Query 032590
Match_columns 137
No_of_seqs 134 out of 937
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_A Vesicle-associated memb 100.0 5.4E-33 1.8E-37 185.6 12.8 87 44-130 4-90 (91)
2 2kog_A Vesicle-associated memb 100.0 7.3E-32 2.5E-36 188.0 0.2 87 44-130 32-118 (119)
3 4b93_A Vesicle-associated memb 100.0 4.4E-32 1.5E-36 202.5 -8.4 107 1-109 83-189 (189)
4 2nut_C Vesicle-trafficking pro 99.9 3.9E-29 1.3E-33 187.2 -0.7 104 1-107 92-196 (196)
5 2nps_A VAMP-4, vesicle-associa 99.9 9.1E-27 3.1E-31 149.9 4.3 72 40-111 3-74 (74)
6 1sfc_A VAMP 2, protein (synapt 99.9 3.8E-25 1.3E-29 148.8 9.1 68 44-111 29-96 (96)
7 1l4a_A Synaptobrevin; snare, s 99.9 3.7E-26 1.3E-30 149.1 0.6 70 41-110 11-80 (80)
8 1n7s_A Vesicle-associated memb 99.9 1.8E-22 6.1E-27 126.0 7.8 61 44-104 3-63 (63)
9 3b5n_A Synaptobrevin homolog 1 99.9 2.9E-22 9.8E-27 124.3 8.4 60 45-104 2-61 (61)
10 3kyq_A YKT6, synaptobrevin hom 99.8 3.8E-23 1.3E-27 155.3 -5.4 95 1-101 98-194 (199)
11 1gl2_A Endobrevin; membrane pr 99.8 1.1E-20 3.9E-25 118.5 6.6 62 40-101 4-65 (65)
12 1urq_A M-tomosyn isoform; tran 99.8 2E-18 6.7E-23 107.4 7.1 59 45-103 4-62 (63)
13 3zym_A Phosphatidylinositol-bi 98.3 3E-07 1E-11 72.8 4.2 54 22-75 243-310 (310)
14 3fie_C Fragment of vesicle-ass 98.2 1.1E-09 3.8E-14 61.2 -9.0 29 45-73 9-37 (38)
15 3hd7_B Syntaxin-1A; membrane p 97.6 0.0048 1.6E-07 41.5 13.2 43 45-87 21-63 (109)
16 3hd7_A Vesicle-associated memb 96.3 0.11 3.8E-06 33.6 11.4 76 45-124 12-87 (91)
17 2kog_A Vesicle-associated memb 91.8 0.081 2.8E-06 36.0 2.1 60 45-104 40-99 (119)
18 3hd7_B Syntaxin-1A; membrane p 90.1 2.8 9.7E-05 27.6 12.3 8 58-65 47-54 (109)
19 2vx8_A Nucleoporin-like protei 89.4 0.062 2.1E-06 38.7 -0.2 30 11-40 134-163 (169)
20 1rh5_B Preprotein translocase 84.1 1.3 4.3E-05 27.6 3.7 53 74-126 4-56 (74)
21 2ww9_B Protein transport prote 81.2 2.1 7.3E-05 27.0 4.0 48 78-125 21-68 (80)
22 1jth_B Syntaxin 1A; coiled-coi 80.5 7.7 0.00026 23.7 8.0 43 45-87 10-52 (77)
23 1urq_A M-tomosyn isoform; tran 80.5 7.1 0.00024 23.3 7.8 50 45-94 11-60 (63)
24 1n7s_A Vesicle-associated memb 76.8 9 0.00031 22.5 8.3 49 45-93 11-59 (63)
25 1t3j_A Mitofusin 1; coiled coi 76.8 13 0.00043 24.2 8.6 47 45-91 36-82 (96)
26 2knc_A Integrin alpha-IIB; tra 74.1 3.6 0.00012 24.0 3.3 19 116-134 22-40 (54)
27 2k1a_A Integrin alpha-IIB; sin 73.6 6.9 0.00023 21.6 4.2 19 116-134 20-38 (42)
28 3b5n_A Synaptobrevin homolog 1 72.9 12 0.0004 21.9 8.3 49 46-94 10-58 (61)
29 2wwb_B SEC61gamma, protein tra 72.6 1.2 4E-05 27.3 0.9 51 75-125 4-54 (68)
30 1sfc_A VAMP 2, protein (synapt 72.5 16 0.00056 23.4 9.3 52 45-96 37-88 (96)
31 2l8s_A Integrin alpha-1; trans 72.4 4.3 0.00015 23.7 3.3 18 116-133 19-36 (54)
32 1utg_A Uteroglobin; steroid bi 66.2 7.8 0.00027 23.5 3.7 42 30-71 21-62 (70)
33 1n7s_B Syntaxin 1A; neuronal s 64.1 20 0.00068 21.2 7.1 44 45-88 12-55 (68)
34 1ccd_A Clara cell 17 KD protei 63.5 9 0.00031 23.7 3.7 42 30-71 23-64 (77)
35 1gl2_B Syntaxin 7; membrane pr 63.5 20 0.00069 21.0 7.1 45 45-89 9-53 (65)
36 3mp7_B Preprotein translocase 61.0 6.7 0.00023 23.3 2.6 49 78-126 4-52 (61)
37 2nps_B Syntaxin 13, vesicle-as 60.6 24 0.00083 21.0 8.6 43 45-87 6-48 (71)
38 2nps_A VAMP-4, vesicle-associa 59.2 27 0.00092 21.1 6.8 53 45-97 15-67 (74)
39 3b5n_B Protein SSO1; snare com 58.4 26 0.0009 20.7 8.8 44 45-88 10-53 (69)
40 2zxe_G FXYD10, phospholemman-l 56.9 18 0.00062 22.3 4.1 31 105-136 16-46 (74)
41 1nhl_A Synaptosomal-associated 56.3 25 0.00087 19.9 6.6 41 50-90 5-45 (54)
42 1txp_A HnRNP C, heterogeneous 51.0 12 0.0004 18.7 2.1 24 49-76 3-26 (28)
43 1l4a_A Synaptobrevin; snare, s 49.6 21 0.00072 21.9 3.7 52 45-96 22-73 (80)
44 2y6x_A PSB27, photosystem II 1 48.4 43 0.0015 22.2 5.3 56 3-60 48-106 (113)
45 3j1r_A Archaeal adhesion filam 48.2 21 0.00072 17.4 2.7 16 112-127 10-25 (26)
46 2ww9_B Protein transport prote 47.5 26 0.0009 21.9 3.9 51 71-121 7-60 (80)
47 1utr_A Uteroglobin; clara cell 47.3 13 0.00044 23.8 2.5 42 30-71 42-83 (96)
48 2ygg_A Sodium/hydrogen exchang 47.3 20 0.00068 21.9 3.2 22 52-73 7-28 (70)
49 1zkr_A Major allergen I polype 46.9 38 0.0013 23.8 5.0 43 30-72 22-65 (153)
50 3fym_A Putative uncharacterize 45.6 4.4 0.00015 27.1 0.0 23 105-127 102-124 (130)
51 3h3g_B Parathyroid hormone-rel 43.8 17 0.00058 17.5 2.0 12 97-108 5-16 (24)
52 1gl2_A Endobrevin; membrane pr 42.9 49 0.0017 19.3 7.3 46 46-91 17-62 (65)
53 1spf_A Pulmonary surfactant-as 40.7 39 0.0013 17.5 3.9 18 109-126 11-28 (35)
54 3b5n_C Protein transport prote 40.7 59 0.002 19.6 9.1 56 45-100 12-67 (70)
55 1sfc_B Protein (syntaxin 1A), 40.6 62 0.0021 19.8 8.6 43 45-87 21-63 (83)
56 2klu_A T-cell surface glycopro 39.9 21 0.00072 21.6 2.4 19 112-130 12-30 (70)
57 3t97_C Nuclear pore glycoprote 39.8 55 0.0019 19.4 4.3 22 68-89 7-28 (64)
58 2kmf_A Photosystem II 11 kDa p 38.9 30 0.001 23.1 3.3 56 3-60 52-110 (115)
59 1pi7_A VPU protein, U ORF prot 38.7 35 0.0012 18.0 3.0 16 112-127 7-22 (36)
60 2jp3_A FXYD domain-containing 38.5 23 0.00079 21.4 2.4 6 106-111 15-20 (67)
61 1qu7_A Methyl-accepting chemot 36.7 1.2E+02 0.0041 22.0 7.1 43 50-92 180-222 (227)
62 1n7s_C SNAP-25A; neuronal snar 36.4 73 0.0025 19.5 8.4 48 43-90 21-68 (79)
63 3ghg_A Fibrinogen alpha chain; 34.0 1.7E+02 0.0058 24.6 7.7 27 29-57 50-76 (562)
64 1l4a_C S-SNAP25 fusion protein 32.2 92 0.0032 19.3 9.1 47 44-90 26-72 (83)
65 2oxj_A Hybrid alpha/beta pepti 31.0 60 0.0021 16.8 3.9 11 77-87 5-15 (34)
66 1dn1_B Syntaxin 1A, syntaxin b 30.7 35 0.0012 25.6 3.0 42 45-86 200-241 (267)
67 2pjw_V Vacuolar protein sortin 29.7 80 0.0027 20.0 4.1 42 44-85 32-73 (91)
68 3vmt_A Monofunctional glycosyl 29.1 25 0.00086 26.8 1.9 25 98-122 26-50 (263)
69 1deb_A APC protein, adenomatou 27.0 92 0.0032 17.7 7.1 21 72-92 30-50 (54)
70 2yko_A LINE-1 ORF1P; RNA-bindi 26.0 1.8E+02 0.0063 21.6 6.1 37 45-81 13-49 (233)
71 2akf_A Coronin-1A; coiled coil 25.1 74 0.0025 16.0 2.9 8 69-76 19-26 (32)
72 3ghg_A Fibrinogen alpha chain; 24.4 3.1E+02 0.01 23.1 7.6 14 24-37 60-73 (562)
73 1pd7_B MAD1; PAH2, SIN3, eukar 23.5 71 0.0024 15.5 2.3 20 64-83 4-23 (26)
74 4av3_A K(+)-stimulated pyropho 22.0 1.9E+02 0.0066 25.2 6.3 34 83-120 42-75 (735)
75 1iij_A ERBB-2 receptor protein 21.8 94 0.0032 16.2 2.8 15 111-125 8-22 (35)
76 2ww9_C Protein transport prote 21.2 63 0.0021 20.5 2.3 25 109-133 60-84 (87)
77 3nmd_A CGMP dependent protein 20.8 1.5E+02 0.0052 18.0 5.9 41 54-94 21-61 (72)
No 1
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=100.00 E-value=5.4e-33 Score=185.59 Aligned_cols=87 Identities=29% Similarity=0.592 Sum_probs=85.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVL 123 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ 123 (137)
.|++.+++++|+||+++|.+||+++|+|||+||+|++||++|+++|..|+++|++++|+|||+|+|++++++++++++++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 032590 124 IIWLSVC 130 (137)
Q Consensus 124 ii~~~~c 130 (137)
+|++++|
T Consensus 84 ii~~~~~ 90 (91)
T 3hd7_A 84 IIIVYFS 90 (91)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 9999998
No 2
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.96 E-value=7.3e-32 Score=187.97 Aligned_cols=87 Identities=29% Similarity=0.571 Sum_probs=85.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVL 123 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ 123 (137)
.|++.+++++|+||+++|.+||+++|+|||+||+|++||++|+++|..|+++|++++|+|||+|+|++++++++++++++
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii~ 111 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 111 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 032590 124 IIWLSVC 130 (137)
Q Consensus 124 ii~~~~c 130 (137)
+|++++|
T Consensus 112 iIi~~~c 118 (119)
T 2kog_A 112 IIIVYFS 118 (119)
T ss_dssp HHHHHHH
T ss_pred Hhhhhee
Confidence 9999999
No 3
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=99.95 E-value=4.4e-32 Score=202.54 Aligned_cols=107 Identities=34% Similarity=0.615 Sum_probs=70.2
Q ss_pred ChhhhHhhhCCCCCccccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHH
Q 032590 1 MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLAD 80 (137)
Q Consensus 1 i~~~F~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~ 80 (137)
|+++|..+| +..+.++.||+++.+|++.|+++|++|++ |.+.|++.+++++|+||++||.+||+++|+|||+||.|++
T Consensus 83 i~~eF~~~~-~~~~~~~~~~~~~~~f~~~l~~~~~~y~d-~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ 160 (189)
T 4b93_A 83 VKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSE-NKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLID 160 (189)
T ss_dssp HHHHHHHHH-GGGGGTCCTTTTHHHHHHHHHHHHHHHHC-C-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCCEE
T ss_pred HHHHHHhhc-cccccccCCccccchhhHHHHHHHHhhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 468999999 66777899999999999999999999964 5556999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 032590 81 KTENLREQAQAYKKAGTQIRRKMWYQNMK 109 (137)
Q Consensus 81 kt~~L~~~a~~F~~~a~~l~r~~~wkn~k 109 (137)
||++|+++|..|+++|++|+|+|||+|+|
T Consensus 161 ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 161 KTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp TTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987
No 4
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=99.94 E-value=3.9e-29 Score=187.22 Aligned_cols=104 Identities=22% Similarity=0.441 Sum_probs=41.5
Q ss_pred ChhhhHhhhCCCCCc-cccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHH
Q 032590 1 MRADFKKRYGGGKAD-TAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLA 79 (137)
Q Consensus 1 i~~~F~~~~~~~~~~-~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~ 79 (137)
|+++|..+|+ ..+. .+.||+| .+|++.|+++|++|+ +|.+.|++.+++++|+||++||.+||+++|+|||+|+.|+
T Consensus 92 i~~~F~~~~~-~~~~~~~~~~~~-~~f~~~l~~~~~~y~-~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~Rge~l~~L~ 168 (196)
T 2nut_C 92 LHSEFDEQHG-KKVPTVSRPYSF-IEFDTFIQKTKKLYI-DSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALD 168 (196)
T ss_dssp HHHHHHHHHT-TTTTTCCSTTTT-GGGHHHHHHHHTTTS-CCC-----------------CCEEEHHHHC----------
T ss_pred HHHHHHHhcc-chhccccCCCch-HHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 4689999995 4553 4689999 599999999999995 5666699999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032590 80 DKTENLREQAQAYKKAGTQIRRKMWYQN 107 (137)
Q Consensus 80 ~kt~~L~~~a~~F~~~a~~l~r~~~wkn 107 (137)
+||++|+++|..|+++|++++|+|||++
T Consensus 169 ~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 169 SKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999985
No 5
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.93 E-value=9.1e-27 Score=149.90 Aligned_cols=72 Identities=40% Similarity=0.705 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 032590 40 HAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIK 111 (137)
Q Consensus 40 ~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~ 111 (137)
+|.+.|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++++|+|||+|+|++
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 455569999999999999999999999999999999999999999999999999999999999999999974
No 6
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.92 E-value=3.8e-25 Score=148.76 Aligned_cols=68 Identities=31% Similarity=0.638 Sum_probs=64.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIK 111 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~ 111 (137)
.|++.+++.+|+||++||.+||+++|+|||+|+.|++||++|+++|..|+++|++++++|||+|+|++
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 49999999999999999999999999999999999999999999999999999999999999999975
No 7
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.91 E-value=3.7e-26 Score=149.08 Aligned_cols=70 Identities=31% Similarity=0.629 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 032590 41 AEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKI 110 (137)
Q Consensus 41 ~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~ 110 (137)
|.+.|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|+++|..|+++|++++++|||+|+|+
T Consensus 11 ~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 11 VQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345899999999999999999999999999999999999999999999999999999999999999985
No 8
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.87 E-value=1.8e-22 Score=126.02 Aligned_cols=61 Identities=31% Similarity=0.621 Sum_probs=59.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW 104 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~ 104 (137)
.|++.+++.+|++|++||.+||+++|+|||+|+.|+++|+.|+++|..|+++|++++|+||
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3899999999999999999999999999999999999999999999999999999999998
No 9
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.87 E-value=2.9e-22 Score=124.33 Aligned_cols=60 Identities=32% Similarity=0.700 Sum_probs=59.2
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW 104 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~ 104 (137)
|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++|+|+||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999999999999999999998
No 10
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.83 E-value=3.8e-23 Score=155.32 Aligned_cols=95 Identities=21% Similarity=0.370 Sum_probs=82.3
Q ss_pred ChhhhHhhhCCCCCccc--cccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHH
Q 032590 1 MRADFKKRYGGGKADTA--IAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNL 78 (137)
Q Consensus 1 i~~~F~~~~~~~~~~~~--~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L 78 (137)
|+++|..+|++..+.++ .|| +| +.|+++|++|+ +|.+.|++.+++++|+||++||.+||+++|+|||+||+|
T Consensus 98 i~~eF~~~~~~~~~~~~~~~~~----~f-~~l~~~m~~Y~-dp~~~d~l~~~q~el~evk~iM~~NI~~vl~RgekLd~L 171 (199)
T 3kyq_A 98 VLDEFSKQVDRIDWPVGSPATI----HY-TALDGHLSRYQ-NPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDL 171 (199)
T ss_dssp HHHHHHHHSCGGGSTTCCTTTC----CC-CTHHHHHHHTT-SGGGCCCCHHHHHHHHTCCCEEESSGGGTSCTTCCHHHH
T ss_pred HHHHHHHhccchhhhccccccc----cc-HHHHHHHHHhC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 46899999965555433 444 46 67889998895 577779999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHH
Q 032590 79 ADKTENLREQAQAYKKAGTQIRR 101 (137)
Q Consensus 79 ~~kt~~L~~~a~~F~~~a~~l~r 101 (137)
++||++|+++|..|+++|+++++
T Consensus 172 ~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 172 VSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999985
No 11
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.83 E-value=1.1e-20 Score=118.49 Aligned_cols=62 Identities=27% Similarity=0.566 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHH
Q 032590 40 HAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRR 101 (137)
Q Consensus 40 ~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r 101 (137)
+|.+.|++.+++.+|+||+.||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++|+|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45556999999999999999999999999999999999999999999999999999999986
No 12
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.76 E-value=2e-18 Score=107.44 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=55.8
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKM 103 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~ 103 (137)
+++..++.++++|+++|.+|+++++||||+|+.|++||++|.++|..|.+.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999875
No 13
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.34 E-value=3e-07 Score=72.85 Aligned_cols=54 Identities=24% Similarity=0.480 Sum_probs=33.8
Q ss_pred hhhhhhHHHHHHHHHHhh----------Ch----HHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhH
Q 032590 22 LNKEFGPIMKEHMKYIID----------HA----EEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENI 75 (137)
Q Consensus 22 ~~~~F~~~l~~~~~~~~~----------~~----~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L 75 (137)
+...|.....++.++|.. -| ...+.+.++++|++||++||.+||+++|+|||+|
T Consensus 243 iykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 243 IYKKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 345666666666666521 01 2258999999999999999999999999999986
No 14
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.21 E-value=1.1e-09 Score=61.18 Aligned_cols=29 Identities=41% Similarity=0.557 Sum_probs=27.8
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhh
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGE 73 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge 73 (137)
+++.+++.+|+||++||.+||+++|+||+
T Consensus 9 d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 9 RRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 78999999999999999999999999996
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.56 E-value=0.0048 Score=41.47 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=37.2
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLRE 87 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~ 87 (137)
+.+.++...+.|+.+++.+=-..+.+.|+-++.++...++-.+
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~ 63 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6788999999999999998888899999999999887766554
No 16
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.29 E-value=0.11 Score=33.62 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=50.5
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI 124 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~i 124 (137)
+.+++++.-+.+.-+-+.++-+++=+=.++-++|...|.....+|...++..-.-+-|+| -+.+++++++++++++
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~----iii~~iv~~il~ii~~ 87 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM----IILGVICAIILIIIIV 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777888888888999999999888765544333332 3344444444444433
No 17
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=91.79 E-value=0.081 Score=36.03 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=47.0
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW 104 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~ 104 (137)
+.+++++..+.+.-+-+.+.=+++=+-.++-++|.+.|.....+|...++..-.-+-++|
T Consensus 40 ~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 99 (119)
T 2kog_A 40 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777888889999999999999998876655554444
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=90.07 E-value=2.8 Score=27.60 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=3.9
Q ss_pred HHHHHHhH
Q 032590 58 KSIMLENI 65 (137)
Q Consensus 58 ~~im~~Ni 65 (137)
++-|.++|
T Consensus 47 Qge~Id~I 54 (109)
T 3hd7_B 47 QGEMIDRI 54 (109)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 44455554
No 19
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=89.41 E-value=0.062 Score=38.69 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=19.2
Q ss_pred CCCCccccccchhhhhhHHHHHHHHHHhhC
Q 032590 11 GGKADTAIAKSLNKEFGPIMKEHMKYIIDH 40 (137)
Q Consensus 11 ~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~ 40 (137)
+..+.++.||+|+.+|++.|++.|++|+++
T Consensus 134 ~~~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 134 GSRAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp TTGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred hhhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 345667789999889999999999999654
No 20
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=84.10 E-value=1.3 Score=27.62 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=32.5
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 74 NIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIW 126 (137)
Q Consensus 74 ~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~ 126 (137)
+++.+.+...++-.++..|-+.|++=-|+-+.+-.+...+..+++-++.|+|-
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667777888888888888888888888877666555555444443
No 21
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=81.18 E-value=2.1 Score=26.98 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=31.6
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 78 LADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLII 125 (137)
Q Consensus 78 L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii 125 (137)
+.+...++-.++..|-+.+++=-|+-+++-.+...+..+++-++.|+|
T Consensus 21 ~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 21 LVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566667777777777778888888887776655555555553
No 22
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=80.49 E-value=7.7 Score=23.70 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=36.8
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLRE 87 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~ 87 (137)
+.+.++...+.|+.+++.+=-..+.+.|+-|+.++...+....
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999988777665553
No 23
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=80.48 E-value=7.1 Score=23.28 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=40.9
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKK 94 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~ 94 (137)
..+..+...+.+..+-+.+.-+++-+-.++-++|.+.|+....+|...++
T Consensus 11 ~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 11 GAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777888888888888888889999999999998887765
No 24
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=76.82 E-value=9 Score=22.47 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=26.8
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYK 93 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~ 93 (137)
+.+..++..+.+.-+-+.+.-+++=+-.++-+.|...|......|....
T Consensus 11 ~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~ 59 (63)
T 1n7s_A 11 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLK 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555556666666666665544
No 25
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=76.82 E-value=13 Score=24.18 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQA 91 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~ 91 (137)
.-..++..+|++++.-|.+-|+.+-..=..||.+..++..|.+.|.-
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~ 82 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQ 82 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34577888999999999999888877777776666655555544443
No 26
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=74.12 E-value=3.6 Score=23.98 Aligned_cols=19 Identities=26% Similarity=0.474 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhcCCc
Q 032590 116 GILLILVLIIWLSVCHGFD 134 (137)
Q Consensus 116 ~vv~~~~~ii~~~~c~g~~ 134 (137)
+++++.+++..++-||-|+
T Consensus 22 GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 22 GLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCccc
Confidence 3334444555577887663
No 27
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=73.60 E-value=6.9 Score=21.55 Aligned_cols=19 Identities=26% Similarity=0.474 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhcCCc
Q 032590 116 GILLILVLIIWLSVCHGFD 134 (137)
Q Consensus 116 ~vv~~~~~ii~~~~c~g~~ 134 (137)
+++++.+++..+.-||-|+
T Consensus 20 GLllL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 20 GLLLLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHcCccc
Confidence 3334444445567887664
No 28
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=72.89 E-value=12 Score=21.88 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=25.9
Q ss_pred HHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH
Q 032590 46 KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKK 94 (137)
Q Consensus 46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~ 94 (137)
.++.++.-+.+.-+-+.+.-+++=.-.++-++|...|......|...++
T Consensus 10 ~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r 58 (61)
T 3b5n_A 10 EIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555666666666666655543
No 29
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=72.62 E-value=1.2 Score=27.32 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=34.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 75 IQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLII 125 (137)
Q Consensus 75 L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii 125 (137)
++.+.+...++-.++..|-+.+++=-|+-+++-.+...+..+++-++.|+|
T Consensus 4 ~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~I 54 (68)
T 2wwb_B 4 VMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFV 54 (68)
T ss_dssp SSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677778888888888888888888887666555555544543
No 30
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=72.52 E-value=16 Score=23.40 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHh
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAG 96 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a 96 (137)
+.++.++..+.+.-+-+.+.-+++=+-.++-+.|...|......|...++..
T Consensus 37 ~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 37 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566666666666666666666777776666665544
No 31
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=72.43 E-value=4.3 Score=23.67 Aligned_cols=18 Identities=39% Similarity=0.561 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 032590 116 GILLILVLIIWLSVCHGF 133 (137)
Q Consensus 116 ~vv~~~~~ii~~~~c~g~ 133 (137)
+++++.+++..++-||-|
T Consensus 19 GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 19 GLLLLMLLILALWKIGFF 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcc
Confidence 333444445557788766
No 32
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=66.24 E-value=7.8 Score=23.46 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=31.9
Q ss_pred HHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHh
Q 032590 30 MKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDR 71 (137)
Q Consensus 30 l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~R 71 (137)
....++.|+.+|...+...++++=++....-=..|+.+++++
T Consensus 21 Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 21 YETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445556777788878888999988887777777788777765
No 33
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=64.07 E-value=20 Score=21.21 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=38.1
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQ 88 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~ 88 (137)
+.+.++...+.++..++.+=-..+.+.|+-|+.++...+.-...
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 55 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 55 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998877665543
No 34
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=63.52 E-value=9 Score=23.67 Aligned_cols=42 Identities=14% Similarity=0.066 Sum_probs=31.6
Q ss_pred HHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHh
Q 032590 30 MKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDR 71 (137)
Q Consensus 30 l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~R 71 (137)
....++.|+.+|...+...++++=++....--..|+.+++++
T Consensus 23 Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 23 YEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444556677778777888889888887777777888777764
No 35
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=63.46 E-value=20 Score=21.05 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=38.5
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQA 89 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a 89 (137)
..+.++...+.++..++.+=-..+.+.|+-|+.++...+......
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 53 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999988777665433
No 36
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=61.01 E-value=6.7 Score=23.33 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=30.0
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 78 LADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIW 126 (137)
Q Consensus 78 L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~ 126 (137)
+.+...+.-.++..|-+.+++=.|+-+.+-.|...+..+++-++.|+|-
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777778777777788877777665555544444443
No 37
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=60.55 E-value=24 Score=21.01 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=37.4
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLRE 87 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~ 87 (137)
+.+.++...+.|+..++.+=-..+.+.|+-|+.++...+....
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 48 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEV 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6788999999999999999989999999999999887766654
No 38
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=59.18 E-value=27 Score=21.08 Aligned_cols=53 Identities=9% Similarity=0.166 Sum_probs=35.7
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGT 97 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~ 97 (137)
+.+..++.-+.+.-+-+.+.-+++=.-.++-++|...|......|...++..-
T Consensus 15 ~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~w 67 (74)
T 2nps_A 15 NQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 67 (74)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666666677777888888888888888776543
No 39
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=58.37 E-value=26 Score=20.74 Aligned_cols=44 Identities=14% Similarity=0.361 Sum_probs=38.4
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQ 88 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~ 88 (137)
+.+.++...+.++..++.+=-..+.+.|+-|+.++...+.....
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLD 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998877766543
No 40
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=56.91 E-value=18 Score=22.29 Aligned_cols=31 Identities=13% Similarity=0.359 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccC
Q 032590 105 YQNMKIKLVVLGILLILVLIIWLSVCHGFDCT 136 (137)
Q Consensus 105 wkn~k~~iii~~vv~~~~~ii~~~~c~g~~C~ 136 (137)
|...++..++.++| +++..|++..+|..+|.
T Consensus 16 Y~tLRigGLifA~v-Lfi~GI~iilS~kcrCk 46 (74)
T 2zxe_G 16 YYRLRVVGLIVAAV-LCVIGIIILLAGKCRCK 46 (74)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHTTTC----
T ss_pred hHHheeccchhHHH-HHHHHHHHHHcCccccC
Confidence 34444443333322 23333434444544664
No 41
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=56.27 E-value=25 Score=19.91 Aligned_cols=41 Identities=7% Similarity=0.207 Sum_probs=31.7
Q ss_pred HHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHH
Q 032590 50 VKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQ 90 (137)
Q Consensus 50 ~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~ 90 (137)
...-+.++.++-.+.+..+-+.||.|+...+.-++......
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~ 45 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMR 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHH
Confidence 34456788888889999999999999888877777665443
No 42
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=50.98 E-value=12 Score=18.71 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=14.5
Q ss_pred HHHHhHhHHHHHHHHhHHHHHHhhhhHH
Q 032590 49 KVKAQVSEVKSIMLENIDKAVDRGENIQ 76 (137)
Q Consensus 49 ~~~~~v~~v~~im~~Ni~~il~Rge~L~ 76 (137)
.++.++..++ .++|.+|+|-|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 3445555443 57788887776653
No 43
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=49.62 E-value=21 Score=21.93 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=39.2
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHh
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAG 96 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a 96 (137)
+.++.++..+.+.-+-+.+.-+++=+-.++-+.|...|......|...++..
T Consensus 22 ~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ 73 (80)
T 1l4a_A 22 AQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666667777777777777788888888999999888876654
No 44
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=48.36 E-value=43 Score=22.24 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=35.6
Q ss_pred hhhHhhhCCCCCccccccchhhhhhHHHHHHHHHHhhCh---HHHHHHHHHHHhHhHHHHH
Q 032590 3 ADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHA---EEIEKLIKVKAQVSEVKSI 60 (137)
Q Consensus 3 ~~F~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~~---~~~d~l~~~~~~v~~v~~i 60 (137)
++|...|++.. ..+..-|| ..+...|-.+-.||+..+ -..+...++.+|++++...
T Consensus 48 nd~vsrYRr~~-~v~g~~Sf-ttm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE~a 106 (113)
T 2y6x_A 48 NDFFALYRRDD-SLRSLSSF-MTMQTALNSLAGHYSSYPNRPLPEKLKARLEQEFKQVELA 106 (113)
T ss_dssp HHHHHHHTTCH-HHHTSHHH-HHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57888995442 23444456 577788888888887543 2235667777777665443
No 45
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=48.23 E-value=21 Score=17.43 Aligned_cols=16 Identities=19% Similarity=0.717 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 032590 112 LVVLGILLILVLIIWL 127 (137)
Q Consensus 112 iii~~vv~~~~~ii~~ 127 (137)
+|++.++..+++.+|+
T Consensus 10 LIviav~aaVllylW~ 25 (26)
T 3j1r_A 10 LILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444554543
No 46
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=47.49 E-value=26 Score=21.88 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 032590 71 RGENIQNLADKTENLREQAQAYKKAGTQIRRK---MWYQNMKIKLVVLGILLIL 121 (137)
Q Consensus 71 Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~---~~wkn~k~~iii~~vv~~~ 121 (137)
.|++.+...+.-+++.+...+|.+.++++=++ -=|+-|...+-+.++.+++
T Consensus 7 k~~~~~~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~i 60 (80)
T 2ww9_B 7 KGEEKKQSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIA 60 (80)
T ss_dssp --------------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34444555555566667777777777665443 2355555555554444443
No 47
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=47.34 E-value=13 Score=23.83 Aligned_cols=42 Identities=14% Similarity=0.066 Sum_probs=31.1
Q ss_pred HHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHh
Q 032590 30 MKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDR 71 (137)
Q Consensus 30 l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~R 71 (137)
.+..++.|+.+|...+...++|+=+++....=+.|+.++++.
T Consensus 42 Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 42 YEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444556787778777888899988887777777777777654
No 48
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=47.27 E-value=20 Score=21.89 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=18.9
Q ss_pred HhHhHHHHHHHHhHHHHHHhhh
Q 032590 52 AQVSEVKSIMLENIDKAVDRGE 73 (137)
Q Consensus 52 ~~v~~v~~im~~Ni~~il~Rge 73 (137)
++++++++|+..|+.++-+|.-
T Consensus 7 ~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 7 DKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 5689999999999999988853
No 49
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=46.92 E-value=38 Score=23.76 Aligned_cols=43 Identities=16% Similarity=0.026 Sum_probs=30.6
Q ss_pred HHHHHHHHhhChHHHHHHHHHHHhHh-HHHHHHHHhHHHHHHhh
Q 032590 30 MKEHMKYIIDHAEEIEKLIKVKAQVS-EVKSIMLENIDKAVDRG 72 (137)
Q Consensus 30 l~~~~~~~~~~~~~~d~l~~~~~~v~-~v~~im~~Ni~~il~Rg 72 (137)
....++.|+.+|...+...++++=++ ....-=..|+.+++++-
T Consensus 22 Yk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLekI 65 (153)
T 1zkr_A 22 YVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDKI 65 (153)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 44556778788887788888888888 66566666776666553
No 50
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=45.62 E-value=4.4 Score=27.10 Aligned_cols=23 Identities=26% Similarity=0.704 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032590 105 YQNMKIKLVVLGILLILVLIIWL 127 (137)
Q Consensus 105 wkn~k~~iii~~vv~~~~~ii~~ 127 (137)
++.+.+.++++++++++++++|+
T Consensus 102 ~~~~~~~~i~~~~~i~i~~~~~~ 124 (130)
T 3fym_A 102 SKEPIQLLVIMGITVLITLLLWI 124 (130)
T ss_dssp -----------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555543
No 51
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=43.76 E-value=17 Score=17.51 Aligned_cols=12 Identities=17% Similarity=0.728 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHH
Q 032590 97 TQIRRKMWYQNM 108 (137)
Q Consensus 97 ~~l~r~~~wkn~ 108 (137)
..++|.||..+.
T Consensus 5 Q~~rRr~wL~~l 16 (24)
T 3h3g_B 5 QDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468899999875
No 52
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=42.89 E-value=49 Score=19.33 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=21.7
Q ss_pred HHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHH
Q 032590 46 KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQA 91 (137)
Q Consensus 46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~ 91 (137)
.+..++.-+.+.-+-+.+.-+++=.-.++-+.|...|......|..
T Consensus 17 ~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~ 62 (65)
T 1gl2_A 17 EVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQK 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444555555555555555543
No 53
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=40.71 E-value=39 Score=17.49 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032590 109 KIKLVVLGILLILVLIIW 126 (137)
Q Consensus 109 k~~iii~~vv~~~~~ii~ 126 (137)
|-.+|+..++++++.+|.
T Consensus 11 KrLlivVvVvVlvVvViv 28 (35)
T 1spf_A 11 KRLLVVVVVVVLVVVVIV 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred heEEEEEeeehhhHHHHH
Confidence 334445444444444443
No 54
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=40.70 E-value=59 Score=19.56 Aligned_cols=56 Identities=5% Similarity=0.127 Sum_probs=43.8
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIR 100 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~ 100 (137)
+.....-.-.++...+=...+..+-+.||+|+..+..-+.+..+.+.=.+..+.|+
T Consensus 12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555667777788889999999999999999998888888777666666665
No 55
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=40.58 E-value=62 Score=19.79 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=37.4
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLRE 87 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~ 87 (137)
..+.++...+.++..++.+=-..+.+.|+-|+.++...+....
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 63 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999998877766554
No 56
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=39.86 E-value=21 Score=21.63 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032590 112 LVVLGILLILVLIIWLSVC 130 (137)
Q Consensus 112 iii~~vv~~~~~ii~~~~c 130 (137)
+++++++.++++.-+..+|
T Consensus 12 ivlGg~~~lll~~glcI~c 30 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFF 30 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 4566655555544444443
No 57
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=39.79 E-value=55 Score=19.42 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=11.4
Q ss_pred HHHhhhhHHHHHHHhHHHHHHH
Q 032590 68 AVDRGENIQNLADKTENLREQA 89 (137)
Q Consensus 68 il~Rge~L~~L~~kt~~L~~~a 89 (137)
++++|++|..|...+......-
T Consensus 7 LveNgekI~~L~~~v~~~e~~Q 28 (64)
T 3t97_C 7 LIENGEKITSLHREVEKVKLDQ 28 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544433
No 58
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=38.92 E-value=30 Score=23.10 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=34.9
Q ss_pred hhhHhhhCCCCCccccccchhhhhhHHHHHHHHHHhhC---hHHHHHHHHHHHhHhHHHHH
Q 032590 3 ADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDH---AEEIEKLIKVKAQVSEVKSI 60 (137)
Q Consensus 3 ~~F~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~---~~~~d~l~~~~~~v~~v~~i 60 (137)
++|...|++.. ..+..-|| ..+...|-.+-.||+.. |--.+...++.+|++++...
T Consensus 52 nd~vsrYRr~~-~v~g~~Sf-~tm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE~a 110 (115)
T 2kmf_A 52 NDYISRYRRKG-DAGGLKSF-TTMQTALNSLAGYYTSYGARPIPEKLKKRLQLEFTQAERS 110 (115)
T ss_dssp HHHHHHTHHHH-CSSSCHHH-HHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56888885332 23344455 56777888888888643 32236677788887766544
No 59
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=38.68 E-value=35 Score=17.99 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 032590 112 LVVLGILLILVLIIWL 127 (137)
Q Consensus 112 iii~~vv~~~~~ii~~ 127 (137)
.++++++.+++.++++
T Consensus 7 ~ivalivalIiaIVVW 22 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVW 22 (36)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445545444444433
No 60
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=38.48 E-value=23 Score=21.39 Aligned_cols=6 Identities=0% Similarity=0.479 Sum_probs=2.3
Q ss_pred HHHHHH
Q 032590 106 QNMKIK 111 (137)
Q Consensus 106 kn~k~~ 111 (137)
...++.
T Consensus 15 ~tLRig 20 (67)
T 2jp3_A 15 ESLQLG 20 (67)
T ss_dssp HHHHHH
T ss_pred HHheec
Confidence 334433
No 61
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=36.69 E-value=1.2e+02 Score=22.00 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=16.7
Q ss_pred HHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHH
Q 032590 50 VKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAY 92 (137)
Q Consensus 50 ~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F 92 (137)
+...++++..+..++...+-+-....+.|.+.++.|......|
T Consensus 180 i~~~i~~i~~~~~~~~~~~~~~~~~~~~L~~~a~~L~~~v~~F 222 (227)
T 1qu7_A 180 VGLAVAEMDRVTQQNAALVEQSAAAAAALEEQASRLTEAVAVF 222 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444443333333333333444444444444433
No 62
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=36.42 E-value=73 Score=19.45 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHH
Q 032590 43 EIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQ 90 (137)
Q Consensus 43 ~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~ 90 (137)
..+.+.....-+.++..+-.+.+..+-..||.|+...+..+.......
T Consensus 21 s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~ 68 (79)
T 1n7s_C 21 SLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMK 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHH
Confidence 357788888889999999999999999999999988887777766544
No 63
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.03 E-value=1.7e+02 Score=24.63 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHhHhHH
Q 032590 29 IMKEHMKYIIDHAEEIEKLIKVKAQVSEV 57 (137)
Q Consensus 29 ~l~~~~~~~~~~~~~~d~l~~~~~~v~~v 57 (137)
.|+.+|...+.+ -...|.+++++++++
T Consensus 50 rLQglLdkqErD--ltkrINELKnqLEdl 76 (562)
T 3ghg_A 50 RMKGLIDEVNQD--FTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHTHH
T ss_pred chhhhHHhhcCc--HHHHHHHHHHHHHHH
Confidence 455555443222 124556666555555
No 64
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=32.17 E-value=92 Score=19.33 Aligned_cols=47 Identities=11% Similarity=0.256 Sum_probs=40.4
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQ 90 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~ 90 (137)
.+.......-+++.+.+....+..+...||+|+..+...+.+.....
T Consensus 26 l~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~ 72 (83)
T 1l4a_C 26 LESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMK 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888999999999999999999999999988888876544
No 65
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.00 E-value=60 Score=16.84 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=4.3
Q ss_pred HHHHHhHHHHH
Q 032590 77 NLADKTENLRE 87 (137)
Q Consensus 77 ~L~~kt~~L~~ 87 (137)
.|++|-++|-.
T Consensus 5 QLE~kVEeLl~ 15 (34)
T 2oxj_A 5 QLEXKVXELLX 15 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 66
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=30.70 E-value=35 Score=25.58 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=34.7
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLR 86 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~ 86 (137)
..+.++...+.++..++.+=-..|.+.|+-|+.++...+...
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~ 241 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 241 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 567888888899999988888888899999999888776543
No 67
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=29.67 E-value=80 Score=20.04 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHH
Q 032590 44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENL 85 (137)
Q Consensus 44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L 85 (137)
..++..+-..+..++--|..++++-.++-+.|-++.+|-...
T Consensus 32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a 73 (91)
T 2pjw_V 32 DSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEI 73 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888899999999999998888887777776665443
No 68
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=29.12 E-value=25 Score=26.81 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 98 QIRRKMWYQNMKIKLVVLGILLILV 122 (137)
Q Consensus 98 ~l~r~~~wkn~k~~iii~~vv~~~~ 122 (137)
+-.+|.|+++.-.++++++++++++
T Consensus 26 ~~~kk~~~~~~~~~~~~~~l~~~~~ 50 (263)
T 3vmt_A 26 KPPKKKKSKRILLKILLTILIIIAL 50 (263)
T ss_dssp ---------CCTTHHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHH
Confidence 4455666666655555544444433
No 69
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.96 E-value=92 Score=17.68 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=13.1
Q ss_pred hhhHHHHHHHhHHHHHHHHHH
Q 032590 72 GENIQNLADKTENLREQAQAY 92 (137)
Q Consensus 72 ge~L~~L~~kt~~L~~~a~~F 92 (137)
...|+.|+..|.+|.+-.+..
T Consensus 30 S~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 30 SNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHH
Confidence 456677777777776655443
No 70
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=26.02 E-value=1.8e+02 Score=21.62 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=21.7
Q ss_pred HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHH
Q 032590 45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADK 81 (137)
Q Consensus 45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~k 81 (137)
..++.+...++++.......-..+-...++|.+|.+.
T Consensus 13 ErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 13 ERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666655555555555555566666554
No 71
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.11 E-value=74 Score=15.97 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=3.2
Q ss_pred HHhhhhHH
Q 032590 69 VDRGENIQ 76 (137)
Q Consensus 69 l~Rge~L~ 76 (137)
-+|-++|+
T Consensus 19 q~r~drle 26 (32)
T 2akf_A 19 QERLDRLE 26 (32)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 72
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.42 E-value=3.1e+02 Score=23.10 Aligned_cols=14 Identities=7% Similarity=0.233 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHHH
Q 032590 24 KEFGPIMKEHMKYI 37 (137)
Q Consensus 24 ~~F~~~l~~~~~~~ 37 (137)
.+|...|.++...|
T Consensus 60 rDltkrINELKnqL 73 (562)
T 3ghg_A 60 QDFTNRINKLKNSL 73 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 46666666666555
No 73
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=23.50 E-value=71 Score=15.54 Aligned_cols=20 Identities=15% Similarity=0.327 Sum_probs=14.1
Q ss_pred hHHHHHHhhhhHHHHHHHhH
Q 032590 64 NIDKAVDRGENIQNLADKTE 83 (137)
Q Consensus 64 Ni~~il~Rge~L~~L~~kt~ 83 (137)
||+.+|+--+-|+..+.+++
T Consensus 4 nvq~LLeAAeyLErrEre~E 23 (26)
T 1pd7_B 4 NIQMLLEAADYLERREREAE 23 (26)
T ss_dssp STHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 77777877777776666544
No 74
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=22.01 E-value=1.9e+02 Score=25.21 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590 83 ENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120 (137)
Q Consensus 83 ~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~ 120 (137)
++|++-|..-+..|.. ..-|.||...++++++.+
T Consensus 42 ~~M~eIa~~I~eGA~a----fL~rqyk~i~~~~vv~~~ 75 (735)
T 4av3_A 42 ERMKEISSYIRSGADS----FLAHETKAIFKVAIVIAI 75 (735)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4444444444444332 222456665555444433
No 75
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.78 E-value=94 Score=16.21 Aligned_cols=15 Identities=13% Similarity=0.538 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 032590 111 KLVVLGILLILVLII 125 (137)
Q Consensus 111 ~iii~~vv~~~~~ii 125 (137)
..|+++++.+++++|
T Consensus 8 ~sIaagVvglll~vi 22 (35)
T 1iij_A 8 TFIIATVVGVLLFLI 22 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cEeHHHHHHHHHHHH
Confidence 344555554333333
No 76
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=21.20 E-value=63 Score=20.47 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC
Q 032590 109 KIKLVVLGILLILVLIIWLSVCHGF 133 (137)
Q Consensus 109 k~~iii~~vv~~~~~ii~~~~c~g~ 133 (137)
.+..++++.++++.+++++.+.|.+
T Consensus 60 ~P~~VLv~sl~FIa~VilLHI~gK~ 84 (87)
T 2ww9_C 60 DSLVVLFLSVGFIFSVIALHLLTKF 84 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHC------
T ss_pred cCeeehhhHHHHHHHHHHHHHhhhh
Confidence 4566666666666666666665543
No 77
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.84 E-value=1.5e+02 Score=17.97 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=25.2
Q ss_pred HhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH
Q 032590 54 VSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKK 94 (137)
Q Consensus 54 v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~ 94 (137)
+.+.+.....-.+++-++.+.|+.|+..-.+....-..++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666667777776666666665555544443
Done!