BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032591
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 209 bits (531), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 96/103 (93%), Positives = 102/103 (99%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
GTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI
Sbjct: 50 GGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 137
QSLLCDPNPNSPANSEAARM+SE+KREYNRRVR++VEQSWTAD
Sbjct: 110 QSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTAD 152
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 101/118 (85%), Gaps = 1/118 (0%)
Query: 17 ILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDI 76
ILT+ + I G GTFKL+L+FTE+YPNKPPTV+F+S+MFHPN+YADGSICLDI
Sbjct: 33 ILTWEA-IIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDI 91
Query: 77 LQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 134
LQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+++ EN+REY +RV++IVEQSW
Sbjct: 92 LQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 149
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 78/99 (78%), Positives = 94/99 (94%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 95
GTFKL+L+FTE+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQ
Sbjct: 54 GTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQ 113
Query: 96 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 134
SLL +PNPNSPANS AA+++ EN+REY +RV++IVEQSW
Sbjct: 114 SLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 152
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 173 bits (438), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 76/99 (76%), Positives = 92/99 (92%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 95
GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQ
Sbjct: 51 GTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQ 110
Query: 96 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 134
SLL +PNPNSPANS+AA+++ ENKREY +RV IVEQSW
Sbjct: 111 SLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 153 bits (386), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 84/99 (84%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 95
GTF+L L+F E+YPNKPP V+F+S MFHPN+YA+G ICLDILQN+W+P YDVA+ILTSIQ
Sbjct: 51 GTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQ 110
Query: 96 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 134
SL DPNP SPAN EAA +F ++K +Y +RV+E VE+SW
Sbjct: 111 SLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 52 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 111
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 112 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 149
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 47 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 106
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 107 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 144
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 65 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 124
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 125 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 57 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 116
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 117 CSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQK 154
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 112 bits (279), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QW P ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSI 108
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 112 bits (279), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 57 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 116
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 117 CSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 154
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 112 bits (279), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 146
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 46 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 105
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 106 CSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 143
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 55 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 114
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 115 CSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 152
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 53 GGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 112
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P + A+++ +K +YNR RE ++
Sbjct: 113 CSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 150
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 49 GGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 108
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P + A+++ +K +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 146
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 69/98 (70%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 65 GGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 124
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P + A+++ +K +YNR RE ++
Sbjct: 125 CSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 162
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLD L++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSI 108
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 50 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 109
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ YN+ RE ++
Sbjct: 110 CSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQK 147
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 52 GGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 111
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P + A ++ +K +YNR RE ++
Sbjct: 112 CSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQK 149
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 68/101 (67%), Gaps = 5/101 (4%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI 108
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135
SLLCDPNP+ P E AR++ ++ +YNR RE WT
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE-----WT 144
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 50 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI 109
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 110 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 147
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 46 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSI 105
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 106 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 143
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 65 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSI 124
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 125 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 47 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI 106
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 107 CSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 144
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 68/98 (69%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP + F ++++HPNI ++GSI LDIL++QWSP V+ +L SI
Sbjct: 53 GGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSI 112
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P + A+++ +K +YNR RE ++
Sbjct: 113 CSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 150
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F LT+ F DYP KPP V F +R++HP I ++GSI LDIL++QWSP ++ +L SI
Sbjct: 47 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSI 106
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 107 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 144
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 63/95 (66%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
+ G F L++ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L S
Sbjct: 46 AGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLS 105
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 128
I SLL DPNP+ P E A ++ ++ Y RE
Sbjct: 106 ISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSARE 140
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 102 bits (254), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 65/99 (65%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
S G F L + F DYP KPP V F ++++HPNI + G+ICLDIL++QWSP ++ +L S
Sbjct: 66 SGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLS 125
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
I SLL DPNP+ P E A ++ ++ Y++ RE ++
Sbjct: 126 ISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQK 164
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPI 84
GK G +KLT+ F E+YP +PP RF +FHPN+Y G++CL IL + W P
Sbjct: 53 GKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPA 112
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL DPN SPA +EA MF ++K EY +RVR
Sbjct: 113 ITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 155
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSL 97
+KLTL+F DYP KPP V+F + +HPN+ G+ICLDIL+ W+ YDV IL S+QSL
Sbjct: 58 YKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSL 117
Query: 98 LCDPNPNSPANSEAARMFSENKREYNRRVRE 128
L +PN SP N++AA M+S N+ EY + + E
Sbjct: 118 LGEPNNASPLNAQAADMWS-NQTEYKKVLHE 147
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 65/99 (65%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
+ G F L++ F DYP KPP + F ++++HPNI A+G+ICLDIL++QWSP ++ +L S
Sbjct: 47 AGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLS 106
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
I SLL D NP+ P E A ++ ++ +Y RE ++
Sbjct: 107 ICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKK 145
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAIL 91
+ G + +T+++ +YP+KPP V+F + +HPN+Y G+ICL IL W P + I+
Sbjct: 54 AGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIV 113
Query: 92 TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRV 126
+Q LL PNPNSPA A R FS NK EY+++V
Sbjct: 114 LGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAIL 91
+ G + +T+++ +YP+KPP V+F + +HPN+Y G+ICL IL W P + I+
Sbjct: 56 AGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIV 115
Query: 92 TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRV 126
+Q LL PNPNSPA A R FS NK EY+++V
Sbjct: 116 LGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 150
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F L + F DYP K P V F+++++HPNI +G ICLDIL++QWSP ++ +L SI
Sbjct: 50 GGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSI 109
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 128
SLL DPNP+ P + E A + NK+++ RE
Sbjct: 110 SSLLTDPNPSDPLDPEVANVLRANKKQFEDTARE 143
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 13/115 (11%)
Query: 32 LNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------Q 78
L G FK L F DYP KPP ++F+S ++HPNI +G++C+ IL +
Sbjct: 47 LYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPE 106
Query: 79 NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 133
+W P++ V IL S+ S+L DPN SPAN +AA+M EN E+ ++V + V +S
Sbjct: 107 ERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS 161
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILT 92
G F L + DYP PP ++FV++++HPNI + G+ICLD+L+N+WSP + L
Sbjct: 68 EGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALL 127
Query: 93 SIQSLLCDPNPNSPANSEAARMFSEN 118
SIQ+LL DP P+ P ++E A+M+ EN
Sbjct: 128 SIQALLSDPQPDDPQDAEVAKMYKEN 153
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 61/95 (64%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
GT+KL L E YP +PP VRF+++++HPNI G ICLDIL+++WSP + +L S
Sbjct: 46 EGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLS 105
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 128
IQ+LL P P+ P +S+ A F ++K + R+
Sbjct: 106 IQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQ 140
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 61/95 (64%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
GT+KL L E YP +PP VRF+++++HPNI G ICLDIL+++WSP + +L S
Sbjct: 46 EGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLS 105
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 128
IQ+LL P P+ P +S+ A F ++K + R+
Sbjct: 106 IQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQ 140
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPA 109
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN SPA +EA ++ +N+ EY +RVR
Sbjct: 110 ITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 92.8 bits (229), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPA 109
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN +PA +EA ++ +N+ EY +RVR
Sbjct: 110 ITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPA 106
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 107 ITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P
Sbjct: 52 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPA 111
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 112 ITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 154
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPA 109
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 110 ITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P
Sbjct: 48 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPA 107
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 108 ITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 150
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPA 108
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 109 ITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPA 108
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 109 ITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHP +Y G++CL IL+ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPA 109
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 110 ITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 59/98 (60%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
+ G F++ L +D+P PP F++++FHPN+ A+G IC+++L+ W+ + +L +
Sbjct: 58 AGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLT 117
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 131
I+ LL PNP S N EA R+ EN EY R R + E
Sbjct: 118 IKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 155
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 13/111 (11%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWS 82
G F L F DYP PP +RF MFHPNIY DG +C+ IL +WS
Sbjct: 54 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 113
Query: 83 PIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 133
P+ V IL S+ S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 114 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 164
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 13/111 (11%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWS 82
G F L F DYP PP +RF MFHPNIY DG +C+ IL +WS
Sbjct: 55 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 114
Query: 83 PIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 133
P+ V IL S+ S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 115 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 165
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 13/111 (11%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWS 82
G F L F DYP PP +RF MFHPNIY DG +C+ IL +WS
Sbjct: 51 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 110
Query: 83 PIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 133
P+ V IL S+ S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 111 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 13/111 (11%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWS 82
G F L F DYP PP +RF MFHPNIY DG +C+ IL +WS
Sbjct: 57 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 116
Query: 83 PIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 133
P+ V IL S+ S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 117 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 167
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 95
G+ L F E YP +PP V + ++FHPNI G++CL+IL+ WSP D+ +I+T +
Sbjct: 80 GSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLL 139
Query: 96 SLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
L +PNPN P N +AA++ E ++E+ VR
Sbjct: 140 FLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 59/95 (62%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
G F+L L +DYP + P VRF+++++HPNI G ICLD+L+ WSP + +L S
Sbjct: 48 EDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLS 107
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 128
IQ+LL PNPN P ++ A + +N++ + RE
Sbjct: 108 IQALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 142
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHPN+ G++CL IL+ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPA 109
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 110 ITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
GTFKL L E+YP P VRF+++++HPN+ G ICLDIL+++WSP + +L S
Sbjct: 51 EGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLS 110
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135
IQ+LL PNP+ P ++ A + N+ + R +WT
Sbjct: 111 IQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR-----AWT 147
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 95
G F+L L +DYP + P VRF+++++HPNI G ICLD+L+ WSP + +L SIQ
Sbjct: 52 GIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQ 111
Query: 96 SLLCDPNPNSPANSEAARMFSENKREYNRRVRE 128
+LL PNPN P ++ A + +N++ + RE
Sbjct: 112 ALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 144
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 26 HGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIY 85
HG + +KL+L+F YP PTV+F++ +HPN+ G+I LDIL+ +WS +Y
Sbjct: 67 HGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALY 126
Query: 86 DVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 136
DV IL SIQSLL +PN +SP N+ AA ++ +N + + ++E + T+
Sbjct: 127 DVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
GTFKL L E+YP P VRF+++++HPN+ G ICLDIL+++WSP + +L S
Sbjct: 50 EGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLS 109
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135
IQ+LL PNP+ P ++ A + N+ + R +WT
Sbjct: 110 IQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR-----AWT 146
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
GTFKL L E+YP P VRF+++++HPN+ G ICLDIL+++WSP + +L S
Sbjct: 48 EGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLS 107
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135
IQ+LL PNP+ P ++ A + N+ + R +WT
Sbjct: 108 IQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR-----AWT 144
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
GTFKL L E+YP P VRF+++++HPN+ G ICLDIL+++WSP + +L S
Sbjct: 53 EGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLS 112
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135
IQ+LL PNP+ P ++ A + N+ + R +WT
Sbjct: 113 IQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR-----AWT 149
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
GTFKL L E+YP P VRF+++++HPN+ G ICLDIL+++WSP + +L S
Sbjct: 46 EGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLS 105
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 135
IQ+LL PNP+ P ++ A + N+ + R +WT
Sbjct: 106 IQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR-----AWT 142
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHPN+Y G++ L IL+ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPA 106
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 107 ITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 27 GKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPI 84
GK G FKL + F +DYP+ PP +F +FHPN+Y G++ L IL+ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPA 106
Query: 85 YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+ IL IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 107 ITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVR 149
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTS 93
G F L + DYP PP ++FV++++HPNI + G+ICLDIL+++WSP + L S
Sbjct: 91 GGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLS 150
Query: 94 IQSLLCDPNPNSPANSEAARMFSEN 118
IQ++L DP P P ++E A+M EN
Sbjct: 151 IQAMLADPVPTDPQDAEVAKMMIEN 175
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 59/98 (60%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP ++ +L SI
Sbjct: 49 GGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSI 108
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLL D NP P A + N+ E++R R+ ++
Sbjct: 109 CSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 146
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 14/109 (12%)
Query: 32 LNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------Q 78
L G FK L F +DYP +PP ++F++ ++HPN+ +G +C+ IL +
Sbjct: 61 LYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPE 120
Query: 79 NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKR-EYNRRV 126
+W PI+ V I+ S+ S+L DPN +SPAN +AA+ + E++ E+ R+V
Sbjct: 121 ERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 169
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 85.5 bits (210), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 59/98 (60%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 94
G F L + FT +YP KPP V F +R++H NI + G ICLDIL++ WSP ++ +L SI
Sbjct: 94 GGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSI 153
Query: 95 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
SLL D NP P A + N+ E++R R+ ++
Sbjct: 154 CSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 191
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 95
G F+L L +DYP + P VRF+++++HPNI G I LD+L+ WSP + +L SIQ
Sbjct: 50 GIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQ 109
Query: 96 SLLCDPNPNSPANSEAARMFSENKREYNRRVRE 128
+LL PNPN P ++ A + +N++ + RE
Sbjct: 110 ALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 142
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Query: 22 SHISHGKFLILNSSGT------FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICL 74
S I H K L GT F + ++ +YP KPP ++F ++++HPNI + G+ICL
Sbjct: 29 SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICL 88
Query: 75 DILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 124
DIL+N WSP+ + + L S+Q+LL P PN P ++E A+ + ++ +N+
Sbjct: 89 DILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 7/111 (6%)
Query: 21 HSHISHGKFLILNSSGT------FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSIC 73
S I H K L GT F + ++ +YP KPP ++F ++++HPNI + G+IC
Sbjct: 29 ESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAIC 88
Query: 74 LDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 124
LDIL+N WSP+ + + L S+Q+LL P PN P ++E A+ + ++ +N+
Sbjct: 89 LDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAA 89
G FKL + E YP +PP +RF++ ++HPNI + G ICLD+L + W P ++A
Sbjct: 49 EKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIAT 108
Query: 90 ILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
+LTSIQ L+ +PNP+ P ++ + F NK + + R+ E+
Sbjct: 109 VLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 151
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
SG F + + + YP+ PP V+ + ++HPNI +G++CL+IL+ W P+ + +I+
Sbjct: 49 KSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYG 108
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 136
+Q L +PNP P N EAA + N+R + + V+ +
Sbjct: 109 LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXRGGYIG 151
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 95
G F+L L +DYP + P VRF+++++HP I G I LD+L+ WSP + +L SIQ
Sbjct: 50 GIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQ 109
Query: 96 SLLCDPNPNSPANSEAARMFSENKREYNRRVRE 128
+LL PNPN P ++ A + +N++ + RE
Sbjct: 110 ALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 142
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILT 92
G +K+ + + YP K P++ F++++FHPNI A G++CLD++ W+ +YD+ I
Sbjct: 66 EGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFE 125
Query: 93 S-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 137
S + LL PNP P N +AA M+ EY ++++E +++ T +
Sbjct: 126 SFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEE 171
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQ 80
+ G F L+F +DYP PP + F + HPNIY +G +C+ IL + +
Sbjct: 50 ADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEER 109
Query: 81 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
WSP+ V IL S+ S+L +PN S AN +A ++ +N+ E+ R+V+
Sbjct: 110 WSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 19/115 (16%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQW 81
G FK L+F DYP PP RF+++M+HPNIY G +C+ IL +W
Sbjct: 54 GGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERW 113
Query: 82 SPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK------REYNRRVREIV 130
+P +V IL S+ SLL +PN SPAN +A+ M+ + K REY +R+ V
Sbjct: 114 NPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 168
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 19/115 (16%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQW 81
G FK L+F DYP PP RF+++M+HPNIY G +C+ IL +W
Sbjct: 51 GGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERW 110
Query: 82 SPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK------REYNRRVREIV 130
+P +V IL S+ SLL +PN SPAN +A+ M+ + K REY +R+ V
Sbjct: 111 NPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 165
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 93
SG F + + + YP+ PP V+ + ++HPNI +G++ L+IL+ W P+ + +I+
Sbjct: 69 KSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYG 128
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 136
+Q L +PNP P N EAA + N+R + + V+ + +
Sbjct: 129 LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIG 171
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 26 HGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPI 84
HG G +K+ + +DYP P++ F++++ HPN+ A GS+CLD++ W+P+
Sbjct: 36 HGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPL 95
Query: 85 YDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 131
Y + + + LL PNP+ P NS+AA + ++K Y +V+E V+
Sbjct: 96 YSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVK 143
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 36 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS- 93
GT+ L +Q DYP K P++ F +R+ HPN+ GS+CLD++ W+P+Y + I
Sbjct: 55 GTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVF 114
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 130
+ LL PNP+ P N +AA + ++ ++ +RE V
Sbjct: 115 LPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHV 151
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTS 93
G F++ + F +YP KPP + F ++++HPNI G +CL ++ + W P ++ S
Sbjct: 48 KGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQS 107
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
+ +L+ DP P P ++ A +S++++++ + E ++
Sbjct: 108 LIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTS 93
G F++ + F +YP KPP + F ++++HPNI G +CL ++ + W P ++ S
Sbjct: 50 KGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQS 109
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
+ +L+ DP P P ++ A +S++++++ + E ++
Sbjct: 110 LIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 148
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 37 TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQN--QWSPIYDVAAILTS 93
F+LT+ FT +Y PP V+F++ FHPN+ G C+D L N +W+ Y +++IL +
Sbjct: 71 VFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLA 130
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+Q +L +P +P N EAAR+ +++ Y +R
Sbjct: 131 LQVMLSNPVLENPVNLEAARILVKDESLYRTILR 164
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS 93
G ++L ++ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S
Sbjct: 70 GGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS 129
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+Q+LL P+ P ++ A + +N + + R
Sbjct: 130 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 163
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS 93
G ++L ++ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S
Sbjct: 55 GGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS 114
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+Q+LL P+ P ++ A + +N + + R
Sbjct: 115 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 148
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS 93
G ++L ++ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S
Sbjct: 54 GGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS 113
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+Q+LL P+ P ++ A + +N + + R
Sbjct: 114 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 147
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILT 92
G ++L ++ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L
Sbjct: 56 EGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLL 115
Query: 93 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
S+Q+LL P+ P ++ A + +N + + R
Sbjct: 116 SLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 150
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS 93
G ++L ++ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S
Sbjct: 106 GGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS 165
Query: 94 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 127
+Q+LL P+ P ++ A + +N + + R
Sbjct: 166 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 199
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 37 TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQ 95
F L + F +YP KPP ++F ++++HPN+ +G ICL I+ ++ W P +L ++
Sbjct: 52 AFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALN 111
Query: 96 SLLCDPNPNSPANSEAARMFSENKREYNRRVRE 128
L+ PN P + A + ++N + + E
Sbjct: 112 VLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 144
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 37 TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQ 95
F L + F +YP KPP ++F ++++HPN+ +G ICL I+ ++ W P +L ++
Sbjct: 49 AFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALN 108
Query: 96 SLLCDPNPNSPANSEAARMFSENKREYNRRVRE 128
L+ PN P + A + ++N + + E
Sbjct: 109 VLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 141
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 17/112 (15%)
Query: 34 SSGTFKLTLQFTEDYPNKPPTVRFV-----SRMFHPNIYADGSICLDIL-------QNQW 81
++G F+ + F +DYP+ PP V S F+PN+Y DG +CL IL + +W
Sbjct: 125 ANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKW 184
Query: 82 SP-IYDVAAILTSIQSLL--CDPNPNSPA--NSEAARMFSENKREYNRRVRE 128
+P +L S+QSL+ +P N P S +++ REY+ +R+
Sbjct: 185 NPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQ 236
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 37/51 (72%)
Query: 33 NSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSP 83
+ T++L++ F++DYP++PPTVRFV+ ++ P + +G IC ++ + W+P
Sbjct: 66 GAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTP 116
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ------WSPIYDVA 88
G F+ + + Y PP V+ +++++HPNI G ICL +L+ W+P +
Sbjct: 60 GGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLK 119
Query: 89 AILTSIQSLLCD-PNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
++ + SL D N + P N EAA +K ++ +V + +++
Sbjct: 120 DVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 164
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 35 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ------WSPIYDVA 88
G F+ + + Y PP V+ +++++HPNI G ICL +L+ W+P +
Sbjct: 60 GGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLK 119
Query: 89 AILTSIQSLLCD-PNPNSPANSEAARMFSENKREYNRRVREIVEQ 132
++ + SL D N + P N EAA +K ++ +V + +++
Sbjct: 120 DVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 164
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 6 IDCLLDIK----QVFILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRM 61
I+C LD+ +++I+ Y G + ++ +KL + F +DYP KPP V F+ +
Sbjct: 24 INCTLDVHPNNIRIWIVKYV-----GLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKP 78
Query: 62 -FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 98
H ++Y++G ICL +L + ++P ++ ++ SI S+L
Sbjct: 79 PKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 116
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 95
F+L +F+ YP P V F HP++Y++G ICL IL WSP V ++ SI
Sbjct: 73 FQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSII 132
Query: 96 SLL 98
S+L
Sbjct: 133 SML 135
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 37 TFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 95
+K+ + F ++YP KPP V F+ + H ++Y++G ICL +L + ++P ++ ++ SI
Sbjct: 68 VYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSII 127
Query: 96 SLL 98
S+L
Sbjct: 128 SML 130
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 38 FKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSI 94
F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+ + ++
Sbjct: 67 FRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHCVHAV 126
Query: 95 QSLLCDPNPNSPANSEAARMF 115
LL +P +SP + + +
Sbjct: 127 WRLLREPVSDSPLDVDIGNII 147
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 38 FKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSI 94
F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+ + ++
Sbjct: 67 FRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAV 126
Query: 95 QSLLCDPNPNSPANSEAARMF 115
LL +P +SP + + +
Sbjct: 127 WRLLREPVCDSPLDVDIGNII 147
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 38 FKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSI 94
F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+ + ++
Sbjct: 67 FRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAV 126
Query: 95 QSLLCDPNPNSPANSEAARMF 115
LL +P +SP + + +
Sbjct: 127 WRLLREPVCDSPLDVDIGAII 147
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 40 LTLQFTEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 97
L F +++P PP VR VS + + G+IC+++L Q WS Y + +++ I +
Sbjct: 72 LNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISAT 131
Query: 98 LCDPNPNSPANSEAARMFSENKREYN 123
L +A F NK +Y+
Sbjct: 132 LV--------KGKARVQFGANKSQYS 149
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 40 LTLQFTEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 97
L F +++P PP VR V + + G++C+++L Q WS Y + +++ I +
Sbjct: 93 LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINAT 152
Query: 98 LCDPNPNSPANSEAARMFSENKREYN 123
L +A F NK +YN
Sbjct: 153 LV--------KGKARVQFGANKNQYN 170
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 17 ILTYHSHISHGKFLILNSSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL 74
IL +H ++ G + G + L F ++P KPP++ M PN + +CL
Sbjct: 43 ILEWH-YVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIY----MITPNGRFKCNTRLCL 97
Query: 75 DILQ---NQWSPIYDVAAILTSIQSLLCDPNPN 104
I + W+P + V+ ILT + S + + P
Sbjct: 98 SITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT 130
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC---LDILQNQWSPIYDVAAILTSI 94
+ LT+ ++YP+ PPTV+F +++ + G + L IL+N W+ Y + IL S+
Sbjct: 78 YSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISL 136
Query: 95 -QSLLCDPNPNSPANSEA 111
Q +L N P +E
Sbjct: 137 RQEMLSSANKRLPQPNEG 154
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC---LDILQNQWSPIYDVAAILTSI 94
+ LT+ ++YP+ PPTV+F +++ + G + L IL+N W+ Y + IL S+
Sbjct: 74 YSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISL 132
Query: 95 -QSLLCDPNPNSPANSEAARMFSEN 118
Q +L N P +E ++S N
Sbjct: 133 RQEMLSSANKRLPQPNE-GEVYSNN 156
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI----CLDILQNQWSPIYDVAAILTS 93
+ L ++ YP PP VRFV+++ + + + + +L +W Y + +L
Sbjct: 88 YSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQE 146
Query: 94 IQSLL 98
++ L+
Sbjct: 147 LRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI----CLDILQNQWSPIYDVAAILTS 93
+ L ++ YP PP VRFV+++ + + + + +L +W Y + +L
Sbjct: 78 YSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQE 136
Query: 94 IQSLL 98
++ L+
Sbjct: 137 LRRLM 141
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI----CLDILQNQWSPIYDVAAILTS 93
+ L ++ YP PP VRFV+++ + + + + +L +W Y + +L
Sbjct: 60 YSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQE 118
Query: 94 IQSLL 98
++ L+
Sbjct: 119 LRRLM 123
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 28.9 bits (63), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC----LDILQNQWSPIYDVAAILTS 93
+ L ++ YP PP+VRFV+++ I + + +L +W Y + +L
Sbjct: 63 YSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQE 121
Query: 94 IQSLL 98
++ L+
Sbjct: 122 LRRLM 126
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC----LDILQNQWSPIYDVAAILTS 93
+ L ++ YP PP+VRFV+++ I + + +L +W Y + +L
Sbjct: 57 YSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQE 115
Query: 94 IQSLL 98
++ L+
Sbjct: 116 LRRLM 120
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC----LDILQNQWSPIYDVAAILTS 93
+ L ++ YP PP+VRFV+++ I + + +L +W Y + +L
Sbjct: 68 YSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQE 126
Query: 94 IQSLL 98
++ L+
Sbjct: 127 LRRLM 131
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC----LDILQNQWSPIYDVAAILTS 93
+ L ++ YP PP+VRFV+++ I + + +L +W Y + +L
Sbjct: 58 YSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQE 116
Query: 94 IQSLL 98
++ L+
Sbjct: 117 LRRLM 121
>pdb|4IUJ|A Chain A, Structure Of Polymerase Acid Protein (pa) From
Influenzavirus A Influenza A Virus A, Wilson-smith/1933
(h1n1)
Length = 464
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 8 CLLDIKQVFILTYHSHISHGKFLILNSSGTFKLTLQF 44
C+L++ + + + H+S FL + ++GT K+ +++
Sbjct: 289 CVLEVGDMLLRSAIGHVSRPMFLYVRTNGTSKIKMKW 325
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIY-ADGSICLDI-LQNQWSPIYDVAAILTSIQ 95
+ L++ +YP+ PP V F+S++ P + G + D W Y + +L ++
Sbjct: 59 YSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLR 118
Query: 96 SLLCDP 101
+ P
Sbjct: 119 KEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 38 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIY-ADGSICLDI-LQNQWSPIYDVAAILTSIQ 95
+ L++ +YP+ PP V F+S++ P + G + D W Y + +L ++
Sbjct: 58 YSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLR 117
Query: 96 SLLCDP 101
+ P
Sbjct: 118 KEMATP 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,227,082
Number of Sequences: 62578
Number of extensions: 158378
Number of successful extensions: 494
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 120
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)