10884 SH3 domain-containing 74.3 36 0.00078 25.9 12.1 16 76-91 142-157 (206)
40 PF06789 UPF0258: Uncharacteri 72.9 1.4 3E-05 32.2 0.4 34 94-130 122-155 (159)
41 PF05478 Prominin: Prominin; 72.8 73 0.0016 29.1 11.4 16 116-131 426-441 (806)
42 TIGR00327 secE_euk_arch protei 71.7 21 0.00045 22.0 5.6 44 83-126 7-50 (61)
43 PF11337 DUF3139: Protein of u 70.6 5.4 0.00012 25.9 2.8 7 109-115 5-11 (85)
44 PF07204 Orthoreo_P10: Orthore 70.3 3.3 7.1E-05 27.9 1.7 23 108-130 41-63 (98)
45 PF13800 Sigma_reg_N: Sigma fa 69.6 12 0.00027 24.5 4.5 19 99-117 5-23 (96)
46 COG5415 Predicted integral mem 69.5 43 0.00094 26.0 7.8 22 72-93 14-35 (251)
47 PF05568 ASFV_J13L: African sw 69.4 10 0.00022 27.8 4.2 24 108-131 30-53 (189)
48 PF01099 Uteroglobin: Uteroglo 68.0 12 0.00026 23.1 3.9 43 29-71 18-60 (67)
49 KOG1326 Membrane-associated pr 66.7 9.5 0.00021 35.6 4.4 40 88-127 1050-1089(1105)
50 KOG2678 Predicted membrane pro 65.9 42 0.00092 26.2 7.2 7 96-102 203-209 (244)
51 PF05739 SNARE: SNARE domain; 65.5 26 0.00056 20.7 9.5 44 45-88 4-47 (63)
52 PF04210 MtrG: Tetrahydrometha 65.3 32 0.0007 21.8 7.8 29 72-102 18-46 (70)
53 KOG0812 SNARE protein SED5/Syn 65.2 73 0.0016 25.8 11.5 40 44-83 226-265 (311)
54 KOG3894 SNARE protein Syntaxin 63.6 81 0.0018 25.8 10.7 65 25-92 215-283 (316)
55 smart00096 UTG Uteroglobin. 62.1 27 0.00058 22.1 4.6 41 31-71 22-62 (69)
56 COG5278 Predicted periplasmic 61.9 70 0.0015 24.5 12.6 42 24-65 87-128 (207)
57 KOG0859 Synaptobrevin/VAMP-lik 61.3 30 0.00064 26.6 5.5 53 52-104 125-177 (217)
58 PF01601 Corona_S2: Coronaviru 61.0 2.6 5.6E-05 37.1 -0.2 14 24-37 480-493 (610)
59 KOG0811 SNARE protein PEP12/VA 60.3 48 0.001 26.4 6.9 19 88-106 220-238 (269)
60 PF04888 SseC: Secretion syste 60.1 85 0.0018 24.8 9.3 34 55-88 22-55 (306)
61 PF10717 ODV-E18: Occlusion-de 59.1 15 0.00033 24.1 3.2 6 111-116 29-34 (85)
62 KOG3498 Preprotein translocase 59.1 42 0.00091 21.0 5.7 38 75-112 4-41 (67)
63 COG5547 Small integral membran 58.5 15 0.00032 22.6 2.8 18 104-121 3-20 (62)
64 PF03302 VSP: Giardia variant- 58.1 6.5 0.00014 32.8 1.7 14 119-132 382-395 (397)
65 PF10031 DUF2273: Small integr 57.3 18 0.00039 21.4 3.1 16 103-118 2-17 (51)
66 PF12352 V-SNARE_C: Snare regi 57.1 41 0.00088 20.2 8.5 56 45-100 8-63 (66)
67 cd00633 Secretoglobin Secretog 56.5 35 0.00076 20.9 4.5 42 29-70 18-59 (67)
68 PF13124 DUF3963: Protein of u 56.3 28 0.00061 19.3 3.5 17 102-118 17-33 (40)
69 PF14575 EphA2_TM: Ephrin type 56.2 17 0.00036 23.2 3.1 18 114-131 7-24 (75)
70 PF12420 DUF3671: Protein of u 55.5 59 0.0013 22.0 5.8 35 77-119 22-56 (104)
71 PHA02911 C-type lectin-like pr 55.3 33 0.00071 26.4 4.9 25 70-94 2-26 (213)
72 PRK10600 nitrate/nitrite senso 55.1 1.3E+02 0.0029 25.6 10.4 21 51-71 67-87 (569)
73 PF00482 T2SF: Type II secreti 53.6 25 0.00054 22.7 3.8 12 83-94 78-89 (124)
74 PHA02650 hypothetical protein; 52.9 24 0.00052 23.0 3.3 7 55-61 25-31 (81)
75 PF06837 Fijivirus_P9-2: Fijiv 52.8 35 0.00076 25.9 4.7 36 53-88 24-61 (214)
76 KOG4331 Polytopic membrane pro 52.5 1.2E+02 0.0025 28.2 8.6 14 50-63 370-383 (865)
77 PF12751 Vac7: Vacuolar segreg 52.0 17 0.00038 30.4 3.3 26 100-125 294-319 (387)
78 PF06008 Laminin_I: Laminin Do 51.4 1E+02 0.0022 23.9 7.4 53 47-99 54-106 (264)
79 smart00397 t_SNARE Helical reg 51.2 47 0.001 19.2 7.6 44 45-88 12-55 (66)
80 PF08999 SP_C-Propep: Surfacta 51.2 31 0.00067 22.7 3.7 27 107-133 32-58 (93)
81 KOG2678 Predicted membrane pro 51.0 1.2E+02 0.0026 23.8 8.1 22 77-98 191-212 (244)
82 PF14914 LRRC37AB_C: LRRC37A/B 50.2 16 0.00034 26.7 2.4 19 112-130 121-139 (154)
83 PF00558 Vpu: Vpu protein; In 49.8 25 0.00054 23.0 3.1 21 110-130 6-26 (81)
84 PF03670 UPF0184: Uncharacteri 49.7 72 0.0016 20.9 6.3 30 74-103 41-70 (83)
85 KOG3220 Similar to bacterial d 49.2 1.2E+02 0.0027 23.5 7.7 58 25-86 135-192 (225)
86 PF07798 DUF1640: Protein of u 48.2 1.1E+02 0.0023 22.4 14.0 26 45-70 80-105 (177)
87 PF10504 DUF2452: Protein of u 48.1 1.1E+02 0.0024 22.5 7.0 47 45-97 30-76 (159)
88 cd00193 t_SNARE Soluble NSF (N 47.9 52 0.0011 18.7 7.6 44 45-88 6-49 (60)
89 PF06695 Sm_multidrug_ex: Puta 47.3 93 0.002 21.5 6.1 25 90-116 56-80 (121)
90 PF14712 Snapin_Pallidin: Snap 47.1 75 0.0016 20.4 8.5 79 21-100 7-91 (92)
91 PF12575 DUF3753: Protein of u 46.9 33 0.00071 21.9 3.2 10 54-63 24-33 (72)
92 PHA03386 P10 fibrous body prot 46.8 62 0.0014 21.7 4.7 17 44-60 18-34 (94)
93 COG2976 Uncharacterized protei 46.4 21 0.00045 27.4 2.7 25 102-126 15-39 (207)
94 PF00429 TLV_coat: ENV polypro 45.7 74 0.0016 27.9 6.3 24 44-67 441-464 (561)
95 COG4064 MtrG Tetrahydromethano 45.5 79 0.0017 20.1 6.8 28 73-102 22-49 (75)
96 PF04799 Fzo_mitofusin: fzo-li 44.9 1.3E+02 0.0028 22.4 7.8 49 46-94 117-165 (171)
97 KOG3230 Vacuolar assembly/sort 44.7 88 0.0019 24.0 5.8 28 52-79 133-160 (224)
98 PF05659 RPW8: Arabidopsis bro 44.2 67 0.0014 23.1 5.0 48 25-73 31-79 (147)
99 PF06825 HSBP1: Heat shock fac 44.2 53 0.0012 19.7 3.7 41 46-89 11-51 (54)
100 COG4499 Predicted membrane pro 43.9 35 0.00076 28.8 3.8 41 85-127 198-238 (434)
101 PF13980 UPF0370: Uncharacteri 43.6 48 0.001 20.4 3.4 13 104-116 3-15 (63)
102 PF07352 Phage_Mu_Gam: Bacteri 43.5 1.2E+02 0.0025 21.6 7.3 51 44-94 9-60 (149)
103 COG3074 Uncharacterized protei 43.2 87 0.0019 20.0 8.3 57 43-99 16-72 (79)
104 TIGR01006 polys_exp_MPA1 polys 42.9 48 0.001 24.9 4.3 17 103-119 16-32 (226)
105 PF07296 TraP: TraP protein; 42.7 1.5E+02 0.0033 22.6 6.7 44 82-126 6-49 (202)
106 TIGR01478 STEVOR variant surfa 42.6 34 0.00074 27.6 3.5 20 20-39 50-69 (295)
107 KOG3065 SNAP-25 (synaptosome-a 42.5 1.5E+02 0.0032 23.7 7.1 53 45-97 218-270 (273)
108 TIGR01478 STEVOR variant surfa 42.2 22 0.00047 28.7 2.3 7 103-109 163-169 (295)
109 PTZ00370 STEVOR; Provisional 42.1 29 0.00063 28.0 3.0 16 24-39 53-68 (296)
110 PF08900 DUF1845: Domain of un 41.7 1E+02 0.0022 23.6 5.9 50 18-68 35-85 (217)
111 PF08006 DUF1700: Protein of u 41.6 1.4E+02 0.0029 21.7 8.3 7 3-9 4-10 (181)
112 PHA02844 putative transmembran 41.2 47 0.001 21.3 3.3 8 55-62 25-32 (75)
113 PRK13664 hypothetical protein; 40.9 60 0.0013 19.9 3.6 12 104-115 3-14 (62)
114 PHA03054 IMV membrane protein; 40.7 47 0.001 21.1 3.2 8 55-62 25-32 (72)
115 PF11657 Activator-TraM: Trans 40.7 1.4E+02 0.003 21.6 13.2 13 25-37 50-62 (144)
116 COG1422 Predicted membrane pro 40.4 1.7E+02 0.0036 22.4 12.1 48 45-94 72-119 (201)
117 PF11026 DUF2721: Protein of u 39.6 1.3E+02 0.0028 20.9 8.4 18 94-111 50-67 (130)
118 KOG4111 Translocase of outer m 39.4 1.1E+02 0.0023 22.0 5.2 45 82-126 56-101 (136)
119 PLN03223 Polycystin cation cha 38.9 96 0.0021 30.6 6.2 44 44-87 1580-1623(1634)
120 PF13908 Shisa: Wnt and FGF in 38.9 15 0.00032 27.0 0.9 17 114-130 81-97 (179)
121 PF10039 DUF2275: Predicted in 38.9 64 0.0014 24.9 4.4 25 96-120 22-46 (218)
122 PF02038 ATP1G1_PLM_MAT8: ATP1 38.7 85 0.0018 18.6 3.9 10 105-114 11-20 (50)
123 TIGR03044 PS_II_psb27 photosys 38.4 1.3E+02 0.0028 21.6 5.5 55 3-59 73-130 (135)
124 PF00081 Sod_Fe_N: Iron/mangan 38.3 1.1E+02 0.0023 19.6 6.0 74 17-108 6-81 (82)
125 PRK15348 type III secretion sy 38.2 75 0.0016 25.0 4.7 27 96-122 209-235 (249)
126 PRK14125 cell division suppres 38.0 55 0.0012 22.1 3.5 16 102-117 2-17 (103)
127 PTZ00370 STEVOR; Provisional 37.9 27 0.00059 28.2 2.3 7 103-109 163-169 (296)
128 KOG1690 emp24/gp25L/p24 family 37.8 1.9E+02 0.0041 22.3 6.9 23 84-106 164-187 (215)
129 PF07172 GRP: Glycine rich pro 37.8 40 0.00088 22.5 2.8 17 109-125 4-20 (95)
130 PF15339 Afaf: Acrosome format 37.5 65 0.0014 24.2 4.0 25 107-131 127-152 (200)
131 COG4327 Predicted membrane pro 37.2 90 0.0019 21.1 4.3 31 95-125 5-35 (101)
132 COG3524 KpsE Capsule polysacch 36.9 64 0.0014 26.6 4.2 17 45-61 230-246 (372)
133 KOG1693 emp24/gp25L/p24 family 36.6 1.7E+02 0.0037 22.5 6.2 14 100-113 173-186 (209)
134 PF15102 TMEM154: TMEM154 prot 36.4 9.7 0.00021 27.6 -0.4 9 125-133 72-80 (146)
135 PF13228 DUF4037: Domain of un 36.3 1.3E+02 0.0028 20.0 7.0 48 39-87 34-81 (100)
136 PF06422 PDR_CDR: CDR ABC tran 35.5 55 0.0012 21.9 3.2 20 98-117 42-61 (103)
137 PRK11901 hypothetical protein; 35.3 43 0.00092 27.5 3.0 14 111-124 39-52 (327)
138 PRK15041 methyl-accepting chem 35.2 2.9E+02 0.0064 23.8 14.0 14 47-60 122-135 (554)
139 COG1340 Uncharacterized archae 35.2 2.4E+02 0.0053 22.8 7.8 50 46-102 180-229 (294)
140 KOG3658 Tumor necrosis factor- 35.2 51 0.0011 29.8 3.7 28 104-131 678-705 (764)
141 PF06143 Baculo_11_kDa: Baculo 34.9 1E+02 0.0022 20.2 4.3 12 101-112 29-40 (84)
142 KOG3251 Golgi SNAP receptor co 34.8 2.1E+02 0.0046 22.0 10.6 32 63-94 136-168 (213)
143 TIGR03545 conserved hypothetic 34.3 3.1E+02 0.0067 24.2 8.3 52 44-95 190-241 (555)
144 PF04531 Phage_holin_1: Bacter 34.2 32 0.0007 22.3 1.8 24 99-122 2-25 (84)
145 COG1969 HyaC Ni,Fe-hydrogenase 33.9 45 0.00097 25.7 2.8 37 97-133 96-150 (227)
146 PF04510 DUF577: Family of unk 32.4 1.9E+02 0.0041 21.6 5.8 46 52-107 126-171 (174)
147 PRK10381 LPS O-antigen length 32.3 78 0.0017 26.3 4.2 17 102-118 34-50 (377)
148 COG1723 Uncharacterized conser 32.2 1.1E+02 0.0023 25.2 4.8 65 64-132 264-330 (331)
149 PHA02673 ORF109 EEV glycoprote 32.2 1.6E+02 0.0036 21.6 5.4 11 99-109 23-33 (161)
150 PHA02975 hypothetical protein; 31.6 79 0.0017 20.0 3.2 7 55-61 25-31 (69)
151 PF05399 EVI2A: Ectropic viral 31.5 38 0.00083 26.2 2.1 9 90-98 114-122 (227)
152 PF13040 DUF3901: Protein of u 31.1 1E+02 0.0023 17.3 3.5 27 58-84 9-35 (40)
153 PTZ00382 Variant-specific surf 31.0 25 0.00054 23.5 0.9 11 121-131 83-93 (96)
154 PRK15041 methyl-accepting chem 30.9 1.8E+02 0.0039 25.0 6.4 55 46-100 469-523 (554)
155 PF13937 DUF4212: Domain of un 30.7 1.5E+02 0.0033 19.2 4.8 18 100-117 3-20 (81)
156 PRK10617 cytochrome c-type pro 30.7 1.1E+02 0.0024 23.3 4.4 6 105-110 19-24 (200)
157 PF10661 EssA: WXG100 protein 30.6 72 0.0016 23.0 3.3 8 54-61 66-73 (145)
158 KOG0862 Synaptobrevin/VAMP-lik 30.4 2.6E+02 0.0056 21.7 9.6 67 45-113 118-195 (216)
159 PHA02947 S-S bond formation pa 29.9 49 0.0011 25.5 2.4 19 24-42 61-79 (215)
160 PF13706 PepSY_TM_3: PepSY-ass 29.4 1E+02 0.0022 16.6 3.3 6 108-113 8-13 (37)
161 PRK09793 methyl-accepting prot 29.2 2.9E+02 0.0064 23.6 7.4 43 50-92 469-511 (533)
162 PRK09697 protein secretion pro 29.1 49 0.0011 23.1 2.1 26 103-130 19-44 (139)
163 PF14004 DUF4227: Protein of u 28.9 1.2E+02 0.0026 19.3 3.7 24 103-126 2-25 (71)
164 PF05781 MRVI1: MRVI1 protein; 28.9 2.5E+02 0.0053 24.8 6.7 8 27-34 399-406 (538)
165 KOG3385 V-SNARE [Intracellular 28.5 79 0.0017 22.1 3.0 78 50-127 30-114 (118)
166 PRK12430 putative bifunctional 28.0 1.2E+02 0.0025 25.5 4.4 40 74-113 102-141 (379)
167 PRK10299 PhoPQ regulatory prot 27.6 44 0.00096 19.5 1.4 24 107-130 3-28 (47)
168 PF03030 H_PPase: Inorganic H+ 27.5 3.3E+02 0.0071 24.8 7.4 38 76-124 23-60 (682)
169 PF10875 DUF2670: Protein of u 27.4 89 0.0019 22.1 3.2 25 104-128 19-43 (139)
170 PRK15471 chain length determin 27.2 1.1E+02 0.0024 24.9 4.2 15 102-116 25-39 (325)
171 KOG2662 Magnesium transporters 27.2 3.9E+02 0.0085 22.7 8.5 33 30-62 302-335 (414)
172 KOG1666 V-SNARE [Intracellular 27.2 3E+02 0.0065 21.4 11.8 44 77-124 171-214 (220)
173 PF13172 PepSY_TM_1: PepSY-ass 26.9 1.1E+02 0.0023 16.1 3.9 9 103-111 4-12 (34)
174 PF11911 DUF3429: Protein of u 26.7 86 0.0019 22.2 3.1 25 102-126 118-142 (142)
175 PTZ00046 rifin; Provisional 26.6 2.5E+02 0.0053 23.5 6.1 51 20-72 47-101 (358)
176 PF00664 ABC_membrane: ABC tra 26.5 2.4E+02 0.0053 20.1 12.0 13 86-98 207-219 (275)
177 PF00306 ATP-synt_ab_C: ATP sy 26.5 1.1E+02 0.0025 20.4 3.6 40 62-101 4-45 (113)
178 KOG4782 Predicted membrane pro 26.1 2.1E+02 0.0046 19.3 5.6 15 104-118 53-67 (108)
179 PF13326 PSII_Pbs27: Photosyst 26.1 1.4E+02 0.003 21.5 4.1 55 3-59 85-143 (145)
180 PF13163 DUF3999: Protein of u 26.0 62 0.0013 27.3 2.6 22 105-126 406-427 (429)
181 PF05659 RPW8: Arabidopsis bro 26.0 2.5E+02 0.0054 20.1 8.2 22 89-110 78-99 (147)
182 PF10392 COG5: Golgi transport 25.7 2.3E+02 0.005 19.6 8.5 59 45-103 33-95 (132)
183 PHA03395 p10 fibrous body prot 25.6 1.7E+02 0.0036 19.4 4.1 16 44-59 17-32 (87)
184 PF05393 Hum_adeno_E3A: Human 25.5 61 0.0013 21.6 2.0 9 122-130 46-54 (94)
185 PLN00064 photosystem II protei 25.5 2.6E+02 0.0057 20.7 5.5 55 3-59 102-160 (166)
186 COG2443 Sss1 Preprotein transl 25.4 1.8E+02 0.0039 18.2 6.9 38 89-126 18-55 (65)
187 PRK13739 conjugal transfer pro 25.4 3E+02 0.0066 20.8 7.0 44 82-126 6-49 (198)
188 PF11166 DUF2951: Protein of u 25.4 2.2E+02 0.0048 19.2 10.9 17 51-67 34-50 (98)
189 PF10112 Halogen_Hydrol: 5-bro 25.2 1.7E+02 0.0036 21.7 4.6 24 45-68 156-179 (199)
190 PF06716 DUF1201: Protein of u 24.9 1.5E+02 0.0032 17.4 3.3 12 114-125 13-24 (54)
191 PRK12729 fliE flagellar hook-b 24.9 1.8E+02 0.0038 20.6 4.3 31 72-103 86-116 (127)
192 PF14979 TMEM52: Transmembrane 24.8 56 0.0012 23.8 1.9 12 122-133 33-44 (154)
193 KOG0979 Structural maintenance 24.7 5.5E+02 0.012 24.6 8.4 54 46-99 284-337 (1072)
194 PF06008 Laminin_I: Laminin Do 24.7 3.3E+02 0.0072 21.0 10.2 12 17-28 17-28 (264)
195 KOG3637 Vitronectin receptor, 24.7 82 0.0018 29.8 3.3 19 115-133 987-1005(1030)
196 PRK15048 methyl-accepting chem 24.6 4.2E+02 0.0091 22.6 7.5 52 42-93 463-514 (553)
197 PF02994 Transposase_22: L1 tr 24.4 2.2E+02 0.0049 23.5 5.6 38 45-82 151-188 (370)
198 PRK11638 lipopolysaccharide bi 24.4 1.2E+02 0.0026 24.9 3.9 17 102-118 17-33 (342)
199 PHA02692 hypothetical protein; 24.4 1.1E+02 0.0024 19.4 2.9 10 54-63 24-33 (70)
200 PF06103 DUF948: Bacterial pro 24.2 2E+02 0.0043 18.3 9.9 17 45-61 33-49 (90)
201 KOG4433 Tweety transmembrane/c 24.1 4.9E+02 0.011 22.8 11.2 25 46-70 128-152 (526)
202 PRK09662 GspL-like protein; Pr 23.9 64 0.0014 25.9 2.2 28 90-120 119-146 (286)
203 PF08372 PRT_C: Plant phosphor 23.8 2.9E+02 0.0064 20.1 6.5 12 96-107 82-93 (156)
204 PF01299 Lamp: Lysosome-associ 23.8 76 0.0017 25.3 2.7 7 111-117 274-280 (306)
205 PHA02902 putative IMV membrane 23.7 1.3E+02 0.0028 18.9 3.1 15 112-126 7-21 (70)
206 PF10372 YojJ: Bacterial membr 23.3 2.1E+02 0.0044 18.1 6.0 49 45-96 17-65 (70)
207 PF00523 Fusion_gly: Fusion gl 23.3 78 0.0017 27.4 2.7 15 45-60 432-446 (490)
208 KOG3003 Molecular chaperone of 23.1 3.7E+02 0.0081 21.1 7.3 50 45-95 71-120 (236)
209 PF13571 DUF4133: Domain of un 23.1 1.4E+02 0.003 20.1 3.4 23 108-131 18-40 (96)
210 COG3771 Predicted membrane pro 22.9 75 0.0016 21.2 2.0 15 119-133 49-63 (97)
211 KOG1602 Cis-prenyltransferase 22.7 1.2E+02 0.0025 24.3 3.4 33 44-76 91-123 (271)
212 PHA03011 hypothetical protein; 22.7 2.6E+02 0.0057 19.1 6.2 52 29-83 65-116 (120)
213 KOG4827 Uncharacterized conser 22.6 60 0.0013 25.0 1.7 20 101-120 238-257 (279)
214 PF00429 TLV_coat: ENV polypro 22.6 2.5E+02 0.0054 24.7 5.7 33 45-77 435-467 (561)
215 PF05454 DAG1: Dystroglycan (D 22.2 29 0.00064 27.9 0.0 29 46-74 68-96 (290)
216 KOG3287 Membrane trafficking p 22.2 3.9E+02 0.0084 20.9 8.2 54 61-114 151-209 (236)
217 COG5325 t-SNARE complex subuni 22.0 2.9E+02 0.0063 22.2 5.5 33 86-118 233-269 (283)
218 PF13721 SecD-TM1: SecD export 21.9 1.1E+02 0.0025 20.4 2.9 8 101-108 3-10 (101)
219 PF10779 XhlA: Haemolysin XhlA 21.7 2.1E+02 0.0045 17.6 9.7 19 83-101 37-55 (71)
220 PF13675 PilJ: Type IV pili me 21.7 1.8E+02 0.0039 18.9 3.8 12 24-35 53-64 (112)
221 PF03238 ESAG1: ESAG protein; 21.7 3.6E+02 0.0078 21.0 5.8 57 62-118 6-62 (231)
222 PF13044 DUF3904: Protein of u 21.7 1E+02 0.0022 24.8 2.9 23 98-120 402-424 (436)
223 KOG3990 Uncharacterized conser 21.7 4.1E+02 0.0089 21.3 6.2 38 44-81 224-261 (305)
224 PF12325 TMF_TATA_bd: TATA ele 21.6 2.9E+02 0.0063 19.2 7.6 8 25-32 20-27 (120)
225 PF06673 L_lactis_ph-MCP: Lact 21.4 1.8E+02 0.0039 22.7 4.1 36 54-93 3-38 (347)
226 PF11471 Sugarporin_N: Maltopo 21.3 2.1E+02 0.0045 17.4 3.7 27 72-98 31-57 (60)
227 PF08113 CoxIIa: Cytochrome c 20.9 1.3E+02 0.0028 16.3 2.3 7 121-127 18-24 (34)
228 PF01708 Gemini_mov: Geminivir 20.8 33 0.00071 22.9 -0.0 25 105-129 34-58 (91)
229 PF15106 TMEM156: TMEM156 prot 20.7 1.3E+02 0.0028 23.4 3.1 15 108-122 176-190 (226)
230 COG4103 Uncharacterized protei 20.6 1.9E+02 0.0042 21.0 3.9 47 54-103 50-96 (148)
231 TIGR02338 gimC_beta prefoldin, 20.5 2.7E+02 0.006 18.5 5.8 15 54-68 65-79 (110)
232 PF06936 Selenoprotein_S: Sele 20.4 34 0.00073 25.9 0.0 16 104-119 32-47 (190)
233 PF12534 DUF3733: Leucine-rich 20.4 1.5E+02 0.0032 18.5 2.9 21 100-120 19-39 (65)
234 PF08858 IDEAL: IDEAL domain; 20.3 1.2E+02 0.0026 16.5 2.3 17 58-74 11-27 (37)
235 PF14316 DUF4381: Domain of un 20.1 1.6E+02 0.0035 20.7 3.5 20 108-127 21-40 (146)
236 PF13627 LPAM_2: Prokaryotic l 20.1 1.2E+02 0.0026 15.1 2.0 10 122-131 7-16 (24)
237 KOG0972 Huntingtin interacting 20.0 4.9E+02 0.011 21.4 6.5 14 77-90 323-336 (384)
238 PF11190 DUF2976: Protein of u 20.0 1.7E+02 0.0037 19.3 3.3 25 101-127 56-80 (87)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-43 Score=259.12 Aligned_cols=135 Identities=55% Similarity=0.949 Sum_probs=130.4
Q ss_pred ChhhhHhhhCCCCCccccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHH
Q 032590 1 MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLAD 80 (137)
Q Consensus 1 i~~~F~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~ 80 (137)
|+++|.++| |..+.+|.+|+|+.+|+++|++.|+||.++|. .|+++++++||+||+++|.+|||++++|||+||.|++
T Consensus 83 Ik~~F~k~Y-G~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvldRGekiELLVd 160 (217)
T KOG0859|consen 83 IKEDFKKRY-GGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVD 160 (217)
T ss_pred HHHHHHHHh-ccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeec
Confidence 578999999 66688999999999999999999999999998 6999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCC
Q 032590 81 KTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLSVCHGFDCTN 137 (137)
Q Consensus 81 kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~~~~c~g~~C~~ 137 (137)
||++|++++..|++++++++|+|||+|+|+++++++++++++++|++.+||||.|.+
T Consensus 161 KTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~~s 217 (217)
T KOG0859|consen 161 KTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTCPS 217 (217)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999864
No 2
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-30 Score=179.02 Aligned_cols=87 Identities=33% Similarity=0.694 Sum_probs=82.8
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVL 123 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ 123 (137)
.+++.++|+||+||.+||++|++|+||||+||++|++||+.|++.|..|++.|.+++|+|||+|.|+++++++|++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHhh
Q 032590 124 IIWLSVC 130 (137)
Q Consensus 124 ii~~~~c 130 (137)
+|++++.
T Consensus 108 iiii~~~ 114 (116)
T KOG0860|consen 108 VIIIYIF 114 (116)
T ss_pred HHHHHHh
Confidence 8877654
No 3
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.97 E-value=2.9e-30 Score=172.27 Aligned_cols=87 Identities=44% Similarity=0.841 Sum_probs=84.2
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI 124 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~i 124 (137)
|++.++++++++|+++|.+|++++++|||+|++|+++|++|+++|..|+++|++++|++||++||+++++++++++++++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 032590 125 IWLSVCH 131 (137)
Q Consensus 125 i~~~~c~ 131 (137)
|++.+||
T Consensus 83 i~~~~~g 89 (89)
T PF00957_consen 83 IIIVICG 89 (89)
T ss_dssp HHHTT--
T ss_pred HHHHHhC
Confidence 9999997
No 4
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.2e-18 Score=127.85 Aligned_cols=96 Identities=21% Similarity=0.400 Sum_probs=84.4
Q ss_pred hhhhHhhhCCCCCccccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHH
Q 032590 2 RADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADK 81 (137)
Q Consensus 2 ~~~F~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~k 81 (137)
.++|..+.++.+|+...+.. .+| |.|..++..| +||.+.|++.++|+++||+|.||++.|+.+|+||||||+|++|
T Consensus 98 ld~~~~k~~~~~W~~~~~~~--~~~-~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~K 173 (198)
T KOG0861|consen 98 LDEFTTKVPATQWPVGETAD--LSY-PYLDTLLSKY-QDPAEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSK 173 (198)
T ss_pred HHHHhhcCcccccCcCCCcC--CCc-hhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 47888888888888554444 344 4799999888 6799999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhHHHHH
Q 032590 82 TENLREQAQAYKKAGTQIRR 101 (137)
Q Consensus 82 t~~L~~~a~~F~~~a~~l~r 101 (137)
|+.|+.+|+.|+++|++.++
T Consensus 174 Se~Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 174 SENLSLQSKMFYKSAKKTNS 193 (198)
T ss_pred HHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999998763
No 5
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.2e-17 Score=126.19 Aligned_cols=110 Identities=23% Similarity=0.437 Sum_probs=98.7
Q ss_pred ChhhhHhhhCCCCCc-cccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHH
Q 032590 1 MRADFKKRYGGGKAD-TAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLA 79 (137)
Q Consensus 1 i~~~F~~~~~~~~~~-~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~ 79 (137)
+.++|...|+..... ..+||+| .+|++.|++..+.||+ ++..+++.++.+++.+|+.+|.+||+.++.|||.|+.|.
T Consensus 91 L~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~ynd-~r~~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~ 168 (216)
T KOG0862|consen 91 LAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRYND-TRSQRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALS 168 (216)
T ss_pred HHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhh
Confidence 358999999544333 6799999 8999999999999964 666699999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032590 80 DKTENLREQAQAYKKAGTQIRRKMWYQNMKIKL 112 (137)
Q Consensus 80 ~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~i 112 (137)
..+.+|...|..++++|+.++++..|.+|.-++
T Consensus 169 ~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~ 201 (216)
T KOG0862|consen 169 SMASELSSESRKYPKTAKGINRKSLIRKYAAYV 201 (216)
T ss_pred hhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887443
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.54 E-value=2.5e-14 Score=106.75 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=82.5
Q ss_pred hhHhhhCCCCC-ccccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHh
Q 032590 4 DFKKRYGGGKA-DTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKT 82 (137)
Q Consensus 4 ~F~~~~~~~~~-~~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt 82 (137)
+|..+++..++ ++..++.+ .+|++.+++ . | ++|...|++.+++.+++|++.+|.+|++++|+|||+|+.|.++|
T Consensus 92 ~~~~s~~~~~~~d~~~~~~~-~~~d~~~e~--~-y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~s 166 (190)
T COG5143 92 EFLKSSALEQLIDDTVGIMR-VNIDKVIEK--G-Y-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLS 166 (190)
T ss_pred HhhhhhhHhhcccCccchhh-hhHHHHHHh--h-c-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 44445543333 34455666 688888887 2 5 56877799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 032590 83 ENLREQAQAYKKAGTQIRRKMWYQ 106 (137)
Q Consensus 83 ~~L~~~a~~F~~~a~~l~r~~~wk 106 (137)
+.|...|..|++.|++.+..+||+
T Consensus 167 s~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 167 SILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeC
Confidence 999999999999999999999984
No 7
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=98.08 E-value=2.1e-05 Score=59.09 Aligned_cols=81 Identities=22% Similarity=0.310 Sum_probs=71.6
Q ss_pred HHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 46 KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLII 125 (137)
Q Consensus 46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii 125 (137)
....++...+++.++|..|+++.+++|.+..-+.++.+++++++..|++-+.+...++|||.-|+-..++....+.+-.+
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~ 174 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSK 174 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999998888776665544444
Q ss_pred H
Q 032590 126 W 126 (137)
Q Consensus 126 ~ 126 (137)
.
T Consensus 175 ~ 175 (190)
T COG5143 175 M 175 (190)
T ss_pred H
Confidence 3
No 8
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.29 E-value=0.012 Score=38.68 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=55.8
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI 124 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~i 124 (137)
+.++.++..+.+.-+.+.++-+++=+=.++-+.|.+.|..+..+|...++....- .++-+-+.+++++++++++++
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~----~~k~~~i~~~iv~~~~~~i~~ 85 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR----NYKLYIIIIIIVIIIILIIII 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHhHHhhhhhhhhHHHH
Confidence 5677788888888888888888888888889999999999999999887755332 234445555555555555554
Q ss_pred H
Q 032590 125 I 125 (137)
Q Consensus 125 i 125 (137)
.
T Consensus 86 ~ 86 (89)
T PF00957_consen 86 V 86 (89)
T ss_dssp T
T ss_pred H
Confidence 3
No 9
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.97 E-value=0.051 Score=36.07 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=35.5
Q ss_pred HHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 46 KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLII 125 (137)
Q Consensus 46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii 125 (137)
.+..+.+.+.+.-+-...|.+.+.+.-+.|..+.+.=..+...-..=++--+++.|+.|.-.+-+++.+++.++.++||+
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 33333333433333334444444444433333333333333322222333444556666555555555555555555555
Q ss_pred H
Q 032590 126 W 126 (137)
Q Consensus 126 ~ 126 (137)
+
T Consensus 89 ~ 89 (92)
T PF03908_consen 89 W 89 (92)
T ss_pred h
Confidence 4
No 10
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.033 Score=44.20 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=39.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQ 88 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~ 88 (137)
...+.+++.++.||..|+++=-..+=+-|+.+|.+++.-++.+..
T Consensus 179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~n 223 (269)
T KOG0811|consen 179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVN 223 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Confidence 477899999999999999999999999999999998877766643
No 11
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.19 Score=40.45 Aligned_cols=73 Identities=19% Similarity=0.353 Sum_probs=44.8
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENL---REQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILL 119 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L---~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~ 119 (137)
+.+.++...+.|+..+-.+=--.+...||-++.++...++- -..+..=-+.|.+..++.. .+|+++|++++|+
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaR--K~k~i~ii~~iii 281 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKAR--KWKIIIIIILIII 281 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hceeeeehHHHHH
Confidence 66777778888888876666666777888777776544433 3444444556666666653 4444444444443
No 12
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=95.50 E-value=0.63 Score=36.22 Aligned_cols=46 Identities=11% Similarity=0.293 Sum_probs=24.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 032590 76 QNLADKTENLREQAQAYKKAGTQIRRKMW--YQNMKIKLVVLGILLILV 122 (137)
Q Consensus 76 ~~L~~kt~~L~~~a~~F~~~a~~l~r~~~--wkn~k~~iii~~vv~~~~ 122 (137)
..|..-.+.+..+.......+.+++.... |. +.+|+++++|+++++
T Consensus 195 ~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-~~~~~~i~~v~~~Fi 242 (251)
T PF09753_consen 195 KVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-CWTWLMIFVVIIVFI 242 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHH
Confidence 34555555566666677776666665432 11 444444444444333
No 13
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=94.14 E-value=1 Score=29.67 Aligned_cols=75 Identities=13% Similarity=0.375 Sum_probs=54.1
Q ss_pred HHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 48 IKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKK------AGTQIRRKMWYQNMKIKLVVLGILLIL 121 (137)
Q Consensus 48 ~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~------~a~~l~r~~~wkn~k~~iii~~vv~~~ 121 (137)
..+.+.+..+...|.+.+++- ...++.|++.|+.|......|.. .|+++=+++-.+...=.+++.+.+.++
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f 80 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFF 80 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456778889999999888654 56788899999999987777654 466777777777777666665554444
Q ss_pred HHHH
Q 032590 122 VLII 125 (137)
Q Consensus 122 ~~ii 125 (137)
+.++
T Consensus 81 ~~~v 84 (92)
T PF03908_consen 81 LLVV 84 (92)
T ss_pred HHHH
Confidence 4433
No 14
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=93.71 E-value=1.7 Score=34.11 Aligned_cols=72 Identities=13% Similarity=0.267 Sum_probs=37.6
Q ss_pred HHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 49 KVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLRE---QAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120 (137)
Q Consensus 49 ~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~---~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~ 120 (137)
++..-+.|+.....+=-+.+.++.|..|.+++..++-.. ++..-...|-+-.|+..-+++..|+|+++++|+
T Consensus 189 kiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~v 263 (280)
T COG5074 189 KIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHH
Confidence 333344444444444445677888888888777766553 222222334444555554555555555444433
No 15
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=93.04 E-value=0.058 Score=34.75 Aligned_cols=27 Identities=33% Similarity=0.679 Sum_probs=23.7
Q ss_pred ChhhhHhhhCCCCCccccccchhhhhhH
Q 032590 1 MRADFKKRYGGGKADTAIAKSLNKEFGP 28 (137)
Q Consensus 1 i~~~F~~~~~~~~~~~~~~~~~~~~F~~ 28 (137)
|+++|..+|+++++.++.||+| .+|++
T Consensus 56 i~~~F~~~~~~~~~~~a~~~~~-~~F~~ 82 (83)
T PF13774_consen 56 IKQEFIQTYGGDQIKSASPYSF-KEFDS 82 (83)
T ss_dssp HHHHHHHHCTTTTTTTSTTTTT-HHHHH
T ss_pred HHHHHHHHcCcchhcccCCcch-hhcCC
Confidence 4689999997688899999999 89986
No 16
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=2.5 Score=29.50 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=26.6
Q ss_pred HHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 032590 66 DKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKM 103 (137)
Q Consensus 66 ~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~ 103 (137)
+++=+-++|-|.|.+-|+.....|...++.--..+-||
T Consensus 57 ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km 94 (116)
T KOG0860|consen 57 EKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKM 94 (116)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777888999999999998877544444443
No 17
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.28 E-value=0.19 Score=46.52 Aligned_cols=48 Identities=15% Similarity=0.322 Sum_probs=39.7
Q ss_pred HHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032590 60 IMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQN 107 (137)
Q Consensus 60 im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn 107 (137)
....--+.+.+|||+|+.++++|++|.++|.+|...|.++.-++-.+.
T Consensus 942 ~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk 989 (993)
T KOG1983|consen 942 AASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKK 989 (993)
T ss_pred hhhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhh
Confidence 344456778899999999999999999999999999998876654443
No 18
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=90.66 E-value=4.3 Score=31.90 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=41.8
Q ss_pred HHHHHHHHHhHhHHHHHHH-------HhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIML-------ENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLG 116 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~-------~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~ 116 (137)
.-++++.-+++.+.-+-|. +|++.+-..- ++-++.++.=......=-+.||..|.+ -|+-|.+.+|+++
T Consensus 187 ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~---~~~~~n~~~g~~h~d~AvksaRaaRkk-ki~c~gI~~iii~ 262 (280)
T COG5074 187 IKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNV---EDAQENVEQGVGHTDKAVKSARAARKK-KIRCYGICFIIII 262 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhH---hhHHhhHHHhhhhHHHHHHHHHHHHhc-ceehhhhHHHHHH
Confidence 4566666666666555544 3444443332 222333333332222222335444443 4567888888877
Q ss_pred HHHHHHHHHHHHh
Q 032590 117 ILLILVLIIWLSV 129 (137)
Q Consensus 117 vv~~~~~ii~~~~ 129 (137)
+|+.+++-..+++
T Consensus 263 viv~vv~~v~~~v 275 (280)
T COG5074 263 VIVVVVFKVVPFV 275 (280)
T ss_pred HHHHHHhcccchh
Confidence 7777775554433
No 19
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=87.59 E-value=5.1 Score=25.13 Aligned_cols=51 Identities=14% Similarity=0.269 Sum_probs=23.8
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 72 GENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLII 125 (137)
Q Consensus 72 ge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii 125 (137)
.++++.|+..++.+......-..+=.++.-...| -+.++++++|.+++++|
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444444444433322 22345555555444443
No 20
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=87.43 E-value=4.9 Score=24.79 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 76 QNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIW 126 (137)
Q Consensus 76 ~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~ 126 (137)
+.+.+...++-.++..+-+.|++=-|+-+++..+...+..+++-++.|+|-
T Consensus 4 ~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~Ik 54 (61)
T PRK09400 4 NKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIY 54 (61)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667777777778877777787777777666555555555543
No 21
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=87.29 E-value=7.7 Score=28.87 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=41.1
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKA 95 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~ 95 (137)
.-..++.++|++++.-|.+.|+++-+.-++||.+..++..|.+.|......
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~e 159 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESE 159 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999888888888888777777776666543
No 22
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=87.17 E-value=13 Score=29.84 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=41.2
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhH----HHHHHHHHHHHHhHHHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTE----NLREQAQAYKKAGTQIRRKMWYQN 107 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~----~L~~~a~~F~~~a~~l~r~~~wkn 107 (137)
..+..+..-+.|+..|-++==..+.+.|+-++.++-.-+ +|+..++...+.-..-||.--|+-
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~ 261 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRF 261 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchh
Confidence 567777788888888888888888899988887765444 444445555554444444433333
No 23
>PTZ00478 Sec superfamily; Provisional
Probab=86.72 E-value=4.7 Score=26.38 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=38.0
Q ss_pred HHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 69 VDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI 124 (137)
Q Consensus 69 l~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~i 124 (137)
.+..+.++.+.+...+.-.++..|-+.+++=.|+-+.+-.+...+..+++-++.|+
T Consensus 10 ~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~ 65 (81)
T PTZ00478 10 TDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYS 65 (81)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566777777788888888888888888887777777665554444443443
No 24
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=86.36 E-value=19 Score=30.44 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=23.4
Q ss_pred hhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHH
Q 032590 23 NKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENID 66 (137)
Q Consensus 23 ~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~ 66 (137)
|.+|..-..+..++.+ + ..+-+..+.++++.+...|...++
T Consensus 104 N~~~h~gV~~t~~si~-~--an~tv~~l~nqv~~l~~al~~t~~ 144 (418)
T cd07912 104 NDETHDGVVQLTYSLR-N--ANHTVAGIDNQTSDTEASLNVTVE 144 (418)
T ss_pred cHHHhhhHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4566665655555442 1 235566666677777666655554
No 25
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.36 E-value=6.1 Score=27.58 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=37.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHH----HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLAD----KTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILL 119 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~----kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~ 119 (137)
...++.+++.|.-.|..-.+--+++-....-|+.+.+ -|.-|..+=..|+.-|++=.++.| .|.+++++|+
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~-----~~m~~f~lV~ 109 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLL-----CWMAVFSLVA 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHH
Confidence 3667888888888887755444444333333333332 333344455555555555333333 3455554444
Q ss_pred HHH
Q 032590 120 ILV 122 (137)
Q Consensus 120 ~~~ 122 (137)
+++
T Consensus 110 ~fi 112 (118)
T KOG3385|consen 110 FFI 112 (118)
T ss_pred HHH
Confidence 333
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.86 E-value=15 Score=27.98 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHH
Q 032590 71 RGENIQNLADKTENLREQAQAYKKA 95 (137)
Q Consensus 71 Rge~L~~L~~kt~~L~~~a~~F~~~ 95 (137)
+...+++|.+.-++|.++-..-+..
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444666655665554444443
No 27
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.26 E-value=22 Score=27.80 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=10.4
Q ss_pred HHHHHHhHhHHHHHHHHhHHHHHHh
Q 032590 47 LIKVKAQVSEVKSIMLENIDKAVDR 71 (137)
Q Consensus 47 l~~~~~~v~~v~~im~~Ni~~il~R 71 (137)
+...|.++-+=+++.-++|..-+.|
T Consensus 139 ~~~~qqqm~~eQDe~Ld~ls~ti~r 163 (235)
T KOG3202|consen 139 IVQLQQQMLQEQDEGLDGLSATVQR 163 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 28
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=80.21 E-value=26 Score=27.30 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=4.6
Q ss_pred HHHHHHhHhHH
Q 032590 47 LIKVKAQVSEV 57 (137)
Q Consensus 47 l~~~~~~v~~v 57 (137)
+..++.++++|
T Consensus 99 ~~~Lq~~Lk~V 109 (230)
T PF03904_consen 99 QDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHhh
Confidence 34444444443
No 29
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.00 E-value=9.5 Score=30.80 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=29.9
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLAD 80 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~ 80 (137)
..+.++-.-+.|+..||.+=-..+.+.|--+|-+.=
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDy 253 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDY 253 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheec
Confidence 557888888999999999999999999987775543
No 30
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=78.63 E-value=1.6 Score=25.93 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=7.7
Q ss_pred HHHHHHhhc-----CCccC
Q 032590 123 LIIWLSVCH-----GFDCT 136 (137)
Q Consensus 123 ~ii~~~~c~-----g~~C~ 136 (137)
.++.+++|. |++|+
T Consensus 14 ~lLg~~I~~~~K~ygYkht 32 (50)
T PF12606_consen 14 GLLGLSICTTLKAYGYKHT 32 (50)
T ss_pred HHHHHHHHHHhhccccccc
Confidence 334455662 56775
No 31
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=77.44 E-value=6.1 Score=26.06 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHH
Q 032590 96 GTQIRRKMWYQNM 108 (137)
Q Consensus 96 a~~l~r~~~wkn~ 108 (137)
.++.||+..|++.
T Consensus 5 ~kK~K~k~~l~~~ 17 (96)
T PF13800_consen 5 LKKAKRKSRLRTV 17 (96)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 32
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=77.12 E-value=32 Score=26.65 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=22.2
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 77 NLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI 124 (137)
Q Consensus 77 ~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~i 124 (137)
.++..+..|...+......+++ ... ||--.-+++++++.|+ .+++
T Consensus 203 ~~d~n~~~l~~~~~rl~~~~~~-~~~-~~~~~~i~~v~~~Fi~-mvl~ 247 (251)
T PF09753_consen 203 GLDRNLSSLKRESKRLKEHSSK-SWG-CWTWLMIFVVIIVFIM-MVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-ccc-HHHHHHHHHHHHHHHH-HHHH
Confidence 3444455555555555444332 222 7777765554444333 3433
No 33
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=77.08 E-value=17 Score=23.51 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=17.8
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhHHHHHH
Q 032590 73 ENIQNLADKTENLREQAQAYKKAGTQIRRK 102 (137)
Q Consensus 73 e~L~~L~~kt~~L~~~a~~F~~~a~~l~r~ 102 (137)
+|||++++|-|.- .|.-|++..+++=|-
T Consensus 22 ~rLD~iEeKVEft--n~Ei~Qr~GkkvGRD 49 (77)
T PRK01026 22 KRLDEIEEKVEFT--NAEIFQRIGKKVGRD 49 (77)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhHHhhhH
Confidence 3566666665543 456777777777765
No 34
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=76.79 E-value=10 Score=23.35 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 032590 84 NLREQAQAYKKA 95 (137)
Q Consensus 84 ~L~~~a~~F~~~ 95 (137)
+=+++|..|-+.
T Consensus 6 SDnETA~~FL~R 17 (60)
T PF06072_consen 6 SDNETATEFLRR 17 (60)
T ss_pred cccccHHHHHHH
Confidence 334677777664
No 35
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.57 E-value=39 Score=27.32 Aligned_cols=22 Identities=14% Similarity=0.484 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032590 106 QNMKIKLVVLGILLILVLIIWL 127 (137)
Q Consensus 106 kn~k~~iii~~vv~~~~~ii~~ 127 (137)
++-+-|-++++++++++++|++
T Consensus 265 kkaRK~k~i~ii~~iii~~v~v 286 (297)
T KOG0810|consen 265 KKARKWKIIIIIILIIIIVVLV 286 (297)
T ss_pred HHhhhceeeeehHHHHHHHHHh
Confidence 3444555555555555555444
No 36
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.84 E-value=35 Score=26.41 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=8.9
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 032590 76 QNLADKTENLREQAQAYKKA 95 (137)
Q Consensus 76 ~~L~~kt~~L~~~a~~F~~~ 95 (137)
+.|+.-=+.|.+.....-+.
T Consensus 163 e~L~rar~rL~~td~~lgkS 182 (220)
T KOG1666|consen 163 EQLERARERLRETDANLGKS 182 (220)
T ss_pred HHHHHHHHHHHhchhhhhHH
Confidence 34444444444444444443
No 37
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=75.54 E-value=47 Score=27.83 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=6.3
Q ss_pred HHHHHHhHhHHHHHH
Q 032590 47 LIKVKAQVSEVKSIM 61 (137)
Q Consensus 47 l~~~~~~v~~v~~im 61 (137)
+..++.+++++..-|
T Consensus 105 ~~~i~~~v~~~~~~l 119 (406)
T PF04906_consen 105 LSGIDNLVSDTTEAL 119 (406)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 38
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=75.04 E-value=18 Score=22.89 Aligned_cols=28 Identities=14% Similarity=0.439 Sum_probs=17.7
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhHHHHHH
Q 032590 73 ENIQNLADKTENLREQAQAYKKAGTQIRRK 102 (137)
Q Consensus 73 e~L~~L~~kt~~L~~~a~~F~~~a~~l~r~ 102 (137)
+|||++++|-|.- .|.-|++..+++=|-
T Consensus 19 ~rLd~iEeKVEf~--~~E~~Qr~Gkk~GRD 46 (70)
T TIGR01149 19 KRLDEIEEKVEFV--NGEVAQRIGKKVGRD 46 (70)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhHHhhhH
Confidence 3566666665543 456777777777665
No 39
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.33 E-value=36 Score=25.93 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=6.7
Q ss_pred HHHHHHhHHHHHHHHH
Q 032590 76 QNLADKTENLREQAQA 91 (137)
Q Consensus 76 ~~L~~kt~~L~~~a~~ 91 (137)
+.|.+.-+.+++....
T Consensus 142 ~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 142 QKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 40
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=72.91 E-value=1.4 Score=32.22 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=21.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032590 94 KAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLSVC 130 (137)
Q Consensus 94 ~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~~~~c 130 (137)
+.-.+++|.-.| |+..+++++||+++++|++.+|
T Consensus 122 kKEae~kr~K~C---ki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 122 KKEAELKRSKVC---KIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHheEEEEEEEE
Confidence 333445554333 5556666777777888888888
No 41
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=72.80 E-value=73 Score=29.10 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 032590 116 GILLILVLIIWLSVCH 131 (137)
Q Consensus 116 ~vv~~~~~ii~~~~c~ 131 (137)
+|+++.++.++.+.||
T Consensus 426 LIv~~~~lGLl~G~~G 441 (806)
T PF05478_consen 426 LIVLCLLLGLLCGCCG 441 (806)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3444444555689998
No 42
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=71.74 E-value=21 Score=22.04 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 83 ENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIW 126 (137)
Q Consensus 83 ~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~ 126 (137)
.+.-.++..+-+.+++=-|+-+++..+...+..+++-++.|+|-
T Consensus 7 ~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ik 50 (61)
T TIGR00327 7 VEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIK 50 (61)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777788888888888888877766555555555443
No 43
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=70.64 E-value=5.4 Score=25.87 Aligned_cols=7 Identities=43% Similarity=0.861 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 032590 109 KIKLVVL 115 (137)
Q Consensus 109 k~~iii~ 115 (137)
|.+++++
T Consensus 5 kii~iii 11 (85)
T PF11337_consen 5 KIILIII 11 (85)
T ss_pred HHHHHHH
Confidence 3333333
No 44
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=70.29 E-value=3.3 Score=27.88 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 032590 108 MKIKLVVLGILLILVLIIWLSVC 130 (137)
Q Consensus 108 ~k~~iii~~vv~~~~~ii~~~~c 130 (137)
|++++..++.+++++++|.+..|
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~C 63 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCC 63 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHH
Confidence 55666666555555555666655
No 45
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=69.56 E-value=12 Score=24.53 Aligned_cols=19 Identities=0% Similarity=0.121 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032590 99 IRRKMWYQNMKIKLVVLGI 117 (137)
Q Consensus 99 l~r~~~wkn~k~~iii~~v 117 (137)
+|+.-|+..++.+++.+++
T Consensus 5 ~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 5 LKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5666677777777665544
No 46
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=69.46 E-value=43 Score=25.98 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=12.4
Q ss_pred hhhHHHHHHHhHHHHHHHHHHH
Q 032590 72 GENIQNLADKTENLREQAQAYK 93 (137)
Q Consensus 72 ge~L~~L~~kt~~L~~~a~~F~ 93 (137)
|+.|+.|+.+-+++.-.+..-+
T Consensus 14 ~~~L~rle~qi~q~~~~~~~~q 35 (251)
T COG5415 14 TADLSRLESQIHQLDVALKKSQ 35 (251)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655555443
No 47
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=69.44 E-value=10 Score=27.78 Aligned_cols=24 Identities=17% Similarity=0.566 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 032590 108 MKIKLVVLGILLILVLIIWLSVCH 131 (137)
Q Consensus 108 ~k~~iii~~vv~~~~~ii~~~~c~ 131 (137)
+.++|+++++|.++++++.+..|.
T Consensus 30 hm~tILiaIvVliiiiivli~lcs 53 (189)
T PF05568_consen 30 HMYTILIAIVVLIIIIIVLIYLCS 53 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556665555555566774
No 48
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=68.02 E-value=12 Score=23.13 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHh
Q 032590 29 IMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDR 71 (137)
Q Consensus 29 ~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~R 71 (137)
..+..++.|+.+|.......++++=+++...-=..|+.++|+.
T Consensus 18 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 18 EYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555566777777777888999988888877777888777653
No 49
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=66.71 E-value=9.5 Score=35.63 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 88 QAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWL 127 (137)
Q Consensus 88 ~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~~ 127 (137)
+|..--.+--+--+...|+.|+++++..+++++++++.++
T Consensus 1050 tsf~wl~sp~K~~~~i~W~~yr~~il~~l~ililll~l~~ 1089 (1105)
T KOG1326|consen 1050 TSFLWLTSPCKSFKFILWHRYRWYILLLLLILILLLLLAL 1089 (1105)
T ss_pred ccchhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433333444555678999999998877666555544433
No 50
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=65.89 E-value=42 Score=26.18 Aligned_cols=7 Identities=0% Similarity=0.283 Sum_probs=2.9
Q ss_pred hHHHHHH
Q 032590 96 GTQIRRK 102 (137)
Q Consensus 96 a~~l~r~ 102 (137)
+.++.+.
T Consensus 203 Serve~y 209 (244)
T KOG2678|consen 203 SERVEKY 209 (244)
T ss_pred hHHHHHH
Confidence 3344443
No 51
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=65.48 E-value=26 Score=20.73 Aligned_cols=44 Identities=16% Similarity=0.350 Sum_probs=35.0
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQ 88 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~ 88 (137)
+.+..+...+.+++.+..+==..+-+.++-|+.+++..+.....
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 67888889999999988877777888888888888777665543
No 52
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=65.32 E-value=32 Score=21.80 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=18.6
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHhHHHHHH
Q 032590 72 GENIQNLADKTENLREQAQAYKKAGTQIRRK 102 (137)
Q Consensus 72 ge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~ 102 (137)
.+||+.+++|-|.- +|..+++..+++=|-
T Consensus 18 ~~rLd~iEeKvEf~--~~Ei~Qr~GkkiGRD 46 (70)
T PF04210_consen 18 MKRLDEIEEKVEFT--NAEIAQRAGKKIGRD 46 (70)
T ss_pred HHHHHHHHHHHHhH--HHHHHHHHhHHhhhH
Confidence 34566666666543 456777778777765
No 53
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.21 E-value=73 Score=25.82 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTE 83 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~ 83 (137)
.+.+..+...+.|+=+||.+=-..+=+.||-+.-+++..+
T Consensus 226 ~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ 265 (311)
T KOG0812|consen 226 AKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVD 265 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4778889999999999999988888888876655544433
No 54
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.56 E-value=81 Score=25.76 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHH----HhHHHHHHHHHH
Q 032590 25 EFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLAD----KTENLREQAQAY 92 (137)
Q Consensus 25 ~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~----kt~~L~~~a~~F 92 (137)
-|+...+++...+|+......++.+---++..++++|.+. +++..++||-+.+ -|+++++.-...
T Consensus 215 ~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifseh---vl~Q~~~Id~I~d~~~~~teNIk~gNe~i 283 (316)
T KOG3894|consen 215 LLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEH---VLQQDQNIDLIHDLQSGATENIKDGNEEI 283 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccchhhhhhhHHHH
Confidence 4555666666555432223344444445666667777765 4666777776666 344444443333
No 55
>smart00096 UTG Uteroglobin.
Probab=62.06 E-value=27 Score=22.12 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=28.8
Q ss_pred HHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHh
Q 032590 31 KEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDR 71 (137)
Q Consensus 31 ~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~R 71 (137)
...++.|+.+|...+...+++.=+|....-=+.||-++++.
T Consensus 22 ~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 22 EASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34456777788777888888888887666666666666543
No 56
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=61.93 E-value=70 Score=24.48 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhH
Q 032590 24 KEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENI 65 (137)
Q Consensus 24 ~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni 65 (137)
.++...++++.....++|...+.++.++..+..=...|.+.+
T Consensus 87 ~~~~~~~~~l~~l~~d~p~~~~~l~~l~~~i~~~l~~~~~~i 128 (207)
T COG5278 87 EELDQKLEELRALTADDPELLESLDDLEPLIQWKLAEADETI 128 (207)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444556554555554443333333333333
No 57
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.32 E-value=30 Score=26.58 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=40.9
Q ss_pred HhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 032590 52 AQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW 104 (137)
Q Consensus 52 ~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~ 104 (137)
+.+..++..|.+==.-++|+=|++-+=-++-|-|-+.+...+.++...+++-.
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r 177 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGR 177 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHH
Confidence 46778888888877777877777666666666677899999999988887754
No 58
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=60.99 E-value=2.6 Score=37.06 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=0.4
Q ss_pred hhhhHHHHHHHHHH
Q 032590 24 KEFGPIMKEHMKYI 37 (137)
Q Consensus 24 ~~F~~~l~~~~~~~ 37 (137)
.+|+.+|.++.+.+
T Consensus 480 iDfnkel~e~~~n~ 493 (610)
T PF01601_consen 480 IDFNKELDEIFKNL 493 (610)
T ss_dssp -------------S
T ss_pred CChHHHHHHHHHhc
Confidence 46666666666544
No 59
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.31 E-value=48 Score=26.42 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=8.9
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 032590 88 QAQAYKKAGTQIRRKMWYQ 106 (137)
Q Consensus 88 ~a~~F~~~a~~l~r~~~wk 106 (137)
.+..-+..+..|++.+..+
T Consensus 220 a~~nveqg~~~L~kA~~yq 238 (269)
T KOG0811|consen 220 ASVNVEQGTENLRKAAKYQ 238 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444455565555443
No 60
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=60.12 E-value=85 Score=24.85 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=21.2
Q ss_pred hHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHH
Q 032590 55 SEVKSIMLENIDKAVDRGENIQNLADKTENLREQ 88 (137)
Q Consensus 55 ~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~ 88 (137)
++.+.....+.+++-++.++++...++.++++..
T Consensus 22 ~~~~~~~~~~~~~~~e~~~~~~e~~~kaeeaqK~ 55 (306)
T PF04888_consen 22 EQIERASEAQEKKAEEKAEEIEEAQEKAEEAQKA 55 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344445577777777777777777666554
No 61
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=59.11 E-value=15 Score=24.15 Aligned_cols=6 Identities=0% Similarity=0.290 Sum_probs=2.1
Q ss_pred HHHHHH
Q 032590 111 KLVVLG 116 (137)
Q Consensus 111 ~iii~~ 116 (137)
.|++++
T Consensus 29 tILivL 34 (85)
T PF10717_consen 29 TILIVL 34 (85)
T ss_pred HHHHHH
Confidence 333333
No 62
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.05 E-value=42 Score=21.02 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=21.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032590 75 IQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKL 112 (137)
Q Consensus 75 L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~i 112 (137)
++.+.+-+.+...++..|.++..+=-||-+-+-.+-..
T Consensus 4 ~~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~a 41 (67)
T KOG3498|consen 4 VDQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATA 41 (67)
T ss_pred HHHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 44455555555666666666666666665554444433
No 63
>COG5547 Small integral membrane protein [Function unknown]
Probab=58.53 E-value=15 Score=22.60 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032590 104 WYQNMKIKLVVLGILLIL 121 (137)
Q Consensus 104 ~wkn~k~~iii~~vv~~~ 121 (137)
|.+.+|+-+|.+++.+++
T Consensus 3 flk~fkypIIgglvglli 20 (62)
T COG5547 3 FLKKFKYPIIGGLVGLLI 20 (62)
T ss_pred HHHHhccchHHHHHHHHH
Confidence 677888777766555443
No 64
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=58.06 E-value=6.5 Score=32.83 Aligned_cols=14 Identities=21% Similarity=0.788 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhcC
Q 032590 119 LILVLIIWLSVCHG 132 (137)
Q Consensus 119 ~~~~~ii~~~~c~g 132 (137)
-||-|+-||++|+|
T Consensus 382 glvGfLcWwf~crg 395 (397)
T PF03302_consen 382 GLVGFLCWWFICRG 395 (397)
T ss_pred HHHHHHhhheeecc
Confidence 35568889999976
No 65
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=57.27 E-value=18 Score=21.43 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 032590 103 MWYQNMKIKLVVLGIL 118 (137)
Q Consensus 103 ~~wkn~k~~iii~~vv 118 (137)
-||++++..++.+++.
T Consensus 2 e~~~~~~~~iiG~~~G 17 (51)
T PF10031_consen 2 EFWKNHRGKIIGGLIG 17 (51)
T ss_pred hHHHHCcchHHHHHHH
Confidence 4788888666544333
No 66
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=57.13 E-value=41 Score=20.24 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=42.1
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIR 100 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~ 100 (137)
+.+......++++.++-.+-+..+-..++.|.....+..++...-..=.+--+.+.
T Consensus 8 ~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 8 DSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 67778888889999999999998988888888888887777765554444333333
No 67
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=56.49 E-value=35 Score=20.90 Aligned_cols=42 Identities=26% Similarity=0.219 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHH
Q 032590 29 IMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVD 70 (137)
Q Consensus 29 ~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~ 70 (137)
.+...++.|+.+|...+...++|+=+++....=..|+-++++
T Consensus 18 ~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 18 EYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 355566778888877788888887777665555555555543
No 68
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=56.29 E-value=28 Score=19.27 Aligned_cols=17 Identities=18% Similarity=0.573 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032590 102 KMWYQNMKIKLVVLGIL 118 (137)
Q Consensus 102 ~~~wkn~k~~iii~~vv 118 (137)
+.|-||....+.+.+|+
T Consensus 17 qkwirnit~cfal~vv~ 33 (40)
T PF13124_consen 17 QKWIRNITFCFALLVVV 33 (40)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46888876655444433
No 69
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=56.16 E-value=17 Score=23.17 Aligned_cols=18 Identities=50% Similarity=1.052 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 032590 114 VLGILLILVLIIWLSVCH 131 (137)
Q Consensus 114 i~~vv~~~~~ii~~~~c~ 131 (137)
++++++++++++.+.+|+
T Consensus 7 ~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 7 IVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhheeEEEEE
Confidence 334444444444444553
No 70
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=55.55 E-value=59 Score=22.04 Aligned_cols=35 Identities=6% Similarity=0.198 Sum_probs=18.2
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 77 NLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILL 119 (137)
Q Consensus 77 ~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~ 119 (137)
.+.+-+++.+.+.+.|+ +.-|++|...+++-+++.
T Consensus 22 ~I~k~~~~~n~~kk~fk--------ki~~KKyg~~~il~~l~~ 56 (104)
T PF12420_consen 22 YIDKLKKDPNIDKKKFK--------KIIFKKYGLIFILPFLVP 56 (104)
T ss_pred HHHHHhhCCChhHHHHH--------HHHHHHhhHHHHHHHHHH
Confidence 33334444444444443 345677776666555444
No 71
>PHA02911 C-type lectin-like protein; Provisional
Probab=55.30 E-value=33 Score=26.38 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=17.5
Q ss_pred HhhhhHHHHHHHhHHHHHHHHHHHH
Q 032590 70 DRGENIQNLADKTENLREQAQAYKK 94 (137)
Q Consensus 70 ~Rge~L~~L~~kt~~L~~~a~~F~~ 94 (137)
++-..+|.|++++.-+.+.|..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (213)
T PHA02911 2 EMLGPIEVLEEKMKFFADASSIYQK 26 (213)
T ss_pred CccccHHHHHHHHHHHHhhhhhhhh
Confidence 3445677888888777777777665
No 72
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=55.15 E-value=1.3e+02 Score=25.62 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=10.4
Q ss_pred HHhHhHHHHHHHHhHHHHHHh
Q 032590 51 KAQVSEVKSIMLENIDKAVDR 71 (137)
Q Consensus 51 ~~~v~~v~~im~~Ni~~il~R 71 (137)
..+.+++.....+.+...++.
T Consensus 67 ~~~~~~~~~~w~~~~~~~~~~ 87 (569)
T PRK10600 67 LAQLQALQDYWRNELKPALQQ 87 (569)
T ss_pred HHHHHHHHHHHHHhhhHHhhc
Confidence 344455555555555555443
No 73
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=53.56 E-value=25 Score=22.70 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 032590 83 ENLREQAQAYKK 94 (137)
Q Consensus 83 ~~L~~~a~~F~~ 94 (137)
+.|+..|..+..
T Consensus 78 ~~l~~~a~~~~~ 89 (124)
T PF00482_consen 78 EVLEQLADQLRE 89 (124)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 74
>PHA02650 hypothetical protein; Provisional
Probab=52.92 E-value=24 Score=22.95 Aligned_cols=7 Identities=43% Similarity=0.634 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 032590 55 SEVKSIM 61 (137)
Q Consensus 55 ~~v~~im 61 (137)
+-|+.+|
T Consensus 25 ~VVkSVL 31 (81)
T PHA02650 25 DVVKSVL 31 (81)
T ss_pred HHHHHHH
Confidence 3344443
No 75
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=52.79 E-value=35 Score=25.93 Aligned_cols=36 Identities=31% Similarity=0.499 Sum_probs=24.2
Q ss_pred hHhHHHHHHHH--hHHHHHHhhhhHHHHHHHhHHHHHH
Q 032590 53 QVSEVKSIMLE--NIDKAVDRGENIQNLADKTENLREQ 88 (137)
Q Consensus 53 ~v~~v~~im~~--Ni~~il~Rge~L~~L~~kt~~L~~~ 88 (137)
|++.++.+|++ |-+.++||-=.=++|+++-++|+-.
T Consensus 24 q~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE~~ 61 (214)
T PF06837_consen 24 QIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLETD 61 (214)
T ss_pred HHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHhhh
Confidence 45666777764 7778887766666666776666643
No 76
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=52.50 E-value=1.2e+02 Score=28.21 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=6.4
Q ss_pred HHHhHhHHHHHHHH
Q 032590 50 VKAQVSEVKSIMLE 63 (137)
Q Consensus 50 ~~~~v~~v~~im~~ 63 (137)
+-..+++++....+
T Consensus 370 ~s~vv~~~~r~l~q 383 (865)
T KOG4331|consen 370 TSGVVDDVMRDLPQ 383 (865)
T ss_pred ccccchHHHHHHHh
Confidence 33444555544444
No 77
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=52.03 E-value=17 Score=30.38 Aligned_cols=26 Identities=15% Similarity=0.451 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 100 RRKMWYQNMKIKLVVLGILLILVLII 125 (137)
Q Consensus 100 ~r~~~wkn~k~~iii~~vv~~~~~ii 125 (137)
+++-||.+|...+++.+++++++..+
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~~ 319 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGFA 319 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHHH
Confidence 44679999988777665554443333
No 78
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=51.43 E-value=1e+02 Score=23.92 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=23.7
Q ss_pred HHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHH
Q 032590 47 LIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQI 99 (137)
Q Consensus 47 l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l 99 (137)
+..+..+++..+.-...+..+.-......+....++..|.............+
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l 106 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQEL 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444333
No 79
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=51.24 E-value=47 Score=19.24 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=33.7
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQ 88 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~ 88 (137)
+.+..+...+.+++++-.+=-..+-+.++-|+.+++..+.....
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~ 55 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 67888888899998887766666677788888888776665554
No 80
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=51.16 E-value=31 Score=22.67 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032590 107 NMKIKLVVLGILLILVLIIWLSVCHGF 133 (137)
Q Consensus 107 n~k~~iii~~vv~~~~~ii~~~~c~g~ 133 (137)
+.|-.+|+.+++++++.+|+...-.|+
T Consensus 32 ~lKrlliivvVvVlvVvvivg~LLMGL 58 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLVVVVIVGALLMGL 58 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccceEEEEEEeeehhHHHHHHHHHHHh
Confidence 445455555555555555543333333
No 81
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=51.04 E-value=1.2e+02 Score=23.77 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=14.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhHH
Q 032590 77 NLADKTENLREQAQAYKKAGTQ 98 (137)
Q Consensus 77 ~L~~kt~~L~~~a~~F~~~a~~ 98 (137)
.+++.++.|...|...++-+++
T Consensus 191 ~~D~N~~~L~~~Serve~y~ks 212 (244)
T KOG2678|consen 191 GIDVNSQGLMDVSERVEKYDKS 212 (244)
T ss_pred HHhHHHHHHHhhhHHHHHHHHh
Confidence 4556667777777777766644
No 82
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=50.16 E-value=16 Score=26.66 Aligned_cols=19 Identities=21% Similarity=0.537 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032590 112 LVVLGILLILVLIIWLSVC 130 (137)
Q Consensus 112 iii~~vv~~~~~ii~~~~c 130 (137)
+|+++.|.+++.++++.+|
T Consensus 121 lilaisvtvv~~iliii~C 139 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFC 139 (154)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3343333333333333344
No 83
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=49.82 E-value=25 Score=22.99 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 032590 110 IKLVVLGILLILVLIIWLSVC 130 (137)
Q Consensus 110 ~~iii~~vv~~~~~ii~~~~c 130 (137)
+..|++++|.+++.++++.++
T Consensus 6 i~~iialiv~~iiaIvvW~iv 26 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTIV 26 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444444
No 84
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=49.73 E-value=72 Score=20.92 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=21.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 032590 74 NIQNLADKTENLREQAQAYKKAGTQIRRKM 103 (137)
Q Consensus 74 ~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~ 103 (137)
.|+.|++|++.|......+-...++.|+.+
T Consensus 41 ~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 41 CLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 366777777888877777777666666554
No 85
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=49.16 E-value=1.2e+02 Score=23.46 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHH
Q 032590 25 EFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLR 86 (137)
Q Consensus 25 ~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~ 86 (137)
+++..++++|+.. .-.+.|.=+++++|+.--+..+.. +.++++...++++.++-+..-
T Consensus 135 d~~~Ql~Rl~~Rd--~lse~dAe~Rl~sQmp~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~ 192 (225)
T KOG3220|consen 135 DEELQLERLVERD--ELSEEDAENRLQSQMPLEKKCELA--DVVIDNNGSLEDLYEQVEKVL 192 (225)
T ss_pred CcHHHHHHHHHhc--cccHHHHHHHHHhcCCHHHHHHhh--heeecCCCChHHHHHHHHHHH
Confidence 6788899999864 222347778888888877776554 447888888888877766543
No 86
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.19 E-value=1.1e+02 Score=22.44 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=18.4
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVD 70 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~ 70 (137)
....+++.+++.++.-+.+-|.++-.
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888877777766543
No 87
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=48.12 E-value=1.1e+02 Score=22.54 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=37.2
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGT 97 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~ 97 (137)
..+-.+-.+++..-..|..|. +.+|+.+.++-..|+++|......+.
T Consensus 30 ~dlv~la~~iq~Ad~~~~~~t------~~kL~~I~eQi~~Lq~QA~~ile~~~ 76 (159)
T PF10504_consen 30 FDLVDLAQQIQKADSAMRANT------CNKLEVIAEQIRFLQEQARKILEEAE 76 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888888888888 67888999999999988888877553
No 88
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=47.90 E-value=52 Score=18.73 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=31.6
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQ 88 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~ 88 (137)
+.+..+...+.+++++..+=-..+-+-|+.|+.+++..+.....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888887655556666777888777666655544
No 89
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=47.26 E-value=93 Score=21.47 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 032590 90 QAYKKAGTQIRRKMWYQNMKIKLVVLG 116 (137)
Q Consensus 90 ~~F~~~a~~l~r~~~wkn~k~~iii~~ 116 (137)
....+++++ ++.++++|.++.+..+
T Consensus 56 ~~~~~k~~~--~~~~i~kyg~~GL~lF 80 (121)
T PF06695_consen 56 EWLEKKAEK--KSKKIEKYGFWGLALF 80 (121)
T ss_pred HHHHHHHHH--HHHHHHHHhHHHHHHH
Confidence 334444444 6677888876655443
No 90
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=47.14 E-value=75 Score=20.38 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=39.1
Q ss_pred chhhhhhHHHHHHHHHHhhCh----HHHHHHHHHHHhHhHHHHHHHH--hHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH
Q 032590 21 SLNKEFGPIMKEHMKYIIDHA----EEIEKLIKVKAQVSEVKSIMLE--NIDKAVDRGENIQNLADKTENLREQAQAYKK 94 (137)
Q Consensus 21 ~~~~~F~~~l~~~~~~~~~~~----~~~d~l~~~~~~v~~v~~im~~--Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~ 94 (137)
|+..-|.|.|.+.-.....-. .-...+.+...++.+..++-.. .++..- --.||..+..+-..+++.....++
T Consensus 7 Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 7 GLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677666654432111 1124455555555555552211 222222 455566666666666666666666
Q ss_pred HhHHHH
Q 032590 95 AGTQIR 100 (137)
Q Consensus 95 ~a~~l~ 100 (137)
++.+++
T Consensus 86 R~~~L~ 91 (92)
T PF14712_consen 86 RADKLQ 91 (92)
T ss_pred HHHhhc
Confidence 555543
No 91
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=46.89 E-value=33 Score=21.94 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=5.2
Q ss_pred HhHHHHHHHH
Q 032590 54 VSEVKSIMLE 63 (137)
Q Consensus 54 v~~v~~im~~ 63 (137)
++.|+.+|.+
T Consensus 24 i~vVksVltd 33 (72)
T PF12575_consen 24 INVVKSVLTD 33 (72)
T ss_pred HHHHHHHHcC
Confidence 4555555544
No 92
>PHA03386 P10 fibrous body protein; Provisional
Probab=46.79 E-value=62 Score=21.69 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHhHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSI 60 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~i 60 (137)
.+|+..+|.+|++++.-
T Consensus 18 d~KVdaLQ~qV~dv~~n 34 (94)
T PHA03386 18 DTKVDALQTQLNGLEED 34 (94)
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 48899999999998853
No 93
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.41 E-value=21 Score=27.40 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 102 KMWYQNMKIKLVVLGILLILVLIIW 126 (137)
Q Consensus 102 ~~~wkn~k~~iii~~vv~~~~~ii~ 126 (137)
+-||+....++|+++++.+..++-|
T Consensus 15 k~wwkeNGk~li~gviLg~~~lfGW 39 (207)
T COG2976 15 KDWWKENGKALIVGVILGLGGLFGW 39 (207)
T ss_pred HHHHHHCCchhHHHHHHHHHHHHHH
Confidence 4688877777766666655555444
No 94
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=45.67 E-value=74 Score=27.93 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDK 67 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~ 67 (137)
.+.+..++++++.+.++..+|-..
T Consensus 441 ~~~i~~l~~~~~sl~~~v~qnr~~ 464 (561)
T PF00429_consen 441 EDSISALQEQLTSLAEVVLQNRRA 464 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCchh
Confidence 478899999999999988888543
No 95
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=45.53 E-value=79 Score=20.13 Aligned_cols=28 Identities=21% Similarity=0.569 Sum_probs=16.5
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhHHHHHH
Q 032590 73 ENIQNLADKTENLREQAQAYKKAGTQIRRK 102 (137)
Q Consensus 73 e~L~~L~~kt~~L~~~a~~F~~~a~~l~r~ 102 (137)
++||++++|-+.. .+..|++-.+++-|-
T Consensus 22 kRLdeieekvef~--~~Ev~Qr~GkkiGRD 49 (75)
T COG4064 22 KRLDEIEEKVEFV--NGEVYQRIGKKIGRD 49 (75)
T ss_pred HHHHHHHHHHHhh--HHHHHHHHHHHhcch
Confidence 4566666665544 345666666666655
No 96
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=44.88 E-value=1.3e+02 Score=22.43 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=27.1
Q ss_pred HHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH
Q 032590 46 KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKK 94 (137)
Q Consensus 46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~ 94 (137)
.++..+.++++--.-+.+.|+.+-+-..++..|.+|+..|...-..|..
T Consensus 117 ~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 117 QVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555555566666666666666666654
No 97
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.72 E-value=88 Score=24.02 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=19.9
Q ss_pred HhHhHHHHHHHHhHHHHHHhhhhHHHHH
Q 032590 52 AQVSEVKSIMLENIDKAVDRGENIQNLA 79 (137)
Q Consensus 52 ~~v~~v~~im~~Ni~~il~Rge~L~~L~ 79 (137)
+.++-..+.|.++||..|+..+.-|+-+
T Consensus 133 e~Mdm~~Emm~daIDdal~~~edEEEtd 160 (224)
T KOG3230|consen 133 EIMDMKEEMMDDAIDDALGDDEDEEETD 160 (224)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHH
Confidence 3467778899999999997655444333
No 98
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=44.25 E-value=67 Score=23.09 Aligned_cols=48 Identities=15% Similarity=0.309 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHhh-ChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhh
Q 032590 25 EFGPIMKEHMKYIID-HAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGE 73 (137)
Q Consensus 25 ~F~~~l~~~~~~~~~-~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge 73 (137)
.|.+.++++.+.-+. .|. ...+..+..+++.-..-..+-+..+|+.|+
T Consensus 31 ~fk~~l~~L~sTl~~i~P~-i~eI~~~~~eld~~~~ee~e~L~~~L~~g~ 79 (147)
T PF05659_consen 31 SFKSILKRLESTLESIIPI-IKEIDKLNVELDRPRQEEIERLKELLEKGK 79 (147)
T ss_pred hhhhHHHHHHHHHHHhhhH-HHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Confidence 455555554433211 132 244444444555443333333444444443
No 99
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=44.17 E-value=53 Score=19.72 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=16.8
Q ss_pred HHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHH
Q 032590 46 KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQA 89 (137)
Q Consensus 46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a 89 (137)
-+.+++...+.+-+-+..-++. =|.+|++|+..-..|..+|
T Consensus 11 lL~qmq~kFq~mS~~I~~riDe---M~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 11 LLQQMQDKFQTMSDQILGRIDE---MSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhc
Confidence 3444444444444444333333 3556666666655555544
No 100
>COG4499 Predicted membrane protein [Function unknown]
Probab=43.92 E-value=35 Score=28.78 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 85 LREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWL 127 (137)
Q Consensus 85 L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~~ 127 (137)
....-....++-..+.++-| .-+|+. .+|+++++++++||+
T Consensus 198 ~~kE~e~~~kn~a~VpK~k~-~ifk~~-giGliillvl~li~~ 238 (434)
T COG4499 198 YQKETEKINKNYAFVPKKKY-TIFKYF-GIGLIILLVLLLIYF 238 (434)
T ss_pred HHHHHHHHhcceeecccccc-eehhhH-HHhHHHHHHHHHHHH
Confidence 33444444444434444433 444544 455555555666654
No 101
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=43.64 E-value=48 Score=20.43 Aligned_cols=13 Identities=8% Similarity=0.345 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 032590 104 WYQNMKIKLVVLG 116 (137)
Q Consensus 104 ~wkn~k~~iii~~ 116 (137)
|...|.+++++++
T Consensus 3 WladYWWiiLl~l 15 (63)
T PF13980_consen 3 WLADYWWIILLIL 15 (63)
T ss_pred HHHHHHHHHHHHH
Confidence 6677766644433
No 102
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=43.45 E-value=1.2e+02 Score=21.56 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=42.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHH-HhhhhHHHHHHHhHHHHHHHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAV-DRGENIQNLADKTENLREQAQAYKK 94 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il-~Rge~L~~L~~kt~~L~~~a~~F~~ 94 (137)
..++..++.+++++...|.+.|+.+- ...+.+..|..+.+.|...-..|..
T Consensus 9 l~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 9 LRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999999999884 4456778888888888888887765
No 103
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.24 E-value=87 Score=20.00 Aligned_cols=57 Identities=12% Similarity=0.234 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHH
Q 032590 43 EIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQI 99 (137)
Q Consensus 43 ~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l 99 (137)
+.|.+.-++-++++.++--..=-+.+-+-....+.|+...++|++.-...+-+-+.|
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999998876433333344445566777777777777666555544433
No 104
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=42.86 E-value=48 Score=24.90 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032590 103 MWYQNMKIKLVVLGILL 119 (137)
Q Consensus 103 ~~wkn~k~~iii~~vv~ 119 (137)
..|++++++++++++++
T Consensus 16 ~l~r~~~~ill~~ll~~ 32 (226)
T TIGR01006 16 KLWKRKLLILIVALIFL 32 (226)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556555554444443
No 105
>PF07296 TraP: TraP protein; InterPro: IPR009913 This family consists of several bacterial conjugative transfer TraP proteins from Escherichia coli and Salmonella typhimurium. TraP appears to play a minor role in conjugation and may interact with TraB, which varies in sequence along with TraP, in order to stabilise the proposed transmembrane complex formed by the tra operon products [].
Probab=42.65 E-value=1.5e+02 Score=22.56 Aligned_cols=44 Identities=14% Similarity=0.393 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 82 TENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIW 126 (137)
Q Consensus 82 t~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~ 126 (137)
+.++.-.|-.| .-|.-|++-.|.=+|-++.=++-..++++++.|
T Consensus 6 ~~~~a~~a~~~-~Va~vLRWl~W~vky~VI~PlATmaLmalfVlw 49 (202)
T PF07296_consen 6 SSRQAGHALRY-VVARVLRWLFWCVKYAVIWPLATMALMALFVLW 49 (202)
T ss_pred hhHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666 458889999998888777767777777777766
No 106
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=42.62 E-value=34 Score=27.58 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=12.8
Q ss_pred cchhhhhhHHHHHHHHHHhh
Q 032590 20 KSLNKEFGPIMKEHMKYIID 39 (137)
Q Consensus 20 ~~~~~~F~~~l~~~~~~~~~ 39 (137)
|.-+-+=+|++++.|+.+++
T Consensus 50 ~~p~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 50 KNPHYHNDPELKEIIDKLNE 69 (295)
T ss_pred cCCCCCCcHHHHHHHHHHhH
Confidence 33334557888888877753
No 107
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.45 E-value=1.5e+02 Score=23.70 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=36.1
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGT 97 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~ 97 (137)
++++++.+-+..+|+.-.+-=.+|=...+.|+.+.++++.+...-..--++++
T Consensus 218 ~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~ 270 (273)
T KOG3065|consen 218 ENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAK 270 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHH
Confidence 56777777777777776666566666677888888888888755444333333
No 108
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=42.21 E-value=22 Score=28.67 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=3.7
Q ss_pred HHHHHHH
Q 032590 103 MWYQNMK 109 (137)
Q Consensus 103 ~~wkn~k 109 (137)
.+.+|.|
T Consensus 163 kYLkhLK 169 (295)
T TIGR01478 163 NYLKNLK 169 (295)
T ss_pred HHHHhhh
Confidence 4555554
No 109
>PTZ00370 STEVOR; Provisional
Probab=42.14 E-value=29 Score=28.01 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=11.4
Q ss_pred hhhhHHHHHHHHHHhh
Q 032590 24 KEFGPIMKEHMKYIID 39 (137)
Q Consensus 24 ~~F~~~l~~~~~~~~~ 39 (137)
-+=+|.+++.|+.+++
T Consensus 53 YdNDpemK~i~d~~n~ 68 (296)
T PTZ00370 53 YHNDPELKEIIDKMNE 68 (296)
T ss_pred CCCcHHHHHHHHHHhH
Confidence 4557888888877753
No 110
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=41.68 E-value=1e+02 Score=23.55 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=37.1
Q ss_pred cccchhhhhhHHHHHHHH-HHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHH
Q 032590 18 IAKSLNKEFGPIMKEHMK-YIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKA 68 (137)
Q Consensus 18 ~~~~~~~~F~~~l~~~~~-~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~i 68 (137)
.-.+| ..|...+..+-. .-.+||.+..-+.++.++++++...|.+.++.+
T Consensus 35 ~I~Gm-~~~~~~~~~i~~~a~~DdPyAD~~L~~iEe~i~~~~~~l~~~~~~l 85 (217)
T PF08900_consen 35 AIIGM-PGFASRLNRIWRDARQDDPYADWWLLRIEEKINEARQELQELIARL 85 (217)
T ss_pred CCcCH-HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566 577777777653 335779888899999999999998888776544
No 111
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=41.61 E-value=1.4e+02 Score=21.75 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=2.8
Q ss_pred hhhHhhh
Q 032590 3 ADFKKRY 9 (137)
Q Consensus 3 ~~F~~~~ 9 (137)
++|.++.
T Consensus 4 ~efL~~L 10 (181)
T PF08006_consen 4 NEFLNEL 10 (181)
T ss_pred HHHHHHH
Confidence 3444433
No 112
>PHA02844 putative transmembrane protein; Provisional
Probab=41.24 E-value=47 Score=21.35 Aligned_cols=8 Identities=38% Similarity=0.468 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 032590 55 SEVKSIML 62 (137)
Q Consensus 55 ~~v~~im~ 62 (137)
+-|+.+|.
T Consensus 25 ~vVksVLt 32 (75)
T PHA02844 25 DVVKSVLS 32 (75)
T ss_pred HHHHHHHc
Confidence 33444433
No 113
>PRK13664 hypothetical protein; Provisional
Probab=40.87 E-value=60 Score=19.87 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 032590 104 WYQNMKIKLVVL 115 (137)
Q Consensus 104 ~wkn~k~~iii~ 115 (137)
|...|.+++|+.
T Consensus 3 WLadyWWilill 14 (62)
T PRK13664 3 WLAKYWWILVLV 14 (62)
T ss_pred hHHHHHHHHHHH
Confidence 666666664443
No 114
>PHA03054 IMV membrane protein; Provisional
Probab=40.72 E-value=47 Score=21.13 Aligned_cols=8 Identities=38% Similarity=0.422 Sum_probs=3.4
Q ss_pred hHHHHHHH
Q 032590 55 SEVKSIML 62 (137)
Q Consensus 55 ~~v~~im~ 62 (137)
+-|+.+|.
T Consensus 25 ~vV~sVl~ 32 (72)
T PHA03054 25 EIVKSVLS 32 (72)
T ss_pred HHHHHHHc
Confidence 34444443
No 115
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=40.67 E-value=1.4e+02 Score=21.58 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=6.0
Q ss_pred hhhHHHHHHHHHH
Q 032590 25 EFGPIMKEHMKYI 37 (137)
Q Consensus 25 ~F~~~l~~~~~~~ 37 (137)
+|...|.....++
T Consensus 50 ~fk~elE~~~~~w 62 (144)
T PF11657_consen 50 QFKEELEEIASRW 62 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555444333
No 116
>COG1422 Predicted membrane protein [Function unknown]
Probab=40.36 E-value=1.7e+02 Score=22.43 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=30.6
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKK 94 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~ 94 (137)
.++.++|+..+|.|+-+.+--+ -...++|+.|+++=.++.+...++.+
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~--~~d~~~lkkLq~~qmem~~~Q~elmk 119 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQE--SGDMKKLKKLQEKQMEMMDDQRELMK 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888877665432 11345677777766666655554444
No 117
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=39.56 E-value=1.3e+02 Score=20.95 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=8.2
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 032590 94 KAGTQIRRKMWYQNMKIK 111 (137)
Q Consensus 94 ~~a~~l~r~~~wkn~k~~ 111 (137)
++-+.+++++++=++-..
T Consensus 50 ~el~~L~rR~~li~~ai~ 67 (130)
T PF11026_consen 50 RELRILRRRARLIRRAIT 67 (130)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555544444433
No 118
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.37 E-value=1.1e+02 Score=22.01 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 032590 82 TENLREQAQAYKKAGTQIRRKMWYQNMK-IKLVVLGILLILVLIIW 126 (137)
Q Consensus 82 t~~L~~~a~~F~~~a~~l~r~~~wkn~k-~~iii~~vv~~~~~ii~ 126 (137)
.+........+...|...-++++|..-+ .|++.-..+++++-+|+
T Consensus 56 p~g~R~~i~~~~~~av~~~kk~~~fsg~a~Wi~tTt~lIL~vP~i~ 101 (136)
T KOG4111|consen 56 PQGRRSAIGATAGDAVFVVKKLYSFSGKAAWIATTTFLILVVPLIF 101 (136)
T ss_pred chhhhhhhhhcchhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 3344444555555566666666655544 45554444455555544
No 119
>PLN03223 Polycystin cation channel protein; Provisional
Probab=38.91 E-value=96 Score=30.55 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLRE 87 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~ 87 (137)
.+.+.+-++.+-++|.-+.++-.+++++++++.++++|-..|.+
T Consensus 1580 ~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1580 VDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 45666667777788888888889999999999998888777654
No 120
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=38.91 E-value=15 Score=26.97 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 032590 114 VLGILLILVLIIWLSVC 130 (137)
Q Consensus 114 i~~vv~~~~~ii~~~~c 130 (137)
+++||+++++|+++.+|
T Consensus 81 ivgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 81 IVGVICGVIAIVVLIVC 97 (179)
T ss_pred eeehhhHHHHHHHhHhh
Confidence 33333333444444444
No 121
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=38.90 E-value=64 Score=24.93 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 96 GTQIRRKMWYQNMKIKLVVLGILLI 120 (137)
Q Consensus 96 a~~l~r~~~wkn~k~~iii~~vv~~ 120 (137)
.++.-..+|.+.+|.+.++++++++
T Consensus 22 ~~~~~~~~~~k~~r~~Al~alil~i 46 (218)
T PF10039_consen 22 NKKGVFRMWRKYKRAIALAALILFI 46 (218)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3343334565555555555444433
No 122
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=38.66 E-value=85 Score=18.60 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 032590 105 YQNMKIKLVV 114 (137)
Q Consensus 105 wkn~k~~iii 114 (137)
|...++-.++
T Consensus 11 y~tLrigGLi 20 (50)
T PF02038_consen 11 YETLRIGGLI 20 (50)
T ss_dssp HHHHHHHHHH
T ss_pred hhHhhccchH
Confidence 4444544333
No 123
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=38.40 E-value=1.3e+02 Score=21.57 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=34.7
Q ss_pred hhhHhhhCCCCCccccccchhhhhhHHHHHHHHHHhhCh---HHHHHHHHHHHhHhHHHH
Q 032590 3 ADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHA---EEIEKLIKVKAQVSEVKS 59 (137)
Q Consensus 3 ~~F~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~~---~~~d~l~~~~~~v~~v~~ 59 (137)
++|...|++.. ....--|| ......|-.+-.||+..| -....-.++.+|++.+..
T Consensus 73 ndyvsrYRr~~-~v~g~~SF-ttm~TALNsLAGHY~sy~~rPlPeklk~Rl~~El~~AE~ 130 (135)
T TIGR03044 73 NDYISRYRRRP-RVNGLSSF-TTMQTALNSLAGHYKSYANRPLPEKLKERLEKELKKAEK 130 (135)
T ss_pred HHHHHHhcCCC-CcCCcccH-HHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 57889996443 33444456 577788888888886543 222445667777766543
No 124
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=38.25 E-value=1.1e+02 Score=19.60 Aligned_cols=74 Identities=9% Similarity=0.245 Sum_probs=35.3
Q ss_pred ccccchhhhhhHHHHHHH-H-HHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH
Q 032590 17 AIAKSLNKEFGPIMKEHM-K-YIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKK 94 (137)
Q Consensus 17 ~~~~~~~~~F~~~l~~~~-~-~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~ 94 (137)
..||+. ...+|.|.+.. + +|...-. .=+..+.+-+++. +....+++.++.+ ......|..
T Consensus 6 ~LpY~y-~aLeP~is~~t~~~H~~kHh~--~YV~~lN~~~~~~-~~~~~~~~~~~~~--------------~~~~~~~nn 67 (82)
T PF00081_consen 6 PLPYAY-DALEPYISEETMELHHDKHHQ--GYVNNLNKALEKT-ELEGKSLEEIISN--------------ALRAALRNN 67 (82)
T ss_dssp --SSST-TTTTTTS-HHHHHHHHHTHHH--HHHHHHHHHHTTC-HHHTSTHHHHHHH--------------HHHHHHHHH
T ss_pred CCCCCh-hhhhhhhhhHHHHHHHHHHHH--HHHHHHHHHHhcc-ccccccchhhhhh--------------hhhHHHHHH
Confidence 357776 57788877743 2 3322111 2334444444444 3444455555443 223333434
Q ss_pred HhHHHHHHHHHHHH
Q 032590 95 AGTQIRRKMWYQNM 108 (137)
Q Consensus 95 ~a~~l~r~~~wkn~ 108 (137)
.+.-.+-..+|+++
T Consensus 68 ~gg~~NH~~fw~~l 81 (82)
T PF00081_consen 68 AGGHYNHSFFWENL 81 (82)
T ss_dssp HHHHHHHHHHHHTB
T ss_pred cchhhhHHHHHHHc
Confidence 44455566788765
No 125
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=38.16 E-value=75 Score=25.02 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 96 GTQIRRKMWYQNMKIKLVVLGILLILV 122 (137)
Q Consensus 96 a~~l~r~~~wkn~k~~iii~~vv~~~~ 122 (137)
+.+-+-..||..|.+++++++.++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLLLG 235 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455589999998888877654433
No 126
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=37.96 E-value=55 Score=22.08 Aligned_cols=16 Identities=6% Similarity=0.146 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 032590 102 KMWYQNMKIKLVVLGI 117 (137)
Q Consensus 102 ~~~wkn~k~~iii~~v 117 (137)
++.|+.+++.+|++++
T Consensus 2 ~~~~~~~~~~ii~~~l 17 (103)
T PRK14125 2 KLKESKIHVSIFFVLT 17 (103)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4567777666544433
No 127
>PTZ00370 STEVOR; Provisional
Probab=37.88 E-value=27 Score=28.15 Aligned_cols=7 Identities=14% Similarity=0.543 Sum_probs=3.7
Q ss_pred HHHHHHH
Q 032590 103 MWYQNMK 109 (137)
Q Consensus 103 ~~wkn~k 109 (137)
.+.+|.|
T Consensus 163 kYLkhLK 169 (296)
T PTZ00370 163 KYLKHLK 169 (296)
T ss_pred HHHhhhh
Confidence 3555654
No 128
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.80 E-value=1.9e+02 Score=22.28 Aligned_cols=23 Identities=17% Similarity=0.605 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhHHHHHH-HHHH
Q 032590 84 NLREQAQAYKKAGTQIRRK-MWYQ 106 (137)
Q Consensus 84 ~L~~~a~~F~~~a~~l~r~-~~wk 106 (137)
-+...-..|+..|...+.+ |||-
T Consensus 164 ~~R~RE~~FR~tSES~NsRvm~Ws 187 (215)
T KOG1690|consen 164 LQREREETFRDTSESANSRVMWWS 187 (215)
T ss_pred HHHHHHHHHHhhhhhhcceeeehh
Confidence 3344445677777777655 6763
No 129
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.79 E-value=40 Score=22.50 Aligned_cols=17 Identities=35% Similarity=0.290 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032590 109 KIKLVVLGILLILVLII 125 (137)
Q Consensus 109 k~~iii~~vv~~~~~ii 125 (137)
|..++++++++++|+|.
T Consensus 4 K~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLIS 20 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444544444444443
No 130
>PF15339 Afaf: Acrosome formation-associated factor
Probab=37.52 E-value=65 Score=24.20 Aligned_cols=25 Identities=24% Similarity=0.568 Sum_probs=14.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhc
Q 032590 107 NMKIKLVVLGI-LLILVLIIWLSVCH 131 (137)
Q Consensus 107 n~k~~iii~~v-v~~~~~ii~~~~c~ 131 (137)
..|+.+.+|+. .-++++++++.+|.
T Consensus 127 ~~KlkLmLGIsLmTl~lfv~Ll~~c~ 152 (200)
T PF15339_consen 127 ELKLKLMLGISLMTLFLFVILLAFCS 152 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555433 34556777777884
No 131
>COG4327 Predicted membrane protein [Function unknown]
Probab=37.24 E-value=90 Score=21.05 Aligned_cols=31 Identities=16% Similarity=0.494 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 95 AGTQIRRKMWYQNMKIKLVVLGILLILVLII 125 (137)
Q Consensus 95 ~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii 125 (137)
.+..-++-.|..|..++.++.+|-.++-++.
T Consensus 5 ~~~~~a~aywranttli~~lL~vwflVSfvv 35 (101)
T COG4327 5 DAEHPARAYWRANTTLIAALLGVWFLVSFVV 35 (101)
T ss_pred ccccHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444556677777777666555544444433
No 132
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=36.90 E-value=64 Score=26.55 Aligned_cols=17 Identities=47% Similarity=0.751 Sum_probs=14.6
Q ss_pred HHHHHHHHhHhHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIM 61 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im 61 (137)
+.+..++.+++.++.+|
T Consensus 230 ~eL~~iqaqL~tvks~m 246 (372)
T COG3524 230 DELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67788888899999999
No 133
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.64 E-value=1.7e+02 Score=22.46 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 032590 100 RRKMWYQNMKIKLV 113 (137)
Q Consensus 100 ~r~~~wkn~k~~ii 113 (137)
.|-+||.-+-+.++
T Consensus 173 ~Rv~~~Sl~e~~~v 186 (209)
T KOG1693|consen 173 SRVTWWSLLEIIAV 186 (209)
T ss_pred chhhHHHHHHHHHH
Confidence 35578865544333
No 134
>PF15102 TMEM154: TMEM154 protein family
Probab=36.37 E-value=9.7 Score=27.64 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=4.6
Q ss_pred HHHHhhcCC
Q 032590 125 IWLSVCHGF 133 (137)
Q Consensus 125 i~~~~c~g~ 133 (137)
+++.+|.-+
T Consensus 72 Ll~vV~lv~ 80 (146)
T PF15102_consen 72 LLSVVCLVI 80 (146)
T ss_pred HHHHHHhee
Confidence 334466555
No 135
>PF13228 DUF4037: Domain of unknown function (DUF4037)
Probab=36.32 E-value=1.3e+02 Score=20.02 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=32.3
Q ss_pred hChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHH
Q 032590 39 DHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLRE 87 (137)
Q Consensus 39 ~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~ 87 (137)
..|++ =....+..+...+.....-|+.+.++|||-+..-.-.++-+.+
T Consensus 34 ~YP~d-l~~~~ia~~~~~~~qa~~~n~~ra~~R~D~~~~~~~~~~fv~~ 81 (100)
T PF13228_consen 34 YYPED-LRLNKIARNLMLLAQAGQYNLGRALKRGDILAANHAISEFVRS 81 (100)
T ss_pred HChHH-HHHHHHHHHHHHhhhhhHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34665 3455666666666666677999999999988665555544443
No 136
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=35.47 E-value=55 Score=21.93 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032590 98 QIRRKMWYQNMKIKLVVLGI 117 (137)
Q Consensus 98 ~l~r~~~wkn~k~~iii~~v 117 (137)
.....-.|||+.+.+.+.+.
T Consensus 42 ~y~~sh~WRN~GIli~f~i~ 61 (103)
T PF06422_consen 42 GYSYSHRWRNFGILIAFWIF 61 (103)
T ss_pred cccccchhhhHHHHHHHHHH
Confidence 34455678888665544433
No 137
>PRK11901 hypothetical protein; Reviewed
Probab=35.32 E-value=43 Score=27.50 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 032590 111 KLVVLGILLILVLI 124 (137)
Q Consensus 111 ~iii~~vv~~~~~i 124 (137)
++.+|++|+++|+|
T Consensus 39 MiGiGilVLlLLIi 52 (327)
T PRK11901 39 MIGIGILVLLLLII 52 (327)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 138
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=35.23 E-value=2.9e+02 Score=23.76 Aligned_cols=14 Identities=7% Similarity=0.048 Sum_probs=7.1
Q ss_pred HHHHHHhHhHHHHH
Q 032590 47 LIKVKAQVSEVKSI 60 (137)
Q Consensus 47 l~~~~~~v~~v~~i 60 (137)
+..++...++-...
T Consensus 122 ~~~~~~~~~~y~~~ 135 (554)
T PRK15041 122 AAEIKRNYDIYHNA 135 (554)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555443
No 139
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=35.23 E-value=2.4e+02 Score=22.83 Aligned_cols=50 Identities=16% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHH
Q 032590 46 KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRK 102 (137)
Q Consensus 46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~ 102 (137)
++..+-++.++.++.|.++. +..|.+..+++.|+.....+...+..++..
T Consensus 180 ki~~la~eaqe~he~m~k~~-------~~~De~Rkeade~he~~ve~~~~~~e~~ee 229 (294)
T COG1340 180 KIQELANEAQEYHEEMIKLF-------EEADELRKEADELHEEFVELSKKIDELHEE 229 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444455555556666655 456677777777777777776666666654
No 140
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=35.17 E-value=51 Score=29.79 Aligned_cols=28 Identities=21% Similarity=0.685 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032590 104 WYQNMKIKLVVLGILLILVLIIWLSVCH 131 (137)
Q Consensus 104 ~wkn~k~~iii~~vv~~~~~ii~~~~c~ 131 (137)
|..--++...|++++++++.++|+.+|.
T Consensus 678 w~~~~w~~v~i~gi~~i~~m~~fik~~a 705 (764)
T KOG3658|consen 678 WIVLNWLAVNIVGIVLIVLMAFFIKICA 705 (764)
T ss_pred HHHhhhHHhHhHHHHHHHHHHHhhhheE
Confidence 4444445566777777788888888884
No 141
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=34.93 E-value=1e+02 Score=20.25 Aligned_cols=12 Identities=0% Similarity=0.335 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 032590 101 RKMWYQNMKIKL 112 (137)
Q Consensus 101 r~~~wkn~k~~i 112 (137)
++...|.+-+.+
T Consensus 29 N~sfirdFvLVi 40 (84)
T PF06143_consen 29 NRSFIRDFVLVI 40 (84)
T ss_pred ChHHHHHHHHHH
Confidence 445566666533
No 142
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.80 E-value=2.1e+02 Score=22.05 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=17.6
Q ss_pred HhHHHHHHhhh-hHHHHHHHhHHHHHHHHHHHH
Q 032590 63 ENIDKAVDRGE-NIQNLADKTENLREQAQAYKK 94 (137)
Q Consensus 63 ~Ni~~il~Rge-~L~~L~~kt~~L~~~a~~F~~ 94 (137)
.-+|.++++|- -+|+|.++=..|+..-..+..
T Consensus 136 ~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~ 168 (213)
T KOG3251|consen 136 NMLDDLLESGSAILENLVEQRLTLKGTQKKILD 168 (213)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555553 346666666666655555544
No 143
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.32 E-value=3.1e+02 Score=24.16 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=35.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKA 95 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~ 95 (137)
.+.+...++++++++.-=.+|...+.+.-+.++.|........+....|++.
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888877434566677788888887777766655555555443
No 144
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.22 E-value=32 Score=22.34 Aligned_cols=24 Identities=25% Similarity=0.489 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 99 IRRKMWYQNMKIKLVVLGILLILV 122 (137)
Q Consensus 99 l~r~~~wkn~k~~iii~~vv~~~~ 122 (137)
.++|...||...|+-++..+++++
T Consensus 2 INwKvR~kN~~~w~ali~~i~l~v 25 (84)
T PF04531_consen 2 INWKVRFKNKAFWVALISAILLLV 25 (84)
T ss_pred CchhhcccCHHHHHHHHHHHHHHH
Confidence 355666677776666555444433
No 145
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=33.94 E-value=45 Score=25.71 Aligned_cols=37 Identities=24% Similarity=0.550 Sum_probs=23.3
Q ss_pred HHHHHHHHHH----HHHHHHHH-------------HHHH-HHHHHHHHHHhhcCC
Q 032590 97 TQIRRKMWYQ----NMKIKLVV-------------LGIL-LILVLIIWLSVCHGF 133 (137)
Q Consensus 97 ~~l~r~~~wk----n~k~~iii-------------~~vv-~~~~~ii~~~~c~g~ 133 (137)
..+.++.||+ .+|.++.+ +.+. ....++|+..+|.||
T Consensus 96 ~~fw~k~w~eg~~~~ik~Ylfl~kkPh~~~~~NPia~~AyFf~~lmiv~MiltGf 150 (227)
T COG1969 96 VPFWRKAWWEGVWYQIKWYLFLGKKPHTKGGHNPIAQVAYFFYFLMIVFMILTGF 150 (227)
T ss_pred hhhhHHHHHHHHHHHhhhheeecCCCccccccCHHHHHHHHHHHHHHHHHHHHhH
Confidence 3467889999 88887764 2222 333445556677666
No 146
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=32.43 E-value=1.9e+02 Score=21.62 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=30.8
Q ss_pred HhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032590 52 AQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQN 107 (137)
Q Consensus 52 ~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn 107 (137)
+-+.++-.+|.+.+.++++||.-.+-+.+ .|+.=.+-+++.++|=+
T Consensus 126 ~~vk~L~~~mv~Sv~elV~~g~E~~~l~r----------gl~~~e~~v~~~~~~y~ 171 (174)
T PF04510_consen 126 DLVKELLPKMVKSVKELVERGMEVGFLRR----------GLRDFESFVSRQMNWYK 171 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHH----------HHHHHHHHHHHHHHHhh
Confidence 44566777799999999999966544443 34444556777777644
No 147
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=32.26 E-value=78 Score=26.29 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032590 102 KMWYQNMKIKLVVLGIL 118 (137)
Q Consensus 102 ~~~wkn~k~~iii~~vv 118 (137)
..+|++.++++++++++
T Consensus 34 ~~L~r~k~~Il~~~~~~ 50 (377)
T PRK10381 34 SVLWKAKKTIIAITFAF 50 (377)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666555544443
No 148
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=32.25 E-value=1.1e+02 Score=25.25 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=37.8
Q ss_pred hHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032590 64 NIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRR--KMWYQNMKIKLVVLGILLILVLIIWLSVCHG 132 (137)
Q Consensus 64 Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r--~~~wkn~k~~iii~~vv~~~~~ii~~~~c~g 132 (137)
+...-||=+.+.+.|..|-+-..+....+..+...-+- =-| -++++|++-|++.++=|++..|++
T Consensus 264 ~~~~yLdI~~RvnvLN~Rl~vi~d~l~il~e~ln~~~s~~lEW----ivIiLI~~eVllsl~~i~~~~~~~ 330 (331)
T COG1723 264 AVREYLDINPRVNVLNRRLEVISDLLDILNEQLNHSHSTRLEW----IVIILIGLEVLLSLYNIIVKYIGA 330 (331)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeEE----EehhHHHHHHHHHHHHHHHHHhcC
Confidence 44555666778888888877777777766554322111 113 233444455555566677777765
No 149
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=32.19 E-value=1.6e+02 Score=21.65 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 032590 99 IRRKMWYQNMK 109 (137)
Q Consensus 99 l~r~~~wkn~k 109 (137)
.|.||--|-.+
T Consensus 23 ~r~k~~~R~i~ 33 (161)
T PHA02673 23 KRQKAIRRYIK 33 (161)
T ss_pred HHHHHHHHHHH
Confidence 34444433333
No 150
>PHA02975 hypothetical protein; Provisional
Probab=31.65 E-value=79 Score=19.99 Aligned_cols=7 Identities=0% Similarity=0.373 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 032590 55 SEVKSIM 61 (137)
Q Consensus 55 ~~v~~im 61 (137)
+-|+.+|
T Consensus 25 ~vVksVL 31 (69)
T PHA02975 25 DTIMHVL 31 (69)
T ss_pred HHHHHHH
Confidence 3344443
No 151
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=31.53 E-value=38 Score=26.18 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=4.0
Q ss_pred HHHHHHhHH
Q 032590 90 QAYKKAGTQ 98 (137)
Q Consensus 90 ~~F~~~a~~ 98 (137)
..|++....
T Consensus 114 ~~~kk~~CE 122 (227)
T PF05399_consen 114 EIFKKEICE 122 (227)
T ss_pred cccchhhhh
Confidence 445554333
No 152
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=31.06 E-value=1e+02 Score=17.32 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=18.8
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHHHhHH
Q 032590 58 KSIMLENIDKAVDRGENIQNLADKTEN 84 (137)
Q Consensus 58 ~~im~~Ni~~il~Rge~L~~L~~kt~~ 84 (137)
...+.+|-+.+|...+-++.++++-++
T Consensus 9 eeLV~eNK~ell~d~~~me~Ieerie~ 35 (40)
T PF13040_consen 9 EELVRENKQELLNDKEAMEKIEERIEE 35 (40)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 345667777777777777777776553
No 153
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=30.99 E-value=25 Score=23.49 Aligned_cols=11 Identities=27% Similarity=0.860 Sum_probs=5.9
Q ss_pred HHHHHHHHhhc
Q 032590 121 LVLIIWLSVCH 131 (137)
Q Consensus 121 ~~~ii~~~~c~ 131 (137)
+.++.|+++|.
T Consensus 83 v~~l~w~f~~r 93 (96)
T PTZ00382 83 VGFLCWWFVCR 93 (96)
T ss_pred HHHHhheeEEe
Confidence 34555666664
No 154
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=30.95 E-value=1.8e+02 Score=25.03 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=31.1
Q ss_pred HHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHH
Q 032590 46 KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIR 100 (137)
Q Consensus 46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~ 100 (137)
.+.++...++++..+..+|-...-+-..-.+.|.+.+++|.+....|+-...+++
T Consensus 469 ~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fk~~~~~~~ 523 (554)
T PRK15041 469 GIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQQ 523 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 3444445555555555555555555555556666666666666666665444443
No 155
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=30.68 E-value=1.5e+02 Score=19.15 Aligned_cols=18 Identities=28% Similarity=0.733 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032590 100 RRKMWYQNMKIKLVVLGI 117 (137)
Q Consensus 100 ~r~~~wkn~k~~iii~~v 117 (137)
++..|-+|.+++.++.++
T Consensus 3 ~~~yWr~n~rl~~~lL~i 20 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAI 20 (81)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345676777766655443
No 156
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=30.67 E-value=1.1e+02 Score=23.28 Aligned_cols=6 Identities=0% Similarity=0.080 Sum_probs=2.3
Q ss_pred HHHHHH
Q 032590 105 YQNMKI 110 (137)
Q Consensus 105 wkn~k~ 110 (137)
++.-++
T Consensus 19 ~k~~~~ 24 (200)
T PRK10617 19 RTPSRL 24 (200)
T ss_pred HhhHHH
Confidence 333333
No 157
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=30.60 E-value=72 Score=22.96 Aligned_cols=8 Identities=13% Similarity=0.355 Sum_probs=3.1
Q ss_pred HhHHHHHH
Q 032590 54 VSEVKSIM 61 (137)
Q Consensus 54 v~~v~~im 61 (137)
.+.+++-|
T Consensus 66 ~~~~k~~L 73 (145)
T PF10661_consen 66 YEKIKNSL 73 (145)
T ss_pred HHHHHHHh
Confidence 33344333
No 158
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.40 E-value=2.6e+02 Score=21.65 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=40.3
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhh--------hhHHHHHHHh---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRG--------ENIQNLADKT---ENLREQAQAYKKAGTQIRRKMWYQNMKIKLV 113 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rg--------e~L~~L~~kt---~~L~~~a~~F~~~a~~l~r~~~wkn~k~~ii 113 (137)
.-+.++++.-.+++. ++|+.++.+-- ++|+++-.+- +.|+..|..+...++.-+....-=|.+..+.
T Consensus 118 ~~IQk~Kk~ynd~r~--~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~ 195 (216)
T KOG0862|consen 118 TFIQKTKKRYNDTRS--QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIR 195 (216)
T ss_pred HHHHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHH
Confidence 567888888888865 45554444332 3455555444 4455677778777766666665555554444
No 159
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=29.95 E-value=49 Score=25.53 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHhhChH
Q 032590 24 KEFGPIMKEHMKYIIDHAE 42 (137)
Q Consensus 24 ~~F~~~l~~~~~~~~~~~~ 42 (137)
.+|+-.++.+.+.|+.=|.
T Consensus 61 ~sf~lli~a~~Et~~~Lp~ 79 (215)
T PHA02947 61 LSFTLLIKTFKEVISTLPE 79 (215)
T ss_pred HHHHHHHHHHHHHHHhCCH
Confidence 4777777777776654443
No 160
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=29.35 E-value=1e+02 Score=16.64 Aligned_cols=6 Identities=0% Similarity=-0.280 Sum_probs=2.2
Q ss_pred HHHHHH
Q 032590 108 MKIKLV 113 (137)
Q Consensus 108 ~k~~ii 113 (137)
.++..+
T Consensus 8 H~W~Gl 13 (37)
T PF13706_consen 8 HRWLGL 13 (37)
T ss_pred HHHHHH
Confidence 333333
No 161
>PRK09793 methyl-accepting protein IV; Provisional
Probab=29.20 E-value=2.9e+02 Score=23.56 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=17.5
Q ss_pred HHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHH
Q 032590 50 VKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAY 92 (137)
Q Consensus 50 ~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F 92 (137)
+...++++..+..+|-..+-+--...+.|.+.+++|.+....|
T Consensus 469 i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~l~~~v~~F 511 (533)
T PRK09793 469 VAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRVAVF 511 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444443333333333444444444444444444
No 162
>PRK09697 protein secretion protein GspB; Provisional
Probab=29.14 E-value=49 Score=23.15 Aligned_cols=26 Identities=8% Similarity=0.466 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032590 103 MWYQNMKIKLVVLGILLILVLIIWLSVC 130 (137)
Q Consensus 103 ~~wkn~k~~iii~~vv~~~~~ii~~~~c 130 (137)
||-+...- .|+.|+++.++.+|..-|
T Consensus 19 ~~~~~~~~--TI~~Vi~L~~~~L~~AG~ 44 (139)
T PRK09697 19 IFSRQKHS--TIIYVICLLLICLWFAGM 44 (139)
T ss_pred hhhhhhcc--chHHHHHHHHHHHHHhcc
Confidence 56555433 355566666777776666
No 163
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=28.90 E-value=1.2e+02 Score=19.26 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 103 MWYQNMKIKLVVLGILLILVLIIW 126 (137)
Q Consensus 103 ~~wkn~k~~iii~~vv~~~~~ii~ 126 (137)
.||+..|..++..+..+++-+.|.
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~~~ 25 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYAIL 25 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888777766665544443
No 164
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=28.88 E-value=2.5e+02 Score=24.78 Aligned_cols=8 Identities=13% Similarity=0.497 Sum_probs=3.4
Q ss_pred hHHHHHHH
Q 032590 27 GPIMKEHM 34 (137)
Q Consensus 27 ~~~l~~~~ 34 (137)
.|.|.+..
T Consensus 399 rpsl~r~i 406 (538)
T PF05781_consen 399 RPSLQRFI 406 (538)
T ss_pred CCchhhhh
Confidence 34444444
No 165
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.49 E-value=79 Score=22.10 Aligned_cols=78 Identities=9% Similarity=0.187 Sum_probs=31.5
Q ss_pred HHHhHhHHHHHHHHhHHHHHHhhhhH-HHHHHHhHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHH-HHHHHHH
Q 032590 50 VKAQVSEVKSIMLENIDKAVDRGENI-QNLADKTENLREQAQAYKKAGTQIRRKM-----WYQNMKIKLVVL-GILLILV 122 (137)
Q Consensus 50 ~~~~v~~v~~im~~Ni~~il~Rge~L-~~L~~kt~~L~~~a~~F~~~a~~l~r~~-----~wkn~k~~iii~-~vv~~~~ 122 (137)
+..|-++..+-|.+-|..+=.---.+ ++......-|...-..|-..+--|.+-| .-|+=...+... ++.++|.
T Consensus 30 le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV~ 109 (118)
T KOG3385|consen 30 LERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLCWMAVFSLVA 109 (118)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 33455555555555554332211111 2222333333334445555444444433 112222334443 3445555
Q ss_pred HHHHH
Q 032590 123 LIIWL 127 (137)
Q Consensus 123 ~ii~~ 127 (137)
++|++
T Consensus 110 ~fi~~ 114 (118)
T KOG3385|consen 110 FFILW 114 (118)
T ss_pred HHHhh
Confidence 55544
No 166
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=28.01 E-value=1.2e+02 Score=25.51 Aligned_cols=40 Identities=13% Similarity=0.323 Sum_probs=28.1
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032590 74 NIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLV 113 (137)
Q Consensus 74 ~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~ii 113 (137)
..|+..+|+.+---.+++|-..-+.-+|.+|-|.+++-++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (379)
T PRK12430 102 SKDEVIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRII 141 (379)
T ss_pred chhHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666777777777788888888877665
No 167
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=27.64 E-value=44 Score=19.50 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=11.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHH-Hhh
Q 032590 107 NMKIKLVV-LGILLILVLIIWL-SVC 130 (137)
Q Consensus 107 n~k~~iii-~~vv~~~~~ii~~-~~c 130 (137)
++++.+++ ++++|++++...+ +.|
T Consensus 3 k~rwiili~iv~~Cl~lyl~ald~~C 28 (47)
T PRK10299 3 KFRWVVLVVVVLACLLLWAQVFNMMC 28 (47)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 34444443 3444555555443 567
No 168
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=27.46 E-value=3.3e+02 Score=24.78 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=19.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 76 QNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI 124 (137)
Q Consensus 76 ~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~i 124 (137)
+.+.+=++..++.|..|-+ |.||+..++++++.+++++
T Consensus 23 ~~m~~Ia~~I~eGA~aFL~-----------reYk~i~~~~vi~~~ll~~ 60 (682)
T PF03030_consen 23 EKMQEIAAAIQEGAMAFLK-----------REYKTIAIFIVIVAILLFF 60 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555532 4567666655555444433
No 169
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=27.44 E-value=89 Score=22.11 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 104 WYQNMKIKLVVLGILLILVLIIWLS 128 (137)
Q Consensus 104 ~wkn~k~~iii~~vv~~~~~ii~~~ 128 (137)
|-=--|++++|++.-+++++.++..
T Consensus 19 w~iItKWyL~IavaSlI~lyy~v~g 43 (139)
T PF10875_consen 19 WSIITKWYLIIAVASLITLYYTVLG 43 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444578888887777778777754
No 170
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=27.25 E-value=1.1e+02 Score=24.90 Aligned_cols=15 Identities=0% Similarity=-0.013 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 032590 102 KMWYQNMKIKLVVLG 116 (137)
Q Consensus 102 ~~~wkn~k~~iii~~ 116 (137)
...|+++++++++++
T Consensus 25 ~~L~r~k~~Ii~~~~ 39 (325)
T PRK15471 25 VQLWRGKMTIIISVI 39 (325)
T ss_pred HHHHHhhHHHHHHHH
Confidence 456666655544433
No 171
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=27.25 E-value=3.9e+02 Score=22.74 Aligned_cols=33 Identities=12% Similarity=0.354 Sum_probs=21.2
Q ss_pred HHHHH-HHHhhChHHHHHHHHHHHhHhHHHHHHH
Q 032590 30 MKEHM-KYIIDHAEEIEKLIKVKAQVSEVKSIML 62 (137)
Q Consensus 30 l~~~~-~~~~~~~~~~d~l~~~~~~v~~v~~im~ 62 (137)
+.=++ .||.+-.....++..+.+-++++.++..
T Consensus 302 lEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~In 335 (414)
T KOG2662|consen 302 LEMLLEAYFMQIDSTLNKLESLREYIDDTEDIIN 335 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444 4554322345788888888888887765
No 172
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.24 E-value=3e+02 Score=21.36 Aligned_cols=44 Identities=16% Similarity=0.346 Sum_probs=20.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 77 NLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI 124 (137)
Q Consensus 77 ~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~i 124 (137)
-|.+-.++|..+.+....-++++.+ ..+-+++|+++.+++++++
T Consensus 171 rL~~td~~lgkS~kiL~tM~RR~~~----nk~~~~aii~~l~~~il~i 214 (220)
T KOG1666|consen 171 RLRETDANLGKSRKILTTMTRRLIR----NKFTLTAIIALLVLAILLI 214 (220)
T ss_pred HHHhchhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444433 3333444444444443333
No 173
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=26.92 E-value=1.1e+02 Score=16.09 Aligned_cols=9 Identities=11% Similarity=0.379 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 032590 103 MWYQNMKIK 111 (137)
Q Consensus 103 ~~wkn~k~~ 111 (137)
.|++-.++.
T Consensus 4 ~~~~~H~~~ 12 (34)
T PF13172_consen 4 FWRKIHRWL 12 (34)
T ss_pred HHHHHHHHH
Confidence 333333333
No 174
>PF11911 DUF3429: Protein of unknown function (DUF3429); InterPro: IPR021836 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 147 to 245 amino acids in length.
Probab=26.73 E-value=86 Score=22.16 Aligned_cols=25 Identities=24% Similarity=0.836 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 102 KMWYQNMKIKLVVLGILLILVLIIW 126 (137)
Q Consensus 102 ~~~wkn~k~~iii~~vv~~~~~ii~ 126 (137)
..|+..+|..+..++++++++..+|
T Consensus 118 p~wy~~LR~~LT~vv~~~l~~~~~~ 142 (142)
T PF11911_consen 118 PSWYLRLRFRLTAVVVLSLLLALLW 142 (142)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4799999999988888887766553
No 175
>PTZ00046 rifin; Provisional
Probab=26.57 E-value=2.5e+02 Score=23.46 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=31.0
Q ss_pred cchhhhhhHHHHHHHHHHhhChHHHHHHHHH----HHhHhHHHHHHHHhHHHHHHhh
Q 032590 20 KSLNKEFGPIMKEHMKYIIDHAEEIEKLIKV----KAQVSEVKSIMLENIDKAVDRG 72 (137)
Q Consensus 20 ~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~----~~~v~~v~~im~~Ni~~il~Rg 72 (137)
|+-+-+=+|.+++.|+.|+++.. .+..+- +..-..=++-.-.+|++++-.+
T Consensus 47 Y~pnYDNDPeMK~Vme~F~rqTs--QRF~EYdERM~~kRqkcKeqCDKeIQKIILKD 101 (358)
T PTZ00046 47 YSSNYDNDPEMKSVMENFDRQTS--QRFEEYDERMKEKRQKCKEQCDKEIQKIILKD 101 (358)
T ss_pred CCCCCCCcHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 33356778999999999965432 344333 3333444555556777777655
No 176
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=26.54 E-value=2.4e+02 Score=20.09 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhHH
Q 032590 86 REQAQAYKKAGTQ 98 (137)
Q Consensus 86 ~~~a~~F~~~a~~ 98 (137)
.+..+.+.+...+
T Consensus 207 ~~~~~~~~~~~~~ 219 (275)
T PF00664_consen 207 NKALEKYRKASFK 219 (275)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334333333
No 177
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=26.51 E-value=1.1e+02 Score=20.38 Aligned_cols=40 Identities=10% Similarity=0.263 Sum_probs=24.7
Q ss_pred HHhHHHHHHhhhhHHHHHHH--hHHHHHHHHHHHHHhHHHHH
Q 032590 62 LENIDKAVDRGENIQNLADK--TENLREQAQAYKKAGTQIRR 101 (137)
Q Consensus 62 ~~Ni~~il~Rge~L~~L~~k--t~~L~~~a~~F~~~a~~l~r 101 (137)
.+.+..+|.++..|+.+..- ++.|++........|+.++.
T Consensus 4 ~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 4 AGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 44555666666666666665 55566666666666666655
No 178
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=26.12 E-value=2.1e+02 Score=19.29 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 032590 104 WYQNMKIKLVVLGIL 118 (137)
Q Consensus 104 ~wkn~k~~iii~~vv 118 (137)
.-+|||-.+-.+++.
T Consensus 53 ~aknykN~is~a~i~ 67 (108)
T KOG4782|consen 53 FAKNYKNHISFAGIG 67 (108)
T ss_pred HHhhhhhhhhhHHHH
Confidence 456666555444433
No 179
>PF13326 PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF_A 2Y6X_A.
Probab=26.06 E-value=1.4e+02 Score=21.50 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=33.7
Q ss_pred hhhHhhhCCCCCccccccchhhhhhHHHHHHHHHHhhC----hHHHHHHHHHHHhHhHHHH
Q 032590 3 ADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDH----AEEIEKLIKVKAQVSEVKS 59 (137)
Q Consensus 3 ~~F~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~----~~~~d~l~~~~~~v~~v~~ 59 (137)
++|...|.+... ....-|| ..+...|..+-.||+.. |-..+...++.++++++..
T Consensus 85 n~~vs~YRr~~~-v~g~~Sf-~~m~tAln~LaghY~s~g~raPlP~k~k~rll~el~~Ae~ 143 (145)
T PF13326_consen 85 NDYVSRYRRGPS-VSGLPSF-TTMYTALNALAGHYSSYGNRAPLPEKLKERLLKELDQAEK 143 (145)
T ss_dssp HHHHCCCCCCHH-CCTSHHH-HHHHHHHHHHHHHCHHHTTS-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC-cCCcchH-HHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 578888854432 2333455 57778888888888542 3333566777777776654
No 180
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=26.04 E-value=62 Score=27.28 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032590 105 YQNMKIKLVVLGILLILVLIIW 126 (137)
Q Consensus 105 wkn~k~~iii~~vv~~~~~ii~ 126 (137)
|+++-+|.++++.|+++.++.|
T Consensus 406 ~~~~~LW~~Lv~gV~vL~~mA~ 427 (429)
T PF13163_consen 406 WKRWLLWGALVLGVAVLGGMAW 427 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHhe
Confidence 7788888888777766666554
No 181
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=26.01 E-value=2.5e+02 Score=20.08 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=11.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 032590 89 AQAYKKAGTQIRRKMWYQNMKI 110 (137)
Q Consensus 89 a~~F~~~a~~l~r~~~wkn~k~ 110 (137)
+...-....+++|.-+|+++++
T Consensus 78 g~~LV~k~sk~~r~n~~kk~~y 99 (147)
T PF05659_consen 78 GKELVEKCSKVRRWNLYKKPRY 99 (147)
T ss_pred HHHHHHHhccccHHHHHhhHhH
Confidence 3344444556666555666654
No 182
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=25.68 E-value=2.3e+02 Score=19.58 Aligned_cols=59 Identities=15% Similarity=0.320 Sum_probs=40.0
Q ss_pred HHHHHHHHhHhHH----HHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 032590 45 EKLIKVKAQVSEV----KSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKM 103 (137)
Q Consensus 45 d~l~~~~~~v~~v----~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~ 103 (137)
..+.+++.-++++ .....+|-+.+++.-..++.++.-.+.+...-........+++.+.
T Consensus 33 ~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 33 TPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544 4556677778888877777777777777777777777777776654
No 183
>PHA03395 p10 fibrous body protein; Provisional
Probab=25.63 E-value=1.7e+02 Score=19.38 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHhHHHH
Q 032590 44 IEKLIKVKAQVSEVKS 59 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~ 59 (137)
.+|+..+|.+|++++.
T Consensus 17 d~KVdalQ~~V~~l~~ 32 (87)
T PHA03395 17 SDKVDALQAAVDDVRA 32 (87)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4788999999998864
No 184
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.55 E-value=61 Score=21.61 Aligned_cols=9 Identities=44% Similarity=0.874 Sum_probs=4.5
Q ss_pred HHHHHHHhh
Q 032590 122 VLIIWLSVC 130 (137)
Q Consensus 122 ~~ii~~~~c 130 (137)
+++|...+|
T Consensus 46 l~VilwfvC 54 (94)
T PF05393_consen 46 LLVILWFVC 54 (94)
T ss_pred HHHHHHHHH
Confidence 344445555
No 185
>PLN00064 photosystem II protein Psb27; Provisional
Probab=25.50 E-value=2.6e+02 Score=20.66 Aligned_cols=55 Identities=7% Similarity=0.109 Sum_probs=34.2
Q ss_pred hhhHhhhCCCCCccccccchhhhhhHHHHHHHHHHhhC----hHHHHHHHHHHHhHhHHHH
Q 032590 3 ADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDH----AEEIEKLIKVKAQVSEVKS 59 (137)
Q Consensus 3 ~~F~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~----~~~~d~l~~~~~~v~~v~~ 59 (137)
++|...|++.. ....--|| ..+...|-.+--||++. |--...-.++.+|++++..
T Consensus 102 NdyvSrYRr~~-~v~Gl~SF-ttMyTALNaLAGHY~SfgpnrPlPeKlK~RL~qE~~~AEk 160 (166)
T PLN00064 102 NSWVAKYRREK-ALLGRPSF-RDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEK 160 (166)
T ss_pred HHHHHHhcCCC-cccCcccH-HHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 57888995433 34444566 67788888888888544 2222445666777766543
No 186
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=25.42 E-value=1.8e+02 Score=18.18 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=16.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 89 AQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIW 126 (137)
Q Consensus 89 a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~ 126 (137)
...|-+.|++=-|.-+-+-.|...+..+++-++.|+|.
T Consensus 18 ~~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI~ 55 (65)
T COG2443 18 YRRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFIIY 55 (65)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444554444444433344443
No 187
>PRK13739 conjugal transfer protein TraP; Provisional
Probab=25.41 E-value=3e+02 Score=20.85 Aligned_cols=44 Identities=14% Similarity=0.394 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 82 TENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIW 126 (137)
Q Consensus 82 t~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~ 126 (137)
+.++...|-.+ .-|.-||+-.|.=+|-++.=++-..++++++.|
T Consensus 6 ~~~~~~~all~-~va~~LRWL~W~vkyaVIwPlATmaLlv~lvlw 49 (198)
T PRK13739 6 SSRQACHALLY-VVARVLRWLFWCVKYAVIWPLATMALMVLFVLW 49 (198)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555 457789999998888776666766666666666
No 188
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=25.37 E-value=2.2e+02 Score=19.20 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=9.2
Q ss_pred HHhHhHHHHHHHHhHHH
Q 032590 51 KAQVSEVKSIMLENIDK 67 (137)
Q Consensus 51 ~~~v~~v~~im~~Ni~~ 67 (137)
+...++|..-|-.++|+
T Consensus 34 q~~qe~v~~kld~tlD~ 50 (98)
T PF11166_consen 34 QHDQELVNQKLDRTLDE 50 (98)
T ss_pred HhhHHHHHHHHHhhHHH
Confidence 34445555556666655
No 189
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=25.17 E-value=1.7e+02 Score=21.66 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=11.2
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKA 68 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~i 68 (137)
+.+.+...+.+++-+.+.+++++.
T Consensus 156 ~~~~~~l~e~~~~L~~l~~~f~~~ 179 (199)
T PF10112_consen 156 EEIKQSLEEIEETLDTLNQAFEKD 179 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444445554433
No 190
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=24.91 E-value=1.5e+02 Score=17.40 Aligned_cols=12 Identities=0% Similarity=0.138 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 032590 114 VLGILLILVLII 125 (137)
Q Consensus 114 i~~vv~~~~~ii 125 (137)
.++++|++++..
T Consensus 13 F~~lIC~Fl~~~ 24 (54)
T PF06716_consen 13 FGFLICLFLFCL 24 (54)
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 191
>PRK12729 fliE flagellar hook-basal body protein FliE; Provisional
Probab=24.90 E-value=1.8e+02 Score=20.64 Aligned_cols=31 Identities=13% Similarity=-0.001 Sum_probs=16.4
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 032590 72 GENIQNLADKTENLREQAQAYKKAGTQIRRKM 103 (137)
Q Consensus 72 ge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~ 103 (137)
|+...+|.+-.-.++..+-.|+ -+.++|+|.
T Consensus 86 G~~~vdLhdVMIA~qKAslSlq-l~vQVRNKv 116 (127)
T PRK12729 86 DPNSVDAHDVMIASEKARVALT-FTKTIADGV 116 (127)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3333444555555555555663 355666664
No 192
>PF14979 TMEM52: Transmembrane 52
Probab=24.83 E-value=56 Score=23.81 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=5.3
Q ss_pred HHHHHHHhhcCC
Q 032590 122 VLIIWLSVCHGF 133 (137)
Q Consensus 122 ~~ii~~~~c~g~ 133 (137)
++--+...|--|
T Consensus 33 LLCG~ta~C~rf 44 (154)
T PF14979_consen 33 LLCGLTASCVRF 44 (154)
T ss_pred HHHHHHHHHHHH
Confidence 333334556444
No 193
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=24.70 E-value=5.5e+02 Score=24.64 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=43.4
Q ss_pred HHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHH
Q 032590 46 KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQI 99 (137)
Q Consensus 46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l 99 (137)
....+.++.+..+..|.++-.++-+-+++++..++..+.+...-...++++.+.
T Consensus 284 ~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~r 337 (1072)
T KOG0979|consen 284 EKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKR 337 (1072)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677788889999999999999999999999999888877777766543
No 194
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=24.69 E-value=3.3e+02 Score=21.02 Aligned_cols=12 Identities=8% Similarity=-0.036 Sum_probs=6.9
Q ss_pred ccccchhhhhhH
Q 032590 17 AIAKSLNKEFGP 28 (137)
Q Consensus 17 ~~~~~~~~~F~~ 28 (137)
..||.+...+..
T Consensus 17 ~~~~~l~~~~e~ 28 (264)
T PF06008_consen 17 PAPYKLLSSIED 28 (264)
T ss_pred hhHHHHHHHHHH
Confidence 356666555554
No 195
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=24.65 E-value=82 Score=29.84 Aligned_cols=19 Identities=37% Similarity=0.640 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 032590 115 LGILLILVLIIWLSVCHGF 133 (137)
Q Consensus 115 ~~vv~~~~~ii~~~~c~g~ 133 (137)
++++++.+++++++=||-|
T Consensus 987 ~GLLlL~llv~~LwK~GFF 1005 (1030)
T KOG3637|consen 987 GGLLLLALLVLLLWKCGFF 1005 (1030)
T ss_pred HHHHHHHHHHHHHHhcCcc
Confidence 3444555566667889777
No 196
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=24.56 E-value=4.2e+02 Score=22.58 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHH
Q 032590 42 EEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYK 93 (137)
Q Consensus 42 ~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~ 93 (137)
.....+.++...++++.....++....-+-.+..+.|.+.+++|......|+
T Consensus 463 ~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~L~~~v~~fk 514 (553)
T PRK15048 463 EQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFR 514 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 197
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.44 E-value=2.2e+02 Score=23.48 Aligned_cols=38 Identities=11% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHh
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKT 82 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt 82 (137)
..++.+...++++...+.+.-..+-...++|++|++++
T Consensus 151 eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 151 ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
No 198
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=24.40 E-value=1.2e+02 Score=24.89 Aligned_cols=17 Identities=0% Similarity=-0.025 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032590 102 KMWYQNMKIKLVVLGIL 118 (137)
Q Consensus 102 ~~~wkn~k~~iii~~vv 118 (137)
+..|++.++++++.++.
T Consensus 17 ~~Lw~~k~~Ii~~t~~~ 33 (342)
T PRK11638 17 RTLWAGKLWIIGMALLF 33 (342)
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 35666665555444433
No 199
>PHA02692 hypothetical protein; Provisional
Probab=24.35 E-value=1.1e+02 Score=19.44 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=4.4
Q ss_pred HhHHHHHHHH
Q 032590 54 VSEVKSIMLE 63 (137)
Q Consensus 54 v~~v~~im~~ 63 (137)
++-|+.+|.+
T Consensus 24 i~vVksVLtD 33 (70)
T PHA02692 24 LNIVRTVMTE 33 (70)
T ss_pred HHHHHHHHcC
Confidence 3444444443
No 200
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=24.19 E-value=2e+02 Score=18.30 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=8.1
Q ss_pred HHHHHHHHhHhHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIM 61 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im 61 (137)
.-+..++.+++.+..-+
T Consensus 33 ~ti~~l~~~~~~i~~e~ 49 (90)
T PF06103_consen 33 KTIDTLQEQVDPITKEI 49 (90)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 34455555555554433
No 201
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=24.09 E-value=4.9e+02 Score=22.79 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=14.1
Q ss_pred HHHHHHHhHhHHHHHHHHhHHHHHH
Q 032590 46 KLIKVKAQVSEVKSIMLENIDKAVD 70 (137)
Q Consensus 46 ~l~~~~~~v~~v~~im~~Ni~~il~ 70 (137)
-++-++.++.++++-|.+..+..++
T Consensus 128 tv~ti~~qv~~~~~~l~~~~~~~l~ 152 (526)
T KOG4433|consen 128 TVSTIDAQVSDTAEGLNNTAEQLLE 152 (526)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666555444444
No 202
>PRK09662 GspL-like protein; Provisional
Probab=23.91 E-value=64 Score=25.93 Aligned_cols=28 Identities=4% Similarity=0.301 Sum_probs=18.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 90 QAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120 (137)
Q Consensus 90 ~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~ 120 (137)
+.| +.+..+..||+.+|..++++++.++
T Consensus 119 G~f---~~k~~~~~~~~~WR~~Ai~a~l~lv 146 (286)
T PRK09662 119 GPW---QPRVSYRKQWARWRVMILPILLILV 146 (286)
T ss_pred CCC---cccccccchhHhhHHHHHHHHHHHH
Confidence 455 3445667788888887776544433
No 203
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=23.82 E-value=2.9e+02 Score=20.13 Aligned_cols=12 Identities=8% Similarity=0.470 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHH
Q 032590 96 GTQIRRKMWYQN 107 (137)
Q Consensus 96 a~~l~r~~~wkn 107 (137)
..+++.-.-|+.
T Consensus 82 gERl~allsWrd 93 (156)
T PF08372_consen 82 GERLQALLSWRD 93 (156)
T ss_pred HHHHHHhhccCC
Confidence 334444444543
No 204
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=23.75 E-value=76 Score=25.27 Aligned_cols=7 Identities=14% Similarity=0.050 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 032590 111 KLVVLGI 117 (137)
Q Consensus 111 ~iii~~v 117 (137)
-|++|++
T Consensus 274 PIaVG~~ 280 (306)
T PF01299_consen 274 PIAVGAA 280 (306)
T ss_pred HHHHHHH
Confidence 3334433
No 205
>PHA02902 putative IMV membrane protein; Provisional
Probab=23.75 E-value=1.3e+02 Score=18.85 Aligned_cols=15 Identities=27% Similarity=0.704 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 032590 112 LVVLGILLILVLIIW 126 (137)
Q Consensus 112 iii~~vv~~~~~ii~ 126 (137)
+|++++|+++.++|+
T Consensus 7 vi~~v~v~Ivclliy 21 (70)
T PHA02902 7 VILAVIVIIFCLLIY 21 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 206
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=23.30 E-value=2.1e+02 Score=18.12 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHh
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAG 96 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a 96 (137)
..+.++..+++++...|.+.=.=+| ..+|.+.+.-.+++..|..|+=++
T Consensus 17 ~~L~~I~~~~~~i~~~ld~~~~ClL---~e~e~i~~~f~~~q~~AssyYLq~ 65 (70)
T PF10372_consen 17 QYLEQIEEEISQIIQTLDEDDCCLL---CEFEEIREKFLDIQTLASSYYLQC 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHTT-TT--GG---GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCceec---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444322222 246788888888888888887654
No 207
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=23.26 E-value=78 Score=27.43 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=7.1
Q ss_pred HHHHHHHHhHhHHHHH
Q 032590 45 EKLIKVKAQVSEVKSI 60 (137)
Q Consensus 45 d~l~~~~~~v~~v~~i 60 (137)
++++ +-.++.++.+-
T Consensus 432 ~PlD-IS~eL~~vn~s 446 (490)
T PF00523_consen 432 DPLD-ISSELGQVNNS 446 (490)
T ss_dssp SHHH-HHHHHHHHHHH
T ss_pred Cccc-hhhHHHHHHHH
Confidence 4444 44555555443
No 208
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=23.08 E-value=3.7e+02 Score=21.06 Aligned_cols=50 Identities=20% Similarity=0.104 Sum_probs=27.1
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKA 95 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~ 95 (137)
.....+...+.--+++ .+=-++++..-...++|.+++....+.|+.|..+
T Consensus 71 ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ 120 (236)
T KOG3003|consen 71 AEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQ 120 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 4444455444445667777777777777776544
No 209
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=23.06 E-value=1.4e+02 Score=20.13 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 032590 108 MKIKLVVLGILLILVLIIWLSVCH 131 (137)
Q Consensus 108 ~k~~iii~~vv~~~~~ii~~~~c~ 131 (137)
|-+++..+++.+++++ +++.+||
T Consensus 18 Yl~~faGgll~~~il~-~iLYi~G 40 (96)
T PF13571_consen 18 YLFYFAGGLLGLFILF-VILYIAG 40 (96)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhc
Confidence 3344444444444443 4455664
No 210
>COG3771 Predicted membrane protein [Function unknown]
Probab=22.92 E-value=75 Score=21.18 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhcCC
Q 032590 119 LILVLIIWLSVCHGF 133 (137)
Q Consensus 119 ~~~~~ii~~~~c~g~ 133 (137)
..+.+++-+.+||+|
T Consensus 49 F~~G~~lgwli~g~f 63 (97)
T COG3771 49 FAAGFALGWLICGLF 63 (97)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455567788877
No 211
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=22.74 E-value=1.2e+02 Score=24.30 Aligned_cols=33 Identities=24% Similarity=0.551 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQ 76 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~ 76 (137)
.++..+-..||+.+.+.|.+-+++++++|++++
T Consensus 91 ieNFkRs~eEVd~LM~L~~~k~~~~~~~~~~~~ 123 (271)
T KOG1602|consen 91 IENFKRSPEEVDGLMDLALEKIERLLEQGEKLD 123 (271)
T ss_pred hhhhCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 355666667899999999999999999998765
No 212
>PHA03011 hypothetical protein; Provisional
Probab=22.73 E-value=2.6e+02 Score=19.14 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhH
Q 032590 29 IMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTE 83 (137)
Q Consensus 29 ~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~ 83 (137)
.+.++..+||. -.|...-+..+..+...+.++|.+.+.--...++.|.+.-.
T Consensus 65 ~ldeL~~qYN~---L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 65 ILDELIAQYNE---LLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 34444445532 12555666667777777777777766655555555544433
No 213
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.62 E-value=60 Score=25.04 Aligned_cols=20 Identities=10% Similarity=0.443 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032590 101 RKMWYQNMKIKLVVLGILLI 120 (137)
Q Consensus 101 r~~~wkn~k~~iii~~vv~~ 120 (137)
.+-+|.+|+||+|-.++|++
T Consensus 238 eRSF~AKYWMYiiPlglVVl 257 (279)
T KOG4827|consen 238 ERSFLAKYWMYIIPLGLVVL 257 (279)
T ss_pred chhHHHHHHHhhccchhhhh
Confidence 34578889999886655544
No 214
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=22.61 E-value=2.5e+02 Score=24.74 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=18.7
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQN 77 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~ 77 (137)
..++++.+-++.+++-+..=-+.++++.--||-
T Consensus 435 ~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~ 467 (561)
T PF00429_consen 435 EDLQALEDSISALQEQLTSLAEVVLQNRRALDL 467 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 345555555555555555555556776655543
No 215
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=22.17 E-value=29 Score=27.92 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHhHhHHHHHHHHhHHHHHHhhhh
Q 032590 46 KLIKVKAQVSEVKSIMLENIDKAVDRGEN 74 (137)
Q Consensus 46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~ 74 (137)
.+.++...+-+-.+-..+...++|.-+-+
T Consensus 68 eI~~L~~~L~~~~g~~~~~f~~am~pef~ 96 (290)
T PF05454_consen 68 EIEKLRKRLVDDDGKPSQEFVRAMGPEFK 96 (290)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHhCCCCc
Confidence 34444444433344444444444444433
No 216
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.15 E-value=3.9e+02 Score=20.89 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHH
Q 032590 61 MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQ-----IRRKMWYQNMKIKLVV 114 (137)
Q Consensus 61 m~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~-----l~r~~~wkn~k~~iii 114 (137)
+.-+++.+.++-+++..--.++..+++-+..+..+=+. ..|--||.-.-...++
T Consensus 151 Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi 209 (236)
T KOG3287|consen 151 LDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMI 209 (236)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHH
Confidence 33455555555556666666677777666666554443 3344577666554433
No 217
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=22.02 E-value=2.9e+02 Score=22.25 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHH
Q 032590 86 REQAQAYKKAGTQIRRKMWYQ----NMKIKLVVLGIL 118 (137)
Q Consensus 86 ~~~a~~F~~~a~~l~r~~~wk----n~k~~iii~~vv 118 (137)
...+...+...++|.+.+-.+ .+++++.++++|
T Consensus 233 ~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~v 269 (283)
T COG5325 233 ENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLV 269 (283)
T ss_pred hhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHH
Confidence 345556666677777766433 334555544333
No 218
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=21.91 E-value=1.1e+02 Score=20.37 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=4.1
Q ss_pred HHHHHHHH
Q 032590 101 RKMWYQNM 108 (137)
Q Consensus 101 r~~~wkn~ 108 (137)
|-.+||+.
T Consensus 3 ~yp~WKyl 10 (101)
T PF13721_consen 3 RYPLWKYL 10 (101)
T ss_pred CcchHHHH
Confidence 44566544
No 219
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.73 E-value=2.1e+02 Score=17.63 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 032590 83 ENLREQAQAYKKAGTQIRR 101 (137)
Q Consensus 83 ~~L~~~a~~F~~~a~~l~r 101 (137)
.++...-.....+.+.+-|
T Consensus 37 ~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 37 KNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444445444444444
No 220
>PF13675 PilJ: Type IV pili methyl-accepting chemotaxis transducer N-term; PDB: 3EZI_D 3EZH_B.
Probab=21.71 E-value=1.8e+02 Score=18.85 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=2.6
Q ss_pred hhhhHHHHHHHH
Q 032590 24 KEFGPIMKEHMK 35 (137)
Q Consensus 24 ~~F~~~l~~~~~ 35 (137)
..|+..+..+..
T Consensus 53 ~~f~~~l~~L~~ 64 (112)
T PF13675_consen 53 AEFEQSLQALQN 64 (112)
T ss_dssp T------HHHHH
T ss_pred HHHHHHHHHHHc
Confidence 345555544443
No 221
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=21.70 E-value=3.6e+02 Score=20.97 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=37.9
Q ss_pred HHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032590 62 LENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGIL 118 (137)
Q Consensus 62 ~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv 118 (137)
++.+++++.-|....+|+.|.--|=..-..--+..|+.---...+..|+|..++=|+
T Consensus 6 hdKLEKLISyGN~MGDLVaKvGGLFAeVNESVRaVRkeiP~ALikaNKYYTAiAEI~ 62 (231)
T PF03238_consen 6 HDKLEKLISYGNEMGDLVAKVGGLFAEVNESVRAVRKEIPGALIKANKYYTAIAEIV 62 (231)
T ss_pred hhhHHHHHHcCcchhhHHHhccchhHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 356777777888888888887777666665555444444446777777777665443
No 222
>PF13044 DUF3904: Protein of unknown function (DUF3904)
Probab=21.66 E-value=1e+02 Score=24.79 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032590 98 QIRRKMWYQNMKIKLVVLGILLI 120 (137)
Q Consensus 98 ~l~r~~~wkn~k~~iii~~vv~~ 120 (137)
.+--..||--+--|+|++++|++
T Consensus 402 evtgtswwmvmihyiivgliviv 424 (436)
T PF13044_consen 402 EVTGTSWWMVMIHYIIVGLIVIV 424 (436)
T ss_pred hccCcchHHHHHHHHHHHHHHHH
Confidence 34444588777777777655543
No 223
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.65 E-value=4.1e+02 Score=21.30 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=32.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADK 81 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~k 81 (137)
.=++.++++++..++..+.+.=..+++...+|.+|--.
T Consensus 224 ~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 224 MVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 35788999999999999999999999999999888654
No 224
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.57 E-value=2.9e+02 Score=19.19 Aligned_cols=8 Identities=0% Similarity=0.243 Sum_probs=3.0
Q ss_pred hhhHHHHH
Q 032590 25 EFGPIMKE 32 (137)
Q Consensus 25 ~F~~~l~~ 32 (137)
.++..|++
T Consensus 20 ~L~s~lr~ 27 (120)
T PF12325_consen 20 RLQSQLRR 27 (120)
T ss_pred HHHHHHHH
Confidence 33333333
No 225
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=21.42 E-value=1.8e+02 Score=22.66 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=17.5
Q ss_pred HhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHH
Q 032590 54 VSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYK 93 (137)
Q Consensus 54 v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~ 93 (137)
|+++++.|.+.| +-|-+..+|+.+.++|...-...+
T Consensus 3 vnetqemmkqai----eagvkvreleakveelnkereelk 38 (347)
T PF06673_consen 3 VNETQEMMKQAI----EAGVKVRELEAKVEELNKEREELK 38 (347)
T ss_pred ccHHHHHHHHHH----HhccchHHHHHHHHHHHHHHHHHH
Confidence 345555555443 344555555555555554444443
No 226
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=21.29 E-value=2.1e+02 Score=17.41 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=17.3
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHhHH
Q 032590 72 GENIQNLADKTENLREQAQAYKKAGTQ 98 (137)
Q Consensus 72 ge~L~~L~~kt~~L~~~a~~F~~~a~~ 98 (137)
++||..|+.+-......+...+.+++.
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666776666666666666665544
No 227
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=20.87 E-value=1.3e+02 Score=16.31 Aligned_cols=7 Identities=29% Similarity=1.398 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 032590 121 LVLIIWL 127 (137)
Q Consensus 121 ~~~ii~~ 127 (137)
++++.|.
T Consensus 18 ~ILvFWf 24 (34)
T PF08113_consen 18 FILVFWF 24 (34)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 228
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=20.78 E-value=33 Score=22.89 Aligned_cols=25 Identities=0% Similarity=-0.031 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032590 105 YQNMKIKLVVLGILLILVLIIWLSV 129 (137)
Q Consensus 105 wkn~k~~iii~~vv~~~~~ii~~~~ 129 (137)
|.++-..+|+.++.++++++.|..+
T Consensus 34 ws~vv~v~i~~lvaVg~~YL~y~~f 58 (91)
T PF01708_consen 34 WSRVVEVAIFTLVAVGCLYLAYTWF 58 (91)
T ss_pred ceeEeeeeehHHHHHHHHHHHHHHH
Confidence 4444445556666666667666544
No 229
>PF15106 TMEM156: TMEM156 protein family
Probab=20.66 E-value=1.3e+02 Score=23.36 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 032590 108 MKIKLVVLGILLILV 122 (137)
Q Consensus 108 ~k~~iii~~vv~~~~ 122 (137)
..||+++.+|.++++
T Consensus 176 ITWYvLVllVfifli 190 (226)
T PF15106_consen 176 ITWYVLVLLVFIFLI 190 (226)
T ss_pred hHHHHHHHHHHHHHH
Confidence 334544444443333
No 230
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.60 E-value=1.9e+02 Score=20.96 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=31.0
Q ss_pred HhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 032590 54 VSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKM 103 (137)
Q Consensus 54 v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~ 103 (137)
...-+.+..+|.. =-|+.|+.|....++-..+|..+++.+..++|.+
T Consensus 50 ~~a~r~il~~~f~---i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~L 96 (148)
T COG4103 50 REAFRAILKENFG---IDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHL 96 (148)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3444555555542 1366777777777777788888888777777654
No 231
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.50 E-value=2.7e+02 Score=18.54 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=5.9
Q ss_pred HhHHHHHHHHhHHHH
Q 032590 54 VSEVKSIMLENIDKA 68 (137)
Q Consensus 54 v~~v~~im~~Ni~~i 68 (137)
++++.....++++.+
T Consensus 65 ~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 65 KEEAIQELKEKKETL 79 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 232
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=20.44 E-value=34 Score=25.86 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 032590 104 WYQNMKIKLVVLGILL 119 (137)
Q Consensus 104 ~wkn~k~~iii~~vv~ 119 (137)
+..+|.|||++++|++
T Consensus 32 ~L~~yGWyil~~~I~l 47 (190)
T PF06936_consen 32 FLSSYGWYILFGCILL 47 (190)
T ss_dssp ----------------
T ss_pred HHHHhCHHHHHHHHHH
Confidence 4678888887666553
No 233
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=20.38 E-value=1.5e+02 Score=18.48 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032590 100 RRKMWYQNMKIKLVVLGILLI 120 (137)
Q Consensus 100 ~r~~~wkn~k~~iii~~vv~~ 120 (137)
.-+-||-.+-.|+.++-.++.
T Consensus 19 ~lkPWwdvf~~YL~~~mlmi~ 39 (65)
T PF12534_consen 19 ILKPWWDVFFDYLVLLMLMIF 39 (65)
T ss_pred HHccHHHHHHHHHHHHHHHHH
Confidence 345899999998877654443
No 234
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=20.28 E-value=1.2e+02 Score=16.47 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHhhhh
Q 032590 58 KSIMLENIDKAVDRGEN 74 (137)
Q Consensus 58 ~~im~~Ni~~il~Rge~ 74 (137)
+.-+.+.||..|++|++
T Consensus 11 ~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 11 KEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 44566789999998876
No 235
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=20.11 E-value=1.6e+02 Score=20.72 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032590 108 MKIKLVVLGILLILVLIIWL 127 (137)
Q Consensus 108 ~k~~iii~~vv~~~~~ii~~ 127 (137)
..+++++++++++++++++.
T Consensus 21 ~GWwll~~lll~~~~~~~~~ 40 (146)
T PF14316_consen 21 PGWWLLLALLLLLLILLLWR 40 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666655555555443
No 236
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=20.05 E-value=1.2e+02 Score=15.11 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=6.2
Q ss_pred HHHHHHHhhc
Q 032590 122 VLIIWLSVCH 131 (137)
Q Consensus 122 ~~ii~~~~c~ 131 (137)
+....++.||
T Consensus 7 ~~~~~LsgCG 16 (24)
T PF13627_consen 7 ALALALSGCG 16 (24)
T ss_pred HHHHHHHhcc
Confidence 3345568896
No 237
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=20.05 E-value=4.9e+02 Score=21.41 Aligned_cols=14 Identities=7% Similarity=0.337 Sum_probs=6.6
Q ss_pred HHHHHhHHHHHHHH
Q 032590 77 NLADKTENLREQAQ 90 (137)
Q Consensus 77 ~L~~kt~~L~~~a~ 90 (137)
+++++-..|++.|.
T Consensus 323 emEe~G~~msDGap 336 (384)
T KOG0972|consen 323 EMEEQGAKMSDGAP 336 (384)
T ss_pred HHHHhcccccCCch
Confidence 34444455555443
No 238
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=20.01 E-value=1.7e+02 Score=19.29 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 101 RKMWYQNMKIKLVVLGILLILVLIIWL 127 (137)
Q Consensus 101 r~~~wkn~k~~iii~~vv~~~~~ii~~ 127 (137)
.|.=|..+...++++++++ +++||+
T Consensus 56 gK~~W~~fg~~~vVGvvLl--v~viwL 80 (87)
T PF11190_consen 56 GKKTWGDFGATVVVGVVLL--VFVIWL 80 (87)
T ss_pred CcccHHHhhhHHHHHHHHH--HHHHHH
Confidence 4556788888877776654 344553
Done!